RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy1764
(498 letters)
>gnl|CDD|197624 smart00280, KAZAL, Kazal type serine protease inhibitors. Kazal
type serine protease inhibitors and follistatin-like
domains.
Length = 46
Score = 50.4 bits (121), Expect = 1e-08
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 167 SSDTHQVCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 206
+ VCG+DGVTY + CHL +AAC GKSI + + G C
Sbjct: 7 PREYDPVCGSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
Score = 50.4 bits (121), Expect = 1e-08
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 243 SSDTHQVCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 282
+ VCG+DGVTY + CHL +AAC GKSI + + G C
Sbjct: 7 PREYDPVCGSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
Score = 44.2 bits (105), Expect = 2e-06
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 298 GTDGVTYESACHLREAACRRGKSIPIAYRGHC 329
G+DGVTY + CHL +AAC GKSI + + G C
Sbjct: 15 GSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
Score = 43.8 bits (104), Expect = 2e-06
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 85 DCKQRGRHMRNPVCGSDGRNYKTVCRLRKRACRKNEVISVDYFGTC 130
DC + +PVCGSDG Y C L K AC + I V + G C
Sbjct: 1 DCPEACPREYDPVCGSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
Score = 43.8 bits (104), Expect = 2e-06
Identities = 19/46 (41%), Positives = 23/46 (50%)
Query: 358 DCKQRGRHMRNPVCGSDGRNYKTVCRLRKRACRKNEVISVDYFGTC 403
DC + +PVCGSDG Y C L K AC + I V + G C
Sbjct: 1 DCPEACPREYDPVCGSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
Score = 36.1 bits (84), Expect = 0.002
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 453 CGSNHVTYPSWCEMKADECQQRIVIETKYSGPC 485
CGS+ VTY + C + C+ IE K+ GPC
Sbjct: 14 CGSDGVTYSNECHLCKAACESGKSIEVKHDGPC 46
>gnl|CDD|238052 cd00104, KAZAL_FS, Kazal type serine protease inhibitors and
follistatin-like domains. Kazal inhibitors inhibit
serine proteases, such as, trypsin, chyomotrypsin, avian
ovomucoids, and elastases. The inhibitory domain has one
reactive site peptide bond, which serves the cognate
enzyme as substrate. The reactive site peptide bond is a
combining loop which has an identical conformation in
all Kazal inhibitors and in all enzyme/inhibitor
complexes. These Kazal domains (small hydrophobic core
of alpha/beta structure with 3 to 4 disulfide bonds)
often occur in tandem arrays. Similar domains are also
present in follistatin (FS) and follistatin-like family
members, which play an important role in tissue specific
regulation. The FS domain consists of an N-terminal beta
hairpin (FOLN/EGF-like domain) and a Kazal-like domain
and has five disulfide bonds. Although the Kazal-like
FS substructure is similar to Kazal proteinase
inhibitors, no FS domain has yet been shown to be a
proteinase inhibitor. Follistatin-like family members
include SPARC, also known as, BM-40 or osteonectin, the
Gallus gallus Flik protein, as well as, agrin which has
a long array of FS domains. The kazal-type inhibitor
domain has also been detected in an extracellular loop
region of solute carrier 21 (SLC21) family members
(organic anion transporters) , which may regulate the
specificity of anion uptake. The distant homolog,
Ascidian trypsin inhibitor, is included in this CD.
Length = 41
Score = 48.4 bits (116), Expect = 6e-08
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 167 SSDTHQVCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 206
+ VCG+DG TY + CHL AACR G+SI +A+ G C
Sbjct: 2 PKEYDPVCGSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
Score = 48.4 bits (116), Expect = 6e-08
Identities = 20/40 (50%), Positives = 26/40 (65%)
Query: 243 SSDTHQVCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 282
+ VCG+DG TY + CHL AACR G+SI +A+ G C
Sbjct: 2 PKEYDPVCGSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
Score = 42.6 bits (101), Expect = 7e-06
Identities = 18/32 (56%), Positives = 23/32 (71%)
Query: 298 GTDGVTYESACHLREAACRRGKSIPIAYRGHC 329
G+DG TY + CHL AACR G+SI +A+ G C
Sbjct: 10 GSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
Score = 39.6 bits (93), Expect = 8e-05
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 95 NPVCGSDGRNYKTVCRLRKRACRKNEVISVDYFGTC 130
+PVCGSDG+ Y C L ACR I+V + G C
Sbjct: 6 DPVCGSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
Score = 39.6 bits (93), Expect = 8e-05
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 368 NPVCGSDGRNYKTVCRLRKRACRKNEVISVDYFGTC 403
+PVCGSDG+ Y C L ACR I+V + G C
Sbjct: 6 DPVCGSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
Score = 35.7 bits (83), Expect = 0.002
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 453 CGSNHVTYPSWCEMKADECQQRIVIETKYSGPC 485
CGS+ TY + C + C+ I ++GPC
Sbjct: 9 CGSDGKTYSNECHLGCAACRSGRSITVAHNGPC 41
>gnl|CDD|191798 pfam07648, Kazal_2, Kazal-type serine protease inhibitor domain.
Usually indicative of serine protease inhibitors.
However, kazal-like domains are also seen in the
extracellular part of agrins, which are not known to be
protease inhibitors. Kazal domains often occur in tandem
arrays. Small alpha+beta fold containing three
disulphides.
Length = 42
Score = 41.6 bits (98), Expect = 2e-05
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 166 PSSDTHQVCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 206
P + VCG+DG TY + C L A+C G+ I + Y G C
Sbjct: 2 PRENDEPVCGSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
Score = 41.6 bits (98), Expect = 2e-05
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 242 PSSDTHQVCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 282
P + VCG+DG TY + C L A+C G+ I + Y G C
Sbjct: 2 PRENDEPVCGSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
Score = 37.7 bits (88), Expect = 5e-04
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 91 RHMRNPVCGSDGRNYKTVCRLRKRACRKNEVISVDYFGTC 130
R PVCGSDG+ Y C L +C E I V Y G+C
Sbjct: 3 RENDEPVCGSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
Score = 37.7 bits (88), Expect = 5e-04
Identities = 18/40 (45%), Positives = 21/40 (52%)
Query: 364 RHMRNPVCGSDGRNYKTVCRLRKRACRKNEVISVDYFGTC 403
R PVCGSDG+ Y C L +C E I V Y G+C
Sbjct: 3 RENDEPVCGSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
Score = 36.2 bits (84), Expect = 0.001
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 298 GTDGVTYESACHLREAACRRGKSIPIAYRGHC 329
G+DG TY + C L A+C G+ I + Y G C
Sbjct: 11 GSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
Score = 33.5 bits (77), Expect = 0.014
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
Query: 440 CPHRHQGPLPPMLCGSNHVTYPSWCEMKADECQQRIVIETKYSGPC 485
CP + P+ CGS+ TY + C + C I+ KY G C
Sbjct: 1 CPRENDEPV----CGSDGKTYSNKCALCCASCLLGEKIKVKYEGSC 42
>gnl|CDD|200959 pfam00050, Kazal_1, Kazal-type serine protease inhibitor domain.
Usually indicative of serine protease inhibitors.
However, kazal-like domains are also seen in the
extracellular part of agrins, which are not known to be
protease inhibitors. Kazal domains often occur in tandem
arrays. Small alpha+beta fold containing three
disulphides. Alignment also includes a single domain
from transporters in the OATP/PGT family.
Length = 48
Score = 39.3 bits (92), Expect = 1e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 173 VCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 206
VCG+DGVTY + C L ++G +I + G C
Sbjct: 15 VCGSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
Score = 39.3 bits (92), Expect = 1e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 249 VCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 282
VCG+DGVTY + C L ++G +I + G C
Sbjct: 15 VCGSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
Score = 33.9 bits (78), Expect = 0.009
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 298 GTDGVTYESACHLREAACRRGKSIPIAYRGHC 329
G+DGVTY + C L ++G +I + G C
Sbjct: 17 GSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
Score = 31.2 bits (71), Expect = 0.11
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 5/50 (10%)
Query: 436 YPPSCPHRHQGPLPPMLCGSNHVTYPSWCEMKADECQQRIVIETKYSGPC 485
YP +CP R P+ CGS+ VTY + CE+ + +Q I K+ GPC
Sbjct: 4 YPEACP-REYDPV----CGSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
Score = 28.9 bits (65), Expect = 0.71
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 95 NPVCGSDGRNYKTVCRLRKRACRKNEVISVDYFGTC 130
+PVCGSDG Y C L ++ I + G C
Sbjct: 13 DPVCGSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
Score = 28.9 bits (65), Expect = 0.71
Identities = 13/36 (36%), Positives = 17/36 (47%)
Query: 368 NPVCGSDGRNYKTVCRLRKRACRKNEVISVDYFGTC 403
+PVCGSDG Y C L ++ I + G C
Sbjct: 13 DPVCGSDGVTYSNECELCNENVKQGTNIHKKHDGPC 48
>gnl|CDD|238649 cd01328, FSL_SPARC, Follistatin-like SPARC (secreted protein,
acidic, and rich in cysteines) domain;
SPARC/BM-40/osteonectin is a multifunctional
glycoprotein which modulates cellular interaction with
the extracellular matrix by its binding to structural
matrix proteins such as collagen and vitronectin. The
protein it composed of an N-terminal acidic region, a
follistatin (FS) domain and an EF-hand calcium binding
domain. The FS domain consists of an N-terminal beta
hairpin (FOLN/EGF-like domain) and a small hydrophobic
core of alpha/beta structure (Kazal domain) and has five
disulfide bonds and a conserved N-glycosylation site.
The FSL_SPARC domain is a member of the superfamily of
kazal-like proteinase inhibitors and follistatin-like
proteins.
Length = 86
Score = 38.6 bits (90), Expect = 5e-04
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 135 CDRVTCPSGKFCILDQNLIPHCNRCIRHCVTPSSDTHQVCGTDGVTYESACHLREAAC 192
C+ C +GK C +D P C CI C D +VC D T++S C L C
Sbjct: 2 CENHHCGAGKVCEVDDENTPKC-VCIDPCPEEVDDRRKVCTNDNETFDSDCELYRTRC 58
Score = 38.6 bits (90), Expect = 5e-04
Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 211 CDRVTCPSGKFCILDQNLIPHCNRCIRHCVTPSSDTHQVCGTDGVTYESACHLREAAC 268
C+ C +GK C +D P C CI C D +VC D T++S C L C
Sbjct: 2 CENHHCGAGKVCEVDDENTPKC-VCIDPCPEEVDDRRKVCTNDNETFDSDCELYRTRC 58
Score = 30.1 bits (68), Expect = 0.52
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 60 CENIDCGEGKKCAI-KKGYPKCICAPDCKQRGRHMRNPVCGSDGRNYKTVCRLRKRAC-- 116
CEN CG GK C + + PKC+C C + R VC +D + + C L + C
Sbjct: 2 CENHHCGAGKVCEVDDENTPKCVCIDPCPEEVDDRRK-VCTNDNETFDSDCELYRTRCLC 60
Query: 117 ---------RKNEVISVDYFGTCQ 131
K + + +DY+G C+
Sbjct: 61 KGGKKGCRGPKYQHLHLDYYGECK 84
Score = 30.1 bits (68), Expect = 0.52
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 333 CENIDCGEGKKCAI-KKGYPKCICAPDCKQRGRHMRNPVCGSDGRNYKTVCRLRKRAC-- 389
CEN CG GK C + + PKC+C C + R VC +D + + C L + C
Sbjct: 2 CENHHCGAGKVCEVDDENTPKCVCIDPCPEEVDDRRK-VCTNDNETFDSDCELYRTRCLC 60
Query: 390 ---------RKNEVISVDYFGTCQ 404
K + + +DY+G C+
Sbjct: 61 KGGKKGCRGPKYQHLHLDYYGECK 84
>gnl|CDD|233136 TIGR00805, oat, sodium-independent organic anion transporter. The
Organo Anion Transporter (OAT) Family (TC
2.A.60)Proteins of the OAT family catalyze the
Na+-independent facilitated transport of organic anions
such as bromosulfobromophthalein and prostaglandins as
well as conjugated and unconjugated bile acids
(taurocholate and cholate, respectively). These
transporters have been characterized in mammals, but
homologues are present in C. elegans and A. thaliana.
Some of the mammalian proteins exhibit a high degree of
tissue specificity. For example, the rat OAT is found at
high levels in liver and kidney and at lower levels in
other tissues. These proteins possess 10-12 putative
a-helical transmembrane spanners. They may catalyze
electrogenic anion uniport or anion exchange.
Length = 633
Score = 40.1 bits (94), Expect = 0.003
Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 126 YFGTCQTGSCDRVTCPSGKFCILDQNLIPHCNRCIRHCVTPSSDTHQVCGTDGVTYESAC 185
+ C++ V PS I +N CNR C SS VCG +G+ Y S C
Sbjct: 420 FLIGCESAPVAGVNNPSTDQSIYVENP-TDCNR---QCSCDSSFFDPVCGDNGLAYLSPC 475
Query: 186 HLREAACR 193
H A C
Sbjct: 476 H---AGCS 480
Score = 37.8 bits (88), Expect = 0.014
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 3/35 (8%)
Query: 235 CIRHCVTPSSDTHQVCGTDGVTYESACHLREAACR 269
C R C SS VCG +G+ Y S CH A C
Sbjct: 449 CNRQCSCDSSFFDPVCGDNGLAYLSPCH---AGCS 480
>gnl|CDD|238648 cd01327, KAZAL_PSTI, Kazal-type pancreatic secretory trypsin
inhibitors (PSTI) and related proteins, including the
second domain of the ovomucoid turkey inhibitor and the
C-terminal domain of the esophagus cancer-related gene-2
protein (ECRG-2), are members of the superfamily of
kazal-type proteinase inhibitors and follistatin-like
proteins.
Length = 45
Score = 32.6 bits (75), Expect = 0.024
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 167 SSDTHQVCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 206
D VCGTDGVTY + C L +R +I I + G C
Sbjct: 6 PKDYDPVCGTDGVTYSNECLLCAENLKRQTNIRIKHDGEC 45
Score = 32.6 bits (75), Expect = 0.024
Identities = 17/40 (42%), Positives = 21/40 (52%)
Query: 243 SSDTHQVCGTDGVTYESACHLREAACRRGKSIPIAYRGHC 282
D VCGTDGVTY + C L +R +I I + G C
Sbjct: 6 PKDYDPVCGTDGVTYSNECLLCAENLKRQTNIRIKHDGEC 45
Score = 27.2 bits (61), Expect = 2.3
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 298 GTDGVTYESACHLREAACRRGKSIPIAYRGHC 329
GTDGVTY + C L +R +I I + G C
Sbjct: 14 GTDGVTYSNECLLCAENLKRQTNIRIKHDGEC 45
>gnl|CDD|217384 pfam03137, OATP, Organic Anion Transporter Polypeptide (OATP)
family. This family consists of several eukaryotic
Organic-Anion-Transporting Polypeptides (OATPs). Several
have been identified mostly in human and rat. Different
OATPs vary in tissue distribution and substrate
specificity. Since the numbering of different OATPs in
particular species was based originally on the order of
discovery, similarly numbered OATPs in humans and rats
did not necessarily correspond in function, tissue
distribution and substrate specificity (in spite of the
name, some OATPs also transport organic cations and
neutral molecules). Thus, Tamai et al. initiated the
current scheme of using digits for rat OATPs and letters
for human ones. Prostaglandin transporter (PGT) proteins
are also considered to be OATP family members. In
addition, the methotrexate transporter OATK is closely
related to OATPs. This family also includes several
predicted proteins from Caenorhabditis elegans and
Drosophila melanogaster. This similarity was not
previously noted. Note: Members of this family are
described (in the Swiss-Prot database) as belonging to
the SLC21 family of transporters.
Length = 582
Score = 35.0 bits (81), Expect = 0.088
Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 9/64 (14%)
Query: 159 CIRHCVTPSSDTHQVCGTDGVTYESACHLREAACRRG--------KSIPIAYRGH-CKPG 209
C C +S VCG +G+TY S CH ++ G + + H G
Sbjct: 425 CNEDCSCDTSFFPPVCGDNGLTYLSPCHAGSSSSGTGCDTSCSTWSNNCSSGNSHSASKG 484
Query: 210 SCDR 213
C
Sbjct: 485 YCPS 488
Score = 32.7 bits (75), Expect = 0.54
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 235 CIRHCVTPSSDTHQVCGTDGVTYESACHLREAACRRG 271
C C +S VCG +G+TY S CH ++ G
Sbjct: 425 CNEDCSCDTSFFPPVCGDNGLTYLSPCHAGSSSSGTG 461
Score = 32.3 bits (74), Expect = 0.64
Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 12/71 (16%)
Query: 292 FWGVWSGTDGVTYESACHLREAACRRGKSIPIAYRGHCKQTCENIDCGEGKKCAIKKGYP 351
F+ G +G+TY S CH A C G + KGY
Sbjct: 435 FFPPVCGDNGLTYLSPCH----AGSSSSGTGCDTSCSTWSNN----CSSGNSHSASKGY- 485
Query: 352 KCICAPDCKQR 362
C DC +
Sbjct: 486 ---CPSDCCTQ 493
>gnl|CDD|238650 cd01330, KAZAL_SLC21, The kazal-type serine protease inhibitor
domain has been detected in an extracellular loop region
of solute carrier 21 (SLC21) family members (organic
anion transporters) , which may regulate the specificity
of anion uptake. The KAZAL_SLC21 domain is a member of
the superfamily of kazal-like proteinase inhibitors and
follistatin-like proteins.
Length = 54
Score = 29.6 bits (67), Expect = 0.36
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 159 CIRHCVTPSSDTHQVCGTDGVTYESACH 186
C +C S VCG +G+TY S CH
Sbjct: 5 CNSNCSCSESAYSPVCGENGITYFSPCH 32
Score = 29.6 bits (67), Expect = 0.36
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 235 CIRHCVTPSSDTHQVCGTDGVTYESACH 262
C +C S VCG +G+TY S CH
Sbjct: 5 CNSNCSCSESAYSPVCGENGITYFSPCH 32
>gnl|CDD|241318 cd13164, PTB_DOK4_DOK5_DOK6, Downstream of tyrosine kinase 4, 5,
and 6 proteins phosphotyrosine-binding domain (PTBi).
The Dok family adapters are phosphorylated by different
protein tyrosine kinases. Dok proteins are involved in
processes such as modulation of cell differentiation and
proliferation, as well as in control of the cell
spreading and migration The Dok protein contains an
N-terminal pleckstrin homology (PH) domain followed by a
central phosphotyrosine binding (PTB) domain, which has
a PH-like fold, and a proline- and tyrosine-rich
C-terminal tail. The PH domain binds to acidic
phospholids and localizes proteins to the plasma
membrane, while the PTB domain mediates protein-protein
interactions by binding to phosphotyrosine-containing
motifs. The C-terminal part of Dok contains multiple
tyrosine phosphorylation sites that serve as potential
docking sites for Src homology 2-containing proteins
such as ras GTPase-activating protein and Nck, leading
to inhibition of ras signaling pathway activation and
the c-Jun N-terminal kinase (JNK) and c-Jun activation,
respectively. There are 7 mammalian Dok members: Dok-1
to Dok-7. Dok-1 and Dok-2 act as negative regulators of
the Ras-Erk pathway downstream of many
immunoreceptor-mediated signaling systems, and it is
believed that recruitment of p120 rasGAP by Dok-1 and
Dok-2 is critical to their negative regulation. Dok-3 is
a negative regulator of the activation of JNK and
mobilization of Ca2+ in B-cell receptor-mediated
signaling, interacting with SHIP-1 and Grb2. Dok-4- 6
play roles in protein tyrosine kinase(PTK)-mediated
signaling in neural cells and Dok-7 is the key
cytoplasmic activator of MuSK (Muscle-Specific Protein
Tyrosine Kinase). PTB domains have a common PH-like fold
and are found in various eukaryotic signaling molecules.
This domain was initially shown to binds peptides with a
NPXY motif with differing requirements for
phosphorylation of the tyrosine, although more recent
studies have found that some types of PTB domains can
bind to peptides lack tyrosine residues altogether. In
contrast to SH2 domains, which recognize phosphotyrosine
and adjacent carboxy-terminal residues, PTB-domain
binding specificity is conferred by residues
amino-terminal to the phosphotyrosine. PTB domains are
classified into three groups: phosphotyrosine-dependent
Shc-like, phosphotyrosine-dependent IRS-like, and
phosphotyrosine-independent Dab-like PTB domains. This
cd is part of the IRS-like subgroup.
Length = 103
Score = 27.0 bits (60), Expect = 9.1
Identities = 13/40 (32%), Positives = 19/40 (47%), Gaps = 9/40 (22%)
Query: 398 DYFGTCQMAVTCANIQCQPGQTCLTDLRNGSPRCQTCSYP 437
D +G C + +T NI L D+ N PR + S+P
Sbjct: 18 DVYGECLLQITHENI-------YLWDIHN--PRVKLVSWP 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.138 0.482
Gapped
Lambda K H
0.267 0.0656 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,912,168
Number of extensions: 2137924
Number of successful extensions: 1983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1972
Number of HSP's successfully gapped: 86
Length of query: 498
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 397
Effective length of database: 6,457,848
Effective search space: 2563765656
Effective search space used: 2563765656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.4 bits)