Query psy17644
Match_columns 330
No_of_seqs 362 out of 2444
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 19:19:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17644.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17644hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0339|consensus 100.0 1.5E-61 3.3E-66 452.5 19.8 325 5-330 54-386 (731)
2 KOG0334|consensus 100.0 2.6E-45 5.6E-50 369.1 17.4 218 113-330 310-531 (997)
3 PTZ00110 helicase; Provisional 100.0 4.3E-42 9.2E-47 342.6 23.6 220 111-330 73-293 (545)
4 KOG0331|consensus 100.0 6.9E-42 1.5E-46 329.1 14.3 209 122-330 16-255 (519)
5 PLN00206 DEAD-box ATP-dependen 100.0 2.3E-39 4.9E-44 321.7 22.0 216 115-330 67-286 (518)
6 KOG0336|consensus 100.0 6.3E-40 1.4E-44 300.9 12.2 206 124-330 169-383 (629)
7 KOG0338|consensus 100.0 7.6E-38 1.7E-42 293.7 12.7 162 167-330 181-343 (691)
8 KOG0333|consensus 100.0 5.4E-38 1.2E-42 295.7 11.3 194 137-330 215-412 (673)
9 KOG0341|consensus 100.0 2.1E-38 4.5E-43 289.2 7.8 210 121-330 124-342 (610)
10 KOG0330|consensus 100.0 9.4E-37 2E-41 278.6 13.5 159 166-329 60-219 (476)
11 COG0513 SrmB Superfamily II DN 100.0 1.6E-35 3.4E-40 293.1 18.4 161 167-330 29-190 (513)
12 KOG0335|consensus 100.0 4.1E-35 8.9E-40 278.2 12.3 176 155-330 62-243 (482)
13 PRK04837 ATP-dependent RNA hel 100.0 7.8E-34 1.7E-38 276.1 19.6 165 166-330 7-173 (423)
14 KOG0348|consensus 100.0 2.8E-34 6.1E-39 271.1 15.0 170 161-330 130-303 (708)
15 KOG0345|consensus 100.0 3.4E-33 7.4E-38 260.5 16.1 164 167-330 4-173 (567)
16 PRK10590 ATP-dependent RNA hel 100.0 1.5E-32 3.3E-37 269.3 18.8 163 168-330 2-165 (456)
17 PRK04537 ATP-dependent RNA hel 100.0 1.9E-32 4.1E-37 274.5 19.3 164 167-330 9-175 (572)
18 KOG0343|consensus 100.0 2.5E-33 5.3E-38 265.5 11.0 164 165-330 67-231 (758)
19 PRK11192 ATP-dependent RNA hel 100.0 5.2E-32 1.1E-36 264.1 19.6 162 168-330 2-163 (434)
20 KOG0342|consensus 100.0 1.2E-32 2.6E-37 258.3 13.5 164 166-330 81-246 (543)
21 PRK11776 ATP-dependent RNA hel 100.0 6.2E-32 1.3E-36 265.4 18.3 159 167-330 4-163 (460)
22 KOG0347|consensus 100.0 2.2E-32 4.7E-37 259.1 14.1 167 164-330 178-356 (731)
23 KOG0340|consensus 100.0 2.4E-32 5.3E-37 247.2 11.1 159 166-329 6-168 (442)
24 PRK11634 ATP-dependent RNA hel 100.0 2E-31 4.3E-36 268.9 18.3 160 166-330 5-165 (629)
25 KOG0346|consensus 100.0 6.7E-32 1.5E-36 250.1 11.7 164 167-330 19-186 (569)
26 PRK01297 ATP-dependent RNA hel 100.0 2.5E-30 5.3E-35 255.0 19.4 166 165-330 85-253 (475)
27 KOG0337|consensus 100.0 1E-30 2.2E-35 241.2 8.6 161 166-330 20-180 (529)
28 PTZ00424 helicase 45; Provisio 100.0 4.1E-29 9E-34 241.1 17.9 160 166-330 27-186 (401)
29 KOG0328|consensus 100.0 2.6E-30 5.6E-35 227.9 8.2 165 161-330 21-185 (400)
30 cd00268 DEADc DEAD-box helicas 100.0 6E-28 1.3E-32 211.6 19.3 159 169-330 1-159 (203)
31 KOG0326|consensus 100.0 3.6E-30 7.9E-35 230.3 5.2 157 167-328 85-241 (459)
32 KOG0350|consensus 100.0 3.6E-28 7.9E-33 228.4 13.6 149 176-328 146-309 (620)
33 KOG0329|consensus 99.9 1.8E-27 3.8E-32 207.4 7.3 166 158-328 33-199 (387)
34 KOG0344|consensus 99.9 4.5E-27 9.7E-32 225.3 9.5 184 145-328 110-302 (593)
35 TIGR03817 DECH_helic helicase/ 99.9 1E-25 2.2E-30 231.5 18.9 148 173-328 20-171 (742)
36 KOG4284|consensus 99.9 6.9E-27 1.5E-31 225.1 8.1 165 160-330 18-183 (980)
37 PRK02362 ski2-like helicase; P 99.9 4.9E-25 1.1E-29 227.7 16.5 150 168-329 2-152 (737)
38 KOG0327|consensus 99.9 6E-26 1.3E-30 208.1 8.6 160 166-330 25-185 (397)
39 PRK00254 ski2-like helicase; P 99.9 1.5E-24 3.3E-29 223.6 17.0 151 168-329 2-153 (720)
40 PF00270 DEAD: DEAD/DEAH box h 99.9 4.9E-24 1.1E-28 180.8 14.8 133 191-329 1-134 (169)
41 PRK12899 secA preprotein trans 99.9 2E-24 4.4E-29 219.4 14.3 148 170-327 65-228 (970)
42 PRK13767 ATP-dependent helicas 99.9 3.9E-24 8.5E-29 223.8 15.0 155 174-329 18-187 (876)
43 PRK01172 ski2-like helicase; P 99.9 4.3E-23 9.3E-28 211.6 16.2 149 168-329 2-150 (674)
44 KOG0332|consensus 99.9 4.8E-24 1E-28 194.6 8.0 162 159-328 82-246 (477)
45 COG1201 Lhr Lhr-like helicases 99.9 3.2E-23 7E-28 210.2 13.4 154 174-328 8-163 (814)
46 PRK09401 reverse gyrase; Revie 99.9 1.5E-22 3.3E-27 215.3 17.6 138 181-329 72-216 (1176)
47 TIGR00614 recQ_fam ATP-depende 99.9 2.6E-22 5.6E-27 197.7 13.0 131 184-330 6-143 (470)
48 PLN03137 ATP-dependent DNA hel 99.9 4.5E-22 9.8E-27 206.1 15.1 148 168-330 436-597 (1195)
49 TIGR01054 rgy reverse gyrase. 99.9 7.6E-22 1.6E-26 210.2 16.8 142 176-328 65-213 (1171)
50 PRK14701 reverse gyrase; Provi 99.9 8.1E-22 1.7E-26 214.1 16.4 143 177-330 67-216 (1638)
51 TIGR02621 cas3_GSU0051 CRISPR- 99.9 2.6E-21 5.7E-26 197.3 13.8 133 185-330 12-185 (844)
52 PRK11057 ATP-dependent DNA hel 99.9 8.8E-21 1.9E-25 191.9 15.3 131 185-330 21-155 (607)
53 TIGR01389 recQ ATP-dependent D 99.8 8.9E-21 1.9E-25 191.8 14.4 131 185-330 9-143 (591)
54 PRK10917 ATP-dependent DNA hel 99.8 2.1E-20 4.5E-25 191.3 16.3 138 176-326 248-395 (681)
55 TIGR00643 recG ATP-dependent D 99.8 5.3E-20 1.1E-24 187.1 16.0 135 178-326 225-369 (630)
56 TIGR00580 mfd transcription-re 99.8 7E-20 1.5E-24 191.0 16.9 140 173-326 435-585 (926)
57 COG1205 Distinct helicase fami 99.8 5.4E-20 1.2E-24 190.6 15.7 146 174-325 55-206 (851)
58 PRK10689 transcription-repair 99.8 4.9E-19 1.1E-23 188.3 17.0 136 177-326 588-734 (1147)
59 TIGR00963 secA preprotein tran 99.8 3.9E-19 8.4E-24 178.9 13.3 129 187-327 54-189 (745)
60 KOG0349|consensus 99.8 7.6E-20 1.7E-24 170.0 6.9 90 241-330 287-379 (725)
61 PRK09200 preprotein translocas 99.8 1.2E-18 2.6E-23 177.6 14.7 130 186-327 76-212 (790)
62 PRK12898 secA preprotein trans 99.8 1.3E-18 2.7E-23 174.1 14.2 129 187-327 101-255 (656)
63 COG1204 Superfamily II helicas 99.8 1.8E-18 3.9E-23 177.2 14.6 145 173-328 15-160 (766)
64 TIGR03714 secA2 accessory Sec 99.8 3.8E-18 8.3E-23 172.6 14.3 129 189-327 70-208 (762)
65 PHA02558 uvsW UvsW helicase; P 99.8 9.1E-18 2E-22 166.6 16.0 125 187-328 112-236 (501)
66 PRK09751 putative ATP-dependen 99.8 3.7E-18 8.1E-23 183.3 13.0 120 209-328 1-138 (1490)
67 PRK13104 secA preprotein trans 99.8 9.2E-18 2E-22 171.3 14.6 128 188-327 81-215 (896)
68 smart00487 DEXDc DEAD-like hel 99.8 2.5E-17 5.5E-22 141.5 14.9 138 185-328 4-143 (201)
69 KOG0952|consensus 99.7 2.6E-17 5.7E-22 166.6 9.6 141 185-328 106-252 (1230)
70 KOG2340|consensus 99.7 4.9E-17 1.1E-21 154.6 10.9 142 186-327 213-428 (698)
71 PRK13766 Hef nuclease; Provisi 99.7 3.4E-16 7.4E-21 163.2 17.0 133 186-327 12-144 (773)
72 COG1202 Superfamily II helicas 99.7 2.5E-16 5.3E-21 151.3 11.0 152 169-328 196-352 (830)
73 PHA02653 RNA helicase NPH-II; 99.7 4.4E-16 9.5E-21 157.8 11.8 129 192-330 167-307 (675)
74 PRK12904 preprotein translocas 99.7 7E-16 1.5E-20 157.3 12.7 128 188-327 80-214 (830)
75 PRK05580 primosome assembly pr 99.6 3.1E-15 6.7E-20 153.0 14.9 122 188-327 143-271 (679)
76 COG1111 MPH1 ERCC4-like helica 99.6 2.9E-15 6.3E-20 142.6 12.7 131 187-326 13-143 (542)
77 TIGR03158 cas3_cyano CRISPR-as 99.6 4.2E-15 9.2E-20 141.5 13.8 124 193-328 1-159 (357)
78 KOG0354|consensus 99.6 1.7E-15 3.6E-20 151.4 11.1 130 188-326 61-191 (746)
79 COG0514 RecQ Superfamily II DN 99.6 1.3E-15 2.9E-20 150.1 8.3 131 185-330 13-147 (590)
80 TIGR01970 DEAH_box_HrpB ATP-de 99.6 8.3E-15 1.8E-19 151.7 13.8 121 193-328 6-128 (819)
81 cd00046 DEXDc DEAD-like helica 99.6 3.2E-14 6.9E-19 115.2 13.7 116 205-327 1-116 (144)
82 TIGR01407 dinG_rel DnaQ family 99.6 3.5E-14 7.5E-19 149.2 16.3 146 174-328 231-454 (850)
83 PRK11664 ATP-dependent RNA hel 99.6 1.1E-14 2.4E-19 151.0 12.1 117 194-325 10-127 (812)
84 TIGR01587 cas3_core CRISPR-ass 99.6 7.6E-15 1.6E-19 139.7 9.9 115 206-329 1-139 (358)
85 PRK13107 preprotein translocas 99.6 1E-14 2.2E-19 148.9 11.3 127 189-327 82-215 (908)
86 KOG0352|consensus 99.5 6E-14 1.3E-18 130.8 8.2 137 178-330 7-157 (641)
87 PRK07246 bifunctional ATP-depe 99.5 4.4E-13 9.5E-18 139.6 15.0 129 189-327 245-449 (820)
88 TIGR03117 cas_csf4 CRISPR-asso 99.5 5.1E-13 1.1E-17 134.2 14.5 125 198-328 10-220 (636)
89 PF04851 ResIII: Type III rest 99.4 7.6E-13 1.7E-17 113.1 11.0 128 189-327 3-159 (184)
90 COG1061 SSL2 DNA or RNA helica 99.4 7.9E-13 1.7E-17 129.2 11.0 122 188-328 35-160 (442)
91 TIGR00603 rad25 DNA repair hel 99.4 1.6E-12 3.4E-17 132.1 12.0 123 188-326 254-387 (732)
92 KOG0351|consensus 99.4 2.8E-13 6E-18 140.7 6.8 133 183-330 258-401 (941)
93 COG1110 Reverse gyrase [DNA re 99.4 6.1E-12 1.3E-16 128.2 15.0 142 178-329 71-218 (1187)
94 smart00488 DEXDc2 DEAD-like he 99.4 9.5E-12 2.1E-16 115.0 14.3 73 189-263 8-84 (289)
95 smart00489 DEXDc3 DEAD-like he 99.4 9.5E-12 2.1E-16 115.0 14.3 73 189-263 8-84 (289)
96 KOG0353|consensus 99.4 2.9E-12 6.4E-17 118.1 10.6 145 171-330 75-231 (695)
97 COG1200 RecG RecG-like helicas 99.3 1.2E-11 2.6E-16 122.5 12.9 140 174-326 247-396 (677)
98 PRK11448 hsdR type I restricti 99.3 8E-12 1.7E-16 133.3 12.4 131 188-326 412-552 (1123)
99 TIGR00595 priA primosomal prot 99.3 1.1E-11 2.4E-16 122.8 12.5 102 208-327 1-106 (505)
100 COG4581 Superfamily II RNA hel 99.3 5.2E-12 1.1E-16 131.1 10.0 130 184-329 115-244 (1041)
101 PRK08074 bifunctional ATP-depe 99.3 2.8E-11 6E-16 128.1 15.4 133 188-328 256-469 (928)
102 KOG0951|consensus 99.3 7.9E-12 1.7E-16 129.1 8.9 140 185-327 305-450 (1674)
103 PRK09694 helicase Cas3; Provis 99.3 3.4E-11 7.4E-16 125.3 12.3 134 187-326 284-451 (878)
104 PRK11131 ATP-dependent RNA hel 99.2 3.9E-11 8.5E-16 127.8 10.3 119 194-330 79-203 (1294)
105 KOG0947|consensus 99.2 1.2E-10 2.5E-15 118.0 10.5 122 188-328 296-417 (1248)
106 PRK13103 secA preprotein trans 99.2 1.2E-10 2.7E-15 119.4 10.4 128 188-327 81-215 (913)
107 PRK12326 preprotein translocas 99.2 2.5E-10 5.5E-15 114.7 12.0 129 187-327 76-211 (764)
108 PF07517 SecA_DEAD: SecA DEAD- 99.1 1.1E-09 2.3E-14 99.5 14.7 130 186-327 74-210 (266)
109 PRK12906 secA preprotein trans 99.1 2.8E-10 6E-15 116.3 11.4 129 187-327 78-213 (796)
110 TIGR00348 hsdR type I site-spe 99.1 4.9E-10 1.1E-14 114.9 11.4 125 190-326 239-377 (667)
111 COG1197 Mfd Transcription-repa 99.0 3.8E-09 8.2E-14 110.3 15.5 142 172-326 577-728 (1139)
112 PRK11747 dinG ATP-dependent DN 99.0 3E-09 6.6E-14 109.5 14.0 65 188-259 24-97 (697)
113 COG1199 DinG Rad3-related DNA 99.0 2.4E-09 5.3E-14 109.9 12.3 73 184-263 10-86 (654)
114 TIGR00604 rad3 DNA repair heli 99.0 3.8E-09 8.2E-14 109.3 12.2 73 186-263 7-83 (705)
115 PF00176 SNF2_N: SNF2 family N 99.0 4E-09 8.6E-14 97.3 10.9 116 203-327 24-147 (299)
116 KOG0948|consensus 98.9 2.7E-09 5.9E-14 105.9 8.5 123 187-328 127-249 (1041)
117 CHL00122 secA preprotein trans 98.9 2.6E-09 5.7E-14 109.3 8.6 127 189-327 76-209 (870)
118 PRK12902 secA preprotein trans 98.9 5.2E-09 1.1E-13 107.2 10.6 128 188-327 84-218 (939)
119 KOG0949|consensus 98.9 2.5E-09 5.4E-14 108.8 8.1 132 189-328 511-646 (1330)
120 TIGR01967 DEAH_box_HrpA ATP-de 98.9 1.1E-08 2.5E-13 109.6 12.5 120 196-329 74-195 (1283)
121 COG4096 HsdR Type I site-speci 98.9 7.2E-09 1.6E-13 104.5 9.4 123 188-325 164-296 (875)
122 PLN03142 Probable chromatin-re 98.8 3.3E-08 7.1E-13 104.5 13.3 129 189-327 169-304 (1033)
123 PF07652 Flavi_DEAD: Flaviviru 98.8 1.3E-08 2.9E-13 83.2 8.1 105 203-326 3-107 (148)
124 COG4098 comFA Superfamily II D 98.8 3.8E-08 8.3E-13 90.3 11.3 115 188-326 96-214 (441)
125 KOG1002|consensus 98.8 7.7E-08 1.7E-12 92.0 13.3 127 189-328 184-330 (791)
126 KOG0950|consensus 98.8 1.3E-08 2.8E-13 103.8 7.7 146 174-330 207-357 (1008)
127 KOG0385|consensus 98.8 4.1E-08 9E-13 98.0 11.1 130 188-327 166-302 (971)
128 COG1198 PriA Primosomal protei 98.7 4.7E-08 1E-12 99.6 10.4 120 188-325 197-324 (730)
129 PRK04914 ATP-dependent helicas 98.7 7.3E-08 1.6E-12 101.4 10.9 130 188-327 151-285 (956)
130 KOG0951|consensus 98.7 5.6E-08 1.2E-12 101.3 8.7 123 188-327 1142-1266(1674)
131 PRK12903 secA preprotein trans 98.7 1.6E-07 3.4E-12 96.2 11.4 128 188-327 77-211 (925)
132 COG4889 Predicted helicase [Ge 98.7 6.1E-08 1.3E-12 98.0 7.9 147 167-326 140-316 (1518)
133 PF06862 DUF1253: Protein of u 98.6 2E-08 4.2E-13 96.9 2.4 89 239-327 36-174 (442)
134 PF13086 AAA_11: AAA domain; P 98.6 3.4E-07 7.3E-12 81.0 10.0 72 190-262 2-75 (236)
135 KOG0387|consensus 98.5 3.8E-07 8.3E-12 91.6 8.4 136 172-327 196-350 (923)
136 KOG0391|consensus 98.5 6.5E-07 1.4E-11 92.9 10.1 130 190-329 616-752 (1958)
137 KOG1132|consensus 98.3 2.8E-06 6E-11 86.5 10.6 138 188-328 20-261 (945)
138 KOG0389|consensus 98.3 1.2E-06 2.7E-11 87.9 7.5 131 190-329 400-539 (941)
139 COG1203 CRISPR-associated heli 98.3 1.2E-06 2.5E-11 91.1 7.5 134 190-328 196-352 (733)
140 PRK12900 secA preprotein trans 98.3 1.2E-06 2.5E-11 91.2 6.3 124 194-327 141-271 (1025)
141 KOG1123|consensus 98.3 7.5E-07 1.6E-11 85.5 4.6 123 188-326 301-434 (776)
142 KOG4439|consensus 98.3 1.3E-06 2.7E-11 86.9 6.2 136 190-327 326-476 (901)
143 KOG0952|consensus 98.2 5.3E-07 1.2E-11 92.9 3.0 132 188-328 926-1060(1230)
144 KOG0390|consensus 98.2 1.7E-05 3.6E-10 81.1 12.7 135 189-327 238-389 (776)
145 PRK14873 primosome assembly pr 98.2 4.8E-06 1E-10 85.1 8.9 98 211-325 167-268 (665)
146 COG0610 Type I site-specific r 98.2 1.2E-05 2.7E-10 85.5 11.0 113 204-326 273-388 (962)
147 PRK12901 secA preprotein trans 98.1 4.7E-06 1E-10 86.9 6.7 128 190-327 168-303 (1112)
148 PF13604 AAA_30: AAA domain; P 98.1 4.9E-06 1.1E-10 72.6 5.6 63 189-259 1-65 (196)
149 KOG0392|consensus 98.1 3.3E-05 7.1E-10 81.1 12.2 133 190-327 976-1113(1549)
150 COG1643 HrpA HrpA-like helicas 98.1 2.2E-05 4.9E-10 81.6 11.0 119 193-325 54-173 (845)
151 KOG1803|consensus 98.0 1E-05 2.2E-10 79.6 6.9 66 188-261 184-250 (649)
152 KOG0384|consensus 98.0 1.8E-05 3.8E-10 83.1 8.1 127 188-327 369-510 (1373)
153 PRK15483 type III restriction- 98.0 7E-05 1.5E-09 78.6 12.6 117 205-327 60-214 (986)
154 TIGR00376 DNA helicase, putati 98.0 8.5E-05 1.8E-09 76.0 12.9 68 188-263 156-224 (637)
155 KOG0920|consensus 97.9 7.5E-05 1.6E-09 77.8 11.4 124 190-325 174-298 (924)
156 KOG1802|consensus 97.9 3.5E-05 7.5E-10 76.5 8.4 83 181-274 402-484 (935)
157 PF14617 CMS1: U3-containing 9 97.9 3.1E-05 6.7E-10 69.8 7.5 86 238-324 124-211 (252)
158 PF12340 DUF3638: Protein of u 97.9 0.00013 2.9E-09 64.6 10.8 151 168-328 4-186 (229)
159 PF09848 DUF2075: Uncharacteri 97.8 4.7E-05 1E-09 72.5 7.5 94 207-328 4-97 (352)
160 PF02562 PhoH: PhoH-like prote 97.8 5E-05 1.1E-09 66.5 5.8 59 188-252 3-61 (205)
161 KOG0388|consensus 97.7 7.5E-05 1.6E-09 74.7 6.8 123 192-327 570-708 (1185)
162 KOG0386|consensus 97.7 6.8E-05 1.5E-09 77.5 5.9 128 189-327 394-528 (1157)
163 COG0653 SecA Preprotein transl 97.6 0.0002 4.3E-09 73.8 8.7 127 191-327 80-213 (822)
164 PF13245 AAA_19: Part of AAA d 97.6 0.00028 6.1E-09 51.8 7.1 53 204-260 9-62 (76)
165 KOG0926|consensus 97.6 0.00024 5.2E-09 72.1 8.5 116 196-325 263-383 (1172)
166 COG0556 UvrB Helicase subunit 97.5 0.00021 4.5E-09 69.7 6.8 68 189-267 12-84 (663)
167 PF00580 UvrD-helicase: UvrD/R 97.5 0.00032 6.9E-09 64.9 7.9 70 190-265 1-70 (315)
168 KOG1805|consensus 97.5 0.0005 1.1E-08 71.2 9.6 136 171-327 655-809 (1100)
169 KOG1000|consensus 97.5 0.00075 1.6E-08 65.3 10.3 125 188-328 197-322 (689)
170 PRK10536 hypothetical protein; 97.5 0.00087 1.9E-08 60.6 10.1 61 185-251 55-115 (262)
171 KOG0922|consensus 97.4 0.0007 1.5E-08 67.6 9.4 118 194-325 56-174 (674)
172 TIGR01447 recD exodeoxyribonuc 97.4 0.0013 2.7E-08 66.8 11.0 70 191-263 147-216 (586)
173 TIGR01448 recD_rel helicase, p 97.4 0.0012 2.5E-08 68.8 11.0 66 187-258 321-386 (720)
174 PRK10875 recD exonuclease V su 97.3 0.00098 2.1E-08 67.8 9.5 70 191-264 154-223 (615)
175 PF02399 Herpes_ori_bp: Origin 97.3 0.00053 1.2E-08 70.4 7.5 108 203-327 47-155 (824)
176 TIGR02768 TraA_Ti Ti-type conj 97.3 0.0016 3.5E-08 67.9 11.0 62 188-257 351-413 (744)
177 TIGR02562 cas3_yersinia CRISPR 97.3 0.002 4.3E-08 68.1 11.2 81 191-277 410-498 (1110)
178 COG0553 HepA Superfamily II DN 97.3 0.0008 1.7E-08 71.2 8.6 134 188-327 337-485 (866)
179 PF13872 AAA_34: P-loop contai 97.3 0.0028 6.1E-08 58.3 10.6 141 170-328 24-186 (303)
180 PF05970 PIF1: PIF1-like helic 97.2 0.00042 9.1E-09 66.3 5.4 59 190-256 2-66 (364)
181 PRK13889 conjugal transfer rel 97.2 0.002 4.2E-08 68.8 10.7 61 188-256 345-406 (988)
182 KOG1131|consensus 97.2 0.0029 6.3E-08 61.7 10.5 73 187-263 14-90 (755)
183 KOG1133|consensus 97.2 0.0029 6.3E-08 63.6 10.3 42 188-229 14-59 (821)
184 KOG0925|consensus 97.0 0.0044 9.6E-08 60.0 9.3 88 166-260 24-111 (699)
185 TIGR00631 uvrb excinuclease AB 97.0 0.0061 1.3E-07 62.7 11.1 67 189-266 9-80 (655)
186 PF13401 AAA_22: AAA domain; P 96.9 0.00052 1.1E-08 55.1 2.4 18 203-220 3-20 (131)
187 cd00009 AAA The AAA+ (ATPases 96.8 0.0086 1.9E-07 48.0 8.6 17 203-219 18-34 (151)
188 PHA02533 17 large terminase pr 96.7 0.0054 1.2E-07 61.5 8.2 122 189-327 59-182 (534)
189 KOG0923|consensus 96.7 0.0058 1.3E-07 61.2 8.0 120 191-325 267-389 (902)
190 PRK04296 thymidine kinase; Pro 96.7 0.0067 1.5E-07 52.6 7.3 36 205-248 3-38 (190)
191 COG3587 Restriction endonuclea 96.6 0.0055 1.2E-07 63.0 7.4 48 205-258 75-122 (985)
192 smart00382 AAA ATPases associa 96.6 0.0039 8.5E-08 49.4 5.1 17 204-220 2-18 (148)
193 KOG0924|consensus 96.6 0.01 2.2E-07 59.8 8.7 116 194-325 361-479 (1042)
194 PRK14722 flhF flagellar biosyn 96.5 0.0089 1.9E-07 57.2 7.8 91 203-301 136-227 (374)
195 PRK13826 Dtr system oriT relax 96.5 0.036 7.7E-07 59.9 12.8 75 174-257 367-442 (1102)
196 COG2805 PilT Tfp pilus assembl 96.5 0.013 2.8E-07 53.9 8.1 53 160-232 99-152 (353)
197 TIGR01074 rep ATP-dependent DN 96.5 0.02 4.2E-07 59.3 10.6 70 190-265 2-71 (664)
198 PRK11054 helD DNA helicase IV; 96.4 0.017 3.7E-07 59.7 9.7 75 185-265 192-266 (684)
199 KOG0953|consensus 96.4 0.0022 4.9E-08 62.9 2.8 96 207-328 194-289 (700)
200 PRK05298 excinuclease ABC subu 96.3 0.025 5.4E-07 58.3 10.4 68 188-266 11-83 (652)
201 cd01122 GP4d_helicase GP4d_hel 96.3 0.014 3.1E-07 53.2 7.6 120 199-327 25-153 (271)
202 KOG1001|consensus 96.3 0.019 4E-07 59.1 8.8 114 205-327 153-267 (674)
203 PRK06995 flhF flagellar biosyn 96.2 0.031 6.8E-07 55.2 9.7 90 204-302 256-347 (484)
204 KOG4150|consensus 96.2 0.003 6.5E-08 62.2 2.4 139 182-326 279-424 (1034)
205 PRK10919 ATP-dependent DNA hel 96.1 0.017 3.7E-07 59.8 7.9 71 189-265 2-72 (672)
206 PF03354 Terminase_1: Phage Te 96.1 0.008 1.7E-07 59.7 5.2 125 192-328 1-137 (477)
207 PRK11889 flhF flagellar biosyn 96.0 0.049 1.1E-06 52.4 9.7 87 204-302 241-333 (436)
208 TIGR01075 uvrD DNA helicase II 96.0 0.027 5.8E-07 58.8 8.7 72 188-265 3-74 (715)
209 PRK11331 5-methylcytosine-spec 95.9 0.026 5.6E-07 55.2 7.6 32 190-221 180-211 (459)
210 PRK13833 conjugal transfer pro 95.8 0.029 6.2E-07 52.8 7.2 45 182-229 123-168 (323)
211 TIGR01425 SRP54_euk signal rec 95.8 0.091 2E-06 51.2 10.8 86 206-302 102-195 (429)
212 TIGR02785 addA_Gpos recombinat 95.7 0.047 1E-06 60.4 9.7 121 190-325 2-126 (1232)
213 PRK11773 uvrD DNA-dependent he 95.7 0.031 6.8E-07 58.4 7.7 72 188-265 8-79 (721)
214 TIGR00064 ftsY signal recognit 95.7 0.13 2.9E-06 47.2 10.9 88 204-302 72-167 (272)
215 PRK13894 conjugal transfer ATP 95.6 0.033 7.2E-07 52.3 6.9 48 179-229 124-172 (319)
216 cd01120 RecA-like_NTPases RecA 95.6 0.053 1.1E-06 44.5 7.4 38 207-252 2-39 (165)
217 TIGR01073 pcrA ATP-dependent D 95.6 0.078 1.7E-06 55.5 10.2 72 188-265 3-74 (726)
218 KOG0298|consensus 95.5 0.022 4.7E-07 61.0 5.7 100 203-305 373-483 (1394)
219 TIGR02760 TraI_TIGR conjugativ 95.5 0.096 2.1E-06 60.3 11.2 63 189-259 429-493 (1960)
220 cd00984 DnaB_C DnaB helicase C 95.5 0.024 5.3E-07 50.6 5.4 48 202-256 11-61 (242)
221 COG1875 NYN ribonuclease and A 95.5 0.036 7.9E-07 52.3 6.4 64 185-253 224-289 (436)
222 TIGR03499 FlhF flagellar biosy 95.3 0.045 9.7E-07 50.5 6.6 19 203-221 193-211 (282)
223 KOG1015|consensus 95.3 0.069 1.5E-06 55.9 8.3 116 204-327 696-834 (1567)
224 PRK08727 hypothetical protein; 95.3 0.07 1.5E-06 47.7 7.5 50 205-263 42-91 (233)
225 PRK07952 DNA replication prote 95.3 0.19 4.1E-06 45.4 10.3 42 205-255 100-141 (244)
226 PRK14723 flhF flagellar biosyn 95.2 0.094 2E-06 54.6 9.2 88 204-301 185-275 (767)
227 PRK12723 flagellar biosynthesi 95.2 0.069 1.5E-06 51.5 7.8 91 204-302 174-267 (388)
228 COG4962 CpaF Flp pilus assembl 95.2 0.046 1E-06 51.3 6.2 33 186-218 154-187 (355)
229 PRK14087 dnaA chromosomal repl 95.1 0.13 2.9E-06 50.7 9.5 51 204-261 141-191 (450)
230 COG1419 FlhF Flagellar GTP-bin 95.1 0.065 1.4E-06 51.4 7.0 89 202-299 201-291 (407)
231 TIGR02782 TrbB_P P-type conjug 95.0 0.077 1.7E-06 49.4 7.2 47 180-229 109-156 (299)
232 PRK05703 flhF flagellar biosyn 94.9 0.12 2.6E-06 50.5 8.6 88 203-300 220-310 (424)
233 PTZ00112 origin recognition co 94.9 0.17 3.6E-06 53.4 9.7 16 313-328 868-883 (1164)
234 PRK05973 replicative DNA helic 94.9 0.12 2.7E-06 46.4 7.9 67 188-264 49-115 (237)
235 PRK12727 flagellar biosynthesi 94.9 0.17 3.7E-06 50.6 9.4 20 202-221 348-367 (559)
236 PF05621 TniB: Bacterial TniB 94.8 0.073 1.6E-06 49.2 6.4 53 205-262 62-118 (302)
237 PRK12726 flagellar biosynthesi 94.8 0.15 3.3E-06 48.9 8.7 88 203-301 205-297 (407)
238 PF03796 DnaB_C: DnaB-like hel 94.8 0.12 2.6E-06 46.9 7.8 110 204-327 19-143 (259)
239 TIGR01547 phage_term_2 phage t 94.8 0.052 1.1E-06 52.5 5.7 108 206-326 3-113 (396)
240 PF06733 DEAD_2: DEAD_2; Inte 94.8 0.017 3.7E-07 49.2 2.1 50 279-328 108-159 (174)
241 PRK14721 flhF flagellar biosyn 94.8 0.07 1.5E-06 51.9 6.5 92 203-302 190-282 (420)
242 PHA03333 putative ATPase subun 94.7 0.23 5E-06 50.8 10.0 73 187-266 167-242 (752)
243 PRK11823 DNA repair protein Ra 94.6 0.24 5.2E-06 48.8 9.9 53 203-264 79-131 (446)
244 TIGR03881 KaiC_arch_4 KaiC dom 94.4 0.34 7.3E-06 42.9 9.6 52 203-263 19-70 (229)
245 cd01124 KaiC KaiC is a circadi 94.4 0.099 2.1E-06 44.5 5.9 49 207-264 2-50 (187)
246 TIGR03015 pepcterm_ATPase puta 94.4 0.4 8.7E-06 43.4 10.2 32 189-220 23-59 (269)
247 PF05127 Helicase_RecD: Helica 94.4 0.011 2.4E-07 50.6 -0.1 102 208-326 1-102 (177)
248 COG3973 Superfamily I DNA and 94.3 0.14 3.1E-06 51.3 7.4 92 172-265 187-285 (747)
249 TIGR00580 mfd transcription-re 94.3 0.86 1.9E-05 49.0 13.8 80 239-326 659-742 (926)
250 PF05876 Terminase_GpA: Phage 94.3 0.037 8E-07 56.0 3.5 122 189-327 16-147 (557)
251 PRK08506 replicative DNA helic 94.3 0.26 5.6E-06 48.9 9.3 113 203-327 191-315 (472)
252 TIGR03600 phage_DnaB phage rep 94.2 0.27 5.8E-06 48.0 9.2 115 202-327 192-318 (421)
253 TIGR02881 spore_V_K stage V sp 94.1 0.16 3.6E-06 46.1 7.0 17 204-220 42-58 (261)
254 PRK00411 cdc6 cell division co 94.1 0.16 3.5E-06 48.8 7.3 17 204-220 55-71 (394)
255 PF02534 T4SS-DNA_transf: Type 94.0 0.069 1.5E-06 52.8 4.8 50 205-264 45-94 (469)
256 PRK05748 replicative DNA helic 94.0 0.32 7E-06 47.9 9.3 112 203-326 202-326 (448)
257 TIGR02525 plasmid_TraJ plasmid 94.0 0.18 4E-06 48.3 7.3 26 205-231 150-175 (372)
258 PRK08181 transposase; Validate 94.0 0.16 3.4E-06 46.6 6.5 48 201-257 103-150 (269)
259 cd01126 TraG_VirD4 The TraG/Tr 93.9 0.053 1.1E-06 52.2 3.6 48 206-263 1-48 (384)
260 PRK07004 replicative DNA helic 93.9 0.19 4.2E-06 49.6 7.6 114 203-327 212-337 (460)
261 PRK08006 replicative DNA helic 93.9 0.66 1.4E-05 46.0 11.2 114 204-327 224-349 (471)
262 PF13481 AAA_25: AAA domain; P 93.9 0.23 5E-06 42.5 7.2 67 197-265 24-94 (193)
263 COG1474 CDC6 Cdc6-related prot 93.8 0.34 7.4E-06 46.4 8.9 24 197-220 33-58 (366)
264 TIGR03877 thermo_KaiC_1 KaiC d 93.8 0.15 3.2E-06 45.7 6.1 53 203-264 20-72 (237)
265 PRK13900 type IV secretion sys 93.7 0.17 3.7E-06 47.8 6.6 29 200-229 156-184 (332)
266 COG1484 DnaC DNA replication p 93.7 0.13 2.7E-06 46.8 5.4 50 203-261 104-153 (254)
267 PRK13851 type IV secretion sys 93.7 0.088 1.9E-06 50.0 4.5 29 199-228 157-185 (344)
268 PRK12724 flagellar biosynthesi 93.7 0.38 8.2E-06 46.8 8.8 19 204-222 223-241 (432)
269 COG4626 Phage terminase-like p 93.6 0.28 6E-06 48.8 8.0 74 188-266 60-144 (546)
270 PRK13764 ATPase; Provisional 93.6 0.17 3.6E-06 51.5 6.6 27 203-230 256-282 (602)
271 TIGR02237 recomb_radB DNA repa 93.6 0.63 1.4E-05 40.5 9.6 39 203-249 11-49 (209)
272 PRK00771 signal recognition pa 93.5 0.37 8.1E-06 47.2 8.7 88 204-302 95-188 (437)
273 PF01695 IstB_IS21: IstB-like 93.5 0.17 3.6E-06 43.4 5.6 49 201-258 44-92 (178)
274 COG0470 HolB ATPase involved i 93.5 0.25 5.4E-06 45.9 7.3 28 204-232 23-51 (325)
275 PRK04537 ATP-dependent RNA hel 93.5 0.62 1.3E-05 47.4 10.6 74 239-322 256-333 (572)
276 PRK06904 replicative DNA helic 93.5 0.71 1.5E-05 45.8 10.7 114 204-327 221-347 (472)
277 TIGR02928 orc1/cdc6 family rep 93.4 0.29 6.3E-06 46.5 7.7 24 205-229 41-64 (365)
278 cd01121 Sms Sms (bacterial rad 93.4 0.62 1.3E-05 44.8 9.9 53 203-264 81-133 (372)
279 TIGR02524 dot_icm_DotB Dot/Icm 93.4 0.24 5.2E-06 47.3 7.1 27 203-230 133-159 (358)
280 PRK14974 cell division protein 93.4 0.53 1.1E-05 44.6 9.3 85 205-301 141-234 (336)
281 TIGR03420 DnaA_homol_Hda DnaA 93.4 0.25 5.4E-06 43.4 6.8 18 203-220 37-54 (226)
282 PRK08903 DnaA regulatory inact 93.4 0.25 5.5E-06 43.7 6.8 16 203-218 41-56 (227)
283 PRK10689 transcription-repair 93.4 0.4 8.7E-06 52.6 9.4 79 240-326 809-891 (1147)
284 PRK06921 hypothetical protein; 93.4 0.47 1E-05 43.4 8.6 48 203-258 116-163 (266)
285 TIGR00665 DnaB replicative DNA 93.3 0.4 8.6E-06 47.0 8.7 113 203-327 194-318 (434)
286 PRK06835 DNA replication prote 93.3 0.26 5.6E-06 46.5 7.0 46 203-258 182-228 (329)
287 PF06745 KaiC: KaiC; InterPro 93.3 0.15 3.3E-06 45.0 5.2 53 203-264 18-71 (226)
288 KOG0989|consensus 93.3 0.08 1.7E-06 48.9 3.4 19 205-223 58-76 (346)
289 PRK08116 hypothetical protein; 93.3 1.3 2.8E-05 40.5 11.4 45 205-258 115-159 (268)
290 PRK05595 replicative DNA helic 93.2 0.5 1.1E-05 46.5 9.1 113 204-327 201-324 (444)
291 TIGR00362 DnaA chromosomal rep 93.2 0.42 9.1E-06 46.4 8.5 47 204-257 136-182 (405)
292 PRK12402 replication factor C 93.2 0.33 7.1E-06 45.5 7.5 15 206-220 38-52 (337)
293 PRK10416 signal recognition pa 93.1 1 2.3E-05 42.3 10.7 88 204-302 114-209 (318)
294 PRK13897 type IV secretion sys 93.1 0.13 2.9E-06 52.3 5.0 49 205-263 159-207 (606)
295 COG0552 FtsY Signal recognitio 93.0 0.45 9.8E-06 44.6 7.9 86 207-303 142-235 (340)
296 PRK00149 dnaA chromosomal repl 93.0 0.51 1.1E-05 46.5 8.9 49 205-260 149-197 (450)
297 PF03237 Terminase_6: Terminas 93.0 0.78 1.7E-05 42.9 9.9 101 208-326 1-109 (384)
298 PRK08840 replicative DNA helic 92.9 0.95 2.1E-05 44.8 10.6 115 203-327 216-342 (464)
299 PRK08760 replicative DNA helic 92.8 0.5 1.1E-05 46.9 8.4 113 204-327 229-352 (476)
300 COG0630 VirB11 Type IV secreto 92.7 0.14 2.9E-06 48.1 4.1 41 188-229 126-167 (312)
301 COG1444 Predicted P-loop ATPas 92.7 0.41 8.9E-06 49.6 7.8 83 182-270 207-291 (758)
302 PRK12377 putative replication 92.6 0.42 9E-06 43.3 7.1 46 204-258 101-146 (248)
303 PF12846 AAA_10: AAA-like doma 92.6 0.38 8.3E-06 43.8 7.0 42 205-254 2-43 (304)
304 KOG0344|consensus 92.6 2.2 4.8E-05 42.7 12.4 95 214-323 367-465 (593)
305 TIGR00959 ffh signal recogniti 92.5 0.69 1.5E-05 45.3 8.8 86 206-301 101-194 (428)
306 PF00448 SRP54: SRP54-type pro 92.5 0.28 6E-06 42.8 5.6 60 207-277 4-65 (196)
307 KOG0331|consensus 92.5 0.76 1.6E-05 45.7 9.1 72 239-320 340-415 (519)
308 PF10412 TrwB_AAD_bind: Type I 92.5 0.22 4.8E-06 48.1 5.4 33 199-232 10-42 (386)
309 PRK09165 replicative DNA helic 92.4 0.98 2.1E-05 45.2 10.1 119 204-327 217-354 (497)
310 PF05496 RuvB_N: Holliday junc 92.4 0.33 7.2E-06 43.2 5.9 14 206-219 52-65 (233)
311 PRK05636 replicative DNA helic 92.4 0.46 9.9E-06 47.6 7.6 108 205-327 265-388 (505)
312 PRK08769 DNA polymerase III su 92.3 2.4 5.1E-05 39.9 11.9 119 187-306 2-161 (319)
313 PRK11192 ATP-dependent RNA hel 92.3 0.94 2E-05 44.3 9.7 72 239-320 244-319 (434)
314 PRK08533 flagellar accessory p 92.3 0.38 8.2E-06 43.0 6.3 54 202-264 22-75 (230)
315 PRK06526 transposase; Provisio 92.2 0.42 9E-06 43.4 6.6 49 199-256 93-141 (254)
316 COG3421 Uncharacterized protei 92.2 0.37 8E-06 48.4 6.5 112 209-327 2-125 (812)
317 PF00308 Bac_DnaA: Bacterial d 92.0 0.61 1.3E-05 41.3 7.3 48 205-260 35-83 (219)
318 COG3972 Superfamily I DNA and 92.0 0.51 1.1E-05 46.4 7.1 80 178-265 152-231 (660)
319 PRK10867 signal recognition pa 91.9 0.76 1.7E-05 45.0 8.4 86 206-301 102-195 (433)
320 PRK04328 hypothetical protein; 91.9 0.39 8.5E-06 43.4 6.0 53 203-264 22-74 (249)
321 TIGR03878 thermo_KaiC_2 KaiC d 91.9 0.53 1.2E-05 42.8 7.0 37 203-247 35-71 (259)
322 PF00437 T2SE: Type II/IV secr 91.9 0.24 5.1E-06 45.1 4.6 29 201-230 124-152 (270)
323 PRK06321 replicative DNA helic 91.7 1.2 2.7E-05 44.1 9.8 111 205-327 226-349 (472)
324 PRK04837 ATP-dependent RNA hel 91.6 1.2 2.6E-05 43.4 9.6 71 240-320 255-329 (423)
325 PTZ00110 helicase; Provisional 91.6 1.4 3E-05 44.6 10.3 72 239-320 376-451 (545)
326 cd01130 VirB11-like_ATPase Typ 91.6 0.51 1.1E-05 40.5 6.2 31 190-220 10-41 (186)
327 KOG3089|consensus 91.5 0.035 7.7E-07 48.4 -1.1 33 290-322 196-228 (271)
328 PHA02535 P terminase ATPase su 91.5 0.73 1.6E-05 46.5 7.9 86 174-266 123-208 (581)
329 KOG0333|consensus 91.5 1.1 2.4E-05 44.4 8.7 71 239-319 516-590 (673)
330 cd01127 TrwB Bacterial conjuga 91.4 0.25 5.4E-06 48.1 4.5 33 198-231 36-68 (410)
331 PRK13850 type IV secretion sys 91.4 0.2 4.2E-06 51.8 3.9 49 205-263 140-188 (670)
332 PRK09183 transposase/IS protei 91.3 0.55 1.2E-05 42.8 6.4 47 201-256 99-145 (259)
333 COG1435 Tdk Thymidine kinase [ 91.3 1.5 3.3E-05 38.0 8.6 89 207-327 7-95 (201)
334 cd03115 SRP The signal recogni 91.2 2.5 5.5E-05 35.4 10.0 84 207-301 3-94 (173)
335 PRK07994 DNA polymerase III su 91.1 1.7 3.7E-05 44.7 10.3 15 313-327 118-132 (647)
336 PRK09376 rho transcription ter 91.1 1.4 3.1E-05 42.5 9.1 17 203-219 168-184 (416)
337 PRK10436 hypothetical protein; 91.0 0.89 1.9E-05 45.0 7.9 38 192-230 204-243 (462)
338 COG0467 RAD55 RecA-superfamily 91.0 0.5 1.1E-05 42.8 5.8 54 203-265 22-75 (260)
339 PTZ00293 thymidine kinase; Pro 91.0 1.1 2.4E-05 39.4 7.7 39 204-250 4-42 (211)
340 PRK14949 DNA polymerase III su 90.9 1.1 2.5E-05 47.5 8.9 15 313-327 118-132 (944)
341 PRK09112 DNA polymerase III su 90.9 1.1 2.3E-05 42.8 8.0 31 201-232 39-72 (351)
342 PRK06645 DNA polymerase III su 90.8 1.2 2.5E-05 44.7 8.6 17 205-221 44-60 (507)
343 PRK10590 ATP-dependent RNA hel 90.8 1.9 4.2E-05 42.5 10.1 72 239-320 244-319 (456)
344 PF04665 Pox_A32: Poxvirus A32 90.8 0.35 7.5E-06 43.5 4.4 23 206-229 15-37 (241)
345 PRK11776 ATP-dependent RNA hel 90.7 1.5 3.3E-05 43.2 9.3 72 240-321 242-317 (460)
346 cd01129 PulE-GspE PulE/GspE Th 90.7 0.52 1.1E-05 43.1 5.6 38 192-230 66-105 (264)
347 cd01131 PilT Pilus retraction 90.7 0.35 7.7E-06 42.0 4.3 23 207-230 4-26 (198)
348 TIGR01970 DEAH_box_HrpB ATP-de 90.7 3.2 6.8E-05 44.2 12.0 73 240-319 209-285 (819)
349 PF13173 AAA_14: AAA domain 90.5 1.2 2.6E-05 35.6 7.0 17 203-219 1-17 (128)
350 PHA00729 NTP-binding motif con 90.4 1.1 2.3E-05 40.0 7.1 14 206-219 19-32 (226)
351 PRK14712 conjugal transfer nic 90.4 1 2.3E-05 50.7 8.5 63 189-257 835-901 (1623)
352 COG0513 SrmB Superfamily II DN 90.4 2.1 4.5E-05 43.0 10.1 82 223-319 261-346 (513)
353 cd00544 CobU Adenosylcobinamid 90.3 1.1 2.4E-05 38.0 6.9 45 207-262 2-46 (169)
354 PRK14956 DNA polymerase III su 90.2 0.95 2E-05 44.9 7.2 16 206-221 42-57 (484)
355 TIGR00767 rho transcription te 90.2 0.83 1.8E-05 44.2 6.6 18 203-220 167-184 (415)
356 cd01128 rho_factor Transcripti 90.1 0.79 1.7E-05 41.5 6.2 19 201-219 13-31 (249)
357 PRK14961 DNA polymerase III su 90.1 1.8 3.9E-05 41.4 8.9 15 206-220 40-54 (363)
358 PRK13822 conjugal transfer cou 90.0 0.46 1E-05 48.9 5.1 50 204-263 224-273 (641)
359 PHA03368 DNA packaging termina 90.0 1 2.3E-05 46.1 7.4 110 202-327 252-365 (738)
360 TIGR03743 SXT_TraD conjugative 89.8 0.87 1.9E-05 46.9 6.9 55 203-265 175-231 (634)
361 cd01393 recA_like RecA is a b 89.8 1.3 2.9E-05 38.8 7.4 46 203-250 18-63 (226)
362 PRK13876 conjugal transfer cou 89.7 0.34 7.5E-06 50.0 3.9 48 205-262 145-192 (663)
363 PRK13700 conjugal transfer pro 89.7 0.53 1.1E-05 48.7 5.2 54 176-232 157-212 (732)
364 KOG2004|consensus 89.7 1.9 4.1E-05 44.5 8.9 82 203-327 437-518 (906)
365 PRK07003 DNA polymerase III su 89.7 1.5 3.2E-05 45.8 8.4 15 313-327 118-132 (830)
366 KOG1806|consensus 89.6 0.7 1.5E-05 49.0 5.9 72 186-263 735-806 (1320)
367 TIGR00643 recG ATP-dependent D 89.5 6 0.00013 40.8 12.8 80 239-326 447-538 (630)
368 TIGR03880 KaiC_arch_3 KaiC dom 89.5 0.93 2E-05 40.0 6.1 53 203-264 15-67 (224)
369 cd03114 ArgK-like The function 89.5 7.5 0.00016 32.0 11.2 14 207-220 2-15 (148)
370 TIGR02533 type_II_gspE general 89.5 0.55 1.2E-05 46.8 5.0 38 191-229 227-266 (486)
371 TIGR02655 circ_KaiC circadian 89.5 0.78 1.7E-05 45.7 6.2 54 203-265 262-315 (484)
372 COG0210 UvrD Superfamily I DNA 89.4 1.2 2.5E-05 46.1 7.6 71 189-265 2-72 (655)
373 TIGR00635 ruvB Holliday juncti 89.4 0.42 9.2E-06 44.2 4.0 15 205-219 31-45 (305)
374 TIGR03754 conj_TOL_TraD conjug 89.4 1.4 3.1E-05 45.2 8.0 55 203-265 179-235 (643)
375 PRK13880 conjugal transfer cou 89.3 0.29 6.2E-06 50.4 3.0 46 205-260 176-221 (636)
376 PRK07471 DNA polymerase III su 89.3 1.7 3.6E-05 41.7 8.1 27 206-233 43-69 (365)
377 TIGR03819 heli_sec_ATPase heli 89.3 0.97 2.1E-05 42.9 6.4 39 179-219 154-193 (340)
378 PRK14963 DNA polymerase III su 89.3 1.3 2.9E-05 44.3 7.6 23 207-230 39-61 (504)
379 PRK11664 ATP-dependent RNA hel 89.2 4.8 0.0001 42.8 12.0 73 240-319 212-288 (812)
380 TIGR02640 gas_vesic_GvpN gas v 89.2 0.49 1.1E-05 43.1 4.2 25 196-220 13-37 (262)
381 TIGR00416 sms DNA repair prote 89.2 2.1 4.6E-05 42.3 8.9 53 203-264 93-145 (454)
382 PRK12323 DNA polymerase III su 89.2 1 2.3E-05 46.2 6.7 16 312-327 122-137 (700)
383 COG1219 ClpX ATP-dependent pro 89.1 0.37 8.1E-06 44.9 3.3 27 202-230 95-121 (408)
384 TIGR02760 TraI_TIGR conjugativ 89.1 1 2.2E-05 52.2 7.4 64 188-257 1018-1085(1960)
385 TIGR00763 lon ATP-dependent pr 89.1 1.4 3E-05 46.6 7.9 18 203-220 346-363 (775)
386 PF01935 DUF87: Domain of unkn 89.0 0.73 1.6E-05 40.7 5.1 26 204-230 23-48 (229)
387 cd01125 repA Hexameric Replica 89.0 2.8 6.1E-05 37.4 8.9 57 207-265 4-65 (239)
388 PRK00080 ruvB Holliday junctio 88.9 1.4 3.1E-05 41.3 7.2 17 204-220 51-67 (328)
389 TIGR00614 recQ_fam ATP-depende 88.9 4.4 9.5E-05 40.1 11.0 73 239-321 225-301 (470)
390 PRK14958 DNA polymerase III su 88.9 2.1 4.5E-05 43.0 8.7 16 206-221 40-55 (509)
391 PRK08691 DNA polymerase III su 88.8 1.8 3.9E-05 44.8 8.3 18 205-222 39-56 (709)
392 PRK08939 primosomal protein Dn 88.8 0.89 1.9E-05 42.5 5.7 46 203-257 155-200 (306)
393 PRK13767 ATP-dependent helicas 88.8 4 8.6E-05 43.8 11.2 75 240-320 284-364 (876)
394 PRK14960 DNA polymerase III su 88.7 0.64 1.4E-05 47.8 4.9 16 206-221 39-54 (702)
395 KOG0991|consensus 88.7 0.42 9E-06 42.7 3.2 18 205-222 49-66 (333)
396 KOG0744|consensus 88.7 2.5 5.5E-05 39.7 8.3 69 203-275 176-256 (423)
397 PRK14950 DNA polymerase III su 88.5 1.7 3.7E-05 44.4 8.0 17 205-221 39-55 (585)
398 COG0466 Lon ATP-dependent Lon 88.5 0.98 2.1E-05 46.4 6.0 82 203-327 349-430 (782)
399 COG1074 RecB ATP-dependent exo 88.5 0.95 2E-05 49.9 6.4 57 203-262 15-71 (1139)
400 PRK06871 DNA polymerase III su 88.5 8.4 0.00018 36.3 12.0 87 191-278 4-117 (325)
401 PRK13709 conjugal transfer nic 88.5 1.8 3.8E-05 49.5 8.5 66 188-257 966-1033(1747)
402 PRK11634 ATP-dependent RNA hel 88.4 3.1 6.8E-05 42.9 9.8 71 240-320 245-319 (629)
403 COG2256 MGS1 ATPase related to 88.3 1.9 4.2E-05 41.4 7.5 18 205-222 49-66 (436)
404 PRK08699 DNA polymerase III su 88.2 6.1 0.00013 37.2 10.9 58 191-249 3-80 (325)
405 PRK01297 ATP-dependent RNA hel 88.1 3.5 7.6E-05 40.8 9.7 71 240-320 335-409 (475)
406 PRK05642 DNA replication initi 88.1 1.5 3.3E-05 39.2 6.5 43 205-256 46-88 (234)
407 TIGR01420 pilT_fam pilus retra 88.0 0.88 1.9E-05 43.2 5.2 26 203-229 121-146 (343)
408 PRK14948 DNA polymerase III su 88.0 1.8 3.8E-05 44.6 7.6 17 205-221 39-55 (620)
409 TIGR02767 TraG-Ti Ti-type conj 87.9 0.59 1.3E-05 47.9 4.2 49 205-263 212-260 (623)
410 PHA03372 DNA packaging termina 87.9 2.4 5.2E-05 43.0 8.2 105 203-326 201-311 (668)
411 PRK05707 DNA polymerase III su 87.9 3.3 7.1E-05 39.1 8.9 116 190-306 4-154 (328)
412 PRK05896 DNA polymerase III su 87.8 1.1 2.4E-05 45.6 6.0 26 205-231 39-64 (605)
413 PF14516 AAA_35: AAA-like doma 87.6 1.9 4.1E-05 40.7 7.2 115 192-328 18-141 (331)
414 KOG1016|consensus 87.6 4.5 9.6E-05 42.2 9.9 92 203-304 281-388 (1387)
415 PHA02544 44 clamp loader, smal 87.6 1.6 3.4E-05 40.6 6.6 14 206-219 44-58 (316)
416 cd00079 HELICc Helicase superf 87.5 5.4 0.00012 31.0 8.9 76 239-324 27-106 (131)
417 PRK04301 radA DNA repair and r 87.5 6.6 0.00014 36.7 10.7 59 203-263 101-160 (317)
418 PHA02542 41 41 helicase; Provi 87.5 2.4 5.2E-05 42.1 8.0 34 206-247 192-225 (473)
419 PRK05563 DNA polymerase III su 87.5 4.5 9.7E-05 41.1 10.1 18 205-222 39-56 (559)
420 cd01394 radB RadB. The archaea 87.4 1 2.2E-05 39.5 4.9 36 203-246 18-53 (218)
421 KOG1533|consensus 87.3 0.56 1.2E-05 41.9 3.1 24 207-231 5-28 (290)
422 TIGR02012 tigrfam_recA protein 87.3 1.5 3.1E-05 41.3 6.1 28 203-231 54-81 (321)
423 COG2804 PulE Type II secretory 87.3 0.86 1.9E-05 45.0 4.7 40 191-231 243-284 (500)
424 PRK10917 ATP-dependent DNA hel 87.2 12 0.00026 39.0 13.4 80 239-326 470-561 (681)
425 TIGR00631 uvrb excinuclease AB 87.2 3.7 8E-05 42.6 9.5 77 239-325 441-521 (655)
426 PRK07773 replicative DNA helic 87.1 1.6 3.6E-05 46.8 7.1 113 204-327 217-340 (886)
427 PRK06749 replicative DNA helic 87.1 3.7 8E-05 40.3 9.0 37 203-247 185-221 (428)
428 PF02456 Adeno_IVa2: Adenoviru 87.0 2.4 5.1E-05 39.5 7.0 39 208-252 91-129 (369)
429 PRK06731 flhF flagellar biosyn 87.0 3.4 7.3E-05 37.9 8.2 21 203-223 74-94 (270)
430 TIGR02788 VirB11 P-type DNA tr 87.0 0.93 2E-05 42.3 4.6 19 201-219 141-159 (308)
431 TIGR02538 type_IV_pilB type IV 86.9 0.86 1.9E-05 46.3 4.6 37 192-229 302-340 (564)
432 PF13555 AAA_29: P-loop contai 86.8 1 2.2E-05 31.5 3.6 32 197-230 16-47 (62)
433 PF01443 Viral_helicase1: Vira 86.7 0.42 9.2E-06 42.1 2.1 13 207-219 1-13 (234)
434 COG1086 Predicted nucleoside-d 86.6 6.2 0.00013 39.7 10.2 92 189-295 235-330 (588)
435 PRK14965 DNA polymerase III su 86.6 3.2 7E-05 42.3 8.6 15 207-221 41-55 (576)
436 PRK14969 DNA polymerase III su 86.4 3 6.5E-05 42.0 8.2 16 206-221 40-55 (527)
437 cd01123 Rad51_DMC1_radA Rad51_ 86.4 5.7 0.00012 35.0 9.2 44 203-248 18-61 (235)
438 KOG0741|consensus 86.3 3 6.5E-05 41.7 7.7 108 161-273 210-329 (744)
439 TIGR02759 TraD_Ftype type IV c 86.1 1.6 3.5E-05 44.4 6.1 30 202-232 174-203 (566)
440 PRK04195 replication factor C 86.0 2.2 4.8E-05 42.5 7.0 16 204-219 39-54 (482)
441 PRK14952 DNA polymerase III su 86.0 2.5 5.4E-05 43.1 7.4 16 312-327 116-131 (584)
442 TIGR03689 pup_AAA proteasome A 86.0 2.1 4.4E-05 42.9 6.6 17 204-220 216-232 (512)
443 PTZ00424 helicase 45; Provisio 85.9 6.3 0.00014 37.8 10.0 71 240-320 267-341 (401)
444 PRK11057 ATP-dependent DNA hel 85.8 3.1 6.7E-05 42.7 8.1 72 239-320 235-310 (607)
445 TIGR03744 traC_PFL_4706 conjug 85.8 2.2 4.9E-05 45.8 7.3 40 205-251 476-515 (893)
446 PRK00440 rfc replication facto 85.7 4.1 8.9E-05 37.6 8.3 15 206-220 40-54 (319)
447 COG5008 PilU Tfp pilus assembl 85.6 0.73 1.6E-05 42.0 3.0 25 203-228 125-150 (375)
448 PRK05800 cobU adenosylcobinami 85.5 4.8 0.0001 34.1 7.9 15 206-220 3-17 (170)
449 KOG0741|consensus 85.5 3.6 7.9E-05 41.1 7.8 69 171-249 493-573 (744)
450 PRK06067 flagellar accessory p 85.4 2.7 5.8E-05 37.3 6.6 53 203-264 24-76 (234)
451 PRK09694 helicase Cas3; Provis 85.4 6 0.00013 42.4 10.1 76 239-322 559-646 (878)
452 TIGR02655 circ_KaiC circadian 85.3 1.9 4.1E-05 43.0 6.1 54 203-265 20-74 (484)
453 TIGR02639 ClpA ATP-dependent C 85.2 1.4 3E-05 46.2 5.3 17 204-220 203-219 (731)
454 PLN00206 DEAD-box ATP-dependen 85.1 3.9 8.4E-05 41.1 8.3 72 240-320 367-442 (518)
455 PF12775 AAA_7: P-loop contain 85.0 0.53 1.2E-05 43.2 1.9 19 201-219 30-48 (272)
456 PRK14955 DNA polymerase III su 85.0 6.4 0.00014 38.1 9.5 16 206-221 40-55 (397)
457 KOG0330|consensus 85.0 4.1 9E-05 39.0 7.7 70 240-319 300-373 (476)
458 COG4098 comFA Superfamily II D 84.9 7.8 0.00017 36.7 9.3 81 239-327 304-386 (441)
459 PLN03187 meiotic recombination 84.7 11 0.00024 35.8 10.7 58 204-263 126-184 (344)
460 PRK14951 DNA polymerase III su 84.6 2.1 4.6E-05 43.9 6.2 15 313-327 123-137 (618)
461 TIGR02784 addA_alphas double-s 84.5 2.7 5.9E-05 46.5 7.4 56 204-264 10-65 (1141)
462 COG0305 DnaB Replicative DNA h 84.4 5.3 0.00011 39.1 8.5 113 203-327 194-319 (435)
463 PF01580 FtsK_SpoIIIE: FtsK/Sp 84.4 1.9 4.2E-05 37.3 5.1 27 204-231 38-64 (205)
464 PRK08084 DNA replication initi 84.3 2.1 4.5E-05 38.2 5.4 17 203-219 44-60 (235)
465 PRK04914 ATP-dependent helicas 84.2 7.6 0.00016 42.0 10.3 72 240-320 493-570 (956)
466 PRK09361 radB DNA repair and r 84.2 1.9 4.1E-05 38.0 5.0 37 203-247 22-58 (225)
467 PF00625 Guanylate_kin: Guanyl 83.9 12 0.00026 31.7 9.8 17 203-219 1-17 (183)
468 PRK09302 circadian clock prote 83.7 2.2 4.8E-05 42.7 5.8 54 203-264 30-83 (509)
469 cd00983 recA RecA is a bacter 83.6 2.7 5.9E-05 39.5 6.0 39 203-249 54-92 (325)
470 KOG0341|consensus 83.5 3.7 8E-05 39.4 6.7 56 239-298 420-479 (610)
471 PRK14954 DNA polymerase III su 83.5 2.5 5.5E-05 43.4 6.2 16 206-221 40-55 (620)
472 TIGR01389 recQ ATP-dependent D 83.3 6 0.00013 40.4 8.9 71 240-320 224-298 (591)
473 TIGR02974 phageshock_pspF psp 83.2 5.2 0.00011 37.8 7.8 27 194-220 12-38 (329)
474 PRK06893 DNA replication initi 83.2 1.7 3.7E-05 38.6 4.3 15 205-219 40-54 (229)
475 KOG0780|consensus 83.1 7.3 0.00016 37.5 8.5 86 207-303 104-197 (483)
476 PRK14959 DNA polymerase III su 82.9 3.8 8.2E-05 42.0 7.1 18 205-222 39-56 (624)
477 PHA00350 putative assembly pro 82.9 2.2 4.7E-05 41.3 5.1 17 207-223 4-20 (399)
478 PRK09302 circadian clock prote 82.9 2.7 5.9E-05 42.1 6.1 53 203-264 272-324 (509)
479 TIGR02746 TraC-F-type type-IV 82.7 3 6.5E-05 44.2 6.6 40 205-252 431-470 (797)
480 COG0593 DnaA ATPase involved i 82.7 4.3 9.3E-05 39.4 7.0 41 204-250 113-153 (408)
481 PF05729 NACHT: NACHT domain 82.6 2.7 5.9E-05 34.3 5.1 25 207-232 3-27 (166)
482 KOG2227|consensus 82.5 2.6 5.7E-05 41.3 5.4 52 203-260 174-226 (529)
483 PF03205 MobB: Molybdopterin g 82.5 2.4 5.2E-05 34.7 4.6 24 207-231 3-26 (140)
484 PF02302 PTS_IIB: PTS system, 82.4 1.9 4.2E-05 32.0 3.7 57 242-301 1-58 (90)
485 PRK09354 recA recombinase A; P 82.4 3.2 6.9E-05 39.5 6.0 28 203-231 59-86 (349)
486 PF09439 SRPRB: Signal recogni 82.3 1 2.2E-05 38.7 2.4 21 204-224 3-23 (181)
487 COG3451 VirB4 Type IV secretor 82.3 1.8 4E-05 45.7 4.8 14 205-218 437-450 (796)
488 PRK07993 DNA polymerase III su 82.2 17 0.00036 34.5 10.8 88 190-278 3-118 (334)
489 PRK08451 DNA polymerase III su 82.1 8 0.00017 39.0 8.9 16 312-327 115-130 (535)
490 PRK06090 DNA polymerase III su 81.9 15 0.00032 34.5 10.2 116 190-307 4-157 (319)
491 COG2255 RuvB Holliday junction 81.7 4.5 9.8E-05 37.3 6.4 28 296-327 89-116 (332)
492 TIGR01587 cas3_core CRISPR-ass 81.6 6.5 0.00014 37.1 7.9 58 239-298 221-286 (358)
493 TIGR02238 recomb_DMC1 meiotic 81.5 14 0.0003 34.6 9.9 58 204-263 96-154 (313)
494 TIGR03158 cas3_cyano CRISPR-as 81.3 5.6 0.00012 37.9 7.3 72 239-321 271-342 (357)
495 PHA00012 I assembly protein 81.3 9.2 0.0002 36.1 8.4 23 207-229 4-26 (361)
496 PRK06964 DNA polymerase III su 81.3 19 0.00041 34.2 10.7 58 191-249 3-80 (342)
497 TIGR00602 rad24 checkpoint pro 81.0 6 0.00013 40.8 7.8 46 167-220 81-126 (637)
498 TIGR02236 recomb_radA DNA repa 80.9 2.7 5.9E-05 39.1 5.0 44 203-248 94-137 (310)
499 TIGR00150 HI0065_YjeE ATPase, 80.8 1.5 3.3E-05 35.7 2.8 44 201-255 19-62 (133)
500 PRK05298 excinuclease ABC subu 80.5 20 0.00044 37.2 11.6 76 239-324 445-524 (652)
No 1
>KOG0339|consensus
Probab=100.00 E-value=1.5e-61 Score=452.50 Aligned_cols=325 Identities=59% Similarity=0.986 Sum_probs=292.4
Q ss_pred CCCCCCCCCCccCCCCCCCCCCCCChHHHHHhhhhHHHHHhhhccccccccc--------ccCccCCCCCccchHHHHhh
Q psy17644 5 EYIPAPGSPSYKGNNASADTDSDEDPLDAFMKGIDKEVKQEAKGVKTKKIEE--------VKGIRDDIDHEDDEESYYRY 76 (330)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~l~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~e~~~~~~~~~ 76 (330)
+|-..+..|..........+.++.||+|+||+.+....+++++...+++.+. ....+.+++++++.+.++.+
T Consensus 54 ey~eddd~p~~~s~~~a~~~~de~d~ldafMA~~~d~~~sd~~~~e~kk~eRkn~dd~~p~~~vr~dI~~e~aae~~~ky 133 (731)
T KOG0339|consen 54 EYEEDDDIPEGGSAAAAGGEVDEIDPLDAFMAKIEDQAQSDKKPLEQKKKERKNDDDDDPTATVRADIDEEDAAEALFKY 133 (731)
T ss_pred ccccccccccccchhhccCCCCCCCCcchhhhhhhhhhhccCCccchHHHhhhccCCCccchhhhcchhhHHhHHHHHHH
Confidence 4444444443333334455677889999999999998877766542222111 22456788889999999999
Q ss_pred hhcCCCCCCCCCCCccccccccCCCCCCCccccCCCCCCCCCCCccchhhhhhhcCCCChhhhccCHHHHHHHHHHcCcE
Q psy17644 77 MEENPNAGLQDNDSDVDLEYDEDGNPIAPKKSKYIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGIT 156 (330)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~i~ 156 (330)
+.++...+...+.++...++++|++++.+ .++.++|+++++|+++.|.||+++||..|+.+..++..++..+|..++++
T Consensus 134 m~e~k~~~~~~e~~~~~leydsd~nPi~~-~kr~idpl~~idhs~i~y~p~~kdfy~e~esI~gl~~~d~~~~r~~Lnlr 212 (731)
T KOG0339|consen 134 MSENKRAGAAKECDDMCLEYDSDGNPIAP-DKRQIDPLPPIDHSEIDYEPFNKDFYEEHESIEGLTKMDVIDLRLTLNLR 212 (731)
T ss_pred hhhcccchhhhhcccceeecCCCCCccCc-ccccCCCCCCcchhhccccccccccccChhhhhccccccchhhHhhhcce
Confidence 99988776666677777899999999987 66789999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC
Q psy17644 157 VSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE 236 (330)
Q Consensus 157 ~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~ 236 (330)
+.|..+|+|+++|.+++|+..|+.++++..|++|||+|++++|..++|||++.+|.||||||.||++|++.|++.++.+.
T Consensus 213 v~g~s~~rpvtsfeh~gfDkqLm~airk~Ey~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~ 292 (731)
T KOG0339|consen 213 VSGSSPPRPVTSFEHFGFDKQLMTAIRKSEYEKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELK 292 (731)
T ss_pred eccCCCCCCcchhhhcCchHHHHHHHhhhhcccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCcc
Q psy17644 237 PGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVT 316 (330)
Q Consensus 237 ~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~ 316 (330)
.+++|..|||||||+||.||+.++++|++.+|++++++|||.+.++|.+.|+.++.||||||+||++++..+..+++++.
T Consensus 293 ~g~gPi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS 372 (731)
T KOG0339|consen 293 PGEGPIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVS 372 (731)
T ss_pred CCCCCeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeecccccCcCC
Q psy17644 317 FLVLDEADRMFDMG 330 (330)
Q Consensus 317 ~lVvDEad~lld~G 330 (330)
||||||||+|++||
T Consensus 373 ~LV~DEadrmfdmG 386 (731)
T KOG0339|consen 373 YLVLDEADRMFDMG 386 (731)
T ss_pred EEEEechhhhhccc
Confidence 99999999999998
No 2
>KOG0334|consensus
Probab=100.00 E-value=2.6e-45 Score=369.10 Aligned_cols=218 Identities=55% Similarity=0.859 Sum_probs=209.1
Q ss_pred CCCCCCCCccchhhhhhhcCCCChhhhccCHHHHHHHHHHcC-cEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCC
Q psy17644 113 PLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSG-ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPT 191 (330)
Q Consensus 113 ~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~-i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt 191 (330)
-+..++||++.|.||.++||.+..++..|+..++..+|...- |.+.|..+|.|+.+|.++|+...++..++++||.+||
T Consensus 310 ~~~~~~~S~~~~epFRknfy~e~~di~~ms~~eV~~yr~~l~~i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~y~k~~ 389 (997)
T KOG0334|consen 310 NLIQVDHSKISYEPFRKNFYIEVRDIKRMSAAEVDEYRCELDGIKVKGKECPKPVTSWTQCGLSSKILETLKKLGYEKPT 389 (997)
T ss_pred ceeecccccccchhhhhcccccchhHHHHHHHHHHHhhcCccceeeccCCCCcccchHhhCCchHHHHHHHHHhcCCCCc
Confidence 567899999999999999999999999999999999998884 9999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceE
Q psy17644 192 PIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSV 271 (330)
Q Consensus 192 ~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~ 271 (330)
|||.+|||++++|||+|++|.||||||++|+||++.|+..++....+.||.+|||+|||+||.||++++++|++.+++++
T Consensus 390 ~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ir~ 469 (997)
T KOG0334|consen 390 PIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLGIRV 469 (997)
T ss_pred chhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcCceE
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred EEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC---CCCCCCccEEEeecccccCcCC
Q psy17644 272 VCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG---ATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 272 ~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~---~~~l~~i~~lVvDEad~lld~G 330 (330)
+++|||....+++..+++++.|+||||+++++++-.+ ..++.++.+||+||||+|+|||
T Consensus 470 v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdmg 531 (997)
T KOG0334|consen 470 VCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDMG 531 (997)
T ss_pred EEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhheec
Confidence 9999999999999999999999999999999998654 3457788899999999999998
No 3
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=4.3e-42 Score=342.60 Aligned_cols=220 Identities=48% Similarity=0.783 Sum_probs=206.7
Q ss_pred CCCCCCCCCCccchhhhhhhcCCCChhhhccCHHHHHHHHHHcCcEe-eCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC
Q psy17644 111 IDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITV-SGADPPYPVSSFGHFGFDEVLMKALRKCEYTS 189 (330)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~i~~-~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~ 189 (330)
...++.++|+...+.||+++||.+++.+..++..++..+|...++.+ .|..+|.|+.+|.+++|++.|+++|.++||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~g~~~ 152 (545)
T PTZ00110 73 GKRLQPIDWKSINLVPFEKNFYKEHPEVSALSSKEVDEIRKEKEITIIAGENVPKPVVSFEYTSFPDYILKSLKNAGFTE 152 (545)
T ss_pred ccccCCCCCccccccchhhhcccCChhhhcCCHHHHHHHHHhcCcEEecCCCCCcccCCHhhcCCCHHHHHHHHHCCCCC
Confidence 34577889988889999999999999999999999999999999886 68999999999999999999999999999999
Q ss_pred CCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCc
Q psy17644 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNL 269 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~ 269 (330)
|||+|.++||.+++|+|+|++|+||||||++|+||++.+++.++......+|.+|||+|||+||.|++..+++|+...++
T Consensus 153 pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~~i 232 (545)
T PTZ00110 153 PTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASSKI 232 (545)
T ss_pred CCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcccCc
Confidence 99999999999999999999999999999999999999998765544556899999999999999999999999998899
Q ss_pred eEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 270 SVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 270 ~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
++.+++||.....+...+..+++|||+||++|.+++.++...++++++|||||||+|++||
T Consensus 233 ~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g 293 (545)
T PTZ00110 233 RNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG 293 (545)
T ss_pred cEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc
Confidence 9999999999988888899999999999999999999888889999999999999999987
No 4
>KOG0331|consensus
Probab=100.00 E-value=6.9e-42 Score=329.06 Aligned_cols=209 Identities=50% Similarity=0.851 Sum_probs=187.9
Q ss_pred cchhhhhhhcCCCChhhhccCHHHHHHHHHHcCcEeeCCC-CCCCCCCC-----------------------------CC
Q psy17644 122 IVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGAD-PPYPVSSF-----------------------------GH 171 (330)
Q Consensus 122 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~-~p~p~~~f-----------------------------~~ 171 (330)
..+.+|.++||.+++....+...+....+.+..+.+.+.. +|.|+.+| ..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ 95 (519)
T KOG0331|consen 16 LDLSPFDKNFYKEHPSVKKRGSAEVERKRKKNEITVKGGDSVPKPVKSFEESGFPAKVLEEIPKLSRSSGESDSSAAFQE 95 (519)
T ss_pred cccCcccccccccccccccccccccccccCcceeeccCCCCCCCCccchhcccCCccccccccccccccccCCcchhhhc
Confidence 3457788899988888777777777777777777777765 66665554 44
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHh-cCCCCCCCCCeEEEEcccH
Q psy17644 172 FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMD-QKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 172 ~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~-~~~~~~~~~~~vLil~Ptr 250 (330)
++|++.+..+++..||..|||||+++||+++.|||++++|.||||||++|+||++.|+.. +.......+|++|||+|||
T Consensus 96 ~~ls~~~~~~lk~~g~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTR 175 (519)
T KOG0331|consen 96 LGLSEELMKALKEQGFEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTR 175 (519)
T ss_pred ccccHHHHHHHHhcCCCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcH
Confidence 566777777788999999999999999999999999999999999999999999999998 5666677899999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 251 ELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 251 ~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
|||.|+...+..++....++++|+|||.....|...++++++|+||||+||+++++.+..+|++|.|||+||||+|||||
T Consensus 176 ELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG 255 (519)
T KOG0331|consen 176 ELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG 255 (519)
T ss_pred HHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
No 5
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.3e-39 Score=321.71 Aligned_cols=216 Identities=36% Similarity=0.573 Sum_probs=196.0
Q ss_pred CCCCCCccch-hhhhhhcCCCChhhh-ccCHHHHHHHHHHcCcEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCH
Q psy17644 115 PPIDHSTIVY-EEVEKNFYQPHEDIA-RLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP 192 (330)
Q Consensus 115 ~~~~~~~~~~-~~~~~~f~~~~~~~~-~~~~~~~~~~r~~~~i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~ 192 (330)
..++++...+ .+++++||..+.... +++..++..+|..++|.+.|..+|.|+.+|.+++|++.++++|.+.||..|||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g~~~ptp 146 (518)
T PLN00206 67 VAVGAPKPKRLPATDECFYVRDPGSTSGLSSSQAELLRRKLEIHVKGEAVPPPILSFSSCGLPPKLLLNLETAGYEFPTP 146 (518)
T ss_pred CCcCCCchhhcCCcCCcCCccCcchhccCCHHHHHHHHHHCCCEecCCCCCchhcCHHhCCCCHHHHHHHHHcCCCCCCH
Confidence 3445555554 678899999888765 49999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCC--CCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCce
Q psy17644 193 IQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL--EPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLS 270 (330)
Q Consensus 193 iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~--~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~ 270 (330)
+|.++||.+++|+|++++|+||||||++|++|++.+++..+.. ....+|++|||+|||+||.|++..++.+++..+++
T Consensus 147 iQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~~~~ 226 (518)
T PLN00206 147 IQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGLPFK 226 (518)
T ss_pred HHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCce
Confidence 9999999999999999999999999999999999998764321 12367999999999999999999999999988999
Q ss_pred EEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 271 VVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 271 ~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
+.+++||.....+...+..+++|||+||++|.+++.+....++++.+|||||||+|+++|
T Consensus 227 ~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~g 286 (518)
T PLN00206 227 TALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERG 286 (518)
T ss_pred EEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcc
Confidence 999999999888888888899999999999999999888889999999999999999987
No 6
>KOG0336|consensus
Probab=100.00 E-value=6.3e-40 Score=300.88 Aligned_cols=206 Identities=43% Similarity=0.721 Sum_probs=189.0
Q ss_pred hhhhhhhcCCCChhhhccCHHHHHHHHHHc-CcEee----C--CCCCCCCCCCCC-CCCCHHHHHHHHHCCCCCCCHHHH
Q psy17644 124 YEEVEKNFYQPHEDIARLTPQEAQELRAKS-GITVS----G--ADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPIQA 195 (330)
Q Consensus 124 ~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~-~i~~~----g--~~~p~p~~~f~~-~~l~~~l~~~l~~~~~~~pt~iQ~ 195 (330)
++|..+|||....+.+.|+..++..+|... +|.+. | ..+|+|+.+|++ |.-.+.+++++++.||.+|||||.
T Consensus 169 lpPi~knfYke~~e~s~ls~~q~~~~r~en~~it~dd~K~gekrpIPnP~ctFddAFq~~pevmenIkK~GFqKPtPIqS 248 (629)
T KOG0336|consen 169 LPPIKKNFYKESNETSNLSKEQLQEWRKENFNITCDDLKEGEKRPIPNPVCTFDDAFQCYPEVMENIKKTGFQKPTPIQS 248 (629)
T ss_pred CCchhhhhhhcCchhccCCHHHHHHHHHcCCcEEecccccCCcccCCCCcCcHHHHHhhhHHHHHHHHhccCCCCCcchh
Confidence 468999999999999999999999999877 45543 2 347899999987 678899999999999999999999
Q ss_pred HhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCC-CCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEE
Q psy17644 196 QAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL-EPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCC 274 (330)
Q Consensus 196 ~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~-~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~ 274 (330)
|+||++++|+|++++|+||+|||++||+|.+.|+..++.+ ...++|.+|+++|||+||.|+.-+++++. +.+.+.+|+
T Consensus 249 QaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys-yng~ksvc~ 327 (629)
T KOG0336|consen 249 QAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS-YNGLKSVCV 327 (629)
T ss_pred cccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh-hcCcceEEE
Confidence 9999999999999999999999999999999999887643 34578999999999999999999999885 458899999
Q ss_pred ECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 275 YGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 275 ~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
|||.+..+|+..++++.+||||||++|.++...+.++|.+|.|||+||||+|||||
T Consensus 328 ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMg 383 (629)
T KOG0336|consen 328 YGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMG 383 (629)
T ss_pred ecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999998
No 7
>KOG0338|consensus
Probab=100.00 E-value=7.6e-38 Score=293.75 Aligned_cols=162 Identities=38% Similarity=0.573 Sum_probs=152.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
.+|.+++|+..|++++..+||..|||||..+||..+-|+|+++||.||||||+||.||+|.+++..+.. ....+||||
T Consensus 181 ~sF~~mNLSRPlLka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~--~~~TRVLVL 258 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKK--VAATRVLVL 258 (691)
T ss_pred hhHHhcccchHHHHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCccc--CcceeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999999987654 346799999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC-CCCCCCccEEEeecccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG-ATKLNRVTFLVLDEADR 325 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~-~~~l~~i~~lVvDEad~ 325 (330)
||||+||.|++...++++..+.+.+++++||.+...|...|+.++||||||||||++++.+. .+++++|.+||+||||+
T Consensus 259 ~PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR 338 (691)
T KOG0338|consen 259 VPTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR 338 (691)
T ss_pred eccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH
Confidence 99999999999999999999999999999999999999999999999999999999999765 56799999999999999
Q ss_pred cCcCC
Q psy17644 326 MFDMG 330 (330)
Q Consensus 326 lld~G 330 (330)
||+-|
T Consensus 339 MLeeg 343 (691)
T KOG0338|consen 339 MLEEG 343 (691)
T ss_pred HHHHH
Confidence 99754
No 8
>KOG0333|consensus
Probab=100.00 E-value=5.4e-38 Score=295.68 Aligned_cols=194 Identities=44% Similarity=0.697 Sum_probs=184.9
Q ss_pred hhhccCHHHHHHHHHHcCcEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCCh
Q psy17644 137 DIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSG 216 (330)
Q Consensus 137 ~~~~~~~~~~~~~r~~~~i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsG 216 (330)
.+..|+...|..||..++|.++|..+|+|+++|++.+|+..++..+.+.||..|||||+++||.+++.+|+|++|.||||
T Consensus 215 ~l~Em~~rdwri~redynis~kg~~lpnplrnwEE~~~P~e~l~~I~~~~y~eptpIqR~aipl~lQ~rD~igvaETgsG 294 (673)
T KOG0333|consen 215 VLAEMTERDWRIFREDYNISIKGGRLPNPLRNWEESGFPLELLSVIKKPGYKEPTPIQRQAIPLGLQNRDPIGVAETGSG 294 (673)
T ss_pred hHHhcCCccceeeecceeeeecCCCCCccccChhhcCCCHHHHHHHHhcCCCCCchHHHhhccchhccCCeeeEEeccCC
Confidence 47778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcCCCC----CCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCe
Q psy17644 217 KTGAFIWPMLVHIMDQKELE----PGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAE 292 (330)
Q Consensus 217 KT~a~llp~l~~i~~~~~~~----~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~d 292 (330)
||++|++|+|..+...++.. .-.||+++||+|||+|++||..+..+|++.++++++.++||.+..++...++.+|+
T Consensus 295 ktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gce 374 (673)
T KOG0333|consen 295 KTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCE 374 (673)
T ss_pred ccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccce
Confidence 99999999999998876443 23589999999999999999999999999999999999999999999999999999
Q ss_pred EEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 293 IVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 293 IiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
|+||||++|++.+.+..+-++.+.+||+||||+|+|||
T Consensus 375 iviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmg 412 (673)
T KOG0333|consen 375 IVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMG 412 (673)
T ss_pred eeecCchHHHHHHHHHHHHhccCceEeccchhhhhccc
Confidence 99999999999999988889999999999999999998
No 9
>KOG0341|consensus
Probab=100.00 E-value=2.1e-38 Score=289.21 Aligned_cols=210 Identities=39% Similarity=0.691 Sum_probs=194.2
Q ss_pred ccchhhhhhhcCCCChhhhccCHHHHHHHHHHcCcEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhh
Q psy17644 121 TIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA 200 (330)
Q Consensus 121 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~ 200 (330)
.+.|+.--+..|.|+--+..|+.++....|++++|.+.|..+|+|+.+|.++.|+..+++.|++.|+..|||||.+.+|.
T Consensus 124 Gi~Y~ePi~T~WkPP~hir~mS~e~~e~vRk~~~I~veGd~ipPPIksF~eMKFP~~~L~~lk~KGI~~PTpIQvQGlPv 203 (610)
T KOG0341|consen 124 GITYEEPIKTAWKPPRHIRKMSEEQRELVRKQLHILVEGDDIPPPIKSFKEMKFPKPLLRGLKKKGIVHPTPIQVQGLPV 203 (610)
T ss_pred CCcccCcchhccCCcHHHHHhhHHHHHHHHHhheEEeeCCCCCCchhhhhhccCCHHHHHHHHhcCCCCCCceeecCcce
Confidence 34566666777888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcC---CCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC------CceE
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQK---ELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY------NLSV 271 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~---~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~------~~~~ 271 (330)
+++|||+|++|-||||||++|.||++...+.+. +...+.||..|||||+|+||.|++..+..++..+ .++.
T Consensus 204 vLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs 283 (610)
T KOG0341|consen 204 VLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRS 283 (610)
T ss_pred EeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhh
Confidence 999999999999999999999999999888763 3345689999999999999999999998886532 4688
Q ss_pred EEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 272 VCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 272 ~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
.+|.||.....|...++.|.+|+|+||+||.+++.++..+|.-++||++||||+|+|||
T Consensus 284 ~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmG 342 (610)
T KOG0341|consen 284 LLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMG 342 (610)
T ss_pred hhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhcc
Confidence 89999999999999999999999999999999999999999999999999999999998
No 10
>KOG0330|consensus
Probab=100.00 E-value=9.4e-37 Score=278.65 Aligned_cols=159 Identities=42% Similarity=0.687 Sum_probs=152.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
..+|.++++.+.|++++...++..||+||+++||.++.|+|+|+.|.||||||.+|+||++++++.++. .+.+||
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~~~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~-----~~~~lV 134 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELGWKKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPK-----LFFALV 134 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhCcCCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCC-----CceEEE
Confidence 567999999999999999999999999999999999999999999999999999999999999998754 499999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHH-cCCCCCCCccEEEeeccc
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVK-MGATKLNRVTFLVLDEAD 324 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~-~~~~~l~~i~~lVvDEad 324 (330)
|+||||||.||...+..++...|+++.++.||.+...|...+.+.+||||||||+|.+++. .+.+++..+++||+||||
T Consensus 135 LtPtRELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEAD 214 (476)
T KOG0330|consen 135 LTPTRELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEAD 214 (476)
T ss_pred ecCcHHHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHH
Confidence 9999999999999999999999999999999999999999999999999999999999998 567789999999999999
Q ss_pred ccCcC
Q psy17644 325 RMFDM 329 (330)
Q Consensus 325 ~lld~ 329 (330)
++|||
T Consensus 215 rlLd~ 219 (476)
T KOG0330|consen 215 RLLDM 219 (476)
T ss_pred hhhhh
Confidence 99987
No 11
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.6e-35 Score=293.12 Aligned_cols=161 Identities=48% Similarity=0.777 Sum_probs=149.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
..|.+++|++.+++++.+.||..|||||.++||.++.|+|++++|+||||||+||++|+|+++..... ...+.+|||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~---~~~~~aLil 105 (513)
T COG0513 29 PEFASLGLSPELLQALKDLGFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVE---RKYVSALIL 105 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccc---cCCCceEEE
Confidence 67999999999999999999999999999999999999999999999999999999999999764211 111129999
Q ss_pred cccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
+|||+||.|+++.+..++... ++++.+++||.+...+...++.+++||||||+||++++.++.++++.+++||+||||+
T Consensus 106 ~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADr 185 (513)
T COG0513 106 APTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADR 185 (513)
T ss_pred CCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhh
Confidence 999999999999999999998 7999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCC
Q psy17644 326 MFDMG 330 (330)
Q Consensus 326 lld~G 330 (330)
|||||
T Consensus 186 mLd~G 190 (513)
T COG0513 186 MLDMG 190 (513)
T ss_pred hhcCC
Confidence 99998
No 12
>KOG0335|consensus
Probab=100.00 E-value=4.1e-35 Score=278.16 Aligned_cols=176 Identities=43% Similarity=0.722 Sum_probs=164.6
Q ss_pred cEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCC
Q psy17644 155 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKE 234 (330)
Q Consensus 155 i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~ 234 (330)
+.+.|.+.|.++.+|.+..+.+.++.++...+|..|||+|+.+||.+..|+|+++||+||||||.|||+|++.+++..+.
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~ 141 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGP 141 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCc
Confidence 44678999999999999999999999999999999999999999999999999999999999999999999999998754
Q ss_pred CC---C--CCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCC
Q psy17644 235 LE---P--GDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA 309 (330)
Q Consensus 235 ~~---~--~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~ 309 (330)
.. . ...|.+|||+|||+||.|++++.++|.-..+++++..|||.+...+...+.++|+|+||||+||.++++.+.
T Consensus 142 ~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~ 221 (482)
T KOG0335|consen 142 EDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGK 221 (482)
T ss_pred ccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcce
Confidence 21 1 135999999999999999999999999888999999999999999999999999999999999999999999
Q ss_pred CCCCCccEEEeecccccCc-CC
Q psy17644 310 TKLNRVTFLVLDEADRMFD-MG 330 (330)
Q Consensus 310 ~~l~~i~~lVvDEad~lld-~G 330 (330)
+.|..++||||||||+|+| ||
T Consensus 222 i~l~~~k~~vLDEADrMlD~mg 243 (482)
T KOG0335|consen 222 ISLDNCKFLVLDEADRMLDEMG 243 (482)
T ss_pred eehhhCcEEEecchHHhhhhcc
Confidence 9999999999999999999 87
No 13
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=7.8e-34 Score=276.06 Aligned_cols=165 Identities=41% Similarity=0.634 Sum_probs=152.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC--CCCCCeE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE--PGDGPMG 243 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~--~~~~~~v 243 (330)
..+|.+++|++.+++++.+.||..|||+|.++||.+++|+|++++||||||||++|++|++++++..+... ..+++++
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 7 EQKFSDFALHPQVVEALEKKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 36799999999999999999999999999999999999999999999999999999999999998654321 1357899
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecc
Q psy17644 244 LILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEA 323 (330)
Q Consensus 244 Lil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEa 323 (330)
|||+|||+||.|+++.+..++...++++..++||.....+...+..+++||||||++|.+++.+....++++.+||||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 99999999999999999999999999999999999888888888888999999999999999988889999999999999
Q ss_pred cccCcCC
Q psy17644 324 DRMFDMG 330 (330)
Q Consensus 324 d~lld~G 330 (330)
|+|+++|
T Consensus 167 d~l~~~~ 173 (423)
T PRK04837 167 DRMFDLG 173 (423)
T ss_pred HHHhhcc
Confidence 9999987
No 14
>KOG0348|consensus
Probab=100.00 E-value=2.8e-34 Score=271.10 Aligned_cols=170 Identities=36% Similarity=0.667 Sum_probs=152.0
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHH-HCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCC-CCC
Q psy17644 161 DPPYPVSSFGHFGFDEVLMKALR-KCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL-EPG 238 (330)
Q Consensus 161 ~~p~p~~~f~~~~l~~~l~~~l~-~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~-~~~ 238 (330)
+.|..-..|..+||++.+...|. .+++..||.+|+++||.+++|||+++.++||||||++||+|+++++...... ...
T Consensus 130 e~~fts~~f~~LGL~~~lv~~L~~~m~i~~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs 209 (708)
T KOG0348|consen 130 EAPFTSAAFASLGLHPHLVSHLNTKMKISAPTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRS 209 (708)
T ss_pred ccccccccchhcCCCHHHHHHHHHHhccCccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCcccccc
Confidence 44555677999999999999995 4699999999999999999999999999999999999999999999876433 456
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC-CCCCCCcc
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG-ATKLNRVT 316 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~-~~~l~~i~ 316 (330)
.|+.+|||+||||||.|+|+.+.++.+.+ -+....+.||.........+++|+.|||+|||||.+.+.+. .+.+++++
T Consensus 210 ~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LR 289 (708)
T KOG0348|consen 210 DGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLR 289 (708)
T ss_pred CCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeee
Confidence 89999999999999999999999998764 34556788999988888999999999999999999998764 56799999
Q ss_pred EEEeecccccCcCC
Q psy17644 317 FLVLDEADRMFDMG 330 (330)
Q Consensus 317 ~lVvDEad~lld~G 330 (330)
+||+||||+|+|+|
T Consensus 290 wlVlDEaDrlleLG 303 (708)
T KOG0348|consen 290 WLVLDEADRLLELG 303 (708)
T ss_pred EEEecchhHHHhcc
Confidence 99999999999998
No 15
>KOG0345|consensus
Probab=100.00 E-value=3.4e-33 Score=260.51 Aligned_cols=164 Identities=39% Similarity=0.598 Sum_probs=143.5
Q ss_pred CCCCCCC--CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 167 SSFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 167 ~~f~~~~--l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
.+|+.++ |.+.|++++...||...||+|..+||.+++++|+++.|+||||||+||++|++..+..+..........+|
T Consensus 4 ~~~~~l~~~L~~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgal 83 (567)
T KOG0345|consen 4 KSFSSLAPPLSPWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGAL 83 (567)
T ss_pred cchhhcCCCccHHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEE
Confidence 3577765 55999999999999999999999999999999999999999999999999999998765433222235789
Q ss_pred EEcccHHHHHHHHHHHHHhccC-CCceEEEEECCCchHHHHHHHhC-CCeEEEEChHHHHHHHHcCCC--CCCCccEEEe
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKG-YNLSVVCCYGGGSKWDQSKALEL-GAEIVVGTPGRIIDMVKMGAT--KLNRVTFLVL 320 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~-~~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~~~--~l~~i~~lVv 320 (330)
||+||||||.||++.+..|... .++.+.+++||.+.....+.+++ ++.|+|||||||.+++.+... +++++++||+
T Consensus 84 IIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVL 163 (567)
T KOG0345|consen 84 IISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVL 163 (567)
T ss_pred EecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEe
Confidence 9999999999999999999877 68899999999998888777664 789999999999999988544 4569999999
Q ss_pred ecccccCcCC
Q psy17644 321 DEADRMFDMG 330 (330)
Q Consensus 321 DEad~lld~G 330 (330)
||||+|+|||
T Consensus 164 DEADrLldmg 173 (567)
T KOG0345|consen 164 DEADRLLDMG 173 (567)
T ss_pred cchHhHhccc
Confidence 9999999998
No 16
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1.5e-32 Score=269.31 Aligned_cols=163 Identities=42% Similarity=0.695 Sum_probs=149.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC-CCCCCeEEEE
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE-PGDGPMGLIL 246 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~-~~~~~~vLil 246 (330)
+|++++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|+++++....... ....+++|||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil 81 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALIL 81 (456)
T ss_pred CHHHcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEE
Confidence 689999999999999999999999999999999999999999999999999999999999987643221 1234689999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+|||+||.|+++.++.++...++++..++||.....+...+..+++||||||++|.+++.+....++++.+|||||||+|
T Consensus 82 ~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~l 161 (456)
T PRK10590 82 TPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRM 161 (456)
T ss_pred eCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHH
Confidence 99999999999999999999999999999999988888888888999999999999999888888999999999999999
Q ss_pred CcCC
Q psy17644 327 FDMG 330 (330)
Q Consensus 327 ld~G 330 (330)
+++|
T Consensus 162 l~~~ 165 (456)
T PRK10590 162 LDMG 165 (456)
T ss_pred hccc
Confidence 9986
No 17
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.9e-32 Score=274.46 Aligned_cols=164 Identities=41% Similarity=0.673 Sum_probs=149.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC--CCCCCeEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE--PGDGPMGL 244 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~--~~~~~~vL 244 (330)
.+|.+|+|++.|+++|.+.||..|||+|.++||.+++|+|++++|+||||||++|++|++++++...... ...++++|
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAGFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 4699999999999999999999999999999999999999999999999999999999999987643211 12368999
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC-CCCCCCccEEEeecc
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG-ATKLNRVTFLVLDEA 323 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~-~~~l~~i~~lVvDEa 323 (330)
||+|||+||.|+++.+.+|+...++++..++||.....+...+..+++|||+||++|.+++.+. ...++.+++||||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999999999999999999999999998888888888999999999999998765 467899999999999
Q ss_pred cccCcCC
Q psy17644 324 DRMFDMG 330 (330)
Q Consensus 324 d~lld~G 330 (330)
|+|+++|
T Consensus 169 h~lld~g 175 (572)
T PRK04537 169 DRMFDLG 175 (572)
T ss_pred HHHhhcc
Confidence 9999886
No 18
>KOG0343|consensus
Probab=100.00 E-value=2.5e-33 Score=265.55 Aligned_cols=164 Identities=35% Similarity=0.577 Sum_probs=150.1
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
.+..|.+|+|+...+++|+..+|..||.+|+++||..+.|+|+++.|.||||||+||++|+|.+++.. .+....|.-+|
T Consensus 67 ~~~kF~dlpls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~-kWs~~DGlGal 145 (758)
T KOG0343|consen 67 TIKKFADLPLSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRL-KWSPTDGLGAL 145 (758)
T ss_pred hhhhHHhCCCchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHc-CCCCCCCceeE
Confidence 45679999999999999999999999999999999999999999999999999999999999998764 46667889999
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC-CCCCCCccEEEeecc
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG-ATKLNRVTFLVLDEA 323 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~-~~~l~~i~~lVvDEa 323 (330)
||.|||+||.|++..+.+.+++..+++.++.||.........+. ++.|+|||||||+.++... .++.+++.+||+|||
T Consensus 146 IISPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~-~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEA 224 (758)
T KOG0343|consen 146 IISPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERIS-QMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEA 224 (758)
T ss_pred EecchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhh-cCCeEEechHHHHHHhhhcCCCCCCcceEEEeccH
Confidence 99999999999999999999999999999999999766555554 4899999999999988654 567899999999999
Q ss_pred cccCcCC
Q psy17644 324 DRMFDMG 330 (330)
Q Consensus 324 d~lld~G 330 (330)
|+|||||
T Consensus 225 DR~LDMG 231 (758)
T KOG0343|consen 225 DRMLDMG 231 (758)
T ss_pred HHHHHHh
Confidence 9999998
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=5.2e-32 Score=264.07 Aligned_cols=162 Identities=42% Similarity=0.692 Sum_probs=150.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
+|++++|++.++++|.+.||..||++|.++||.+++|+|++++||||+|||++|++|++++++.... ....++++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~-~~~~~~~~lil~ 80 (434)
T PRK11192 2 TFSELELDESLLEALQDKGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPR-RKSGPPRILILT 80 (434)
T ss_pred CHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccc-cCCCCceEEEEC
Confidence 5999999999999999999999999999999999999999999999999999999999999976422 122457999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 248 PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 248 Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
||++||.|+++.+..++...++++..++||.....+...+..+++||||||++|++++.+..+.+.++.+|||||||+|+
T Consensus 81 Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l 160 (434)
T PRK11192 81 PTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRML 160 (434)
T ss_pred CcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHh
Confidence 99999999999999999999999999999999888888888889999999999999999888889999999999999999
Q ss_pred cCC
Q psy17644 328 DMG 330 (330)
Q Consensus 328 d~G 330 (330)
+||
T Consensus 161 ~~~ 163 (434)
T PRK11192 161 DMG 163 (434)
T ss_pred CCC
Confidence 987
No 20
>KOG0342|consensus
Probab=100.00 E-value=1.2e-32 Score=258.30 Aligned_cols=164 Identities=35% Similarity=0.565 Sum_probs=150.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
...|.++.|++..++++..+||..+|++|..+||.++.|+|+++.|.||||||+||++|++.++++.+.. ..++-.|||
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~-~r~~~~vlI 159 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFK-PRNGTGVLI 159 (543)
T ss_pred hhHhhccccCHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccC-CCCCeeEEE
Confidence 4558889999999999999999999999999999999999999999999999999999999999987543 347889999
Q ss_pred EcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCC-CCCccEEEeecc
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATK-LNRVTFLVLDEA 323 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~-l~~i~~lVvDEa 323 (330)
|||||+||.|++.+++.+..+. +..+..+.||+........+.++|.|+|||||||.+++++...+ ++.++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 9999999999999999999887 88999999999988777888889999999999999999876554 567789999999
Q ss_pred cccCcCC
Q psy17644 324 DRMFDMG 330 (330)
Q Consensus 324 d~lld~G 330 (330)
|++||||
T Consensus 240 DrlLd~G 246 (543)
T KOG0342|consen 240 DRLLDIG 246 (543)
T ss_pred hhhhhcc
Confidence 9999998
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.98 E-value=6.2e-32 Score=265.40 Aligned_cols=159 Identities=44% Similarity=0.666 Sum_probs=147.8
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
.+|..++|++.++++|.+.||..|||+|.++||.+++|+|++++||||||||++|++|+++++.... .++++|||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~-----~~~~~lil 78 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELGYTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKR-----FRVQALVL 78 (460)
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhhhcc-----CCceEEEE
Confidence 5799999999999999999999999999999999999999999999999999999999999875422 35789999
Q ss_pred cccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
+|||+||.|+.+.++.++... ++++..++||.+...+...+..+++|+||||++|.+++.++...++++++|||||||+
T Consensus 79 ~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~ 158 (460)
T PRK11776 79 CPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADR 158 (460)
T ss_pred eCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHH
Confidence 999999999999999988754 7889999999999888888889999999999999999998888899999999999999
Q ss_pred cCcCC
Q psy17644 326 MFDMG 330 (330)
Q Consensus 326 lld~G 330 (330)
|++||
T Consensus 159 ~l~~g 163 (460)
T PRK11776 159 MLDMG 163 (460)
T ss_pred HhCcC
Confidence 99987
No 22
>KOG0347|consensus
Probab=99.98 E-value=2.2e-32 Score=259.06 Aligned_cols=167 Identities=34% Similarity=0.552 Sum_probs=149.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCC------C
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL------E 236 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~------~ 236 (330)
..++.|.+|+|+..++++|..+||..||+||..+||+++.| .|+++.|.||||||+||-+|++..+...... .
T Consensus 178 ~DvsAW~~l~lp~~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~ 257 (731)
T KOG0347|consen 178 VDVSAWKNLFLPMEILRALSNLGFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNT 257 (731)
T ss_pred cChHHHhcCCCCHHHHHHHHhcCCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhH
Confidence 34667999999999999999999999999999999999999 7999999999999999999999965543211 1
Q ss_pred CCCCC--eEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC---C
Q psy17644 237 PGDGP--MGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT---K 311 (330)
Q Consensus 237 ~~~~~--~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~---~ 311 (330)
...++ .+|||+|||+||.|+.+.+..++...++++..++||.....|.+.++..++|||||||||+.++..... +
T Consensus 258 ~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~ 337 (731)
T KOG0347|consen 258 SAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGN 337 (731)
T ss_pred HhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhh
Confidence 11234 599999999999999999999999999999999999999999999999999999999999999986644 5
Q ss_pred CCCccEEEeecccccCcCC
Q psy17644 312 LNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 312 l~~i~~lVvDEad~lld~G 330 (330)
++.+.+|||||||||++-|
T Consensus 338 ~k~vkcLVlDEaDRmvekg 356 (731)
T KOG0347|consen 338 FKKVKCLVLDEADRMVEKG 356 (731)
T ss_pred hhhceEEEEccHHHHhhhc
Confidence 8899999999999999866
No 23
>KOG0340|consensus
Probab=99.97 E-value=2.4e-32 Score=247.23 Aligned_cols=159 Identities=40% Similarity=0.597 Sum_probs=149.3
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
...|..+||++++.+.++.+|+.+|||+|..|||.++.|||+|++|.||||||++|.+|+|+.+.+.+ .|-.+||
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP-----~giFalv 80 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDP-----YGIFALV 80 (442)
T ss_pred cCchhhcCccHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCC-----CcceEEE
Confidence 46799999999999999999999999999999999999999999999999999999999999988764 5889999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCC----CCCCCccEEEee
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA----TKLNRVTFLVLD 321 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~----~~l~~i~~lVvD 321 (330)
++|||+||.|+.+.+..+++..++++.+++||.+.-.+...|..++||||+||+||.+++..+. ..+++++++|+|
T Consensus 81 lTPTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlD 160 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLD 160 (442)
T ss_pred ecchHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEec
Confidence 9999999999999999999999999999999999999999999999999999999999998652 238899999999
Q ss_pred cccccCcC
Q psy17644 322 EADRMFDM 329 (330)
Q Consensus 322 Ead~lld~ 329 (330)
|||+|++-
T Consensus 161 EADrvL~~ 168 (442)
T KOG0340|consen 161 EADRVLAG 168 (442)
T ss_pred chhhhhcc
Confidence 99999863
No 24
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.97 E-value=2e-31 Score=268.95 Aligned_cols=160 Identities=44% Similarity=0.726 Sum_probs=148.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
..+|.+++|++.++++|.++||..|||+|.++||.++.|+|+|++||||||||++|++|++..+... ..++++||
T Consensus 5 ~~~f~~l~L~~~ll~al~~~G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~-----~~~~~~LI 79 (629)
T PRK11634 5 ETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPE-----LKAPQILV 79 (629)
T ss_pred cCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhc-----cCCCeEEE
Confidence 3469999999999999999999999999999999999999999999999999999999999887543 24689999
Q ss_pred EcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccc
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEAD 324 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad 324 (330)
|+|||+||.|++..+..+.+.. ++.++.++||.....+...++.+++|||+||++|++++.+....++++.+|||||||
T Consensus 80 L~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd 159 (629)
T PRK11634 80 LAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEAD 159 (629)
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHH
Confidence 9999999999999999987765 789999999999888888888899999999999999999888889999999999999
Q ss_pred ccCcCC
Q psy17644 325 RMFDMG 330 (330)
Q Consensus 325 ~lld~G 330 (330)
.|++||
T Consensus 160 ~ml~~g 165 (629)
T PRK11634 160 EMLRMG 165 (629)
T ss_pred HHhhcc
Confidence 999987
No 25
>KOG0346|consensus
Probab=99.97 E-value=6.7e-32 Score=250.06 Aligned_cols=164 Identities=37% Similarity=0.616 Sum_probs=144.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCC-CCCCCCeEEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL-EPGDGPMGLI 245 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~-~~~~~~~vLi 245 (330)
.+|++|+|+++|++++.+.||.+||-||..+||.++.|+|+++.|.||||||+||++|+++.++..... ....+|.++|
T Consensus 19 ktFe~~gLD~RllkAi~~lG~ekpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~i 98 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLGWEKPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVI 98 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhCcCCcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEE
Confidence 579999999999999999999999999999999999999999999999999999999999999986544 4567899999
Q ss_pred EcccHHHHHHHHHHHHHhccCCC--ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCC-CCCCCccEEEeec
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYN--LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA-TKLNRVTFLVLDE 322 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~--~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~-~~l~~i~~lVvDE 322 (330)
|+|||+||.|++..+.++...++ ++++-+....+.......+...++|||+||++|..++..+. ..+..+.+||+||
T Consensus 99 LvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE 178 (569)
T KOG0346|consen 99 LVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE 178 (569)
T ss_pred EechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech
Confidence 99999999999999999877654 45555554455555557777789999999999999998876 6689999999999
Q ss_pred ccccCcCC
Q psy17644 323 ADRMFDMG 330 (330)
Q Consensus 323 ad~lld~G 330 (330)
||.||..|
T Consensus 179 ADLllsfG 186 (569)
T KOG0346|consen 179 ADLLLSFG 186 (569)
T ss_pred hhhhhhcc
Confidence 99999887
No 26
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.97 E-value=2.5e-30 Score=255.00 Aligned_cols=166 Identities=40% Similarity=0.564 Sum_probs=149.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC--CCCCCe
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE--PGDGPM 242 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~--~~~~~~ 242 (330)
....|..++|++.|+++|.+.||..||++|.++|+.+++|+|+|++++||||||++|++|++.+++..+... ....++
T Consensus 85 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~ 164 (475)
T PRK01297 85 GKTRFHDFNLAPELMHAIHDLGFPYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPR 164 (475)
T ss_pred CCCCHhHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCce
Confidence 356789999999999999999999999999999999999999999999999999999999999998754221 123689
Q ss_pred EEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh-CCCeEEEEChHHHHHHHHcCCCCCCCccEEEee
Q psy17644 243 GLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE-LGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLD 321 (330)
Q Consensus 243 vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvD 321 (330)
+|||+|||+||.|+++.++.+++..++.+..++||.....+...+. ..++|||+||++|..++.++...++++++||||
T Consensus 165 aLil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViD 244 (475)
T PRK01297 165 ALIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLD 244 (475)
T ss_pred EEEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEec
Confidence 9999999999999999999999988999999999988777766664 468999999999999999888889999999999
Q ss_pred cccccCcCC
Q psy17644 322 EADRMFDMG 330 (330)
Q Consensus 322 Ead~lld~G 330 (330)
|||+++++|
T Consensus 245 Eah~l~~~~ 253 (475)
T PRK01297 245 EADRMLDMG 253 (475)
T ss_pred hHHHHHhcc
Confidence 999999875
No 27
>KOG0337|consensus
Probab=99.97 E-value=1e-30 Score=241.17 Aligned_cols=161 Identities=39% Similarity=0.671 Sum_probs=151.9
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
..+|..+||+..++++|.+.||..|||||+.+||.++.|+|++..|.||||||.||++||+.++.... ..|.++||
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg~~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s----~~g~Rali 95 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKGFNTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS----QTGLRALI 95 (529)
T ss_pred CCCccccCCCHHHHHHHHHhhcCCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc----ccccceee
Confidence 46799999999999999999999999999999999999999999999999999999999999986542 35789999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
+.|||+|+.|+.+..+.+++.+++++.+++||....++...+..++|||+|||+++..+.-.-...|++|+|||+||||+
T Consensus 96 lsptreLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr 175 (529)
T KOG0337|consen 96 LSPTRELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR 175 (529)
T ss_pred ccCcHHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH
Confidence 99999999999999999999999999999999999999999998999999999999988766668899999999999999
Q ss_pred cCcCC
Q psy17644 326 MFDMG 330 (330)
Q Consensus 326 lld~G 330 (330)
|++||
T Consensus 176 lfemg 180 (529)
T KOG0337|consen 176 LFEMG 180 (529)
T ss_pred HHhhh
Confidence 99997
No 28
>PTZ00424 helicase 45; Provisional
Probab=99.96 E-value=4.1e-29 Score=241.06 Aligned_cols=160 Identities=35% Similarity=0.586 Sum_probs=146.6
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
+.+|..++|++.+.+++.+.||..|+|+|.++|+.+++|+|++++||||||||++|++|++.++... .+++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~-----~~~~~~li 101 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYGFEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLIDYD-----LNACQALI 101 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhcCC-----CCCceEEE
Confidence 5779999999999999999999999999999999999999999999999999999999999887432 24688999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
|+||++||.|+...+..++...+..+..++||.....+...+..+++|+|+||++|..++.++...++++++|||||||+
T Consensus 102 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~ 181 (401)
T PTZ00424 102 LAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADE 181 (401)
T ss_pred ECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHH
Confidence 99999999999999999988888888889999888777778888899999999999999988888899999999999999
Q ss_pred cCcCC
Q psy17644 326 MFDMG 330 (330)
Q Consensus 326 lld~G 330 (330)
++++|
T Consensus 182 ~~~~~ 186 (401)
T PTZ00424 182 MLSRG 186 (401)
T ss_pred HHhcc
Confidence 98764
No 29
>KOG0328|consensus
Probab=99.96 E-value=2.6e-30 Score=227.91 Aligned_cols=165 Identities=35% Similarity=0.598 Sum_probs=152.8
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q psy17644 161 DPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDG 240 (330)
Q Consensus 161 ~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~ 240 (330)
.-..++.+|+++||+..+++++...||.+|+.+|+.|||.++.|||+|++|++|+|||.+|.+.+|+.+--. ...
T Consensus 21 ~~~~v~~~F~~Mgl~edlLrgiY~yGfekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~d~~-----~r~ 95 (400)
T KOG0328|consen 21 EKVKVIPTFDDMGLKEDLLRGIYAYGFEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSLDIS-----VRE 95 (400)
T ss_pred cCcccccchhhcCchHHHHHHHHHhccCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeecccc-----cce
Confidence 345578899999999999999999999999999999999999999999999999999999999888765332 235
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 241 PMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 241 ~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
.++|||+|||+||.|+.+.+..++..+++.+..|.||.+..+.++.+..|++++.+||+++++|++++....+.+++||+
T Consensus 96 tQ~lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVL 175 (400)
T KOG0328|consen 96 TQALILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVL 175 (400)
T ss_pred eeEEEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEe
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccccCcCC
Q psy17644 321 DEADRMFDMG 330 (330)
Q Consensus 321 DEad~lld~G 330 (330)
||||.||+-|
T Consensus 176 DEaDemL~kg 185 (400)
T KOG0328|consen 176 DEADEMLNKG 185 (400)
T ss_pred ccHHHHHHhh
Confidence 9999999755
No 30
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.96 E-value=6e-28 Score=211.57 Aligned_cols=159 Identities=50% Similarity=0.819 Sum_probs=145.2
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q psy17644 169 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP 248 (330)
Q Consensus 169 f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P 248 (330)
|+++++++.+.+.+.+.|+..|+++|.++++.+++|++++++++||+|||++|++|++.++...+ ..+++++||++|
T Consensus 1 ~~~~~~~~~i~~~l~~~~~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~---~~~~~~viii~p 77 (203)
T cd00268 1 FEELGLSPELLRGIYALGFEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSP---KKDGPQALILAP 77 (203)
T ss_pred CCcCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhc---ccCCceEEEEcC
Confidence 78899999999999999999999999999999999999999999999999999999999988753 125799999999
Q ss_pred cHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 249 TRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 249 tr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
|++|+.|+...++.+....++.+..++|+.........+..+++|+|+||.+|..++.+....+.++.++|+||||.+.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 99999999999999988888899999999988777777777899999999999999988888889999999999999876
Q ss_pred CC
Q psy17644 329 MG 330 (330)
Q Consensus 329 ~G 330 (330)
+|
T Consensus 158 ~~ 159 (203)
T cd00268 158 MG 159 (203)
T ss_pred cC
Confidence 53
No 31
>KOG0326|consensus
Probab=99.96 E-value=3.6e-30 Score=230.33 Aligned_cols=157 Identities=36% Similarity=0.610 Sum_probs=148.7
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
..|+++.|++.|+..+...||.+|+|+|.++||+++.|||+++.|..|+|||.||++|+|..+-.. .+.-+++|+
T Consensus 85 ~efEd~~Lkr~LLmgIfe~G~ekPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~-----~~~IQ~~il 159 (459)
T KOG0326|consen 85 NEFEDYCLKRELLMGIFEKGFEKPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPK-----KNVIQAIIL 159 (459)
T ss_pred ccHHHhhhhHHHHHHHHHhccCCCCCccccccceeecchhhhhhccCCCCCccceechhhhhcCcc-----ccceeEEEE
Confidence 459999999999999999999999999999999999999999999999999999999999987543 356789999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+|||+||.|+.+.++.+++.+++++....||.+.+..+..+....+++|+||+|+++++.++...++.+.++|+||||.|
T Consensus 160 VPtrelALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl 239 (459)
T KOG0326|consen 160 VPTRELALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL 239 (459)
T ss_pred eecchhhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh
Confidence 99999999999999999999999999999999999888888889999999999999999999999999999999999999
Q ss_pred Cc
Q psy17644 327 FD 328 (330)
Q Consensus 327 ld 328 (330)
|+
T Consensus 240 Ls 241 (459)
T KOG0326|consen 240 LS 241 (459)
T ss_pred hc
Confidence 85
No 32
>KOG0350|consensus
Probab=99.95 E-value=3.6e-28 Score=228.37 Aligned_cols=149 Identities=34% Similarity=0.536 Sum_probs=129.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHhhhhhc---------CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 176 EVLMKALRKCEYTSPTPIQAQAVPAAL---------SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 176 ~~l~~~l~~~~~~~pt~iQ~~~i~~~~---------~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
..+.+++.++++....|+|.+++|.++ .++|+++.||||||||++|.||+++.+..++. +.-++|||
T Consensus 146 a~~~q~l~k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v----~~LRavVi 221 (620)
T KOG0350|consen 146 ATIDQLLVKMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPV----KRLRAVVI 221 (620)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCc----cceEEEEE
Confidence 345566899999999999999999985 47899999999999999999999998876532 34799999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCC-----CeEEEEChHHHHHHHH-cCCCCCCCccEEEe
Q psy17644 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELG-----AEIVVGTPGRIIDMVK-MGATKLNRVTFLVL 320 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~-----~dIiV~TP~~L~~~l~-~~~~~l~~i~~lVv 320 (330)
+|||+|+.|++..+.+++...|+.++.+.|-++.....+.|... .||||+|||||.++++ .+.++|++++||||
T Consensus 222 vPtr~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVI 301 (620)
T KOG0350|consen 222 VPTRELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVI 301 (620)
T ss_pred eeHHHHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEe
Confidence 99999999999999999999999988888877777666666552 4999999999999998 46778999999999
Q ss_pred ecccccCc
Q psy17644 321 DEADRMFD 328 (330)
Q Consensus 321 DEad~lld 328 (330)
||||||++
T Consensus 302 DEADRll~ 309 (620)
T KOG0350|consen 302 DEADRLLD 309 (620)
T ss_pred chHHHHHH
Confidence 99999985
No 33
>KOG0329|consensus
Probab=99.94 E-value=1.8e-27 Score=207.45 Aligned_cols=166 Identities=33% Similarity=0.527 Sum_probs=149.8
Q ss_pred eCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCC
Q psy17644 158 SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEP 237 (330)
Q Consensus 158 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~ 237 (330)
+|+.+....+.|.+|-|+++|++++..+||..|+.+|..+||..+-|.|++.+|.+|.|||++|+|..|+.+---
T Consensus 33 kgsyv~ihssgfrdfllkpellraivdcgfehpsevqhecipqailgmdvlcqaksgmgktavfvl~tlqqiepv----- 107 (387)
T KOG0329|consen 33 KGSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPV----- 107 (387)
T ss_pred cCcEEEEeccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchhheecccCCCceeeeehhhhhhcCCC-----
Confidence 444455556779999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCcc
Q psy17644 238 GDGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVT 316 (330)
Q Consensus 238 ~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~ 316 (330)
.....+|++|.||+||.||.++..+|++++ ++++.+.|||.+.......+++.++|+|+||+|++.+.+++.+++++++
T Consensus 108 ~g~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vk 187 (387)
T KOG0329|consen 108 DGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVK 187 (387)
T ss_pred CCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcc
Confidence 124678999999999999999999999987 5788899999999988899999999999999999999999999999999
Q ss_pred EEEeecccccCc
Q psy17644 317 FLVLDEADRMFD 328 (330)
Q Consensus 317 ~lVvDEad~lld 328 (330)
.+|+||||.||+
T Consensus 188 hFvlDEcdkmle 199 (387)
T KOG0329|consen 188 HFVLDECDKMLE 199 (387)
T ss_pred eeehhhHHHHHH
Confidence 999999999985
No 34
>KOG0344|consensus
Probab=99.94 E-value=4.5e-27 Score=225.28 Aligned_cols=184 Identities=35% Similarity=0.572 Sum_probs=154.8
Q ss_pred HHHHHHHHcCcEeeCCCCCCCCCCCCC----CCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 145 EAQELRAKSGITVSGADPPYPVSSFGH----FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 145 ~~~~~r~~~~i~~~g~~~p~p~~~f~~----~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
.....|..+++.+.|..+|+|+.+|.. +.+...+++++...+|..|||+|++++|.++.+++++.|||||||||++
T Consensus 110 ~~~~~Rk~~k~~v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtla 189 (593)
T KOG0344|consen 110 KLLGIRKSNKINVDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLA 189 (593)
T ss_pred ccccchhcceeeccCCCCCCccccccccchhhhhcHHHHHhHhhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhh
Confidence 355678888999999999999999997 6789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc--cCCCceEEEEECCCc-hHHHHHHHhCCCeEEEEC
Q psy17644 221 FIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG--KGYNLSVVCCYGGGS-KWDQSKALELGAEIVVGT 297 (330)
Q Consensus 221 ~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~--~~~~~~~~~~~gg~~-~~~~~~~l~~~~dIiV~T 297 (330)
|++|++.++..........|-+++||.|||+||.|++.++.++. ...+.+++....... ...+.......++|+|+|
T Consensus 190 f~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~T 269 (593)
T KOG0344|consen 190 FNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILIST 269 (593)
T ss_pred hhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcC
Confidence 99999999987653334568899999999999999999999998 555555544433222 222222233358999999
Q ss_pred hHHHHHHHHcCC--CCCCCccEEEeecccccCc
Q psy17644 298 PGRIIDMVKMGA--TKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 298 P~~L~~~l~~~~--~~l~~i~~lVvDEad~lld 328 (330)
|.++..++.... +.++.|.++|+||||++++
T Consensus 270 P~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe 302 (593)
T KOG0344|consen 270 PMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFE 302 (593)
T ss_pred HHHHHHHhcCCCccchhheeeeEeechHHhhhC
Confidence 999999998776 5799999999999999986
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.94 E-value=1e-25 Score=231.54 Aligned_cols=148 Identities=22% Similarity=0.255 Sum_probs=125.9
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q psy17644 173 GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252 (330)
Q Consensus 173 ~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L 252 (330)
.|++.|.++|.+.||.+||++|.++||.+++|+|+++++|||||||+||++|+|+.+... .++++|||+|||+|
T Consensus 20 ~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~~~------~~~~aL~l~PtraL 93 (742)
T TIGR03817 20 WAHPDVVAALEAAGIHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALADD------PRATALYLAPTKAL 93 (742)
T ss_pred cCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHhhC------CCcEEEEEcChHHH
Confidence 388999999999999999999999999999999999999999999999999999998753 36899999999999
Q ss_pred HHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHc----CCCCCCCccEEEeecccccCc
Q psy17644 253 SQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM----GATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 253 a~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~----~~~~l~~i~~lVvDEad~lld 328 (330)
|.|++..++.++ ..++++..+.|+.. ..+...++.+++|||+||++|...+-. +...++++++|||||||.|.+
T Consensus 94 a~q~~~~l~~l~-~~~i~v~~~~Gdt~-~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g 171 (742)
T TIGR03817 94 AADQLRAVRELT-LRGVRPATYDGDTP-TEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG 171 (742)
T ss_pred HHHHHHHHHHhc-cCCeEEEEEeCCCC-HHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC
Confidence 999999999997 44677665555554 455666777899999999999753321 122378999999999999865
No 36
>KOG4284|consensus
Probab=99.93 E-value=6.9e-27 Score=225.15 Aligned_cols=165 Identities=30% Similarity=0.453 Sum_probs=149.1
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCC
Q psy17644 160 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGD 239 (330)
Q Consensus 160 ~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~ 239 (330)
...|.-...|+++-|...++..|+..+|..||++|..|||+++.+.|+|++|..|+|||++|.+.++..+... ..
T Consensus 18 DV~~~~~~~fe~l~l~r~vl~glrrn~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~-----~~ 92 (980)
T KOG4284|consen 18 DVQSNCTPGFEQLALWREVLLGLRRNAFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSR-----SS 92 (980)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhcccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcc-----cC
Confidence 3445566779999999999999999999999999999999999999999999999999999998888776432 25
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccC-CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEE
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKG-YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFL 318 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~-~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~l 318 (330)
.+.++||+|||++|.||...+.++|.. .|++|.+..||.........++. |+|+|+||||+..+++.+..+.++|+++
T Consensus 93 ~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-~rIvIGtPGRi~qL~el~~~n~s~vrlf 171 (980)
T KOG4284|consen 93 HIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-TRIVIGTPGRIAQLVELGAMNMSHVRLF 171 (980)
T ss_pred cceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh-ceEEecCchHHHHHHHhcCCCccceeEE
Confidence 789999999999999999999999975 58999999999998887777776 7999999999999999999999999999
Q ss_pred EeecccccCcCC
Q psy17644 319 VLDEADRMFDMG 330 (330)
Q Consensus 319 VvDEad~lld~G 330 (330)
||||||.|++-|
T Consensus 172 VLDEADkL~~t~ 183 (980)
T KOG4284|consen 172 VLDEADKLMDTE 183 (980)
T ss_pred EeccHHhhhchh
Confidence 999999999743
No 37
>PRK02362 ski2-like helicase; Provisional
Probab=99.93 E-value=4.9e-25 Score=227.74 Aligned_cols=150 Identities=25% Similarity=0.329 Sum_probs=131.1
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhh-hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~-~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
.|++++|++.+++++.+.|+.+|+|+|.++++. ++.|+|++++||||||||++|.+|+++++. ++.++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~--------~~~kal~i 73 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEGIEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA--------RGGKALYI 73 (737)
T ss_pred ChhhcCCCHHHHHHHHhCCCCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh--------cCCcEEEE
Confidence 478899999999999999999999999999998 779999999999999999999999999884 36789999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+|||+||.|++..++++.. .++++..+.|+...... . ...++||||||+++..+++++...++++++|||||||.|
T Consensus 74 ~P~raLa~q~~~~~~~~~~-~g~~v~~~tGd~~~~~~--~-l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l 149 (737)
T PRK02362 74 VPLRALASEKFEEFERFEE-LGVRVGISTGDYDSRDE--W-LGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLI 149 (737)
T ss_pred eChHHHHHHHHHHHHHhhc-CCCEEEEEeCCcCcccc--c-cCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECcccc
Confidence 9999999999999998754 47888888887654331 2 234799999999999999876666889999999999999
Q ss_pred CcC
Q psy17644 327 FDM 329 (330)
Q Consensus 327 ld~ 329 (330)
.+.
T Consensus 150 ~d~ 152 (737)
T PRK02362 150 DSA 152 (737)
T ss_pred CCC
Confidence 863
No 38
>KOG0327|consensus
Probab=99.93 E-value=6e-26 Score=208.06 Aligned_cols=160 Identities=37% Similarity=0.624 Sum_probs=144.0
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
+.+|++++|++.|++.+...||.+|+.||+.||..+..|+|+++.+++|+|||.+|++++++++-.. .....||+
T Consensus 25 vdsfddm~L~e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~-----~ke~qali 99 (397)
T KOG0327|consen 25 VDSFDDMNLKESLLRGIYAYGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDMS-----VKETQALI 99 (397)
T ss_pred hhhhhhcCCCHHHHhHHHhhccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCcc-----hHHHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999987322 13578999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH-HHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccc
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ-SKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEAD 324 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~-~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad 324 (330)
++|||+||.|+......++...+.++..+.||...... ....+..++|+|+||+++.++++...+....++++|+||||
T Consensus 100 laPtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaD 179 (397)
T KOG0327|consen 100 LAPTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEAD 179 (397)
T ss_pred hcchHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchH
Confidence 99999999999999999999999999999998887633 34445568999999999999999888888899999999999
Q ss_pred ccCcCC
Q psy17644 325 RMFDMG 330 (330)
Q Consensus 325 ~lld~G 330 (330)
.|+..|
T Consensus 180 EmLs~g 185 (397)
T KOG0327|consen 180 EMLSRG 185 (397)
T ss_pred hhhccc
Confidence 999766
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=99.92 E-value=1.5e-24 Score=223.55 Aligned_cols=151 Identities=22% Similarity=0.312 Sum_probs=132.5
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhh-hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~-~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
.|.++++++.+.+.+.+.|+..|+|+|.++++. +++|+|+++++|||||||++|.+|++.+++. .+.++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~-------~~~~~l~l 74 (720)
T PRK00254 2 KVDELRVDERIKRVLKERGIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLR-------EGGKAVYL 74 (720)
T ss_pred cHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHh-------cCCeEEEE
Confidence 477889999999999999999999999999986 7899999999999999999999999998875 36799999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+||++||.|++..++.+. ..++++..+.|+...... . ...++|||+||+++..++++....++++++|||||+|.|
T Consensus 75 ~P~~aLa~q~~~~~~~~~-~~g~~v~~~~Gd~~~~~~--~-~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l 150 (720)
T PRK00254 75 VPLKALAEEKYREFKDWE-KLGLRVAMTTGDYDSTDE--W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLI 150 (720)
T ss_pred eChHHHHHHHHHHHHHHh-hcCCEEEEEeCCCCCchh--h-hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCcc
Confidence 999999999999999874 458888888887764322 2 245899999999999999876667899999999999999
Q ss_pred CcC
Q psy17644 327 FDM 329 (330)
Q Consensus 327 ld~ 329 (330)
.++
T Consensus 151 ~~~ 153 (720)
T PRK00254 151 GSY 153 (720)
T ss_pred CCc
Confidence 865
No 40
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.92 E-value=4.9e-24 Score=180.82 Aligned_cols=133 Identities=36% Similarity=0.581 Sum_probs=117.0
Q ss_pred CHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCce
Q psy17644 191 TPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLS 270 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~ 270 (330)
||+|.++++.+.+|+++++.||||+|||++|++++++++... ...++||++|+++|+.|++..+..++...+.+
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~------~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~ 74 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG------KDARVLIIVPTRALAEQQFERLRKFFSNTNVR 74 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT------SSSEEEEEESSHHHHHHHHHHHHHHTTTTTSS
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC------CCceEEEEeecccccccccccccccccccccc
Confidence 799999999999999999999999999999999999988764 13599999999999999999999999888889
Q ss_pred EEEEECCCchH-HHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 271 VVCCYGGGSKW-DQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 271 ~~~~~gg~~~~-~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
+..++|+.... .....+..+++|+|+||.+|..++..+..++.++.+|||||+|.+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~ 134 (169)
T PF00270_consen 75 VVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE 134 (169)
T ss_dssp EEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT
T ss_pred cccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc
Confidence 99999988755 444555667999999999999999886667778999999999998764
No 41
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=2e-24 Score=219.40 Aligned_cols=148 Identities=17% Similarity=0.240 Sum_probs=132.5
Q ss_pred CCCCCCHHHHHHHH-----HCCCCCC---CHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCC
Q psy17644 170 GHFGFDEVLMKALR-----KCEYTSP---TPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGP 241 (330)
Q Consensus 170 ~~~~l~~~l~~~l~-----~~~~~~p---t~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~ 241 (330)
+.|++.+.+.+++. .+||..| ||+|.+++|.++.++++++.++||+|||++|++|++.+++.. .
T Consensus 65 eafal~re~~~r~lg~~~~~~G~~~p~~~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g--------~ 136 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSGYHQQWDMVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTG--------K 136 (970)
T ss_pred HHhCCCHHHHHHHhccccccccccCCCCCChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhc--------C
Confidence 46788888888876 6789988 999999999999999999999999999999999999888742 2
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcCCCCCC-------
Q psy17644 242 MGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMGATKLN------- 313 (330)
Q Consensus 242 ~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~~~l~------- 313 (330)
.++||+|||+||.|+++.+..+++.+++++.+++||.+...+...+ +|||+||||++| +++++.+...++
T Consensus 137 ~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~~i~GG~~~~eq~~~y--~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr 214 (970)
T PRK12899 137 PVHLVTVNDYLAQRDCEWVGSVLRWLGLTTGVLVSGSPLEKRKEIY--QCDVVYGTASEFGFDYLRDNSIATRKEEQVGR 214 (970)
T ss_pred CeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEEeCCCCHHHHHHHc--CCCEEEECCChhHHHHhhCCCCCcCHHHhhcc
Confidence 4899999999999999999999999999999999999988877665 589999999999 999998766655
Q ss_pred CccEEEeecccccC
Q psy17644 314 RVTFLVLDEADRMF 327 (330)
Q Consensus 314 ~i~~lVvDEad~ll 327 (330)
.+.++||||||.||
T Consensus 215 ~~~~~IIDEADsmL 228 (970)
T PRK12899 215 GFYFAIIDEVDSIL 228 (970)
T ss_pred cccEEEEechhhhh
Confidence 45899999999998
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=3.9e-24 Score=223.76 Aligned_cols=155 Identities=21% Similarity=0.334 Sum_probs=127.1
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCC-CCCCCCeEEEEcccHHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL-EPGDGPMGLILAPTREL 252 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~-~~~~~~~vLil~Ptr~L 252 (330)
|++.+.+.+.+ +|..|||+|.++||.+++|+|++++||||||||++|++|++.+++..... ...+++++|||+|||+|
T Consensus 18 l~~~v~~~~~~-~~~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraL 96 (876)
T PRK13767 18 LRPYVREWFKE-KFGTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRAL 96 (876)
T ss_pred cCHHHHHHHHH-ccCCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHH
Confidence 56666666555 78999999999999999999999999999999999999999998864321 11357899999999999
Q ss_pred HHHHHHHHHH-------hc----cCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC--CCCCccEE
Q psy17644 253 SQQIYNEAKR-------FG----KGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT--KLNRVTFL 318 (330)
Q Consensus 253 a~Qi~~~~~~-------l~----~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--~l~~i~~l 318 (330)
|.|++..+.. ++ ... ++++...+|+.......+.+++.++|+||||++|..++.+... .++++++|
T Consensus 97 a~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~V 176 (876)
T PRK13767 97 NNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWV 176 (876)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEE
Confidence 9999886542 22 233 6677888898888777777888899999999999988865433 47899999
Q ss_pred EeecccccCcC
Q psy17644 319 VLDEADRMFDM 329 (330)
Q Consensus 319 VvDEad~lld~ 329 (330)
||||||.|++.
T Consensus 177 VIDE~H~l~~~ 187 (876)
T PRK13767 177 IVDEIHSLAEN 187 (876)
T ss_pred EEechhhhccC
Confidence 99999999853
No 43
>PRK01172 ski2-like helicase; Provisional
Probab=99.90 E-value=4.3e-23 Score=211.60 Aligned_cols=149 Identities=18% Similarity=0.261 Sum_probs=129.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
.|++++|++.+++.+.+.+|. ++++|.++++.+.+|++++++||||||||+++.++++.++.. +.++|||+
T Consensus 2 ~~~~~~l~~~~~~~~~~~~~~-l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~--------~~k~v~i~ 72 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGNDFE-LYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLA--------GLKSIYIV 72 (674)
T ss_pred cHhhcCCCHHHHHHHhhCCCC-CCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHh--------CCcEEEEe
Confidence 477889999999999998886 999999999999999999999999999999999999988753 56899999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 248 PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 248 Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
|||+||.|+++.++++. ..+.++...+|+...... ....++|+|+||+++..++.++...++++.+|||||||++.
T Consensus 73 P~raLa~q~~~~~~~l~-~~g~~v~~~~G~~~~~~~---~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~ 148 (674)
T PRK01172 73 PLRSLAMEKYEELSRLR-SLGMRVKISIGDYDDPPD---FIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIG 148 (674)
T ss_pred chHHHHHHHHHHHHHHh-hcCCeEEEEeCCCCCChh---hhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhcc
Confidence 99999999999999874 457888888887654321 22357999999999999998877778999999999999997
Q ss_pred cC
Q psy17644 328 DM 329 (330)
Q Consensus 328 d~ 329 (330)
+.
T Consensus 149 d~ 150 (674)
T PRK01172 149 DE 150 (674)
T ss_pred CC
Confidence 63
No 44
>KOG0332|consensus
Probab=99.90 E-value=4.8e-24 Score=194.62 Aligned_cols=162 Identities=32% Similarity=0.530 Sum_probs=140.3
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcC--CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC
Q psy17644 159 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALS--GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE 236 (330)
Q Consensus 159 g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~--g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~ 236 (330)
+..+...+++|++|+|+++|++++..++|.+|+.||..++|.++. .+++|.++++|+|||.||.|.||.++--.
T Consensus 82 pnsPlyS~ksFeeL~LkPellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~---- 157 (477)
T KOG0332|consen 82 PNSPLYSAKSFEELRLKPELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPD---- 157 (477)
T ss_pred CCCCccccccHHhhCCCHHHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCcc----
Confidence 455667899999999999999999999999999999999999995 48999999999999999999999886432
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHc-CCCCCCCc
Q psy17644 237 PGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM-GATKLNRV 315 (330)
Q Consensus 237 ~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~-~~~~l~~i 315 (330)
...|.++.|+|||+||.|+.+.+.+.++..++...+.+-|... .+.-.-..+|+|+||+.+.+++.+ +.+.+..+
T Consensus 158 -~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ita~yair~sk~---~rG~~i~eqIviGTPGtv~Dlm~klk~id~~ki 233 (477)
T KOG0332|consen 158 -VVVPQCICLAPTRELAPQTGEVVEEMGKFTELTASYAIRGSKA---KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKI 233 (477)
T ss_pred -ccCCCceeeCchHHHHHHHHHHHHHhcCceeeeEEEEecCccc---ccCCcchhheeeCCCccHHHHHHHHHhhChhhc
Confidence 2368999999999999999999999999988888877776621 111112368999999999999987 88899999
Q ss_pred cEEEeecccccCc
Q psy17644 316 TFLVLDEADRMFD 328 (330)
Q Consensus 316 ~~lVvDEad~lld 328 (330)
+++|+||||.|++
T Consensus 234 kvfVlDEAD~Mi~ 246 (477)
T KOG0332|consen 234 KVFVLDEADVMID 246 (477)
T ss_pred eEEEecchhhhhh
Confidence 9999999999985
No 45
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.89 E-value=3.2e-23 Score=210.16 Aligned_cols=154 Identities=23% Similarity=0.364 Sum_probs=138.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELS 253 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La 253 (330)
|++.+.+.++.. |..|||.|.++||.+.+|++++++||||||||.|.+||+++.+++........+-.+|||+|.|+|.
T Consensus 8 l~~~v~~~~~~~-~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn 86 (814)
T COG1201 8 LDPRVREWFKRK-FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALN 86 (814)
T ss_pred cCHHHHHHHHHh-cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHH
Confidence 678888988887 9999999999999999999999999999999999999999999987433344678999999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC--CCCCccEEEeecccccCc
Q psy17644 254 QQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT--KLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 254 ~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--~l~~i~~lVvDEad~lld 328 (330)
..+...+..++..+|+.+...+|..+..+..+..++.+||+|+||+.|.-++..... .|++++++||||+|.|.+
T Consensus 87 ~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~ 163 (814)
T COG1201 87 NDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAE 163 (814)
T ss_pred HHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhc
Confidence 999999999999999999888888888887888888999999999999998875433 489999999999999863
No 46
>PRK09401 reverse gyrase; Reviewed
Probab=99.89 E-value=1.5e-22 Score=215.30 Aligned_cols=138 Identities=24% Similarity=0.295 Sum_probs=113.1
Q ss_pred HHHHC-CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 181 ALRKC-EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 181 ~l~~~-~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
.+.+. |+ .||++|+.++|.++.|+|++++||||||||+ |+++++.++.. +++++|||+|||+||.|++..
T Consensus 72 ~f~~~~G~-~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~-------~g~~alIL~PTreLa~Qi~~~ 142 (1176)
T PRK09401 72 FFKKKTGS-KPWSLQRTWAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK-------KGKKSYIIFPTRLLVEQVVEK 142 (1176)
T ss_pred HHHHhcCC-CCcHHHHHHHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeccHHHHHHHHHH
Confidence 34444 55 8999999999999999999999999999995 66666655432 478999999999999999999
Q ss_pred HHHhccCCCceEEEEECCCc-----hHHHHHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 260 AKRFGKGYNLSVVCCYGGGS-----KWDQSKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 260 ~~~l~~~~~~~~~~~~gg~~-----~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
+++++...++.+..++||.. ...+...+.. .++|+||||++|.+++. .....++++|||||||+|+++
T Consensus 143 l~~l~~~~~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~ 216 (1176)
T PRK09401 143 LEKFGEKVGCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKS 216 (1176)
T ss_pred HHHHhhhcCceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhc
Confidence 99999988888888877764 2333344443 58999999999999886 345667999999999999974
No 47
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=2.6e-22 Score=197.67 Aligned_cols=131 Identities=23% Similarity=0.299 Sum_probs=105.9
Q ss_pred HCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 184 KCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 184 ~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. ++.+|||+|||+|+.|++..+..+
T Consensus 6 ~~g~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~-----------~~~~lVi~P~~~L~~dq~~~l~~~ 74 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALCS-----------DGITLVISPLISLMEDQVLQLKAS 74 (470)
T ss_pred hcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc-----------CCcEEEEecHHHHHHHHHHHHHHc
Confidence 459999999999999999999999999999999999999999842 467999999999999999988765
Q ss_pred ccCCCceEEEEECCCchHHHHH---HHh-CCCeEEEEChHHHHHH---HHcCCCCCCCccEEEeecccccCcCC
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSK---ALE-LGAEIVVGTPGRIIDM---VKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~---~l~-~~~dIiV~TP~~L~~~---l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
++.+..+.++.....+.. .+. ...+||++||+++... +.. ...+.++.+|||||||++++||
T Consensus 75 ----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~-l~~~~~i~~iViDEaH~i~~~g 143 (470)
T TIGR00614 75 ----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQT-LEERKGITLIAVDEAHCISQWG 143 (470)
T ss_pred ----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHH-HHhcCCcCEEEEeCCcccCccc
Confidence 566777777666543322 222 3479999999997542 211 1146789999999999999998
No 48
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.88 E-value=4.5e-22 Score=206.07 Aligned_cols=148 Identities=21% Similarity=0.287 Sum_probs=116.2
Q ss_pred CCCC--CCCCHHHHHHHHH-CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 168 SFGH--FGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 168 ~f~~--~~l~~~l~~~l~~-~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
.|.. |.....+...+++ .||..++|+|.++|++++.|+|+++++|||+|||+||+||+|.. ++.+|
T Consensus 436 ~W~~~~fpw~~~L~~~lk~~FG~~sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~-----------~GiTL 504 (1195)
T PLN03137 436 KWSSRNFPWTKKLEVNNKKVFGNHSFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALIC-----------PGITL 504 (1195)
T ss_pred cccccCCCchHHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc-----------CCcEE
Confidence 3553 4555566666554 58999999999999999999999999999999999999999853 46799
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh------CCCeEEEEChHHHHH---HHHc--CCCCCC
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE------LGAEIVVGTPGRIID---MVKM--GATKLN 313 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~------~~~dIiV~TP~~L~~---~l~~--~~~~l~ 313 (330)
||+|+++|+.+++..+... ++....+.++.....+...+. ..++||++||++|.. ++.. ......
T Consensus 505 VISPLiSLmqDQV~~L~~~----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~ 580 (1195)
T PLN03137 505 VISPLVSLIQDQIMNLLQA----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRG 580 (1195)
T ss_pred EEeCHHHHHHHHHHHHHhC----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhcc
Confidence 9999999998766666553 688888999888766654443 357999999999863 2221 111235
Q ss_pred CccEEEeecccccCcCC
Q psy17644 314 RVTFLVLDEADRMFDMG 330 (330)
Q Consensus 314 ~i~~lVvDEad~lld~G 330 (330)
.+.+|||||||+|++||
T Consensus 581 ~LslIVIDEAHcVSqWG 597 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWG 597 (1195)
T ss_pred ccceeccCcchhhhhcc
Confidence 68999999999999998
No 49
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.88 E-value=7.6e-22 Score=210.20 Aligned_cols=142 Identities=19% Similarity=0.233 Sum_probs=114.8
Q ss_pred HHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH
Q psy17644 176 EVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQ 255 (330)
Q Consensus 176 ~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Q 255 (330)
..+.+.+.+.....||++|+.++|.++.|+|++++||||||||+ |.+|++.++.. .++++|||+|||+||.|
T Consensus 65 ~~f~~~f~~~~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~-------~g~~vLIL~PTreLa~Q 136 (1171)
T TIGR01054 65 KEFEEFFKKAVGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK-------KGKRCYIILPTTLLVIQ 136 (1171)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEeCHHHHHHH
Confidence 34555566656668999999999999999999999999999996 77777766543 37899999999999999
Q ss_pred HHHHHHHhccCCCceEE---EEECCCchHHHH---HHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 256 IYNEAKRFGKGYNLSVV---CCYGGGSKWDQS---KALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 256 i~~~~~~l~~~~~~~~~---~~~gg~~~~~~~---~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
+++.+++++...++.+. +++||.+...+. ..+.+ +++|||+||++|...+.+-. . +++++||||||+|++
T Consensus 137 i~~~l~~l~~~~~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 137 VAEKISSLAEKAGVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--P-KFDFIFVDDVDALLK 213 (1171)
T ss_pred HHHHHHHHHHhcCCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--C-CCCEEEEeChHhhhh
Confidence 99999999987776544 456887765542 33444 48999999999998876521 2 899999999999998
No 50
>PRK14701 reverse gyrase; Provisional
Probab=99.87 E-value=8.1e-22 Score=214.15 Aligned_cols=143 Identities=20% Similarity=0.228 Sum_probs=115.5
Q ss_pred HHHHHHHH-CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH
Q psy17644 177 VLMKALRK-CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQ 255 (330)
Q Consensus 177 ~l~~~l~~-~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Q 255 (330)
.+.+.+.+ .|| .||++|+.++|.+++|+|++++||||||||++++++++.+.. .++++|||+|||+|+.|
T Consensus 67 ~~~~~f~~~~G~-~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~~--------~g~~aLVl~PTreLa~Q 137 (1638)
T PRK14701 67 EFEEFFEKITGF-EFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLAL--------KGKKCYIILPTTLLVKQ 137 (1638)
T ss_pred HHHHHHHHhhCC-CCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHHh--------cCCeEEEEECHHHHHHH
Confidence 34455555 788 699999999999999999999999999999966666654421 46799999999999999
Q ss_pred HHHHHHHhccCC--CceEEEEECCCchHHHH---HHHhCC-CeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 256 IYNEAKRFGKGY--NLSVVCCYGGGSKWDQS---KALELG-AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 256 i~~~~~~l~~~~--~~~~~~~~gg~~~~~~~---~~l~~~-~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
++..++.++... ++++..++||.+..++. ..+..+ ++|||+||++|...+... . ..++.+|||||||+|++|
T Consensus 138 i~~~l~~l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~ 215 (1638)
T PRK14701 138 TVEKIESFCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKA 215 (1638)
T ss_pred HHHHHHHHHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceecccc
Confidence 999999998765 45667788888876653 334444 899999999998876542 1 267999999999999986
Q ss_pred C
Q psy17644 330 G 330 (330)
Q Consensus 330 G 330 (330)
|
T Consensus 216 ~ 216 (1638)
T PRK14701 216 S 216 (1638)
T ss_pred c
Confidence 5
No 51
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.86 E-value=2.6e-21 Score=197.27 Aligned_cols=133 Identities=23% Similarity=0.261 Sum_probs=107.7
Q ss_pred CCCCCCCHHHHHhhhhhcCCC-cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE-EcccHHHHHHHHHHHHH
Q psy17644 185 CEYTSPTPIQAQAVPAALSGR-DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI-LAPTRELSQQIYNEAKR 262 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~-d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi-l~Ptr~La~Qi~~~~~~ 262 (330)
.||. |||||.++||.++.|+ ++++++|||||||.+|.++++.. .. ....|+.|| ++|||+||.|+++.+.+
T Consensus 12 ~G~~-PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~-----~~~~~~rLv~~vPtReLa~Qi~~~~~~ 84 (844)
T TIGR02621 12 HGYS-PFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EI-----GAKVPRRLVYVVNRRTVVDQVTEEAEK 84 (844)
T ss_pred hCCC-CCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cc-----cccccceEEEeCchHHHHHHHHHHHHH
Confidence 4787 9999999999999998 57777999999999776555522 11 123566666 66999999999999999
Q ss_pred hccCC-----------------------CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC---------
Q psy17644 263 FGKGY-----------------------NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT--------- 310 (330)
Q Consensus 263 l~~~~-----------------------~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--------- 310 (330)
+++.+ ++++.+++||.....+...+..+++|||||+ +++.++.+
T Consensus 85 ~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~----D~i~sr~L~~gYg~~~~ 160 (844)
T TIGR02621 85 IGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTV----DMIGSRLLFSGYGCGFK 160 (844)
T ss_pred HHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECH----HHHcCCccccccccccc
Confidence 98755 4888999999999999999999999999995 55544443
Q ss_pred -------CCCCccEEEeecccccCcCC
Q psy17644 311 -------KLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 311 -------~l~~i~~lVvDEad~lld~G 330 (330)
.++++++||||||| ++||
T Consensus 161 ~~pi~ag~L~~v~~LVLDEAD--Ld~g 185 (844)
T TIGR02621 161 SRPLHAGFLGQDALIVHDEAH--LEPA 185 (844)
T ss_pred cccchhhhhccceEEEEehhh--hccc
Confidence 27889999999999 6665
No 52
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.85 E-value=8.8e-21 Score=191.95 Aligned_cols=131 Identities=22% Similarity=0.277 Sum_probs=105.7
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.+ +..+|||+||++|+.|++..++.+
T Consensus 21 fG~~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~~-----------~g~tlVisPl~sL~~dqv~~l~~~- 88 (607)
T PRK11057 21 FGYQQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL-----------DGLTLVVSPLISLMKDQVDQLLAN- 88 (607)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc-----------CCCEEEEecHHHHHHHHHHHHHHc-
Confidence 59999999999999999999999999999999999999999853 357899999999999999998875
Q ss_pred cCCCceEEEEECCCchHHHHHH---Hh-CCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKA---LE-LGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
++.+.++.++......... +. ...+|+++||++|............++.+|||||||+|++||
T Consensus 89 ---gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G 155 (607)
T PRK11057 89 ---GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWG 155 (607)
T ss_pred ---CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccccc
Confidence 5666777776665543322 22 247899999999874221112334578999999999999998
No 53
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.85 E-value=8.9e-21 Score=191.80 Aligned_cols=131 Identities=18% Similarity=0.268 Sum_probs=108.0
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.||..++|+|.++|+.+++|+|+++++|||+|||++|++|++.+ +..+|||+|+++|+.|++..++.+
T Consensus 9 fg~~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~-----------~g~~lVisPl~sL~~dq~~~l~~~- 76 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPALLL-----------KGLTVVISPLISLMKDQVDQLRAA- 76 (591)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc-----------CCcEEEEcCCHHHHHHHHHHHHHc-
Confidence 69999999999999999999999999999999999999999843 356899999999999999988876
Q ss_pred cCCCceEEEEECCCchHHHHHH----HhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKA----LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~----l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
++.+..+.++......... .....+|+++||++|............++.+|||||||++.+||
T Consensus 77 ---gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g 143 (591)
T TIGR01389 77 ---GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWG 143 (591)
T ss_pred ---CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCccccccc
Confidence 5677777777765544322 23457999999999965333233446789999999999999998
No 54
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.84 E-value=2.1e-20 Score=191.31 Aligned_cols=138 Identities=25% Similarity=0.299 Sum_probs=114.5
Q ss_pred HHHHHHHHHCCCCCCCHHHHHhhhhhcCC------CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 176 EVLMKALRKCEYTSPTPIQAQAVPAALSG------RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 176 ~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g------~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
..+.+.+.+.-...||++|.++++.+.++ ++++++|+||||||++|++|++..+. ++.+++||+||
T Consensus 248 ~~~~~~~~~~l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~--------~g~q~lilaPT 319 (681)
T PRK10917 248 GELLKKFLASLPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE--------AGYQAALMAPT 319 (681)
T ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH--------cCCeEEEEecc
Confidence 45555554443347999999999999876 48999999999999999999998763 47899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCCchHHH---HHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 250 RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ---SKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 250 r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
++||.|++..+++++...++++.+++|+...... ...+.. .++||||||+.+.. ...++++.+|||||+|+
T Consensus 320 ~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hr 394 (681)
T PRK10917 320 EILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHR 394 (681)
T ss_pred HHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhh
Confidence 9999999999999999889999999999885433 344444 49999999988753 34578999999999998
Q ss_pred c
Q psy17644 326 M 326 (330)
Q Consensus 326 l 326 (330)
+
T Consensus 395 f 395 (681)
T PRK10917 395 F 395 (681)
T ss_pred h
Confidence 6
No 55
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.83 E-value=5.3e-20 Score=187.05 Aligned_cols=135 Identities=25% Similarity=0.310 Sum_probs=112.8
Q ss_pred HHHHHHHCCCCCCCHHHHHhhhhhcCC------CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 178 LMKALRKCEYTSPTPIQAQAVPAALSG------RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 178 l~~~l~~~~~~~pt~iQ~~~i~~~~~g------~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
+.+.+...+| .||++|..+|+.++++ .+.+++|+||||||++|++|++..+. ++.+++||+||++
T Consensus 225 ~~~~~~~lpf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~--------~g~qvlilaPT~~ 295 (630)
T TIGR00643 225 LTKFLASLPF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE--------AGYQVALMAPTEI 295 (630)
T ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH--------cCCcEEEECCHHH
Confidence 4445566677 7999999999999865 36899999999999999999998764 4789999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCCchHHH---HHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 252 LSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ---SKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 252 La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
||.|+++.+++++...++++.+++|+...... ...+.. .++|||+||+.+.. ...+.++.+|||||+|++
T Consensus 296 LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~f 369 (630)
T TIGR00643 296 LAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRF 369 (630)
T ss_pred HHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhc
Confidence 99999999999998889999999999876543 333433 47999999998753 345789999999999985
No 56
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.83 E-value=7e-20 Score=190.99 Aligned_cols=140 Identities=22% Similarity=0.266 Sum_probs=113.9
Q ss_pred CCCHHHHHHHHH-CCCCCCCHHHHHhhhhhcCC------CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 173 GFDEVLMKALRK-CEYTSPTPIQAQAVPAALSG------RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 173 ~l~~~l~~~l~~-~~~~~pt~iQ~~~i~~~~~g------~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
..+..+...+.+ .+| .|||+|.++|+.++++ +|++++|+||||||.+|++|++..+.. +++++|
T Consensus 435 ~~~~~~~~~~~~~~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~--------g~qvlv 505 (926)
T TIGR00580 435 PPDLEWQQEFEDSFPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD--------GKQVAV 505 (926)
T ss_pred CCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh--------CCeEEE
Confidence 344556666655 466 5999999999999875 799999999999999999999987643 689999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH---HHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEee
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ---SKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLD 321 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvD 321 (330)
|+||++||.|++..+++++...++++..+.|+.....+ ...+.. .++||||||.. + .+...++++.+||||
T Consensus 506 LvPT~~LA~Q~~~~f~~~~~~~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVID 580 (926)
T TIGR00580 506 LVPTTLLAQQHFETFKERFANFPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIID 580 (926)
T ss_pred EeCcHHHHHHHHHHHHHHhccCCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEee
Confidence 99999999999999999888888898888887765443 333444 48999999942 2 244568999999999
Q ss_pred ccccc
Q psy17644 322 EADRM 326 (330)
Q Consensus 322 Ead~l 326 (330)
|+|++
T Consensus 581 Eahrf 585 (926)
T TIGR00580 581 EEQRF 585 (926)
T ss_pred ccccc
Confidence 99986
No 57
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.83 E-value=5.4e-20 Score=190.60 Aligned_cols=146 Identities=23% Similarity=0.323 Sum_probs=122.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELS 253 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La 253 (330)
....+..++.+.|...++++|.+|+..+.+|||+|++.+||||||.+|++|++.+++..+. .++|+|.||++||
T Consensus 55 ~~~~l~~~l~~~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~------a~AL~lYPtnALa 128 (851)
T COG1205 55 RDESLKSALVKAGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS------ARALLLYPTNALA 128 (851)
T ss_pred hhhHHHHHHHHhccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC------ccEEEEechhhhH
Confidence 3445678888899999999999999999999999999999999999999999999998643 3889999999999
Q ss_pred HHHHHHHHHhccCCC--ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC----CCCCccEEEeecccc
Q psy17644 254 QQIYNEAKRFGKGYN--LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT----KLNRVTFLVLDEADR 325 (330)
Q Consensus 254 ~Qi~~~~~~l~~~~~--~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~----~l~~i~~lVvDEad~ 325 (330)
+.+.+.++++....+ +.+....|..........+.+.++||++||.+|..++-+... .+++++||||||+|-
T Consensus 129 ~DQ~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHt 206 (851)
T COG1205 129 NDQAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHT 206 (851)
T ss_pred hhHHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEeccee
Confidence 999999999988877 454444454444444466778899999999999996654332 378899999999994
No 58
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.81 E-value=4.9e-19 Score=188.33 Aligned_cols=136 Identities=24% Similarity=0.272 Sum_probs=111.5
Q ss_pred HHHHH-HHHCCCCCCCHHHHHhhhhhcCC------CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 177 VLMKA-LRKCEYTSPTPIQAQAVPAALSG------RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 177 ~l~~~-l~~~~~~~pt~iQ~~~i~~~~~g------~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
..... .....| .||++|.++|+.++++ +|++++|+||+|||.+|+.+++..+. ++++||||+||
T Consensus 588 ~~~~~~~~~~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~--------~g~qvlvLvPT 658 (1147)
T PRK10689 588 EQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE--------NHKQVAVLVPT 658 (1147)
T ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH--------cCCeEEEEeCc
Confidence 34444 455566 7999999999999987 89999999999999999988876643 47899999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh----CCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 250 RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE----LGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 250 r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
++||.|++..+++++...++++.++.|+.+..++...+. ..++||||||..|. ....++++.+|||||+|+
T Consensus 659 ~eLA~Q~~~~f~~~~~~~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahr 733 (1147)
T PRK10689 659 TLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHR 733 (1147)
T ss_pred HHHHHHHHHHHHHhhccCCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhh
Confidence 999999999999887777888888888888766654432 35899999996432 345678999999999999
Q ss_pred c
Q psy17644 326 M 326 (330)
Q Consensus 326 l 326 (330)
+
T Consensus 734 f 734 (1147)
T PRK10689 734 F 734 (1147)
T ss_pred c
Confidence 7
No 59
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.80 E-value=3.9e-19 Score=178.88 Aligned_cols=129 Identities=22% Similarity=0.240 Sum_probs=111.9
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
...|+++|..+.+.+..|+ |+.++||+|||++|++|++...+. |..|+||+||+.||.|.++.+.++.+.
T Consensus 54 g~~p~~vQlig~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~VvTpt~~LA~qdae~~~~l~~~ 123 (745)
T TIGR00963 54 GMRPFDVQLIGGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT--------GKGVHVVTVNDYLAQRDAEWMGQVYRF 123 (745)
T ss_pred CCCccchHHhhhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh--------CCCEEEEcCCHHHHHHHHHHHHHHhcc
Confidence 3579999999999988887 899999999999999999755553 456999999999999999999999999
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC------CCCCCCccEEEeecccccC
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG------ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~------~~~l~~i~~lVvDEad~ll 327 (330)
+|+++.+++||.+...+...+ .++|++|||++| +++++.+ ...++.+.++||||||+|+
T Consensus 124 LGLsv~~i~g~~~~~~r~~~y--~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~L 189 (745)
T TIGR00963 124 LGLSVGLILSGMSPEERREAY--ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSIL 189 (745)
T ss_pred CCCeEEEEeCCCCHHHHHHhc--CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHh
Confidence 999999999998876544444 479999999999 9988765 2357899999999999987
No 60
>KOG0349|consensus
Probab=99.79 E-value=7.6e-20 Score=169.97 Aligned_cols=90 Identities=39% Similarity=0.618 Sum_probs=81.0
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccCC---CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccE
Q psy17644 241 PMGLILAPTRELSQQIYNEAKRFGKGY---NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTF 317 (330)
Q Consensus 241 ~~vLil~Ptr~La~Qi~~~~~~l~~~~---~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~ 317 (330)
|.+||+-|+|+|+.|+++.+++|-.++ .++..++.||.-.+.|.+.++.+.+|+|+||+||.+++.++...++.+++
T Consensus 287 p~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crF 366 (725)
T KOG0349|consen 287 PEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRF 366 (725)
T ss_pred cceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEE
Confidence 899999999999999999888775443 34666889999999999999999999999999999999999999999999
Q ss_pred EEeecccccCcCC
Q psy17644 318 LVLDEADRMFDMG 330 (330)
Q Consensus 318 lVvDEad~lld~G 330 (330)
||+||||.+|-.|
T Consensus 367 lvlDead~lL~qg 379 (725)
T KOG0349|consen 367 LVLDEADLLLGQG 379 (725)
T ss_pred EEecchhhhhhcc
Confidence 9999999998654
No 61
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=1.2e-18 Score=177.62 Aligned_cols=130 Identities=18% Similarity=0.256 Sum_probs=111.2
Q ss_pred CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
|. .|+++|..+++++..|+ |+.++||+|||++|++|++...+ .|+.|+||+||+.||.|.+..+..+..
T Consensus 76 g~-~p~~vQl~~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al--------~G~~v~VvTpt~~LA~qd~e~~~~l~~ 144 (790)
T PRK09200 76 GM-RPYDVQLIGALVLHEGN--IAEMQTGEGKTLTATMPLYLNAL--------EGKGVHLITVNDYLAKRDAEEMGQVYE 144 (790)
T ss_pred CC-CCchHHHHhHHHHcCCc--eeeecCCCcchHHHHHHHHHHHH--------cCCCeEEEeCCHHHHHHHHHHHHHHHh
Confidence 44 79999999999999887 99999999999999999997766 378999999999999999999999999
Q ss_pred CCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcCC------CCCCCccEEEeecccccC
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMGA------TKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~------~~l~~i~~lVvDEad~ll 327 (330)
.+|+++.++.||.....+.+.. .+++|++|||++| .+++.... ..++.+.++||||||+||
T Consensus 145 ~lGl~v~~i~g~~~~~~~r~~~-y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiL 212 (790)
T PRK09200 145 FLGLTVGLNFSDIDDASEKKAI-YEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSIL 212 (790)
T ss_pred hcCCeEEEEeCCCCcHHHHHHh-cCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccce
Confidence 9999999999998833333333 4589999999999 66665432 246889999999999997
No 62
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=1.3e-18 Score=174.11 Aligned_cols=129 Identities=22% Similarity=0.242 Sum_probs=109.6
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
...|+++|..++|.++.|+ |+.++||+|||++|++|++.+.+ .|+.|+||+||++||.|.+..+..++..
T Consensus 101 g~~p~~VQ~~~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al--------~G~~v~VvTptreLA~qdae~~~~l~~~ 170 (656)
T PRK12898 101 GQRHFDVQLMGGLALLSGR--LAEMQTGEGKTLTATLPAGTAAL--------AGLPVHVITVNDYLAERDAELMRPLYEA 170 (656)
T ss_pred CCCCChHHHHHHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhh--------cCCeEEEEcCcHHHHHHHHHHHHHHHhh
Confidence 3579999999999999999 99999999999999999998865 3789999999999999999999999999
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcCC-------------------------CCCCCccEEEe
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMGA-------------------------TKLNRVTFLVL 320 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~-------------------------~~l~~i~~lVv 320 (330)
+++++.+++||.+.. .+....++||+++|...| .++++.+. .-...+.+.||
T Consensus 171 lGlsv~~i~gg~~~~--~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 171 LGLTVGCVVEDQSPD--ERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred cCCEEEEEeCCCCHH--HHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 999999999998653 344456799999999887 55554321 11356889999
Q ss_pred ecccccC
Q psy17644 321 DEADRMF 327 (330)
Q Consensus 321 DEad~ll 327 (330)
||+|.||
T Consensus 249 DEvDSiL 255 (656)
T PRK12898 249 DEADSVL 255 (656)
T ss_pred eccccee
Confidence 9999987
No 63
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.78 E-value=1.8e-18 Score=177.21 Aligned_cols=145 Identities=23% Similarity=0.328 Sum_probs=121.0
Q ss_pred CCCHHHHHHHHHCCCCCCCHHHHHhhhh-hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 173 GFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 173 ~l~~~l~~~l~~~~~~~pt~iQ~~~i~~-~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
.+...+...+...++..+.+-|+.++.. ++.++|+++|+|||||||+.+++.+++.+.+. +.++|+|||+|+
T Consensus 15 ~~~~~v~~i~~~~~~~el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~-------~~k~vYivPlkA 87 (766)
T COG1204 15 KLDDRVLEILKGDGIDELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG-------GGKVVYIVPLKA 87 (766)
T ss_pred cccHHHHHHhccCChHHhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc-------CCcEEEEeChHH
Confidence 4667777777777886666666666655 45679999999999999999999999998873 678999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 252 LSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 252 La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
||.+++.++++| ..+|+++....|...... ..+ .+++|||+||++|..++++....+..|++|||||+|.+.|
T Consensus 88 La~Ek~~~~~~~-~~~GirV~~~TgD~~~~~--~~l-~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d 160 (766)
T COG1204 88 LAEEKYEEFSRL-EELGIRVGISTGDYDLDD--ERL-ARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGD 160 (766)
T ss_pred HHHHHHHHhhhH-HhcCCEEEEecCCcccch--hhh-ccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCC
Confidence 999999999954 456999999999877443 122 3479999999999999998877788999999999999875
No 64
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.77 E-value=3.8e-18 Score=172.64 Aligned_cols=129 Identities=19% Similarity=0.198 Sum_probs=100.4
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.|+++|...+..+.. ..|+.++||+|||++|++|++.+.+. ++.|+||+||++||.|+++++..+.+.+|
T Consensus 70 rpydVQlig~l~l~~--G~Iaem~TGeGKTLta~Lpa~l~aL~--------g~~V~VVTpn~yLA~Rdae~m~~l~~~LG 139 (762)
T TIGR03714 70 FPYDVQVLGAIVLHQ--GNIAEMKTGEGKTLTATMPLYLNALT--------GKGAMLVTTNDYLAKRDAEEMGPVYEWLG 139 (762)
T ss_pred CccHHHHHHHHHhcC--CceeEecCCcchHHHHHHHHHHHhhc--------CCceEEeCCCHHHHHHHHHHHHHHHhhcC
Confidence 455555554444444 47999999999999999999877654 56799999999999999999999999999
Q ss_pred ceEEEEECCCc---hHHHHHHHhCCCeEEEEChHHH-HHHHHc------CCCCCCCccEEEeecccccC
Q psy17644 269 LSVVCCYGGGS---KWDQSKALELGAEIVVGTPGRI-IDMVKM------GATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 269 ~~~~~~~gg~~---~~~~~~~l~~~~dIiV~TP~~L-~~~l~~------~~~~l~~i~~lVvDEad~ll 327 (330)
+++.+++++.. .....+....+|+|++|||++| .+++.. ....++.+.++||||||.||
T Consensus 140 Lsv~~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsIL 208 (762)
T TIGR03714 140 LTVSLGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVL 208 (762)
T ss_pred CcEEEEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHh
Confidence 99998887632 1222333445799999999999 565532 23347889999999999997
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.76 E-value=9.1e-18 Score=166.57 Aligned_cols=125 Identities=20% Similarity=0.137 Sum_probs=98.1
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
...|+++|.++++.++.+++.+++++||+|||+++++. ...++.. ...++|||+||++|+.|+.+.+++++..
T Consensus 112 ~~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l-~~~~~~~------~~~~vLilvpt~eL~~Q~~~~l~~~~~~ 184 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLL-SRYYLEN------YEGKVLIIVPTTSLVTQMIDDFVDYRLF 184 (501)
T ss_pred cCCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHH-HHHHHhc------CCCeEEEEECcHHHHHHHHHHHHHhccc
Confidence 45799999999999999999999999999999876542 2222332 2348999999999999999999998755
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
....+..+++|.... .+.+|+|+||++|..... ..+.++.+|||||||++..
T Consensus 185 ~~~~~~~i~~g~~~~-------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~ 236 (501)
T PHA02558 185 PREAMHKIYSGTAKD-------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTG 236 (501)
T ss_pred cccceeEEecCcccC-------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccc
Confidence 445566677776543 347999999999876442 2467899999999999863
No 66
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.76 E-value=3.7e-18 Score=183.25 Aligned_cols=120 Identities=23% Similarity=0.217 Sum_probs=99.4
Q ss_pred EEcCCCChhHHHHHHHHHHHHHhcCCC-----CCCCCCeEEEEcccHHHHHHHHHHHHHhc------------cCCCceE
Q psy17644 209 GVAKTGSGKTGAFIWPMLVHIMDQKEL-----EPGDGPMGLILAPTRELSQQIYNEAKRFG------------KGYNLSV 271 (330)
Q Consensus 209 ~~a~TGsGKT~a~llp~l~~i~~~~~~-----~~~~~~~vLil~Ptr~La~Qi~~~~~~l~------------~~~~~~~ 271 (330)
++||||||||++|+||+|..++.+... ...++.++|||+|||+|+.|+++.++... ...++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 479999999999999999999865311 12346899999999999999999987521 1246888
Q ss_pred EEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCC-CCCCCccEEEeecccccCc
Q psy17644 272 VCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA-TKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 272 ~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~-~~l~~i~~lVvDEad~lld 328 (330)
..++|+.+..++.+.+++.++|||+||++|..++.++. ..+++|++|||||+|.|++
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g 138 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAG 138 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcc
Confidence 88999998888777788889999999999999886543 4689999999999999985
No 67
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=9.2e-18 Score=171.32 Aligned_cols=128 Identities=23% Similarity=0.226 Sum_probs=106.7
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
-.|.++|...--++. +--|+.++||+|||++|++|++.+++. +..|+||+||++||.|.++++..+...+
T Consensus 81 ~~~ydvQliGg~~Lh--~G~Iaem~TGeGKTL~a~Lpa~~~al~--------G~~V~VvTpn~yLA~qd~e~m~~l~~~l 150 (896)
T PRK13104 81 LRHFDVQLIGGMVLH--EGNIAEMRTGEGKTLVATLPAYLNAIS--------GRGVHIVTVNDYLAKRDSQWMKPIYEFL 150 (896)
T ss_pred CCcchHHHhhhhhhc--cCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEcCCHHHHHHHHHHHHHHhccc
Confidence 356666655444444 445899999999999999999988764 4569999999999999999999999999
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC-CCCC-----CCccEEEeecccccC
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG-ATKL-----NRVTFLVLDEADRMF 327 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~-~~~l-----~~i~~lVvDEad~ll 327 (330)
|+++.+++||.....+...+ .+||++|||++| +++++.+ ...+ +.+.++||||||+||
T Consensus 151 GLtv~~i~gg~~~~~r~~~y--~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiL 215 (896)
T PRK13104 151 GLTVGVIYPDMSHKEKQEAY--KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSIL 215 (896)
T ss_pred CceEEEEeCCCCHHHHHHHh--CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhh
Confidence 99999999998877665554 589999999999 9999876 3334 589999999999997
No 68
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.75 E-value=2.5e-17 Score=141.48 Aligned_cols=138 Identities=43% Similarity=0.650 Sum_probs=115.4
Q ss_pred CCCCCCCHHHHHhhhhhcCC-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 185 CEYTSPTPIQAQAVPAALSG-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.++..|+++|.+++..+... +.++++++||+|||.+++.+++.++... ...++||++||+.++.|+...+..+
T Consensus 4 ~~~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~------~~~~~l~~~p~~~~~~~~~~~~~~~ 77 (201)
T smart00487 4 FGFEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRG------KGKRVLVLVPTRELAEQWAEELKKL 77 (201)
T ss_pred cCCCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhccc------CCCcEEEEeCCHHHHHHHHHHHHHH
Confidence 46778999999999999998 9999999999999999999988887543 2468999999999999999999998
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCC-eEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGA-EIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~-dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
+..........+++.........+..+. +|+++|++.+...+........++.++||||||.+..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~ 143 (201)
T smart00487 78 GPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLD 143 (201)
T ss_pred hccCCeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhc
Confidence 7665545566677766555555556655 9999999999999988776778899999999999863
No 69
>KOG0952|consensus
Probab=99.71 E-value=2.6e-17 Score=166.62 Aligned_cols=141 Identities=21% Similarity=0.244 Sum_probs=115.5
Q ss_pred CCCCCCCHHHHHhhhhhc-CCCcEEEEcCCCChhHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEcccHHHHHHHHHHHH
Q psy17644 185 CEYTSPTPIQAQAVPAAL-SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQK--ELEPGDGPMGLILAPTRELSQQIYNEAK 261 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~-~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~--~~~~~~~~~vLil~Ptr~La~Qi~~~~~ 261 (330)
.+|..+..+|..++|.++ +..|+|+|||||||||..|+|.+|+.+.+.. -...+++.|+++|+|+++||..+++.+.
T Consensus 106 f~f~~fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~ 185 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFS 185 (1230)
T ss_pred ccHHHHHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHh
Confidence 467778899999999998 4569999999999999999999998877521 1233568999999999999999999988
Q ss_pred HhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC---CCCCccEEEeecccccCc
Q psy17644 262 RFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT---KLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 262 ~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~---~l~~i~~lVvDEad~lld 328 (330)
+-....|+++..+.|........ +. .++|||+||+++--..+++.. .++.|++|||||+|.|-|
T Consensus 186 kkl~~~gi~v~ELTGD~ql~~te--i~-~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd 252 (1230)
T KOG0952|consen 186 KKLAPLGISVRELTGDTQLTKTE--IA-DTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD 252 (1230)
T ss_pred hhcccccceEEEecCcchhhHHH--HH-hcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC
Confidence 87788899999999977654432 22 389999999999766665543 267899999999998863
No 70
>KOG2340|consensus
Probab=99.71 E-value=4.9e-17 Score=154.60 Aligned_cols=142 Identities=21% Similarity=0.299 Sum_probs=104.6
Q ss_pred CCCCCCHHHHHhhhhhcCCCcEEEEcCC-CChh--HHHHHHHHHHHHHhcCCCCCCC-----------------------
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDIIGVAKT-GSGK--TGAFIWPMLVHIMDQKELEPGD----------------------- 239 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~i~~a~T-GsGK--T~a~llp~l~~i~~~~~~~~~~----------------------- 239 (330)
.-..+|+.|.+++-+++++||+++...| +.|+ +..||||+|+|+++++.++.++
T Consensus 213 ~s~pltalQ~~L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~t 292 (698)
T KOG2340|consen 213 KSEPLTALQKELFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFT 292 (698)
T ss_pred ccCcchHHHHHHHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCC
Confidence 3456899999999999999999988544 4455 5789999999999887654332
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCc---------eE---------------------EEEECCCchHHHHHHHh-
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNL---------SV---------------------VCCYGGGSKWDQSKALE- 288 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~---------~~---------------------~~~~gg~~~~~~~~~l~- 288 (330)
.|+||||||||+.|..+++.+..+..+..- ++ ..++.|++...++..++
T Consensus 293 RpkVLivvpfRe~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~f 372 (698)
T KOG2340|consen 293 RPKVLIVVPFRESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAF 372 (698)
T ss_pred CceEEEEecchHHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHH
Confidence 299999999999999999999887432111 11 11233443333322221
Q ss_pred -----------CCCeEEEEChHHHHHHHHcC------CCCCCCccEEEeecccccC
Q psy17644 289 -----------LGAEIVVGTPGRIIDMVKMG------ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 289 -----------~~~dIiV~TP~~L~~~l~~~------~~~l~~i~~lVvDEad~ll 327 (330)
..+|||||+|.+|.+++.+. ...|++|+++|||.||.|+
T Consensus 373 tkKtikLys~fy~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l 428 (698)
T KOG2340|consen 373 TKKTIKLYSKFYKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIML 428 (698)
T ss_pred HHHHHHHHhhhcccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHH
Confidence 16899999999999999732 2248999999999999886
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.70 E-value=3.4e-16 Score=163.22 Aligned_cols=133 Identities=27% Similarity=0.275 Sum_probs=109.7
Q ss_pred CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
+...|+++|..++..++.+ +++++++||+|||++++++++.++.. .+.++|||+||++|+.|+...++++..
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~~-------~~~~vLvl~Pt~~L~~Q~~~~~~~~~~ 83 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK-NTLVVLPTGLGKTAIALLVIAERLHK-------KGGKVLILAPTKPLVEQHAEFFRKFLN 83 (773)
T ss_pred CcCCccHHHHHHHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHHh-------CCCeEEEEeCcHHHHHHHHHHHHHHhC
Confidence 3457899999999888876 99999999999999999988877632 467999999999999999999999865
Q ss_pred CCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
..+..+..+.|+..... +..+..+++|+|+||..+...+..+...+.++.+|||||||++.
T Consensus 84 ~~~~~v~~~~g~~~~~~-r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~ 144 (773)
T PRK13766 84 IPEEKIVVFTGEVSPEK-RAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAV 144 (773)
T ss_pred CCCceEEEEeCCCCHHH-HHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccc
Confidence 44456667777666554 34444457999999999988877777788899999999999975
No 72
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.67 E-value=2.5e-16 Score=151.27 Aligned_cols=152 Identities=25% Similarity=0.296 Sum_probs=130.2
Q ss_pred CCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhh-cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 169 FGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAA-LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 169 f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~-~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
.+++.+++.+.+.|...|+..+.|+|.-++..- +.|+|++++++|+||||++.-++-+..++. .|.+.|+|+
T Consensus 196 vdeLdipe~fk~~lk~~G~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-------~g~KmlfLv 268 (830)
T COG1202 196 VDELDIPEKFKRMLKREGIEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-------GGKKMLFLV 268 (830)
T ss_pred ccccCCcHHHHHHHHhcCcceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-------CCCeEEEEe
Confidence 578899999999999999999999999999885 599999999999999999999999988886 478999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH----HHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecc
Q psy17644 248 PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS----KALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEA 323 (330)
Q Consensus 248 Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~----~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEa 323 (330)
|..+||+|-+..++.-...+++++..-+|..-..... -.....+||||+|.+++-.+++.+ ..+.+|..|||||+
T Consensus 269 PLVALANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEi 347 (830)
T COG1202 269 PLVALANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEI 347 (830)
T ss_pred hhHHhhcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeee
Confidence 9999999999999877777888887777754332221 111235899999999999999876 67899999999999
Q ss_pred cccCc
Q psy17644 324 DRMFD 328 (330)
Q Consensus 324 d~lld 328 (330)
|.|-|
T Consensus 348 HtL~d 352 (830)
T COG1202 348 HTLED 352 (830)
T ss_pred eeccc
Confidence 99865
No 73
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.66 E-value=4.4e-16 Score=157.75 Aligned_cols=129 Identities=15% Similarity=0.066 Sum_probs=97.3
Q ss_pred HHHHHhhhhhcCCCcEEEEcCCCChhHHH---------HHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 192 PIQAQAVPAALSGRDIIGVAKTGSGKTGA---------FIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 192 ~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a---------~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
.+|.++++.+++|+++|++|+||||||.+ |++|.+.++..-. ....+++++|++|||+||.|+...+.+
T Consensus 167 ~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~--~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKID--PNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcc--cccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 58999999999999999999999999976 5555555442110 012357899999999999999999887
Q ss_pred hccC---CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 263 FGKG---YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 263 l~~~---~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
..+. .+..+...+||... .+.....++.+|||+|++. ....++++++|||||||.+..+|
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~-~~~~t~~k~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~~ 307 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPD-ELINTNPKPYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQIG 307 (675)
T ss_pred HhCccccCCceEEEEECCcch-HHhhcccCCCCEEEEeCcc-------cccccccCCEEEccccccCccch
Confidence 6543 35677888999873 2223333467999999752 12357899999999999998765
No 74
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.65 E-value=7e-16 Score=157.33 Aligned_cols=128 Identities=20% Similarity=0.216 Sum_probs=108.4
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
..|+++|.-..-++..|+ |+.++||+|||+++++|++...+. |..|-||+||+.||.|.++.+..+...+
T Consensus 80 ~~~~dvQlig~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL~--------G~~V~IvTpn~yLA~rd~e~~~~l~~~L 149 (830)
T PRK12904 80 MRHFDVQLIGGMVLHEGK--IAEMKTGEGKTLVATLPAYLNALT--------GKGVHVVTVNDYLAKRDAEWMGPLYEFL 149 (830)
T ss_pred CCCCccHHHhhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHHc--------CCCEEEEecCHHHHHHHHHHHHHHHhhc
Confidence 467888877776666664 889999999999999999755543 4457799999999999999999999999
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcCCC------CCCCccEEEeecccccC
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMGAT------KLNRVTFLVLDEADRMF 327 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~~------~l~~i~~lVvDEad~ll 327 (330)
|+++.++.||.+...+...+ .++|+++||++| +++++.+.. .++.+.++||||||+||
T Consensus 150 Glsv~~i~~~~~~~er~~~y--~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiL 214 (830)
T PRK12904 150 GLSVGVILSGMSPEERREAY--AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSIL 214 (830)
T ss_pred CCeEEEEcCCCCHHHHHHhc--CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhhe
Confidence 99999999998887766665 389999999999 999976542 36789999999999997
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.63 E-value=3.1e-15 Score=153.05 Aligned_cols=122 Identities=21% Similarity=0.269 Sum_probs=98.8
Q ss_pred CCCCHHHHHhhhhhcCC---CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 188 TSPTPIQAQAVPAALSG---RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g---~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
..+|+.|.+++..+.++ +++++.++||||||.+|+.++...+. .|.++|||+||++|+.|+++.+++..
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~--------~g~~vLvLvPt~~L~~Q~~~~l~~~f 214 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA--------QGKQALVLVPEIALTPQMLARFRARF 214 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH--------cCCeEEEEeCcHHHHHHHHHHHHHHh
Confidence 36899999999999874 78999999999999999887665543 36789999999999999999998753
Q ss_pred cCCCceEEEEECCCchHHHHH---H-HhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSK---A-LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~---~-l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+..+..++|+.+...... . ....++|||+||+.+. ..++++.+|||||+|...
T Consensus 215 ---g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s 271 (679)
T PRK05580 215 ---GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSS 271 (679)
T ss_pred ---CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccc
Confidence 567888888877654432 2 2335799999998874 457899999999999764
No 76
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.63 E-value=2.9e-15 Score=142.57 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=109.4
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
.-.++-+|..+...++.+ +++++.|||-|||+..++-+.+++... .+ ++|+|+||+-|+.|....++++..-
T Consensus 13 ~ie~R~YQ~~i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~------~~-kvlfLAPTKPLV~Qh~~~~~~v~~i 84 (542)
T COG1111 13 TIEPRLYQLNIAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWF------GG-KVLFLAPTKPLVLQHAEFCRKVTGI 84 (542)
T ss_pred cccHHHHHHHHHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhc------CC-eEEEecCCchHHHHHHHHHHHHhCC
Confidence 345777888877776654 999999999999999998888887663 34 8999999999999999999998766
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
-...++.+.|............ ...|+|+||..+.+-+..+.+++.++.++|||||||-
T Consensus 85 p~~~i~~ltGev~p~~R~~~w~-~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRA 143 (542)
T COG1111 85 PEDEIAALTGEVRPEEREELWA-KKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRA 143 (542)
T ss_pred ChhheeeecCCCChHHHHHHHh-hCCEEEeccHHHHhHHhcCccChHHceEEEechhhhc
Confidence 5567777777777665444444 4699999999999999999999999999999999984
No 77
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.62 E-value=4.2e-15 Score=141.47 Aligned_cols=124 Identities=19% Similarity=0.235 Sum_probs=91.5
Q ss_pred HHHHhhhhhcCCCc--EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC---
Q psy17644 193 IQAQAVPAALSGRD--IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY--- 267 (330)
Q Consensus 193 iQ~~~i~~~~~g~d--~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~--- 267 (330)
+|.++++.+.++.+ ++++||||||||.+|++|++.. +.+++|++||++|+.|+++.++.+....
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~-----------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~ 69 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG-----------ENDTIALYPTNALIEDQTEAIKEFVDVFKPE 69 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc-----------CCCEEEEeChHHHHHHHHHHHHHHHHhcCCC
Confidence 59999999998875 7788999999999999998842 3468999999999999999999886432
Q ss_pred -CceEEEEECCCchHH---H-----------------HHHH-hCCCeEEEEChHHHHHHHHcCCC--------CCCCccE
Q psy17644 268 -NLSVVCCYGGGSKWD---Q-----------------SKAL-ELGAEIVVGTPGRIIDMVKMGAT--------KLNRVTF 317 (330)
Q Consensus 268 -~~~~~~~~gg~~~~~---~-----------------~~~l-~~~~dIiV~TP~~L~~~l~~~~~--------~l~~i~~ 317 (330)
+..+..+.| ..... . +..+ ...++|+++||..|..++.+... .+.++.+
T Consensus 70 ~~~~v~~~~g-~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 70 RDVNLLHVSK-ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCceEEEecC-CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 344444444 32211 0 0111 23578999999999887754211 2578999
Q ss_pred EEeecccccCc
Q psy17644 318 LVLDEADRMFD 328 (330)
Q Consensus 318 lVvDEad~lld 328 (330)
|||||+|.+-.
T Consensus 149 iV~DE~H~~~~ 159 (357)
T TIGR03158 149 VIFDEFHLYDA 159 (357)
T ss_pred EEEecccccCc
Confidence 99999999753
No 78
>KOG0354|consensus
Probab=99.62 E-value=1.7e-15 Score=151.36 Aligned_cols=130 Identities=25% Similarity=0.223 Sum_probs=106.3
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
..++.+|..++-.++ |+++|+++|||+|||+++...|++|+-.. ...++|+++||+-|+.|....+..++..
T Consensus 61 ~~lR~YQ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~------p~~KiVF~aP~~pLv~QQ~a~~~~~~~~- 132 (746)
T KOG0354|consen 61 LELRNYQEELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWR------PKGKVVFLAPTRPLVNQQIACFSIYLIP- 132 (746)
T ss_pred ccccHHHHHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcC------CcceEEEeeCCchHHHHHHHHHhhccCc-
Confidence 457899999998888 99999999999999999999999998654 3489999999999999999778777654
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCC-CCCccEEEeeccccc
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATK-LNRVTFLVLDEADRM 326 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~-l~~i~~lVvDEad~l 326 (330)
-.+....||......+..+-...+|+|+||..|.+.|...... |+.+.++||||||+-
T Consensus 133 -~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra 191 (746)
T KOG0354|consen 133 -YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRT 191 (746)
T ss_pred -ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccc
Confidence 4455555664433334455566899999999999998776544 699999999999984
No 79
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.3e-15 Score=150.05 Aligned_cols=131 Identities=22% Similarity=0.322 Sum_probs=108.4
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.||..++|-|.++|..+++|+|+++..|||.||++||.+|++.. ...+|||.|..+|....+..++..
T Consensus 13 fGy~~FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~-----------~G~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 13 FGYASFRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPALLL-----------EGLTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred hCccccCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHHhc-----------CCCEEEECchHHHHHHHHHHHHHc-
Confidence 48999999999999999999999999999999999999999854 237899999999999999999886
Q ss_pred cCCCceEEEEECCCchHHHHHH---HhCC-CeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKA---LELG-AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~---l~~~-~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
|+.+.++.+..+..+.... +..+ .+++.-+|++|..--....+.-..+.++||||||++.+||
T Consensus 81 ---Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWG 147 (590)
T COG0514 81 ---GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWG 147 (590)
T ss_pred ---CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcC
Confidence 5788888887766555333 3333 7999999999976332222335678999999999999998
No 80
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.60 E-value=8.3e-15 Score=151.68 Aligned_cols=121 Identities=21% Similarity=0.235 Sum_probs=95.8
Q ss_pred HHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH-HhccCCCceE
Q psy17644 193 IQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK-RFGKGYNLSV 271 (330)
Q Consensus 193 iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~-~l~~~~~~~~ 271 (330)
+-.+++..+.+++++|++|+||||||.+|.++++.+.. .++++||+.|||++|.|++..+. .++...+..+
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~--------~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~V 77 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG--------IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTV 77 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc--------cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEE
Confidence 33456666778899999999999999999999997752 35689999999999999999875 4555556666
Q ss_pred EEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccc-ccCc
Q psy17644 272 VCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEAD-RMFD 328 (330)
Q Consensus 272 ~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad-~lld 328 (330)
...+++.. ......+|+|+||++|.+++.+ ...++++.+|||||+| ++++
T Consensus 78 Gy~vr~~~------~~s~~t~I~v~T~G~Llr~l~~-d~~L~~v~~VIiDEaHER~L~ 128 (819)
T TIGR01970 78 GYRVRGEN------KVSRRTRLEVVTEGILTRMIQD-DPELDGVGALIFDEFHERSLD 128 (819)
T ss_pred EEEEcccc------ccCCCCcEEEECCcHHHHHHhh-CcccccCCEEEEeccchhhhc
Confidence 65555433 2234579999999999999876 3569999999999999 5665
No 81
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.59 E-value=3.2e-14 Score=115.15 Aligned_cols=116 Identities=40% Similarity=0.530 Sum_probs=93.9
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS 284 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~ 284 (330)
+.+++.++||+|||..++..+...... ....++||++|++.++.|+...+..+... +..+..+.++.......
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~------~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS------LKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc------ccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHH
Confidence 468899999999998888777766544 23578999999999999999999888765 66777777776665555
Q ss_pred HHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 285 KALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 285 ~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.....+++|+|+|+..+...+.........+.++||||+|.+.
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~ 116 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLL 116 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHh
Confidence 5556678999999999998887665556788999999999875
No 82
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.58 E-value=3.5e-14 Score=149.16 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=104.9
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhh----hhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVP----AALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~----~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
+++.+...+...||. ++|.|.+.+. .+..|+++++.|+||+|||++|++|++.+.. ++.++||.+||
T Consensus 231 ~~~~~~~~~~~~~~~-~r~~Q~~~~~~i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~--------~~~~vvi~t~t 301 (850)
T TIGR01407 231 LSSLFSKNIDRLGLE-YRPEQLKLAELVLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI--------TEKPVVISTNT 301 (850)
T ss_pred ccHHHHHhhhhcCCc-cCHHHHHHHHHHHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc--------CCCeEEEEeCc
Confidence 334666777777876 8899998666 5568899999999999999999999988754 24589999999
Q ss_pred HHHHHHHHH-HHHHhccCCC--ceEEEEECCCch----------------------------------------------
Q psy17644 250 RELSQQIYN-EAKRFGKGYN--LSVVCCYGGGSK---------------------------------------------- 280 (330)
Q Consensus 250 r~La~Qi~~-~~~~l~~~~~--~~~~~~~gg~~~---------------------------------------------- 280 (330)
++|..|++. .+..+.+.++ ++++.+.|+...
T Consensus 302 ~~Lq~Ql~~~~~~~l~~~~~~~~~~~~~kG~~~ylcl~k~~~~l~~~~~~~~~~~~~~~~~~wl~~T~tGD~~el~~~~~ 381 (850)
T TIGR01407 302 KVLQSQLLEKDIPLLNEILNFKINAALIKGKSNYLSLGKFSQILKDNTDNYEFNIFKMQVLVWLTETETGDLDELNLKGG 381 (850)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCceEEEEEcchhhccHHHHHHHHhcCCCcHHHHHHHHHHHHHhccCCccCHhhccCCCc
Confidence 999999976 4555544333 666666653321
Q ss_pred -------------------------HHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 281 -------------------------WDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 281 -------------------------~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
....+.....++||||+..-|+.-+.....-+....+|||||||+|.+
T Consensus 382 ~~~~~~~i~~~~~l~~~c~~~~~Cf~~~ar~~a~~AdivItNHa~L~~~~~~~~~ilp~~~~lIiDEAH~L~d 454 (850)
T TIGR01407 382 NKMFFAQVRHDGNLSKKDLFYEVDFYNRAQKNAEQAQILITNHAYLITRLVDNPELFPSFRDLIIDEAHHLPD 454 (850)
T ss_pred chhhHHHhhcCCCCCCCCCCccccHHHHHHHHHhcCCEEEecHHHHHHHhhcccccCCCCCEEEEECcchHHH
Confidence 001111122589999999988876644333345557999999999864
No 83
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.57 E-value=1.1e-14 Score=150.98 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=93.9
Q ss_pred HHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH-HhccCCCceEE
Q psy17644 194 QAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK-RFGKGYNLSVV 272 (330)
Q Consensus 194 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~-~l~~~~~~~~~ 272 (330)
-.+++..+.++++++++|+||||||.+|.++++.... .++++||+.|||++|.|+++.+. .++...+..+.
T Consensus 10 ~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~--------~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VG 81 (812)
T PRK11664 10 LPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGG--------INGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVG 81 (812)
T ss_pred HHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCC--------cCCeEEEECChHHHHHHHHHHHHHHhCcccCceEE
Confidence 3455666778899999999999999999999886531 23589999999999999999985 45556677777
Q ss_pred EEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 273 CCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 273 ~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
..+++.... ....+|+|+||++|.+++.+ ...++++.+|||||+|.
T Consensus 82 y~vr~~~~~------~~~t~I~v~T~G~Llr~l~~-d~~L~~v~~IIlDEaHE 127 (812)
T PRK11664 82 YRMRAESKV------GPNTRLEVVTEGILTRMIQR-DPELSGVGLVILDEFHE 127 (812)
T ss_pred EEecCcccc------CCCCcEEEEChhHHHHHHhh-CCCcCcCcEEEEcCCCc
Confidence 777765432 23468999999999998875 34699999999999996
No 84
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.57 E-value=7.6e-15 Score=139.70 Aligned_cols=115 Identities=23% Similarity=0.172 Sum_probs=81.1
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCch-----
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK----- 280 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~----- 280 (330)
+++++||||||||.+|++|++..+... .+.+++|++|||+|+.|+++.+..++.. .+..++|+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~------~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~ 71 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ------KADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKE 71 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC------CCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhc
Confidence 589999999999999999999875432 4679999999999999999999987432 23333332221
Q ss_pred ------HHH-HHHH-h-----CCCeEEEEChHHHHHHHHcCCCC----C--CCccEEEeecccccCcC
Q psy17644 281 ------WDQ-SKAL-E-----LGAEIVVGTPGRIIDMVKMGATK----L--NRVTFLVLDEADRMFDM 329 (330)
Q Consensus 281 ------~~~-~~~l-~-----~~~dIiV~TP~~L~~~l~~~~~~----l--~~i~~lVvDEad~lld~ 329 (330)
... .... . ..++|+|+||+++...+...... + -...+|||||||.++++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~ 139 (358)
T TIGR01587 72 MGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY 139 (358)
T ss_pred cCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH
Confidence 000 0001 1 13689999999999877652111 1 12379999999999874
No 85
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1e-14 Score=148.88 Aligned_cols=127 Identities=17% Similarity=0.211 Sum_probs=104.0
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.|+++|.-.--++ .+.-|+.++||.|||++|.+|++.+.+. |..|.||+|++.||.|..+++..+...+|
T Consensus 82 ~~ydVQliGgl~L--~~G~IaEm~TGEGKTL~a~lp~~l~al~--------g~~VhIvT~ndyLA~RD~e~m~~l~~~lG 151 (908)
T PRK13107 82 RHFDVQLLGGMVL--DSNRIAEMRTGEGKTLTATLPAYLNALT--------GKGVHVITVNDYLARRDAENNRPLFEFLG 151 (908)
T ss_pred CcCchHHhcchHh--cCCccccccCCCCchHHHHHHHHHHHhc--------CCCEEEEeCCHHHHHHHHHHHHHHHHhcC
Confidence 5666775444334 4455889999999999999999988764 45699999999999999999999999999
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC-CCC-----CCCccEEEeecccccC
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG-ATK-----LNRVTFLVLDEADRMF 327 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~-~~~-----l~~i~~lVvDEad~ll 327 (330)
+++.++.+|.+...... .-+|||++|||++| +++++.+ ... .+.+.++||||||.||
T Consensus 152 lsv~~i~~~~~~~~r~~--~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiL 215 (908)
T PRK13107 152 LTVGINVAGLGQQEKKA--AYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSIL 215 (908)
T ss_pred CeEEEecCCCCHHHHHh--cCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhc
Confidence 99999999888644322 23689999999999 9988766 333 3788999999999998
No 86
>KOG0352|consensus
Probab=99.49 E-value=6e-14 Score=130.84 Aligned_cols=137 Identities=22% Similarity=0.330 Sum_probs=99.7
Q ss_pred HHHHHHHC-CCCC-CCHHHHHhhhhhcCC-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q psy17644 178 LMKALRKC-EYTS-PTPIQAQAVPAALSG-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQ 254 (330)
Q Consensus 178 l~~~l~~~-~~~~-pt~iQ~~~i~~~~~g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~ 254 (330)
+..+|++. |+.+ -+++|.+++..+..+ +||+++.|||+||++||.||+|.+ +..+||+.|..+|+.
T Consensus 7 VreaLKK~FGh~kFKs~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~-----------~gITIV~SPLiALIk 75 (641)
T KOG0352|consen 7 VREALKKLFGHKKFKSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH-----------GGITIVISPLIALIK 75 (641)
T ss_pred HHHHHHHHhCchhhcChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHHHh-----------CCeEEEehHHHHHHH
Confidence 44455443 4443 379999999998855 699999999999999999999977 348999999999999
Q ss_pred HHHHHHHHhccCCCceEEEEECCCchHHHHHH------HhCCCeEEEEChHHHHH-----HHHcCCCCCCCccEEEeecc
Q psy17644 255 QIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA------LELGAEIVVGTPGRIID-----MVKMGATKLNRVTFLVLDEA 323 (330)
Q Consensus 255 Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~------l~~~~dIiV~TP~~L~~-----~l~~~~~~l~~i~~lVvDEa 323 (330)
...+.+.++- +.+-.+.+-.+..+..+. .+.+..|+.-||++... +++ ...+-.-+.|+|||||
T Consensus 76 DQiDHL~~LK----Vp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEA 150 (641)
T KOG0352|consen 76 DQIDHLKRLK----VPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEA 150 (641)
T ss_pred HHHHHHHhcC----CchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechh
Confidence 9999988872 333333333343333222 23357899999987533 332 2233456899999999
Q ss_pred cccCcCC
Q psy17644 324 DRMFDMG 330 (330)
Q Consensus 324 d~lld~G 330 (330)
|++.+||
T Consensus 151 HCVSQWG 157 (641)
T KOG0352|consen 151 HCVSQWG 157 (641)
T ss_pred hhHhhhc
Confidence 9999998
No 87
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.48 E-value=4.4e-13 Score=139.64 Aligned_cols=129 Identities=22% Similarity=0.269 Sum_probs=97.0
Q ss_pred CCCHHHHHhhhhh----cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH-HHHHHh
Q psy17644 189 SPTPIQAQAVPAA----LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY-NEAKRF 263 (330)
Q Consensus 189 ~pt~iQ~~~i~~~----~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~-~~~~~l 263 (330)
.+++.|.+....+ ..++.+++.|+||+|||++|++|++.+. .+.++||++|||+|+.|++ ..+..+
T Consensus 245 e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~---------~~~~vvI~t~T~~Lq~Ql~~~~i~~l 315 (820)
T PRK07246 245 EERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS---------DQRQIIVSVPTKILQDQIMAEEVKAI 315 (820)
T ss_pred ccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc---------CCCcEEEEeCcHHHHHHHHHHHHHHH
Confidence 5889999855544 3678899999999999999999988753 3578999999999999995 667777
Q ss_pred ccCCCceEEEEECCCch---HHHH--------------------------------------------------------
Q psy17644 264 GKGYNLSVVCCYGGGSK---WDQS-------------------------------------------------------- 284 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~---~~~~-------------------------------------------------------- 284 (330)
.+..++++.++.||... ....
T Consensus 316 ~~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~ 395 (820)
T PRK07246 316 QEVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQS 395 (820)
T ss_pred HHhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCC
Confidence 77777777777775531 0000
Q ss_pred ------------HHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 285 ------------KALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 285 ------------~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+.....++|||++..-|...+.... .+....+|||||||+|-
T Consensus 396 cp~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~-~~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 396 SLFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDK-DFARNKVLVFDEAQKLM 449 (820)
T ss_pred CCcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhcc-CCCCCCEEEEECcchhH
Confidence 0001157999999998887664432 35678999999999985
No 88
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.48 E-value=5.1e-13 Score=134.17 Aligned_cols=125 Identities=22% Similarity=0.160 Sum_probs=91.2
Q ss_pred hhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc-cC--CCceEEEE
Q psy17644 198 VPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG-KG--YNLSVVCC 274 (330)
Q Consensus 198 i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~-~~--~~~~~~~~ 274 (330)
...+.+++.+++.|+||+|||++|++|++.++... .+.++||++||++|+.|+++.+..+. +. .+++++++
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~------~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~l 83 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER------PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFF 83 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc------cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEE
Confidence 34455788899999999999999999999887642 35789999999999999999988877 32 24555555
Q ss_pred ECCCch--------------------------------------------------------------------------
Q psy17644 275 YGGGSK-------------------------------------------------------------------------- 280 (330)
Q Consensus 275 ~gg~~~-------------------------------------------------------------------------- 280 (330)
.|+.+.
T Consensus 84 kGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~~~~~~~ 163 (636)
T TIGR03117 84 PGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDVTLAIRE 163 (636)
T ss_pred ECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhhhccccC
Confidence 443210
Q ss_pred ------HHHHHHH---hCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 281 ------WDQSKAL---ELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 281 ------~~~~~~l---~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
....+.. ...++|||+++..|...++....-+....+|||||||+|-+
T Consensus 164 ~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 164 DDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred CCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 0000111 23579999999988876654333466789999999999864
No 89
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.44 E-value=7.6e-13 Score=113.05 Aligned_cols=128 Identities=24% Similarity=0.221 Sum_probs=86.9
Q ss_pred CCCHHHHHhhhhhcC-------CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q psy17644 189 SPTPIQAQAVPAALS-------GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK 261 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~-------g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~ 261 (330)
+|++.|.+++..+.. ++.+++.++||||||.+++..+.... . ++||++|++.|+.|+...+.
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~----------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-R----------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C----------EEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-c----------ceeEecCHHHHHHHHHHHHH
Confidence 478999999998883 68999999999999988775444332 1 89999999999999999997
Q ss_pred HhccCCCceEEE-----------EECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCC-----------CCCCCccEEE
Q psy17644 262 RFGKGYNLSVVC-----------CYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA-----------TKLNRVTFLV 319 (330)
Q Consensus 262 ~l~~~~~~~~~~-----------~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~-----------~~l~~i~~lV 319 (330)
.+.......... ..................+|+++|...|........ .......+||
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 765432111111 111111112223334467999999999998775321 1234678999
Q ss_pred eecccccC
Q psy17644 320 LDEADRMF 327 (330)
Q Consensus 320 vDEad~ll 327 (330)
+||||++.
T Consensus 152 ~DEaH~~~ 159 (184)
T PF04851_consen 152 IDEAHHYP 159 (184)
T ss_dssp EETGGCTH
T ss_pred EehhhhcC
Confidence 99999874
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.42 E-value=7.9e-13 Score=129.23 Aligned_cols=122 Identities=25% Similarity=0.247 Sum_probs=88.0
Q ss_pred CCCCHHHHHhhhhhcC----CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAALS----GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~----g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..|+++|.+++..+.+ ++..++++|||+|||++++..+... +..+||||||++|+.||.+.+.++
T Consensus 35 ~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~-----------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 35 FELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL-----------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh-----------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 4689999999999998 8999999999999997776544322 233999999999999998777766
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
.... .....+||...... . ..|.|+|...+.............+.+|||||||++..
T Consensus 104 ~~~~--~~~g~~~~~~~~~~-----~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a 160 (442)
T COG1061 104 LLLN--DEIGIYGGGEKELE-----P-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPA 160 (442)
T ss_pred cCCc--cccceecCceeccC-----C-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCc
Confidence 4321 23445555544321 1 36999998887764211122234799999999999863
No 91
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.40 E-value=1.6e-12 Score=132.08 Aligned_cols=123 Identities=18% Similarity=0.143 Sum_probs=87.4
Q ss_pred CCCCHHHHHhhhhhc-CC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 188 TSPTPIQAQAVPAAL-SG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~-~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
..++|+|.+++..++ +| +..+++.|||+|||++.+..+. ++ +.++|||||+..|+.||.+++.+|+
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~-~l----------~k~tLILvps~~Lv~QW~~ef~~~~ 322 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAAC-TV----------KKSCLVLCTSAVSVEQWKQQFKMWS 322 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHH-Hh----------CCCEEEEeCcHHHHHHHHHHHHHhc
Confidence 468999999999988 44 4789999999999988765443 22 2458999999999999999999986
Q ss_pred cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC--------CCCCCCccEEEeeccccc
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG--------ATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~--------~~~l~~i~~lVvDEad~l 326 (330)
......+..+.|+... . ......|+|+|+..+.....+. .+.-..+.+||+||||++
T Consensus 323 ~l~~~~I~~~tg~~k~-~----~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~l 387 (732)
T TIGR00603 323 TIDDSQICRFTSDAKE-R----FHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVV 387 (732)
T ss_pred CCCCceEEEEecCccc-c----cccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccc
Confidence 5434444444443221 1 1123689999998775332211 112246789999999987
No 92
>KOG0351|consensus
Probab=99.40 E-value=2.8e-13 Score=140.68 Aligned_cols=133 Identities=21% Similarity=0.267 Sum_probs=106.5
Q ss_pred HHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 183 RKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 183 ~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
...|...++|-|.++|..++.|+|+++..|||.||++||.||++.. ++.+|||.|...|+..+...+.+
T Consensus 258 ~~Fg~~~FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~-----------~gitvVISPL~SLm~DQv~~L~~ 326 (941)
T KOG0351|consen 258 EVFGHKGFRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALLL-----------GGVTVVISPLISLMQDQVTHLSK 326 (941)
T ss_pred HHhccccCChhHHHHHHHHHcCCceEEEeecCCceeeEeecccccc-----------CCceEEeccHHHHHHHHHHhhhh
Confidence 4568899999999999999999999999999999999999999854 56899999999999887777644
Q ss_pred hccCCCceEEEEECCCchHHHHHH---HhC---CCeEEEEChHHHHHHH--HcCCCCCCC---ccEEEeecccccCcCC
Q psy17644 263 FGKGYNLSVVCCYGGGSKWDQSKA---LEL---GAEIVVGTPGRIIDMV--KMGATKLNR---VTFLVLDEADRMFDMG 330 (330)
Q Consensus 263 l~~~~~~~~~~~~gg~~~~~~~~~---l~~---~~dIiV~TP~~L~~~l--~~~~~~l~~---i~~lVvDEad~lld~G 330 (330)
. ++...++.++....++... +.. ..+|+..||+++..-- ......+.. +.++||||||+...||
T Consensus 327 ~----~I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWg 401 (941)
T KOG0351|consen 327 K----GIPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWG 401 (941)
T ss_pred c----CcceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhc
Confidence 3 6788888888877544322 222 4799999999986522 222223444 8999999999999998
No 93
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.39 E-value=6.1e-12 Score=128.22 Aligned_cols=142 Identities=21% Similarity=0.311 Sum_probs=104.3
Q ss_pred HHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 178 LMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 178 l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
+-+.+.+.....|+..|+.+...++.|+..-++||||.||| +|.+.+-..+.+ .|.+++||+||+.|+.|++
T Consensus 71 ~~~fF~k~~G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKT-Tfg~~~sl~~a~-------kgkr~yii~PT~~Lv~Q~~ 142 (1187)
T COG1110 71 FEEFFKKATGFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKT-TFGLLMSLYLAK-------KGKRVYIIVPTTTLVRQVY 142 (1187)
T ss_pred HHHHHHHhhCCCchHHHHHHHHHHHcCCceEEEcCCCCchh-HHHHHHHHHHHh-------cCCeEEEEecCHHHHHHHH
Confidence 34445566555999999999999999999999999999999 455444434333 4689999999999999999
Q ss_pred HHHHHhccCCC-ceEEEEECCC-chH---HHHHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 258 NEAKRFGKGYN-LSVVCCYGGG-SKW---DQSKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 258 ~~~~~l~~~~~-~~~~~~~gg~-~~~---~~~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
+.+.+|+...+ ..+..+|.+. ... .....+.+ +.||+|+|..-|..-+..- .--+++++++|.+|.+|-.
T Consensus 143 ~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L--~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 143 ERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEEL--SKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred HHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHh--cccCCCEEEEccHHHHHhc
Confidence 99999987666 4444435555 322 22334444 5899999987776655421 1136899999999988743
No 94
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.37 E-value=9.5e-12 Score=115.04 Aligned_cols=73 Identities=22% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCCHHHHHhh----hhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 189 SPTPIQAQAV----PAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 189 ~pt~iQ~~~i----~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.|+|.|.+.+ ..+.+|.++++.||||+|||++|++|++.++...... ..+.+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999954 4455889999999999999999999999887654221 12358999999999999988887765
No 95
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.37 E-value=9.5e-12 Score=115.04 Aligned_cols=73 Identities=22% Similarity=0.168 Sum_probs=58.7
Q ss_pred CCCHHHHHhh----hhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 189 SPTPIQAQAV----PAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 189 ~pt~iQ~~~i----~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.|+|.|.+.+ ..+.+|.++++.||||+|||++|++|++.++...... ..+.+++|+++|..+..|....++++
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~--~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPER--IQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCccc--ccccceeEEeccHHHHHHHHHHHHhc
Confidence 4699999954 4455889999999999999999999999887654221 12358999999999999988887765
No 96
>KOG0353|consensus
Probab=99.37 E-value=2.9e-12 Score=118.11 Aligned_cols=145 Identities=19% Similarity=0.318 Sum_probs=108.9
Q ss_pred CCCCCHHHHHHHHH-CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 171 HFGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 171 ~~~l~~~l~~~l~~-~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
.|+.+.+....|+. ....+++|+|..+|.+.+.|.|++++.|||.||++||.||+|-. ...+|||+|.
T Consensus 75 ~fpws~e~~~ilk~~f~lekfrplq~~ain~~ma~ed~~lil~tgggkslcyqlpal~a-----------dg~alvi~pl 143 (695)
T KOG0353|consen 75 DFPWSDEAKDILKEQFHLEKFRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPALCA-----------DGFALVICPL 143 (695)
T ss_pred CCCCchHHHHHHHHHhhHHhcChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHHhc-----------CCceEeechh
Confidence 34555555555543 35678999999999999999999999999999999999999853 5778999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHH---HH-hC--CCeEEEEChHHHHH---HHHc--CCCCCCCccEE
Q psy17644 250 RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK---AL-EL--GAEIVVGTPGRIID---MVKM--GATKLNRVTFL 318 (330)
Q Consensus 250 r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~---~l-~~--~~dIiV~TP~~L~~---~l~~--~~~~l~~i~~l 318 (330)
..|+....-.++.+ |+....+....++.+..+ .+ .+ ...+|..||+.+.. ++++ +......+.++
T Consensus 144 islmedqil~lkql----gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~i 219 (695)
T KOG0353|consen 144 ISLMEDQILQLKQL----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLI 219 (695)
T ss_pred HHHHHHHHHHHHHh----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEE
Confidence 99999988888887 455555544444433211 11 11 35789999999854 3322 34456788999
Q ss_pred EeecccccCcCC
Q psy17644 319 VLDEADRMFDMG 330 (330)
Q Consensus 319 VvDEad~lld~G 330 (330)
-|||+|+..+||
T Consensus 220 aidevhccsqwg 231 (695)
T KOG0353|consen 220 AIDEVHCCSQWG 231 (695)
T ss_pred eecceeehhhhC
Confidence 999999999998
No 97
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.33 E-value=1.2e-11 Score=122.50 Aligned_cols=140 Identities=23% Similarity=0.288 Sum_probs=113.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC------CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAALSG------RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g------~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
....+++.+.+.=..++|..|++++.-|... .+-++++--|||||++.++.++..+- +|.++..++
T Consensus 247 ~~~~l~~~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~--------~G~Q~ALMA 318 (677)
T COG1200 247 ANGELLAKFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE--------AGYQAALMA 318 (677)
T ss_pred ccHHHHHHHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH--------cCCeeEEec
Confidence 4445666665555557999999999988732 46788999999999999999988764 588999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEECCCchHH---HHHHHhCC-CeEEEEChHHHHHHHHcCCCCCCCccEEEeecc
Q psy17644 248 PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD---QSKALELG-AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEA 323 (330)
Q Consensus 248 Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~---~~~~l~~~-~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEa 323 (330)
||--||.|.+..+.++....++++..+.|...... ....+.+| .+|||+|..-+. ....++++.++|+||-
T Consensus 319 PTEILA~QH~~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQ-----d~V~F~~LgLVIiDEQ 393 (677)
T COG1200 319 PTEILAEQHYESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQ-----DKVEFHNLGLVIIDEQ 393 (677)
T ss_pred cHHHHHHHHHHHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhh-----cceeecceeEEEEecc
Confidence 99999999999999999999999999998665433 34445555 899999975554 3455899999999999
Q ss_pred ccc
Q psy17644 324 DRM 326 (330)
Q Consensus 324 d~l 326 (330)
||.
T Consensus 394 HRF 396 (677)
T COG1200 394 HRF 396 (677)
T ss_pred ccc
Confidence 986
No 98
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.33 E-value=8e-12 Score=133.29 Aligned_cols=131 Identities=21% Similarity=0.192 Sum_probs=89.8
Q ss_pred CCCCHHHHHhhhhhc----C-CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAAL----S-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~-g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
..++++|..+|..+. . .+.++++++||||||.+.+ .++.++++.. ...++|||+|+++|+.|+...++.
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~-----~~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAK-----RFRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcC-----ccCeEEEEecHHHHHHHHHHHHHh
Confidence 358999999998775 2 4689999999999997744 3444555432 346999999999999999999998
Q ss_pred hccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC-----CCCCCCccEEEeeccccc
Q psy17644 263 FGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG-----ATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 263 l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~-----~~~l~~i~~lVvDEad~l 326 (330)
+....+..+..+++...... ........|+|||...|...+... ...+..+.+||+||||+-
T Consensus 486 ~~~~~~~~~~~i~~i~~L~~--~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs 552 (1123)
T PRK11448 486 TKIEGDQTFASIYDIKGLED--KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRG 552 (1123)
T ss_pred cccccccchhhhhchhhhhh--hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCC
Confidence 74322212222222111111 111234799999999987765321 134678889999999995
No 99
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.33 E-value=1.1e-11 Score=122.84 Aligned_cols=102 Identities=21% Similarity=0.276 Sum_probs=78.0
Q ss_pred EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---
Q psy17644 208 IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS--- 284 (330)
Q Consensus 208 i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~--- 284 (330)
++.|+||||||.+|+.. +.+++. .+.++|||+|+++|+.|+++.+++.. +..+..++|+.+..+..
T Consensus 1 LL~g~TGsGKT~v~l~~-i~~~l~-------~g~~vLvlvP~i~L~~Q~~~~l~~~f---~~~v~vlhs~~~~~er~~~~ 69 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQA-IEKVLA-------LGKSVLVLVPEIALTPQMIQRFKYRF---GSQVAVLHSGLSDSEKLQAW 69 (505)
T ss_pred CccCCCCCCHHHHHHHH-HHHHHH-------cCCeEEEEeCcHHHHHHHHHHHHHHh---CCcEEEEECCCCHHHHHHHH
Confidence 46799999999998654 444444 36789999999999999999998753 45677888877654432
Q ss_pred HHHh-CCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 285 KALE-LGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 285 ~~l~-~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
..+. ..++|||||+..+. ..++++.+|||||+|...
T Consensus 70 ~~~~~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~s 106 (505)
T TIGR00595 70 RKVKNGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSS 106 (505)
T ss_pred HHHHcCCCCEEECChHHHc-------CcccCCCEEEEECCCccc
Confidence 2233 34799999998774 357899999999999865
No 100
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.32 E-value=5.2e-12 Score=131.07 Aligned_cols=130 Identities=23% Similarity=0.256 Sum_probs=101.8
Q ss_pred HCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 184 KCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 184 ~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..+| .+.++|+.++-++-.|..+++|||||+|||++.-.++...+. +|.++++.+|.++|..|.+..+...
T Consensus 115 ~~~F-~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~--------~~qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 115 EYPF-ELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR--------DGQRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred hCCC-CcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH--------cCCceEeccchhhhhhhHHHHHHHH
Confidence 3444 689999999999999999999999999999775544433322 4677999999999999999997765
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
.....-.+.++.|..+. ...+.++|.|-+.|..|+.++...+..+.+||+||+|.|-|+
T Consensus 186 fgdv~~~vGL~TGDv~I-------N~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~ 244 (1041)
T COG4581 186 FGDVADMVGLMTGDVSI-------NPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR 244 (1041)
T ss_pred hhhhhhhccceecceee-------CCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc
Confidence 43321122344443332 345789999999999999999888999999999999999875
No 101
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.31 E-value=2.8e-11 Score=128.14 Aligned_cols=133 Identities=16% Similarity=0.186 Sum_probs=93.2
Q ss_pred CCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH----
Q psy17644 188 TSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE---- 259 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~---- 259 (330)
-.++|-|.+.+..+. .++.+++.|+||+|||++||+|++.+... ++.+++|-++|+.|..|++..
T Consensus 256 ~e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~-------~~~~vvIsT~T~~LQ~Ql~~kDiP~ 328 (928)
T PRK08074 256 YEKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK-------KEEPVVISTYTIQLQQQLLEKDIPL 328 (928)
T ss_pred CcCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc-------cCCeEEEEcCCHHHHHHHHHhhHHH
Confidence 368999999666544 77889999999999999999999876543 467899999999999999774
Q ss_pred HHHhccCCCceEEEEECCCc------------------------------------------------------------
Q psy17644 260 AKRFGKGYNLSVVCCYGGGS------------------------------------------------------------ 279 (330)
Q Consensus 260 ~~~l~~~~~~~~~~~~gg~~------------------------------------------------------------ 279 (330)
++++.. .+++++++.|...
T Consensus 329 L~~~~~-~~~~~~~lKGr~nYlcl~k~~~~l~~~~~~~~~~~~~~~ll~Wl~~T~tGD~dEl~~~~~~~~~w~~i~~~~~ 407 (928)
T PRK08074 329 LQKIFP-FPVEAALLKGRSHYLCLRKFEQALQEEDDNYDVALTKAQLLVWLTETETGDLDELNLPSGGKLLWNRIASDGE 407 (928)
T ss_pred HHHHcC-CCceEEEEEcccccccHHHHHHHHhccCCCHHHHHHHHHHHHHHccCCCCCHHHccCCCCCcchHHHhhccCc
Confidence 333321 2334444443221
Q ss_pred -------------hHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 280 -------------KWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 280 -------------~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
.....+.....++|||++..-|+.-+.....-+....++||||||+|-+
T Consensus 408 ~c~~~~cp~~~~Cf~~~ar~~a~~AdivItNHalLl~dl~~~~~ilp~~~~lViDEAH~l~d 469 (928)
T PRK08074 408 SDGGKQSPWFSRCFYQRAKNRAKFADLVITNHALLLTDLTSEEPLLPSYEHIIIDEAHHFEE 469 (928)
T ss_pred ccCCCCCCcccccHHHHHHHHHhcCCEEEECHHHHHHHHhhhcccCCCCCeEEEECCchHHH
Confidence 1111111122589999999988876643333356679999999999864
No 102
>KOG0951|consensus
Probab=99.28 E-value=7.9e-12 Score=129.07 Aligned_cols=140 Identities=19% Similarity=0.226 Sum_probs=111.0
Q ss_pred CCCCCCCHHHHHhhhhhcCC-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC---CCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 185 CEYTSPTPIQAQAVPAALSG-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE---PGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~---~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
.|...+.++|..+.++++.+ .++++|||||+|||-..++-+|+.+-...... .....++++++|+..||+.++..+
T Consensus 305 ~g~~sLNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 305 FGKQSLNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred ccchhhhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 35667899999999999866 58999999999999999999999886654322 123569999999999999999999
Q ss_pred HHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC--CCCCccEEEeecccccC
Q psy17644 261 KRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT--KLNRVTFLVLDEADRMF 327 (330)
Q Consensus 261 ~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--~l~~i~~lVvDEad~ll 327 (330)
.+....+|+++.-..|......+. + .+.+||||||+.+--+-++... ..+-++++|+||.|.+-
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~q--i-eeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLh 450 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKEQ--I-EETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLH 450 (1674)
T ss_pred HhhccccCcEEEEecccccchhhh--h-hcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcc
Confidence 998899999999999876533221 1 2479999999998655544322 24568999999999884
No 103
>PRK09694 helicase Cas3; Provisional
Probab=99.26 E-value=3.4e-11 Score=125.33 Aligned_cols=134 Identities=19% Similarity=0.145 Sum_probs=89.5
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
...|+|+|..+........-+|+.||||+|||.+.++.+.. ++.. +...+++|.+||++++.|++..++++.+.
T Consensus 284 ~~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~-l~~~-----~~~~gi~~aLPT~Atan~m~~Rl~~~~~~ 357 (878)
T PRK09694 284 GYQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWR-LIDQ-----GLADSIIFALPTQATANAMLSRLEALASK 357 (878)
T ss_pred CCCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHH-HHHh-----CCCCeEEEECcHHHHHHHHHHHHHHHHHH
Confidence 45899999988655445566888899999999988776553 3332 13468999999999999999998875432
Q ss_pred C--CceEEEEECCCchHHHH---------------------HHHh------CCCeEEEEChHHHHHHHHc-CCCCCCC--
Q psy17644 267 Y--NLSVVCCYGGGSKWDQS---------------------KALE------LGAEIVVGTPGRIIDMVKM-GATKLNR-- 314 (330)
Q Consensus 267 ~--~~~~~~~~gg~~~~~~~---------------------~~l~------~~~dIiV~TP~~L~~~l~~-~~~~l~~-- 314 (330)
. ...+.+.+|+....... ..+. .-++|+|||...++..+-. +...++.
T Consensus 358 ~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~ 437 (878)
T PRK09694 358 LFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFG 437 (878)
T ss_pred hcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHh
Confidence 2 24566666654311100 1111 1269999999998864432 2222222
Q ss_pred --ccEEEeeccccc
Q psy17644 315 --VTFLVLDEADRM 326 (330)
Q Consensus 315 --i~~lVvDEad~l 326 (330)
-.+|||||+|..
T Consensus 438 La~svvIiDEVHAy 451 (878)
T PRK09694 438 LGRSVLIVDEVHAY 451 (878)
T ss_pred hccCeEEEechhhC
Confidence 258999999975
No 104
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.22 E-value=3.9e-11 Score=127.84 Aligned_cols=119 Identities=18% Similarity=0.230 Sum_probs=78.5
Q ss_pred HHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc----cHHHHHHHHHHHHH-hccCCC
Q psy17644 194 QAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP----TRELSQQIYNEAKR-FGKGYN 268 (330)
Q Consensus 194 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P----tr~La~Qi~~~~~~-l~~~~~ 268 (330)
-.+++.++..++.++++|+||||||. .+|.+....... ....+++.-| +++||.|+..++.. ++...|
T Consensus 79 r~~Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g-----~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VG 151 (1294)
T PRK11131 79 KQDILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRG-----VKGLIGHTQPRRLAARTVANRIAEELETELGGCVG 151 (1294)
T ss_pred HHHHHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCC-----CCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceec
Confidence 34555666677778888999999996 578543322110 1122223335 67888888888774 444333
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccc-ccCcCC
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEAD-RMFDMG 330 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad-~lld~G 330 (330)
..+ ... .....+++|+|+|||+|+..+.... .++++++||||||| +++++|
T Consensus 152 Y~v----rf~------~~~s~~t~I~v~TpG~LL~~l~~d~-~Ls~~~~IIIDEAHERsLn~D 203 (1294)
T PRK11131 152 YKV----RFN------DQVSDNTMVKLMTDGILLAEIQQDR-LLMQYDTIIIDEAHERSLNID 203 (1294)
T ss_pred eee----cCc------cccCCCCCEEEEChHHHHHHHhcCC-ccccCcEEEecCccccccccc
Confidence 322 111 1123468999999999999987643 48999999999999 688764
No 105
>KOG0947|consensus
Probab=99.17 E-value=1.2e-10 Score=117.98 Aligned_cols=122 Identities=20% Similarity=0.199 Sum_probs=100.3
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
..|.++|++||-++..|-.|++.|+|.+|||+++-.++... + .++.+++|-+|-++|.+|-++.++.-....
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAiala---q-----~h~TR~iYTSPIKALSNQKfRDFk~tF~Dv 367 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALA---Q-----KHMTRTIYTSPIKALSNQKFRDFKETFGDV 367 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHH---H-----hhccceEecchhhhhccchHHHHHHhcccc
Confidence 46899999999999999999999999999997744433221 1 157889999999999999999998765543
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
| .+.|..... ..+.++|.|-+-|+.|+-++..-++++++||+||+|-+-|
T Consensus 368 g----LlTGDvqin-------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND 417 (1248)
T KOG0947|consen 368 G----LLTGDVQIN-------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIND 417 (1248)
T ss_pred c----eeecceeeC-------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccc
Confidence 4 566654432 3478999999999999999988899999999999998875
No 106
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.16 E-value=1.2e-10 Score=119.41 Aligned_cols=128 Identities=19% Similarity=0.150 Sum_probs=101.1
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
-.|+++|...--++ .+--|+...||+|||+++.+|++...+. |..|.||+||.-||.|-+.++..+...+
T Consensus 81 m~~ydVQliGg~~L--h~G~iaEM~TGEGKTLvA~l~a~l~al~--------G~~VhvvT~ndyLA~RD~e~m~~l~~~l 150 (913)
T PRK13103 81 MRHFDVQLIGGMTL--HEGKIAEMRTGEGKTLVGTLAVYLNALS--------GKGVHVVTVNDYLARRDANWMRPLYEFL 150 (913)
T ss_pred CCcchhHHHhhhHh--ccCccccccCCCCChHHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 45667776544334 4556889999999999999999877664 7789999999999999999999999999
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcCC------CCCCCccEEEeecccccC
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMGA------TKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~------~~l~~i~~lVvDEad~ll 327 (330)
|+++.++.++.........+. |+|+++|..-| +++|+.+. ...+.+.|+||||+|.||
T Consensus 151 Gl~v~~i~~~~~~~err~~Y~--~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 151 GLSVGIVTPFQPPEEKRAAYA--ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CCEEEEECCCCCHHHHHHHhc--CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 999999988777665554444 89999999886 34443221 124789999999999987
No 107
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=2.5e-10 Score=114.73 Aligned_cols=129 Identities=16% Similarity=0.125 Sum_probs=104.0
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
...|++.|.-..-.++.|+ |+...||+|||++..+|++...+. |..|.|++||.-||.|-++++..+...
T Consensus 76 g~r~ydvQlig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~--------G~~VhvvT~NdyLA~RDae~m~~ly~~ 145 (764)
T PRK12326 76 GLRPFDVQLLGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ--------GRRVHVITVNDYLARRDAEWMGPLYEA 145 (764)
T ss_pred CCCcchHHHHHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc--------CCCeEEEcCCHHHHHHHHHHHHHHHHh
Confidence 3468889988888888774 778999999999999999887764 778999999999999999999999999
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC------CCCCCCccEEEeecccccC
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG------ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~------~~~l~~i~~lVvDEad~ll 327 (330)
+|+++.++.++.+.......+ .|||+.+|..-| +++|+.+ ......+.+.||||+|.||
T Consensus 146 LGLsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 146 LGLTVGWITEESTPEERRAAY--ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred cCCEEEEECCCCCHHHHHHHH--cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 999999998887766544444 489999998765 2233221 1124568899999999987
No 108
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=99.15 E-value=1.1e-09 Score=99.53 Aligned_cols=130 Identities=23% Similarity=0.225 Sum_probs=100.0
Q ss_pred CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
-...|++.|..++-.+..|+ |+...||-|||++..+|++.+.+. |..|-|++....||.+=++++..+..
T Consensus 74 ~g~~p~~vQll~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~--------G~~V~vvT~NdyLA~RD~~~~~~~y~ 143 (266)
T PF07517_consen 74 LGLRPYDVQLLGALALHKGR--LAEMKTGEGKTLIAALPAALNALQ--------GKGVHVVTSNDYLAKRDAEEMRPFYE 143 (266)
T ss_dssp TS----HHHHHHHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT--------SS-EEEEESSHHHHHHHHHHHHHHHH
T ss_pred cCCcccHHHHhhhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh--------cCCcEEEeccHHHhhccHHHHHHHHH
Confidence 34578899988887776666 899999999999999888877764 67889999999999999999999999
Q ss_pred CCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHH-HHHcCCC------CCCCccEEEeecccccC
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIID-MVKMGAT------KLNRVTFLVLDEADRMF 327 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~-~l~~~~~------~l~~i~~lVvDEad~ll 327 (330)
.+|+++.++.++.........+. ++|+.+|...+.- +++.... ....+.++||||||.||
T Consensus 144 ~LGlsv~~~~~~~~~~~r~~~Y~--~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 144 FLGLSVGIITSDMSSEERREAYA--ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp HTT--EEEEETTTEHHHHHHHHH--SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred HhhhccccCccccCHHHHHHHHh--CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999999999888655444444 5899999998753 5543211 15688999999999887
No 109
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.13 E-value=2.8e-10 Score=116.31 Aligned_cols=129 Identities=19% Similarity=0.196 Sum_probs=103.9
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
-..|++.|.-..-++..|+ |+...||+|||++..+|++...+. |..|-|++||.-||.|-+..+..+...
T Consensus 78 g~~~~dvQlig~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~--------G~~v~vvT~neyLA~Rd~e~~~~~~~~ 147 (796)
T PRK12906 78 GLRPFDVQIIGGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALT--------GKGVHVVTVNEYLSSRDATEMGELYRW 147 (796)
T ss_pred CCCCchhHHHHHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHc--------CCCeEEEeccHHHHHhhHHHHHHHHHh
Confidence 3468888887776666776 889999999999999999888764 778999999999999999999999999
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHH-HHHHcC------CCCCCCccEEEeecccccC
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRII-DMVKMG------ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~-~~l~~~------~~~l~~i~~lVvDEad~ll 327 (330)
+|+++.++.++.........+ .|||+.+|...|- ++++.+ ....+.+.+.||||+|.||
T Consensus 148 LGl~vg~i~~~~~~~~r~~~y--~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiL 213 (796)
T PRK12906 148 LGLTVGLNLNSMSPDEKRAAY--NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSIL 213 (796)
T ss_pred cCCeEEEeCCCCCHHHHHHHh--cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchhee
Confidence 999999998877666544433 4799999988763 344322 1124578899999999987
No 110
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.10 E-value=4.9e-10 Score=114.86 Aligned_cols=125 Identities=22% Similarity=0.223 Sum_probs=83.5
Q ss_pred CCHHHHHhhhhhc----C------CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 190 PTPIQAQAVPAAL----S------GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 190 pt~iQ~~~i~~~~----~------g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
+.+.|..++..++ + .+..+++.+||||||++.+..+... +.. ...+++|||+|+++|..|+.+.
T Consensus 239 ~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l-~~~-----~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 239 QRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKA-LEL-----LKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHH-Hhh-----cCCCeEEEEECcHHHHHHHHHH
Confidence 6788988887764 2 3578999999999997765544332 221 2478999999999999999999
Q ss_pred HHHhccCCCceEEEEECCCchHHHHHHHhC-CCeEEEEChHHHHHHHHcCC--CCCCC-ccEEEeeccccc
Q psy17644 260 AKRFGKGYNLSVVCCYGGGSKWDQSKALEL-GAEIVVGTPGRIIDMVKMGA--TKLNR-VTFLVLDEADRM 326 (330)
Q Consensus 260 ~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~~--~~l~~-i~~lVvDEad~l 326 (330)
+..++... ..+..+.......+.. ...|+|+|...|...+.... ....+ --+||+||||+.
T Consensus 313 f~~~~~~~------~~~~~s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs 377 (667)
T TIGR00348 313 FQSLQKDC------AERIESIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRS 377 (667)
T ss_pred HHhhCCCC------CcccCCHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccc
Confidence 99985321 1111223333333333 36899999999986543221 11111 128999999986
No 111
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.05 E-value=3.8e-09 Score=110.35 Aligned_cols=142 Identities=26% Similarity=0.297 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHhhhhhc----CC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 172 FGFDEVLMKALRKCEYTSPTPIQAQAVPAAL----SG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 172 ~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~----~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
|..+......+...-...-|+-|..||..+. ++ .|-++||--|-|||-+.+=++...++ +|.+|.|
T Consensus 577 f~~d~~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~--------~GKQVAv 648 (1139)
T COG1197 577 FPPDTEWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM--------DGKQVAV 648 (1139)
T ss_pred CCCChHHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc--------CCCeEEE
Confidence 3445556666666555568999999999986 34 58999999999999887777766654 5899999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEee
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLD 321 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvD 321 (330)
||||.-||+|.++.++.-..++++++..+..-.+..++... ++. ..||||||..-|. +...++++.+||||
T Consensus 649 LVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~-----kdv~FkdLGLlIID 723 (1139)
T COG1197 649 LVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLS-----KDVKFKDLGLLIID 723 (1139)
T ss_pred EcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhC-----CCcEEecCCeEEEe
Confidence 99999999999999999889999999888776666665443 444 4899999964333 45668999999999
Q ss_pred ccccc
Q psy17644 322 EADRM 326 (330)
Q Consensus 322 Ead~l 326 (330)
|=|+.
T Consensus 724 EEqRF 728 (1139)
T COG1197 724 EEQRF 728 (1139)
T ss_pred chhhc
Confidence 99985
No 112
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.03 E-value=3e-09 Score=109.52 Aligned_cols=65 Identities=23% Similarity=0.232 Sum_probs=52.6
Q ss_pred CCCCHHHHHhhhhhc---C------CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAAL---S------GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~---~------g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
-.+++-|.+.+..+. + ++.+++.|+||+|||++||+|++.+... ++.+|||-+.|+.|-.|+..
T Consensus 24 ~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~-------~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 24 FIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARA-------EKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHH-------cCCeEEEEcCCHHHHHHHHh
Confidence 368899998665554 3 3667888999999999999999877664 35789999999999999965
Q ss_pred H
Q psy17644 259 E 259 (330)
Q Consensus 259 ~ 259 (330)
.
T Consensus 97 k 97 (697)
T PRK11747 97 K 97 (697)
T ss_pred h
Confidence 4
No 113
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.01 E-value=2.4e-09 Score=109.95 Aligned_cols=73 Identities=27% Similarity=0.369 Sum_probs=60.8
Q ss_pred HCCCCCCCHHHHHhhhhh----cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 184 KCEYTSPTPIQAQAVPAA----LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 184 ~~~~~~pt~iQ~~~i~~~----~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
...+..|++.|.+.+..+ .+++.+++.||||+|||++||+|++.+... .+.+++|.++|+.|-.|+++.
T Consensus 10 ~~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~-------~~~~viist~t~~lq~q~~~~ 82 (654)
T COG1199 10 AFPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYARE-------EGKKVIISTRTKALQEQLLEE 82 (654)
T ss_pred hCCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHH-------cCCcEEEECCCHHHHHHHHHh
Confidence 345668999999988654 366679999999999999999999998766 357899999999999999888
Q ss_pred HHHh
Q psy17644 260 AKRF 263 (330)
Q Consensus 260 ~~~l 263 (330)
...+
T Consensus 83 ~~~~ 86 (654)
T COG1199 83 DLPI 86 (654)
T ss_pred hcch
Confidence 6554
No 114
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.97 E-value=3.8e-09 Score=109.26 Aligned_cols=73 Identities=18% Similarity=0.175 Sum_probs=61.2
Q ss_pred CCCCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q psy17644 186 EYTSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK 261 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~ 261 (330)
-|..++|.|.+.+..+. .|.++++.+|||+|||++.|.|+|.++.... ..++++|.+.|..-..|+.++++
T Consensus 7 Py~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~-----~~~kIiy~sRThsQl~q~i~Elk 81 (705)
T TIGR00604 7 PYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP-----EVRKIIYASRTHSQLEQATEELR 81 (705)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc-----ccccEEEEcccchHHHHHHHHHH
Confidence 35566899998886654 7899999999999999999999998876432 34789999999999999999998
Q ss_pred Hh
Q psy17644 262 RF 263 (330)
Q Consensus 262 ~l 263 (330)
++
T Consensus 82 ~~ 83 (705)
T TIGR00604 82 KL 83 (705)
T ss_pred hh
Confidence 85
No 115
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.97 E-value=4e-09 Score=97.27 Aligned_cols=116 Identities=21% Similarity=0.178 Sum_probs=71.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD 282 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 282 (330)
..+.++++..+|.|||+..+.-+ .++...... .....+|||||. .+..||..++.+++.....++..+.|+.....
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~-~~l~~~~~~--~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~ 99 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALI-SYLKNEFPQ--RGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRR 99 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHH-HHHHHCCTT--SS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHH
T ss_pred CCCCEEEEECCCCCchhhhhhhh-hhhhhcccc--ccccceeEeecc-chhhhhhhhhcccccccccccccccccccccc
Confidence 55788899999999996665433 334332210 011248999999 88899999999998654556555555441222
Q ss_pred HHHHHhCCCeEEEEChHHHH--------HHHHcCCCCCCCccEEEeecccccC
Q psy17644 283 QSKALELGAEIVVGTPGRII--------DMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 283 ~~~~l~~~~dIiV~TP~~L~--------~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.........+|+|+|...+. ..+.. -.+.+|||||+|.+-
T Consensus 100 ~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~-----~~~~~vIvDEaH~~k 147 (299)
T PF00176_consen 100 LSKNQLPKYDVVITTYETLRKARKKKDKEDLKQ-----IKWDRVIVDEAHRLK 147 (299)
T ss_dssp TTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHT-----SEEEEEEETTGGGGT
T ss_pred ccccccccceeeecccccccccccccccccccc-----ccceeEEEecccccc
Confidence 22222335799999999998 22222 348999999999983
No 116
>KOG0948|consensus
Probab=98.93 E-value=2.7e-09 Score=105.94 Aligned_cols=123 Identities=23% Similarity=0.252 Sum_probs=100.0
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
...+.|+|..+|-.+-++..+++.|.|.+|||+++-.++...+. ++.+||+-.|-++|.+|-|+++..=.+.
T Consensus 127 PF~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr--------~kQRVIYTSPIKALSNQKYREl~~EF~D 198 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR--------EKQRVIYTSPIKALSNQKYRELLEEFKD 198 (1041)
T ss_pred CcccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH--------hcCeEEeeChhhhhcchhHHHHHHHhcc
Confidence 34688999999999999999999999999999776555544443 3578999999999999999998764443
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
+.+..|..+. ...+..+|.|-+-|..|+-++.--++.|.+||+||+|-|=|
T Consensus 199 ----VGLMTGDVTI-------nP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRD 249 (1041)
T KOG0948|consen 199 ----VGLMTGDVTI-------NPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRD 249 (1041)
T ss_pred ----cceeecceee-------CCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccc
Confidence 3344454443 23467899999999999998888899999999999999865
No 117
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.92 E-value=2.6e-09 Score=109.34 Aligned_cols=127 Identities=18% Similarity=0.141 Sum_probs=98.9
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.|++.|.-.. +.-.+..|+...||.|||+++.+|++...+. |..|-||+++..||.+-++++..+...+|
T Consensus 76 r~ydvQlig~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~--------G~~VhVvT~NdyLA~RD~e~m~pvy~~LG 145 (870)
T CHL00122 76 RHFDVQLIGG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT--------GKGVHIVTVNDYLAKRDQEWMGQIYRFLG 145 (870)
T ss_pred CCCchHhhhh--HhhcCCccccccCCCCchHHHHHHHHHHHhc--------CCceEEEeCCHHHHHHHHHHHHHHHHHcC
Confidence 4777776544 4445667899999999999999999766553 67889999999999999999999999999
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHH-HHHHcC------CCCCCCccEEEeecccccC
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRII-DMVKMG------ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~-~~l~~~------~~~l~~i~~lVvDEad~ll 327 (330)
+.+.++.++.+.......+ .|||+.+|..-|- ++++.+ ....+.+.+.||||+|.||
T Consensus 146 Lsvg~i~~~~~~~err~aY--~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 146 LTVGLIQEGMSSEERKKNY--LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CceeeeCCCCChHHHHHhc--CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 9999988887776544444 4799999987542 333322 1124678999999999987
No 118
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.92 E-value=5.2e-09 Score=107.19 Aligned_cols=128 Identities=18% Similarity=0.139 Sum_probs=100.3
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
..|+++|...--++ .+--|+...||.|||+++.+|++...+. |..|-||+++..||.+-++++..+.+.+
T Consensus 84 ~r~ydVQliGgl~L--h~G~IAEM~TGEGKTL~atlpaylnAL~--------GkgVhVVTvNdYLA~RDae~m~~vy~~L 153 (939)
T PRK12902 84 MRHFDVQLIGGMVL--HEGQIAEMKTGEGKTLVATLPSYLNALT--------GKGVHVVTVNDYLARRDAEWMGQVHRFL 153 (939)
T ss_pred CCcchhHHHhhhhh--cCCceeeecCCCChhHHHHHHHHHHhhc--------CCCeEEEeCCHHHHHhHHHHHHHHHHHh
Confidence 35666665544444 4556889999999999999999887664 6778999999999999999999999999
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-----HHHHHcC--CCCCCCccEEEeecccccC
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-----IDMVKMG--ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-----~~~l~~~--~~~l~~i~~lVvDEad~ll 327 (330)
|+.+.++.++........ .-.|||+.||+..| .+.+... ....+.+.+.||||+|.||
T Consensus 154 GLtvg~i~~~~~~~err~--aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 154 GLSVGLIQQDMSPEERKK--NYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred CCeEEEECCCCChHHHHH--hcCCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 999999888776654433 33689999999987 4444321 2235788999999999987
No 119
>KOG0949|consensus
Probab=98.92 E-value=2.5e-09 Score=108.78 Aligned_cols=132 Identities=16% Similarity=0.206 Sum_probs=97.5
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc-CC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK-GY 267 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~-~~ 267 (330)
.|..||...+..+-.+..++++|||.+|||.+--- ++..++.. .....||+++||++|+.|+...+..... .+
T Consensus 511 ~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLRe-----sD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t 584 (1330)
T KOG0949|consen 511 CPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRE-----SDSDVVIYVAPTKALVNQVSANVYARFDTKT 584 (1330)
T ss_pred CCcHHHHHHhhhhhcccceEEEeeccCCceeccHH-HHHHHHhh-----cCCCEEEEecchHHHhhhhhHHHHHhhccCc
Confidence 58899999999999999999999999999965322 33333332 3568899999999999999988776542 22
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHc---CCCCCCCccEEEeecccccCc
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM---GATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~---~~~~l~~i~~lVvDEad~lld 328 (330)
-.+.+.+.|..+...+.. .-+|+|+|+-|..|..++.. ......+++++|+||+|.+-.
T Consensus 585 ~~rg~sl~g~ltqEYsin--p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~ 646 (1330)
T KOG0949|consen 585 FLRGVSLLGDLTQEYSIN--PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGN 646 (1330)
T ss_pred cccchhhHhhhhHHhcCC--chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccc
Confidence 233344444333333222 22599999999999998876 344578999999999999863
No 120
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=98.90 E-value=1.1e-08 Score=109.63 Aligned_cols=120 Identities=18% Similarity=0.206 Sum_probs=76.7
Q ss_pred HhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH-hccCCCceEEEE
Q psy17644 196 QAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR-FGKGYNLSVVCC 274 (330)
Q Consensus 196 ~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~-l~~~~~~~~~~~ 274 (330)
+++..+.+++-+|++|+||||||. .+|.+..-... +...++++.-|.|-.|..+...+.. ++...|..+...
T Consensus 74 ~Il~~l~~~~vvii~g~TGSGKTT--qlPq~lle~~~-----~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~ 146 (1283)
T TIGR01967 74 DIAEAIAENQVVIIAGETGSGKTT--QLPKICLELGR-----GSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYK 146 (1283)
T ss_pred HHHHHHHhCceEEEeCCCCCCcHH--HHHHHHHHcCC-----CCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeE
Confidence 455555566778888999999996 45655332211 1123555566888777777666544 322233333222
Q ss_pred ECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccc-ccCcC
Q psy17644 275 YGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEAD-RMFDM 329 (330)
Q Consensus 275 ~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad-~lld~ 329 (330)
+..... ...+..|+|+|+|.|+..+.... .++++.+||||||| +++++
T Consensus 147 vR~~~~------~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~ 195 (1283)
T TIGR01967 147 VRFHDQ------VSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNI 195 (1283)
T ss_pred EcCCcc------cCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccc
Confidence 221111 23457899999999999886543 48999999999999 67765
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.87 E-value=7.2e-09 Score=104.54 Aligned_cols=123 Identities=21% Similarity=0.202 Sum_probs=87.8
Q ss_pred CCCCHHHHHhhhhhc----CC-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAAL----SG-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
..|+.+|..||..+. +| +-+++++.||+|||.+.. .++.++++.. .-.+||+|+-++.|+.|.+..+..
T Consensus 164 i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAi-aii~rL~r~~-----~~KRVLFLaDR~~Lv~QA~~af~~ 237 (875)
T COG4096 164 IGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAI-AIIDRLIKSG-----WVKRVLFLADRNALVDQAYGAFED 237 (875)
T ss_pred ccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHH-HHHHHHHhcc-----hhheeeEEechHHHHHHHHHHHHH
Confidence 357899999998765 44 348888999999995543 3444444432 357899999999999999999888
Q ss_pred hccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC-----CCCCCCccEEEeecccc
Q psy17644 263 FGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG-----ATKLNRVTFLVLDEADR 325 (330)
Q Consensus 263 l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~-----~~~l~~i~~lVvDEad~ 325 (330)
+... +..+..+.+-... ..++|.|+|...+...+... .+....++++|||||||
T Consensus 238 ~~P~-~~~~n~i~~~~~~--------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR 296 (875)
T COG4096 238 FLPF-GTKMNKIEDKKGD--------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR 296 (875)
T ss_pred hCCC-ccceeeeecccCC--------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh
Confidence 7654 2233333321111 14799999999999988654 22244589999999997
No 122
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=98.84 E-value=3.3e-08 Score=104.51 Aligned_cols=129 Identities=21% Similarity=0.197 Sum_probs=87.6
Q ss_pred CCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 189 SPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.+.++|.+++..++ +|.+.|++-.+|.|||+..+ .++.++...+ +....+|||||. .++.||..++.+|+
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~----~~~gp~LIVvP~-SlL~nW~~Ei~kw~ 242 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYR----GITGPHMVVAPK-STLGNWMNEIRRFC 242 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhc----CCCCCEEEEeCh-HHHHHHHHHHHHHC
Confidence 57899999998875 68889999999999997543 3334443321 123457999997 66799999999997
Q ss_pred cCCCceEEEEECCCchHHHHH--H-HhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSK--A-LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~--~-l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.. ++++.++|......... . .....+|||+|+..+..... .+.--.+.+|||||||+|-
T Consensus 243 p~--l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIK 304 (1033)
T PLN03142 243 PV--LRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIK 304 (1033)
T ss_pred CC--CceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccC
Confidence 53 45555555433222211 1 12357999999998865432 1222357899999999974
No 123
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.84 E-value=1.3e-08 Score=83.20 Aligned_cols=105 Identities=17% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD 282 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 282 (330)
.|+-.++-..+|+|||.-.+.-++...++ .+.++|||.|||.++..+.+.++.. ++++....-+.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~-------~~~rvLvL~PTRvva~em~~aL~~~----~~~~~t~~~~~---- 67 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIK-------RRLRVLVLAPTRVVAEEMYEALKGL----PVRFHTNARMR---- 67 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHH-------TT--EEEEESSHHHHHHHHHHTTTS----SEEEESTTSS-----
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHH-------ccCeEEEecccHHHHHHHHHHHhcC----CcccCceeeec----
Confidence 34556777899999997777667776666 3678999999999999988887654 33333211111
Q ss_pred HHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 283 QSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 283 ~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
....+.-|-|.|...+..++.+ ...+.+.+++|+||||.+
T Consensus 68 ---~~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~ 107 (148)
T PF07652_consen 68 ---THFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFT 107 (148)
T ss_dssp ------SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--
T ss_pred ---cccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccC
Confidence 1123456778899988887765 555789999999999974
No 124
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=98.82 E-value=3.8e-08 Score=90.34 Aligned_cols=115 Identities=23% Similarity=0.358 Sum_probs=92.2
Q ss_pred CCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.++||.|+.+-..+. +.+++++.|-||+|||-. +.+.+..++. +|.++.|.+|....|..++..++.-
T Consensus 96 G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEM-if~~i~~al~-------~G~~vciASPRvDVclEl~~Rlk~a 167 (441)
T COG4098 96 GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEM-IFQGIEQALN-------QGGRVCIASPRVDVCLELYPRLKQA 167 (441)
T ss_pred cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhh-hHHHHHHHHh-------cCCeEEEecCcccchHHHHHHHHHh
Confidence 368899988776654 678999999999999943 3346666666 5889999999999999999999876
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
.. +..+.++||+.....+ +.+||||--.|+.+.. .++++||||+|..
T Consensus 168 F~--~~~I~~Lyg~S~~~fr-------~plvVaTtHQLlrFk~-------aFD~liIDEVDAF 214 (441)
T COG4098 168 FS--NCDIDLLYGDSDSYFR-------APLVVATTHQLLRFKQ-------AFDLLIIDEVDAF 214 (441)
T ss_pred hc--cCCeeeEecCCchhcc-------ccEEEEehHHHHHHHh-------hccEEEEeccccc
Confidence 44 4677889998766543 6899999888887764 6789999999974
No 125
>KOG1002|consensus
Probab=98.80 E-value=7.7e-08 Score=91.98 Aligned_cols=127 Identities=26% Similarity=0.233 Sum_probs=87.8
Q ss_pred CCCHHHHHhhhhhcCC-----CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 189 SPTPIQAQAVPAALSG-----RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g-----~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.+-|+|++.+-.+... ...|+.-..|.|||.-.+.-+|. .. .+...|||+|+.+| .||.+++.++
T Consensus 184 ~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLlla----e~-----~ra~tLVvaP~VAl-mQW~nEI~~~ 253 (791)
T KOG1002|consen 184 PLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLA----EV-----DRAPTLVVAPTVAL-MQWKNEIERH 253 (791)
T ss_pred cchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHh----cc-----ccCCeeEEccHHHH-HHHHHHHHHh
Confidence 3457888877766532 34567778999999654433333 21 23448999999988 7999999998
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC-------------CCCC--ccEEEeecccccCc
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT-------------KLNR--VTFLVLDEADRMFD 328 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-------------~l~~--i~~lVvDEad~lld 328 (330)
.. |...+.+|.|.......+.+.+ .|++++|...+-...++... -|.+ +..+|+||||.+-+
T Consensus 254 T~--gslkv~~YhG~~R~~nikel~~-YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~ 330 (791)
T KOG1002|consen 254 TS--GSLKVYIYHGAKRDKNIKELMN-YDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKD 330 (791)
T ss_pred cc--CceEEEEEecccccCCHHHhhc-CcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccccc
Confidence 76 4444556666666555666655 89999999999887764211 1344 45789999998754
No 126
>KOG0950|consensus
Probab=98.78 E-value=1.3e-08 Score=103.76 Aligned_cols=146 Identities=16% Similarity=0.159 Sum_probs=115.4
Q ss_pred CCHHHHHH-HHHCCCCCCCHHHHHhh--hhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q psy17644 174 FDEVLMKA-LRKCEYTSPTPIQAQAV--PAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 174 l~~~l~~~-l~~~~~~~pt~iQ~~~i--~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr 250 (330)
+++.+... ....|..++..+|..++ |.++.++++|+.+||+.|||++.-+-++..++..+ ..++.++|..
T Consensus 207 ~~~k~~~~~~~~kgi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~r-------r~~llilp~v 279 (1008)
T KOG0950|consen 207 LPTKVSHLYAKDKGILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRR-------RNVLLILPYV 279 (1008)
T ss_pred CchHHHHHHHHhhhHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHh-------hceeEeccee
Confidence 34444433 45568888999999987 56779999999999999999999999999988754 4689999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC--CCCCCCccEEEeecccccCc
Q psy17644 251 ELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG--ATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 251 ~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~--~~~l~~i~~lVvDEad~lld 328 (330)
..+..-...+..|+...|+.+-+.+|+....... +.-+|.|||-++-..+++.- ...+..+.+|||||.|.+.|
T Consensus 280 siv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~----k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d 355 (1008)
T KOG0950|consen 280 SIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRR----KRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGD 355 (1008)
T ss_pred ehhHHHHhhhhhhccccCCcchhhcccCCCCCcc----cceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeec
Confidence 9988888889999999999887777655543322 23589999999887777542 33577899999999999987
Q ss_pred CC
Q psy17644 329 MG 330 (330)
Q Consensus 329 ~G 330 (330)
-|
T Consensus 356 ~~ 357 (1008)
T KOG0950|consen 356 KG 357 (1008)
T ss_pred cc
Confidence 54
No 127
>KOG0385|consensus
Probab=98.78 E-value=4.1e-08 Score=98.01 Aligned_cols=130 Identities=25% Similarity=0.260 Sum_probs=88.6
Q ss_pred CCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..++++|.+.+..+. +|-+.|+.-.+|-|||+- .+.+|.++...+. ..||. ||+||...| ..|.+++++|
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQ-tIs~l~yl~~~~~---~~GPf-LVi~P~StL-~NW~~Ef~rf 239 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQ-TISLLGYLKGRKG---IPGPF-LVIAPKSTL-DNWMNEFKRF 239 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHH-HHHHHHHHHHhcC---CCCCe-EEEeeHhhH-HHHHHHHHHh
Confidence 357889999888775 788999999999999943 3334444433211 24564 899998777 6789999999
Q ss_pred ccCCCceEEEEECCCchHHH--HHHHh-CCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQ--SKALE-LGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~--~~~l~-~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+.. +.+++++|....+.. ...+. ...+|+|+|.+..+.- +..+.--.++|+||||||||-
T Consensus 240 ~P~--l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiK 302 (971)
T KOG0385|consen 240 TPS--LNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIK 302 (971)
T ss_pred CCC--cceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhc
Confidence 874 667777775532221 11122 2579999999877653 112223467999999999984
No 128
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=98.74 E-value=4.7e-08 Score=99.61 Aligned_cols=120 Identities=24% Similarity=0.310 Sum_probs=94.1
Q ss_pred CCCCHHHHHhhhhhcCC----CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAALSG----RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g----~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..+++-|..++..+... +-.++.+.||||||-+|+ .++..++. .|..||||+|-..|-.|+...++..
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl-~~i~~~L~-------~GkqvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYL-EAIAKVLA-------QGKQVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHH-HHHHHHHH-------cCCEEEEEeccccchHHHHHHHHHH
Confidence 35678899999988754 677888999999998886 45556665 4789999999999999999998876
Q ss_pred ccCCCceEEEEECCCchHHH----HHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQ----SKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~----~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
. +.++..+++|.+..+. .+.....+.|||||-..|+ ..|+++.++||||=|-
T Consensus 269 F---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD 324 (730)
T COG1198 269 F---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHD 324 (730)
T ss_pred h---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEecccc
Confidence 4 4677888887775443 3334456899999976655 4578999999999884
No 129
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.71 E-value=7.3e-08 Score=101.43 Aligned_cols=130 Identities=18% Similarity=0.086 Sum_probs=81.7
Q ss_pred CCCCHHHHHhhhhhcC--CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 188 TSPTPIQAQAVPAALS--GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~--g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
..|.|+|..++..++. ...+++.-.+|.|||+-..+.+-..+... ...++|||||+ .|+.||..++.+..
T Consensus 151 ~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g------~~~rvLIVvP~-sL~~QW~~El~~kF- 222 (956)
T PRK04914 151 ASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG------RAERVLILVPE-TLQHQWLVEMLRRF- 222 (956)
T ss_pred CCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC------CCCcEEEEcCH-HHHHHHHHHHHHHh-
Confidence 3588999998877653 24688889999999977765444333321 23579999998 89999999986542
Q ss_pred CCCceEEEEECCCchHHHHH--HHhCCCeEEEEChHHHHHHHH-cCCCCCCCccEEEeecccccC
Q psy17644 266 GYNLSVVCCYGGGSKWDQSK--ALELGAEIVVGTPGRIIDMVK-MGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~--~l~~~~dIiV~TP~~L~~~l~-~~~~~l~~i~~lVvDEad~ll 327 (330)
++.+..+-++........ ..-...+++|||...+...-. .....-..+++|||||||++-
T Consensus 223 --~l~~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk 285 (956)
T PRK04914 223 --NLRFSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLV 285 (956)
T ss_pred --CCCeEEEcCcchhhhcccccCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhc
Confidence 344433322221110000 001136899999887764111 011112468999999999984
No 130
>KOG0951|consensus
Probab=98.68 E-value=5.6e-08 Score=101.30 Aligned_cols=123 Identities=24% Similarity=0.341 Sum_probs=94.9
Q ss_pred CCCCHHHHHhhhhhcCCC-cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH-Hhcc
Q psy17644 188 TSPTPIQAQAVPAALSGR-DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK-RFGK 265 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~-d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~-~l~~ 265 (330)
....|+|.++++.+.+.+ ++++++|+|||||++.-+++++ +.+..++++++|..+.+..++..+. +|..
T Consensus 1142 ~~~n~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~---------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~ 1212 (1674)
T KOG0951|consen 1142 QDFNPIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR---------PDTIGRAVYIAPLEEIADEQYRDWEKKFSK 1212 (1674)
T ss_pred cccCCceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC---------CccceEEEEecchHHHHHHHHHHHHHhhcc
Confidence 345899999999998665 5777799999999998887775 1356899999999999988888765 5666
Q ss_pred CCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
..|..++.+.|..+.. .+.+. ..+|||+||.++-.+ + ..+.+++.|.||+|.+.
T Consensus 1213 ~~G~~~~~l~ge~s~~--lkl~~-~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~ig 1266 (1674)
T KOG0951|consen 1213 LLGLRIVKLTGETSLD--LKLLQ-KGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIG 1266 (1674)
T ss_pred ccCceEEecCCccccc--hHHhh-hcceEEechhHHHHH-h----hhhhcceEeeehhhhhc
Confidence 6677766666554432 23333 359999999999766 1 67889999999999886
No 131
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.66 E-value=1.6e-07 Score=96.24 Aligned_cols=128 Identities=19% Similarity=0.183 Sum_probs=100.7
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
..|+++|.-..-++..| -|+...||-|||++..+|+..+.+. |..|-||+...-||..=..++..+...+
T Consensus 77 ~r~ydVQliGglvLh~G--~IAEMkTGEGKTLvAtLpayLnAL~--------GkgVhVVTvNdYLA~RDae~mg~vy~fL 146 (925)
T PRK12903 77 KRPYDVQIIGGIILDLG--SVAEMKTGEGKTITSIAPVYLNALT--------GKGVIVSTVNEYLAERDAEEMGKVFNFL 146 (925)
T ss_pred CCcCchHHHHHHHHhcC--CeeeecCCCCccHHHHHHHHHHHhc--------CCceEEEecchhhhhhhHHHHHHHHHHh
Confidence 46788887766666565 4788999999999999999876654 6678888999999999999999999999
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcCC------CCCCCccEEEeecccccC
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMGA------TKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~------~~l~~i~~lVvDEad~ll 327 (330)
|+.+.++..+.........+ .|||+.+|..-| +++|+.+- .-.+.+.|.||||+|.||
T Consensus 147 GLsvG~i~~~~~~~~rr~aY--~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 147 GLSVGINKANMDPNLKREAY--ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred CCceeeeCCCCChHHHHHhc--cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 99999988877766544444 489999998775 33444321 124678899999999987
No 132
>COG4889 Predicted helicase [General function prediction only]
Probab=98.65 E-value=6.1e-08 Score=97.98 Aligned_cols=147 Identities=20% Similarity=0.206 Sum_probs=97.5
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC-----CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCC
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG-----RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGP 241 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g-----~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~ 241 (330)
-.|+.+.. .++..++.-+.-.+|+|+|++++...+.| |.-++. ..|+|||++.|-.+ ..+ ...
T Consensus 140 IDW~~f~p-~e~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIM-AcGTGKTfTsLkis-Eal---------a~~ 207 (1518)
T COG4889 140 IDWDIFDP-TELQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIM-ACGTGKTFTSLKIS-EAL---------AAA 207 (1518)
T ss_pred CChhhcCc-cccccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEE-ecCCCccchHHHHH-HHH---------hhh
Confidence 34666554 45566666667789999999999998854 334443 47999997765322 222 236
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCc--------------------hHH-----HHHHHhCCCeEEEE
Q psy17644 242 MGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGS--------------------KWD-----QSKALELGAEIVVG 296 (330)
Q Consensus 242 ~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~--------------------~~~-----~~~~l~~~~dIiV~ 296 (330)
++|+|+|+..|..|..+++..-. .+.++...+.+... ... ..+....+--||++
T Consensus 208 ~iL~LvPSIsLLsQTlrew~~~~-~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFs 286 (1518)
T COG4889 208 RILFLVPSISLLSQTLREWTAQK-ELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFS 286 (1518)
T ss_pred heEeecchHHHHHHHHHHHhhcc-CccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEE
Confidence 78999999999999988876532 22333333322110 000 01112235679999
Q ss_pred ChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 297 TPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 297 TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
|...+..+-......+..++++|.|||||-
T Consensus 287 TYQSl~~i~eAQe~G~~~fDliicDEAHRT 316 (1518)
T COG4889 287 TYQSLPRIKEAQEAGLDEFDLIICDEAHRT 316 (1518)
T ss_pred cccchHHHHHHHHcCCCCccEEEecchhcc
Confidence 999998887766667889999999999984
No 133
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=98.59 E-value=2e-08 Score=96.92 Aligned_cols=89 Identities=17% Similarity=0.234 Sum_probs=62.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCC-------------C-------------------ceEEEEECCCchHHHHHH
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGY-------------N-------------------LSVVCCYGGGSKWDQSKA 286 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~-------------~-------------------~~~~~~~gg~~~~~~~~~ 286 (330)
..|+||||+|+|..|.++++.+.+++... + .....+++|+....+.-.
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 35999999999999999999998876531 1 011112233332222111
Q ss_pred Hh------------CCCeEEEEChHHHHHHHHc------CCCCCCCccEEEeecccccC
Q psy17644 287 LE------------LGAEIVVGTPGRIIDMVKM------GATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 287 l~------------~~~dIiV~TP~~L~~~l~~------~~~~l~~i~~lVvDEad~ll 327 (330)
++ .++|||||||.+|...+.. ....|++|+++|||.||.|+
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~ 174 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLL 174 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHH
Confidence 11 1689999999999999974 23459999999999999886
No 134
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.58 E-value=3.4e-07 Score=80.97 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=50.7
Q ss_pred CCHHHHHhhhhhcCCCc-EEEEcCCCChhHHHHHHHHHHHHHhcC-CCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 190 PTPIQAQAVPAALSGRD-IIGVAKTGSGKTGAFIWPMLVHIMDQK-ELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d-~i~~a~TGsGKT~a~llp~l~~i~~~~-~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
+.+-|..++..+++... .++.||.|+|||. .+..++.++.... ......+.++||++||...+..+...+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~-~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTT-TLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHH-HHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHH-HHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 56889999999999998 8889999999993 3334444442110 01123578999999999999999999888
No 135
>KOG0387|consensus
Probab=98.49 E-value=3.8e-07 Score=91.58 Aligned_cols=136 Identities=21% Similarity=0.142 Sum_probs=89.7
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHH--HHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 172 FGFDEVLMKALRKCEYTSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTG--AFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 172 ~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~--a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
+.++..|.. .+.++|+..+..+. ++.-.|+.-.+|-|||. +..|.+|.|--+ -...+||
T Consensus 196 ~~vPg~I~~--------~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k-------~~~paLI 260 (923)
T KOG0387|consen 196 FKVPGFIWS--------KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK-------LTKPALI 260 (923)
T ss_pred ccccHHHHH--------HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc-------ccCceEE
Confidence 455655543 35689999988875 56678888899999992 233444444211 1256899
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCch---------HHHHHHH----hCCCeEEEEChHHHHHHHHcCCCCC
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK---------WDQSKAL----ELGAEIVVGTPGRIIDMVKMGATKL 312 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~---------~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~l 312 (330)
|||. .++.||..++..|.. .+++..++|..+. ......+ .....|+|+|...+.-. ...+.-
T Consensus 261 VCP~-Tii~qW~~E~~~w~p--~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~ 335 (923)
T KOG0387|consen 261 VCPA-TIIHQWMKEFQTWWP--PFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLG 335 (923)
T ss_pred EccH-HHHHHHHHHHHHhCc--ceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--Cccccc
Confidence 9998 577999999999965 4677777765542 1111111 12467999998777532 112223
Q ss_pred CCccEEEeecccccC
Q psy17644 313 NRVTFLVLDEADRMF 327 (330)
Q Consensus 313 ~~i~~lVvDEad~ll 327 (330)
..+.|+|+||.|+|=
T Consensus 336 ~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 336 ILWDYVILDEGHRIR 350 (923)
T ss_pred ccccEEEecCccccc
Confidence 467899999999973
No 136
>KOG0391|consensus
Probab=98.48 E-value=6.5e-07 Score=92.85 Aligned_cols=130 Identities=22% Similarity=0.231 Sum_probs=91.9
Q ss_pred CCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 190 PTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 190 pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
++.+|+..+.++. +.-|.|+.-..|-|||+ -.|.+|.|+.+.. ++..--||||||-.+ ..|.-++++||.
T Consensus 616 LReYQkiGLdWLatLYeknlNGILADEmGLGKTI-QtISllAhLACee----gnWGPHLIVVpTsvi-LnWEMElKRwcP 689 (1958)
T KOG0391|consen 616 LREYQKIGLDWLATLYEKNLNGILADEMGLGKTI-QTISLLAHLACEE----GNWGPHLIVVPTSVI-LNWEMELKRWCP 689 (1958)
T ss_pred HHHHHHhhHHHHHHHHHhcccceehhhhcccchh-HHHHHHHHHHhcc----cCCCCceEEeechhh-hhhhHHHhhhCC
Confidence 4468888887764 34467888899999994 4566777877653 355556999999655 678899999987
Q ss_pred CCCceEEEEECCCchHHH-H--HHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 266 GYNLSVVCCYGGGSKWDQ-S--KALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~-~--~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
++++...||....... + ....+..||.|+++..+..-+. .+.-.++.||||||||++-.|
T Consensus 690 --glKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~--AFkrkrWqyLvLDEaqnIKnf 752 (1958)
T KOG0391|consen 690 --GLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLT--AFKRKRWQYLVLDEAQNIKNF 752 (1958)
T ss_pred --cceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHH--HHHhhccceeehhhhhhhcch
Confidence 5777888885432211 1 1112347999999988776554 233468899999999998654
No 137
>KOG1132|consensus
Probab=98.35 E-value=2.8e-06 Score=86.51 Aligned_cols=138 Identities=21% Similarity=0.261 Sum_probs=88.0
Q ss_pred CCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHH---HHHHHHHHhcCCC------C-------C----------
Q psy17644 188 TSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFI---WPMLVHIMDQKEL------E-------P---------- 237 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~l---lp~l~~i~~~~~~------~-------~---------- 237 (330)
..|+|.|...+..++ ...+.++..|||+|||++.| |+..++....... . .
T Consensus 20 ~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 20 FQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred CCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 357888877665544 67889999999999997655 4444444311100 0 0
Q ss_pred --------CCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEC---------------------------------
Q psy17644 238 --------GDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYG--------------------------------- 276 (330)
Q Consensus 238 --------~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~g--------------------------------- 276 (330)
...|++.|-.-|..-..|+.+++++.+-. .+.+++-+
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~--vkmtVLgSReq~Cinpev~k~~~~~~~~~~C~k~~~~~~C~ 177 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR--VKMTVLGSREQLCINPEVKKLEGNALQNHVCKKLVKSRSCH 177 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC--CceEEeecchhhccCHHHhhhhcchhhhhHHHhhccccccc
Confidence 01378788888888889999999876421 11111100
Q ss_pred -------------------------------CCchHHHHHHHhCCCeEEEEChHHHHHHHHcCC--CCCCCccEEEeecc
Q psy17644 277 -------------------------------GGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA--TKLNRVTFLVLDEA 323 (330)
Q Consensus 277 -------------------------------g~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~--~~l~~i~~lVvDEa 323 (330)
+.+.....+.+...++||+|-...|++-.-++. .+|.+ .+||||||
T Consensus 178 f~~~~~~~sl~~~l~~~i~DIEDLVk~Gk~~~~CPYfaSR~l~edAdIIF~PYnYLiDp~iR~~~~v~Lkn-sIVIfDEA 256 (945)
T KOG1132|consen 178 FYKIVEEKSLQPRLHDEIFDIEDLVKIGKKSRGCPYFASRELKEDADIIFCPYNYLIDPKIRRSHKVDLKN-SIVIFDEA 256 (945)
T ss_pred ccccccccccccccCCCcccHHHHHHhCccCcCCcchhhhhhcccCcEEEechhhhcCHhhhccccccccc-cEEEEecc
Confidence 111122234444578999999999999765554 44543 78999999
Q ss_pred cccCc
Q psy17644 324 DRMFD 328 (330)
Q Consensus 324 d~lld 328 (330)
|.|.+
T Consensus 257 HNiEd 261 (945)
T KOG1132|consen 257 HNIED 261 (945)
T ss_pred ccHHH
Confidence 99865
No 138
>KOG0389|consensus
Probab=98.32 E-value=1.2e-06 Score=87.93 Aligned_cols=131 Identities=18% Similarity=0.225 Sum_probs=86.2
Q ss_pred CCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 190 PTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 190 pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
+-++|.-.+.++. .+-+.|+.-..|-||| +-+++.|..+.... .+|| -|||||.-.| ..|.+++.+||.
T Consensus 400 LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKT-iQvIaFlayLkq~g----~~gp-HLVVvPsSTl-eNWlrEf~kwCP 472 (941)
T KOG0389|consen 400 LKDYQLVGVNWLLLLYKKKLNGILADEMGLGKT-IQVIAFLAYLKQIG----NPGP-HLVVVPSSTL-ENWLREFAKWCP 472 (941)
T ss_pred ccchhhhhHHHHHHHHHccccceehhhccCcch-hHHHHHHHHHHHcC----CCCC-cEEEecchhH-HHHHHHHHHhCC
Confidence 6688888887764 5557788899999999 34444444444332 1344 5999999766 778889999987
Q ss_pred CCCceEEEEECCCchHHHHHH-HhC---CCeEEEEChHHHHHHH-HcCCCCCCCccEEEeecccccCcC
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKA-LEL---GAEIVVGTPGRIIDMV-KMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~-l~~---~~dIiV~TP~~L~~~l-~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
. +++-..||....+...+. +.. ..+|||+|+.....-- .+..+.-.++.++|+||+|.|-++
T Consensus 473 s--l~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~ 539 (941)
T KOG0389|consen 473 S--LKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNR 539 (941)
T ss_pred c--eEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhcc
Confidence 4 566666776544333222 222 5899999976543211 111222467899999999998655
No 139
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=98.32 E-value=1.2e-06 Score=91.12 Aligned_cols=134 Identities=20% Similarity=0.170 Sum_probs=86.1
Q ss_pred CCHHHHHhhhhhcC---CC-cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 190 PTPIQAQAVPAALS---GR-DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 190 pt~iQ~~~i~~~~~---g~-d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
+.+.|..++..+.+ .. .+++.||||.|||.+.+++++..+... ....++++++.|+|.++.++++.++.+..
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~----~~~~~r~i~vlP~~t~ie~~~~r~~~~~~ 271 (733)
T COG1203 196 GYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK----IKLKSRVIYVLPFRTIIEDMYRRAKEIFG 271 (733)
T ss_pred hhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc----ccccceEEEEccHHHHHHHHHHHHHhhhc
Confidence 47888888887763 23 677889999999999999988776552 12579999999999999999999998765
Q ss_pred CCCceEEEEECCCchHHHHHHH---------------hCCCeEEEEChHHHHHHHHcCCC-C-C--CCccEEEeeccccc
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKAL---------------ELGAEIVVGTPGRIIDMVKMGAT-K-L--NRVTFLVLDEADRM 326 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~l---------------~~~~dIiV~TP~~L~~~l~~~~~-~-l--~~i~~lVvDEad~l 326 (330)
..+.......|.... ...... .....++++||..+......... . + =...++||||+|.+
T Consensus 272 ~~~~~~~~~h~~~~~-~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~ 350 (733)
T COG1203 272 LFSVIGKSLHSSSKE-PLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLY 350 (733)
T ss_pred ccccccccccccccc-hhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhh
Confidence 443332212222211 111000 01245566666665553222111 1 1 12368999999987
Q ss_pred Cc
Q psy17644 327 FD 328 (330)
Q Consensus 327 ld 328 (330)
-+
T Consensus 351 ~~ 352 (733)
T COG1203 351 AD 352 (733)
T ss_pred cc
Confidence 54
No 140
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=98.28 E-value=1.2e-06 Score=91.20 Aligned_cols=124 Identities=18% Similarity=0.154 Sum_probs=92.8
Q ss_pred HHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q psy17644 194 QAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVC 273 (330)
Q Consensus 194 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~ 273 (330)
-.|++-.+.-++--|+...||-|||++..||+....+. |..|-||+..--||..=.+++..+...+|+++.|
T Consensus 141 dVQLiGgivLh~G~IAEM~TGEGKTLvatlp~yLnAL~--------G~gVHvVTvNDYLA~RDaewm~p~y~flGLtVg~ 212 (1025)
T PRK12900 141 DVQLIGGIVLHSGKISEMATGEGKTLVSTLPTFLNALT--------GRGVHVVTVNDYLAQRDKEWMNPVFEFHGLSVGV 212 (1025)
T ss_pred chHHhhhHHhhcCCccccCCCCCcchHhHHHHHHHHHc--------CCCcEEEeechHhhhhhHHHHHHHHHHhCCeeee
Confidence 33344444444556889999999999999999888775 5556778888899999999999999999999999
Q ss_pred EECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC------CCCCCCccEEEeecccccC
Q psy17644 274 CYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG------ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 274 ~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~------~~~l~~i~~lVvDEad~ll 327 (330)
+..+......... -.|||..||..-| +++|+.+ ..-.+.+.|.||||+|.+|
T Consensus 213 i~~~~~~~~Rr~a--Y~~DItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDSvL 271 (1025)
T PRK12900 213 ILNTMRPEERREQ--YLCDITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDSVL 271 (1025)
T ss_pred eCCCCCHHHHHHh--CCCcceecCCCccccccchhccccchhhhhccCCceEEEechhhhh
Confidence 8776665554333 3589999998765 3333322 1124678899999999987
No 141
>KOG1123|consensus
Probab=98.28 E-value=7.5e-07 Score=85.51 Aligned_cols=123 Identities=20% Similarity=0.159 Sum_probs=86.8
Q ss_pred CCCCHHHHHhhhhhc-CC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 188 TSPTPIQAQAVPAAL-SG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~-~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
..++|+|..++..++ +| |..|++.|.|+|||++-+.++..- ...+||||.+--.+.||...++.|+
T Consensus 301 t~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti-----------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 301 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI-----------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred cccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee-----------cccEEEEecCccCHHHHHHHHHhhc
Confidence 468899999999998 44 689999999999997765544321 3568999999999999999999997
Q ss_pred cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC--------CCCCCCccEEEeeccccc
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG--------ATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~--------~~~l~~i~~lVvDEad~l 326 (330)
.-..-.++....... .....++.|+|+|...+..--++. .+.-..+.++|+||+|-+
T Consensus 370 ti~d~~i~rFTsd~K-----e~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvv 434 (776)
T KOG1123|consen 370 TIQDDQICRFTSDAK-----ERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVV 434 (776)
T ss_pred ccCccceEEeecccc-----ccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccc
Confidence 654444433333221 113457899999987653211110 112356889999999964
No 142
>KOG4439|consensus
Probab=98.27 E-value=1.3e-06 Score=86.90 Aligned_cols=136 Identities=25% Similarity=0.216 Sum_probs=84.3
Q ss_pred CCHHHHHhhhhhc-----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC--CCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 190 PTPIQAQAVPAAL-----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE--PGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 190 pt~iQ~~~i~~~~-----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~--~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
+-|+|..++.++. .+.-.|+....|-|||++.+--++..-...+... .....++|||||- .|+.||..++.+
T Consensus 326 LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~Ev~~ 404 (901)
T KOG4439|consen 326 LMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAEVAR 404 (901)
T ss_pred cchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHHHHH
Confidence 5689999998887 3456777788999999765444443322221111 1112258999997 577899999877
Q ss_pred hccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHH----HHHcC--CCCCC--CccEEEeecccccC
Q psy17644 263 FGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIID----MVKMG--ATKLN--RVTFLVLDEADRMF 327 (330)
Q Consensus 263 l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~----~l~~~--~~~l~--~i~~lVvDEad~ll 327 (330)
-...--+++...+|.+...-..+.++. +||||+|+.-+.. -+... ...|. .+..||+||||.+=
T Consensus 405 rl~~n~LsV~~~HG~n~r~i~~~~L~~-YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 405 RLEQNALSVYLYHGPNKREISAKELRK-YDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred HHhhcceEEEEecCCccccCCHHHHhh-cceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 655545565555554433333444544 8999999865544 11111 11122 34689999999874
No 143
>KOG0952|consensus
Probab=98.24 E-value=5.3e-07 Score=92.92 Aligned_cols=132 Identities=23% Similarity=0.224 Sum_probs=102.5
Q ss_pred CCCCHHHHHhhhhhcC-CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 188 TSPTPIQAQAVPAALS-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~-g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
....|+|.+.+-.+.. ..+.++.+|||+|||++|-+.+...+.. ..+.+|++++|-..|+....+.+.+....
T Consensus 926 ~~fn~~q~~if~~~y~td~~~~~g~ptgsgkt~~ae~a~~~~~~~------~p~~kvvyIap~kalvker~~Dw~~r~~~ 999 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLYHTDLNFLLGAPTGSGKTVVAELAIFRALSY------YPGSKVVYIAPDKALVKERSDDWSKRDEL 999 (1230)
T ss_pred cccCCccceEEEEEeecchhhhhcCCccCcchhHHHHHHHHHhcc------CCCccEEEEcCCchhhcccccchhhhccc
Confidence 3556788888877663 3577888999999999999887755443 24689999999999998888887765554
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC--CCCCccEEEeecccccCc
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT--KLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--~l~~i~~lVvDEad~lld 328 (330)
.|++++-+.|..... ...+. .++|+|+||.++..+.+.+.. .+.++..+|+||.|++-+
T Consensus 1000 ~g~k~ie~tgd~~pd--~~~v~-~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~ 1060 (1230)
T KOG0952|consen 1000 PGIKVIELTGDVTPD--VKAVR-EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE 1060 (1230)
T ss_pred CCceeEeccCccCCC--hhhee-cCceEEcccccccCccccccchhhhccccceeecccccccC
Confidence 588888888866654 23333 379999999999998886544 488999999999999864
No 144
>KOG0390|consensus
Probab=98.20 E-value=1.7e-05 Score=81.14 Aligned_cols=135 Identities=19% Similarity=0.178 Sum_probs=90.7
Q ss_pred CCCHHHHHhhhhhc---CCC-------cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 189 SPTPIQAQAVPAAL---SGR-------DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~---~g~-------d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
.+.|+|++.+.-+. .|. -+|+.-..|+|||+. +++++..++++-+.....-.++|||+|. .|+..|.+
T Consensus 238 ~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq-~IsflwtlLrq~P~~~~~~~k~lVV~P~-sLv~nWkk 315 (776)
T KOG0390|consen 238 ILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQ-CISFIWTLLRQFPQAKPLINKPLVVAPS-SLVNNWKK 315 (776)
T ss_pred hcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHH-HHHHHHHHHHhCcCccccccccEEEccH-HHHHHHHH
Confidence 46799999997654 222 344445679999954 3455555665533212223678999998 68899999
Q ss_pred HHHHhccCCCceEEEEECCCch-HHHHH------HHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 259 EAKRFGKGYNLSVVCCYGGGSK-WDQSK------ALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 259 ~~~~l~~~~~~~~~~~~gg~~~-~~~~~------~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
++.+|.....+....++|+... +.... ......-|+|.+.+.+.+..+. +.+..+.+||+||.|++=
T Consensus 316 EF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 316 EFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCcc
Confidence 9999987656777777777764 11111 1112346788888888766553 445689999999999863
No 145
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.20 E-value=4.8e-06 Score=85.10 Aligned_cols=98 Identities=14% Similarity=0.150 Sum_probs=72.2
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---HHH
Q psy17644 211 AKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS---KAL 287 (330)
Q Consensus 211 a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~l 287 (330)
+-+|||||.+|+-.+ ..++. .|..+|||+|...|..|+...++.... +..+..++++.+..+.. ..+
T Consensus 167 ~~~GSGKTevyl~~i-~~~l~-------~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 167 ALPGEDWARRLAAAA-AATLR-------AGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred cCCCCcHHHHHHHHH-HHHHH-------cCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHH
Confidence 336999999887544 44444 377899999999999999999987653 24677788877654432 233
Q ss_pred hC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 288 EL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 288 ~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
.. ...|||+|...++ ..+.++.+|||||=|-
T Consensus 237 ~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd 268 (665)
T PRK14873 237 LRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGD 268 (665)
T ss_pred hCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCc
Confidence 33 4799999965544 4578999999999874
No 146
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.15 E-value=1.2e-05 Score=85.53 Aligned_cols=113 Identities=24% Similarity=0.244 Sum_probs=78.7
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ 283 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~ 283 (330)
++..+++--||||||++-+..+- .++.. ...|+++||+-.+.|-.|+.+.+..++....... .-.+..+.
T Consensus 273 ~~~G~IWHtqGSGKTlTm~~~A~-~l~~~-----~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~~----~~~s~~~L 342 (962)
T COG0610 273 GKGGYIWHTQGSGKTLTMFKLAR-LLLEL-----PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFNDP----KAESTSEL 342 (962)
T ss_pred CCceEEEeecCCchHHHHHHHHH-HHHhc-----cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhcc----cccCHHHH
Confidence 35689999999999976543322 22222 3689999999999999999999999875432211 33445555
Q ss_pred HHHHhCC-CeEEEEChHHHHHHHHcCC--CCCCCccEEEeeccccc
Q psy17644 284 SKALELG-AEIVVGTPGRIIDMVKMGA--TKLNRVTFLVLDEADRM 326 (330)
Q Consensus 284 ~~~l~~~-~dIiV~TP~~L~~~l~~~~--~~l~~i~~lVvDEad~l 326 (330)
...+..+ ..|||||-.+|...+.... ..-.+=-+||+|||||-
T Consensus 343 k~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRS 388 (962)
T COG0610 343 KELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRS 388 (962)
T ss_pred HHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhc
Confidence 5556544 4899999999998886541 11223347899999983
No 147
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.11 E-value=4.7e-06 Score=86.90 Aligned_cols=128 Identities=18% Similarity=0.193 Sum_probs=94.1
Q ss_pred CCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCc
Q psy17644 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNL 269 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~ 269 (330)
+.|+-.|++-.+.-.+--|+...||-|||++..+|+....+. |..|-||+..--||..=.+++..+...+|+
T Consensus 168 m~~yDVQliGgivLh~G~IAEM~TGEGKTLvAtlp~yLnAL~--------GkgVHvVTVNDYLA~RDaewmgply~fLGL 239 (1112)
T PRK12901 168 MVHYDVQLIGGVVLHQGKIAEMATGEGKTLVATLPVYLNALT--------GNGVHVVTVNDYLAKRDSEWMGPLYEFHGL 239 (1112)
T ss_pred CcccchHHhhhhhhcCCceeeecCCCCchhHHHHHHHHHHHc--------CCCcEEEEechhhhhccHHHHHHHHHHhCC
Confidence 444444456555555667899999999999999999888775 556778888889999999999999999999
Q ss_pred eEEEEEC-CCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC------CCCCCCccEEEeecccccC
Q psy17644 270 SVVCCYG-GGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG------ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 270 ~~~~~~g-g~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~------~~~l~~i~~lVvDEad~ll 327 (330)
.+.|+.. +........ .-.|||..+|..-| +++|+.+ ..-.+.+.|.||||+|.+|
T Consensus 240 svg~i~~~~~~~~~rr~--aY~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 240 SVDCIDKHQPNSEARRK--AYNADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred ceeecCCCCCCHHHHHH--hCCCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 9988765 334433322 33589999997765 3333322 1124568999999999987
No 148
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.09 E-value=4.9e-06 Score=72.63 Aligned_cols=63 Identities=24% Similarity=0.282 Sum_probs=42.9
Q ss_pred CCCHHHHHhhhhhcCCC--cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 189 SPTPIQAQAVPAALSGR--DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~--d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
++++-|..++..++... -++++++.|+|||.+ +-.+...+.. .+.++++++||...+..+.+.
T Consensus 1 ~L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~--l~~~~~~~~~------~g~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGDRVSVLQGPAGTGKTTL--LKALAEALEA------AGKRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHH--HHHHHHHHHH------TT--EEEEESSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHH--HHHHHHHHHh------CCCeEEEECCcHHHHHHHHHh
Confidence 36789999999997433 366669999999943 3333333332 468999999999988876665
No 149
>KOG0392|consensus
Probab=98.09 E-value=3.3e-05 Score=81.14 Aligned_cols=133 Identities=20% Similarity=0.115 Sum_probs=86.5
Q ss_pred CCHHHHHhhhhhc---C-CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCC-CCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 190 PTPIQAQAVPAAL---S-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEP-GDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 190 pt~iQ~~~i~~~~---~-g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~-~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
++.+|++.+.++. . +=+.|+|--+|-|||+-.+-.+..-..+++.... .+..-.|||||. .|+-.|..++.+|+
T Consensus 976 LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~ 1054 (1549)
T KOG0392|consen 976 LRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFF 1054 (1549)
T ss_pred HHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhc
Confidence 3457888887753 2 2378999999999997644333333333322211 122337999997 68999999999998
Q ss_pred cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.. +++...+|+-..+...+.--++++|||+++..+..-+.. ..-..+.|.|+||.|-|=
T Consensus 1055 pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVik 1113 (1549)
T KOG0392|consen 1055 PF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVIK 1113 (1549)
T ss_pred ch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHHHHH--HHhcccceEEecCcceec
Confidence 76 555555665544333333334579999999988743211 011356799999999763
No 150
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=98.09 E-value=2.2e-05 Score=81.56 Aligned_cols=119 Identities=21% Similarity=0.208 Sum_probs=77.7
Q ss_pred HHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH-hccCCCceE
Q psy17644 193 IQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR-FGKGYNLSV 271 (330)
Q Consensus 193 iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~-l~~~~~~~~ 271 (330)
...+++.++.+.+-++++|+||||||...=.-++.... ..+.++.+.=|.|--|..+...+.. ++...|-.|
T Consensus 54 ~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~-------~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 54 VRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL-------GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred HHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc-------ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 44555566667778899999999999442222222221 2356777777988777777766543 444444444
Q ss_pred EEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 272 VCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 272 ~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
....-..+. ......|-+.|-|.|...+.+.. .|+.+.+|||||||.
T Consensus 127 GY~iRfe~~------~s~~Trik~mTdGiLlrei~~D~-~Ls~ys~vIiDEaHE 173 (845)
T COG1643 127 GYSIRFESK------VSPRTRIKVMTDGILLREIQNDP-LLSGYSVVIIDEAHE 173 (845)
T ss_pred eEEEEeecc------CCCCceeEEeccHHHHHHHhhCc-ccccCCEEEEcchhh
Confidence 333322221 22346899999999999987543 389999999999994
No 151
>KOG1803|consensus
Probab=98.03 E-value=1e-05 Score=79.62 Aligned_cols=66 Identities=20% Similarity=0.331 Sum_probs=51.3
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEE-cCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGV-AKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK 261 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~-a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~ 261 (330)
..+.+-|++|+...++.+++.++ ||+|+|||.+... ++.++++ .+.++||.+||+..+..|.+.+.
T Consensus 184 ~~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvE-iI~qlvk-------~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVE-IISQLVK-------QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHH-HHHHHHH-------cCCeEEEEcCchHHHHHHHHHhc
Confidence 35678899999999988775555 9999999965544 3444444 36799999999999999988644
No 152
>KOG0384|consensus
Probab=97.99 E-value=1.8e-05 Score=83.13 Aligned_cols=127 Identities=18% Similarity=0.239 Sum_probs=86.0
Q ss_pred CCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..++.+|...+..++ ++.++|+.-..|-|||+- .+..|..++.... ..||. |||+|... +.-|..++..+
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvq-ti~fl~~l~~~~~---~~gpf-lvvvplst-~~~W~~ef~~w 442 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQ-TITFLSYLFHSLQ---IHGPF-LVVVPLST-ITAWEREFETW 442 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchH-HHHHHHHHHHhhh---ccCCe-EEEeehhh-hHHHHHHHHHH
Confidence 578889999888775 788999999999999932 1223333333221 14564 88888744 46678888888
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhC---------CCeEEEEChHHHHHHHHcCCCCCC--CccEEEeecccccC
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALEL---------GAEIVVGTPGRIIDMVKMGATKLN--RVTFLVLDEADRMF 327 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~---------~~dIiV~TP~~L~~~l~~~~~~l~--~i~~lVvDEad~ll 327 (330)
+ ..++++.+|....++.++.+.. ..++||+|...++.- ...|+ ...+++|||||+|-
T Consensus 443 ~---~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----k~~L~~i~w~~~~vDeahrLk 510 (1373)
T KOG0384|consen 443 T---DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----KAELSKIPWRYLLVDEAHRLK 510 (1373)
T ss_pred h---hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----HhhhccCCcceeeecHHhhcC
Confidence 6 5677777877665555544321 368999998776532 12233 45799999999984
No 153
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.99 E-value=7e-05 Score=78.59 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=68.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH------hc---cCCCceEEEEE
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR------FG---KGYNLSVVCCY 275 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~------l~---~~~~~~~~~~~ 275 (330)
.++.+..+||+|||.+|+-.++... +. ....+.||+||+.+.-..+.+.+.. |. ....+....+-
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~-~~-----~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~ 133 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELH-QK-----YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVIN 133 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHH-HH-----cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEe
Confidence 4788889999999998887665443 22 1346899999999888777766541 11 11223333333
Q ss_pred CCC-------chHHHHHHHhC-------CCeEEEEChHHHHHHHH-cCC----------CC---CCCc-cEEEeeccccc
Q psy17644 276 GGG-------SKWDQSKALEL-------GAEIVVGTPGRIIDMVK-MGA----------TK---LNRV-TFLVLDEADRM 326 (330)
Q Consensus 276 gg~-------~~~~~~~~l~~-------~~dIiV~TP~~L~~~l~-~~~----------~~---l~~i-~~lVvDEad~l 326 (330)
++. ........+.. ..+|+|.|-+.|..-.. +.. .. +... -+||+||+|+|
T Consensus 134 S~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~ 213 (986)
T PRK15483 134 AGDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRF 213 (986)
T ss_pred cCcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCC
Confidence 332 11112222221 46899999988865211 110 11 1111 37899999998
Q ss_pred C
Q psy17644 327 F 327 (330)
Q Consensus 327 l 327 (330)
-
T Consensus 214 ~ 214 (986)
T PRK15483 214 P 214 (986)
T ss_pred C
Confidence 4
No 154
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.98 E-value=8.5e-05 Score=76.05 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=53.1
Q ss_pred CCCCHHHHHhhhhhcCC-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAALSG-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..+++.|..++..++.. ..+++.||+|+|||.+. ..++.++.. .+.++|+++||...+.++.+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~-~~ii~~~~~-------~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTL-VELIRQLVK-------RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHH-HHHHHHHHH-------cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 45789999999998876 55677799999999433 344445444 3679999999999999999888763
No 155
>KOG0920|consensus
Probab=97.93 E-value=7.5e-05 Score=77.81 Aligned_cols=124 Identities=16% Similarity=0.162 Sum_probs=86.4
Q ss_pred CCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH-hccCCC
Q psy17644 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR-FGKGYN 268 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~-l~~~~~ 268 (330)
.+..+.+.+.++.+.+-++++|.||+|||.-.---+|.+..... ...++++--|.|-.|.-+++.+.. .+...|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~-----~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g 248 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG-----AACNIICTQPRRISAISVAERVAKERGESLG 248 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC-----CCCeEEecCCchHHHHHHHHHHHHHhccccC
Confidence 35677888888888899999999999999553333455544432 345567777999888888887543 333344
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
-.+..-.+..... .....+++||-|.|++.+.. ...+..+..+|+||+|.
T Consensus 249 ~~VGYqvrl~~~~------s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHE 298 (924)
T KOG0920|consen 249 EEVGYQVRLESKR------SRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHE 298 (924)
T ss_pred CeeeEEEeeeccc------CCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEE
Confidence 4443333322221 12368999999999999876 55688999999999994
No 156
>KOG1802|consensus
Probab=97.92 E-value=3.5e-05 Score=76.54 Aligned_cols=83 Identities=20% Similarity=0.167 Sum_probs=64.8
Q ss_pred HHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 181 ALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 181 ~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
.+...++.++..-|..|+.++++..=.|+++|+|+|||++..- ++.|+..+ .+..+|+++|+.-.+.|+...+
T Consensus 402 ~~s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~-IVyhl~~~------~~~~VLvcApSNiAVDqLaeKI 474 (935)
T KOG1802|consen 402 RFSVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLARQ------HAGPVLVCAPSNIAVDQLAEKI 474 (935)
T ss_pred hhcCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHH-HHHHHHHh------cCCceEEEcccchhHHHHHHHH
Confidence 4566788889999999999999988889999999999966543 34455443 4567899999999999998888
Q ss_pred HHhccCCCceEEEE
Q psy17644 261 KRFGKGYNLSVVCC 274 (330)
Q Consensus 261 ~~l~~~~~~~~~~~ 274 (330)
.+- +++++-+
T Consensus 475 h~t----gLKVvRl 484 (935)
T KOG1802|consen 475 HKT----GLKVVRL 484 (935)
T ss_pred Hhc----CceEeee
Confidence 765 4555443
No 157
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.92 E-value=3.1e-05 Score=69.80 Aligned_cols=86 Identities=23% Similarity=0.327 Sum_probs=68.1
Q ss_pred CCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCC-chHHHHHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 238 GDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGG-SKWDQSKALEL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 238 ~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~-~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
...|.+|||+.+---|..+++.++.|.. .+..+.-+|.-. ...++...++. ..+|.||||+||..++..+.+.++++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~-k~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKG-KDCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhcc-CCchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 4579999999998888888888888731 123444455443 56677777775 68999999999999999999999999
Q ss_pred cEEEeeccc
Q psy17644 316 TFLVLDEAD 324 (330)
Q Consensus 316 ~~lVvDEad 324 (330)
.+||||--|
T Consensus 203 ~~ivlD~s~ 211 (252)
T PF14617_consen 203 KRIVLDWSY 211 (252)
T ss_pred eEEEEcCCc
Confidence 999999754
No 158
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.89 E-value=0.00013 Score=64.55 Aligned_cols=151 Identities=19% Similarity=0.296 Sum_probs=94.2
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcC---CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALS---GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~---g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
+|.-...+..|+=-+.. + --.++.|.++...+++ |++.+.+.-+|.||| ..++|++..++... ..-|.
T Consensus 4 ~w~p~~~P~wLl~E~e~-~-iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKT-sVI~Pmla~~LAdg------~~Lvr 74 (229)
T PF12340_consen 4 NWDPMEYPDWLLFEIES-N-ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKT-SVIVPMLALALADG------SRLVR 74 (229)
T ss_pred CCCchhChHHHHHHHHc-C-ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCcc-chHHHHHHHHHcCC------CcEEE
Confidence 45555556655444322 2 2467999999988874 689999999999999 56788888887642 24556
Q ss_pred EEcccHHHHHHHHHHHHHh-ccCCCceEEEE-ECCC---chH------HHHHHHhCCCeEEEEChHHHHHHHHc------
Q psy17644 245 ILAPTRELSQQIYNEAKRF-GKGYNLSVVCC-YGGG---SKW------DQSKALELGAEIVVGTPGRIIDMVKM------ 307 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l-~~~~~~~~~~~-~gg~---~~~------~~~~~l~~~~dIiV~TP~~L~~~l~~------ 307 (330)
+++|. .|..|.++.++.- +.-.+-++..+ |... +.. ...........|+++||+.++.+.-.
T Consensus 75 viVpk-~Ll~q~~~~L~~~lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~ 153 (229)
T PF12340_consen 75 VIVPK-ALLEQMRQMLRSRLGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQ 153 (229)
T ss_pred EEcCH-HHHHHHHHHHHHHHHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHH
Confidence 66665 6889999887754 33333333222 2211 111 11112333457999999998764311
Q ss_pred -CCC-----------CCCCccEEEeecccccCc
Q psy17644 308 -GAT-----------KLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 308 -~~~-----------~l~~i~~lVvDEad~lld 328 (330)
... -+.....=|+||+|.+|.
T Consensus 154 ~~~~~~~~~l~~~q~~l~~~~rdilDEsDe~L~ 186 (229)
T PF12340_consen 154 DGKPEEARELLKIQKWLDEHSRDILDESDEILS 186 (229)
T ss_pred hcCHHHHHHHHHHHHHHHhcCCeEeECchhccC
Confidence 111 034455679999998874
No 159
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.83 E-value=4.7e-05 Score=72.54 Aligned_cols=94 Identities=17% Similarity=0.207 Sum_probs=58.6
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA 286 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~ 286 (330)
+++.|..|||||+..+- ++..+.. ...+.+++++++...|...+...+..-...
T Consensus 4 ~~I~G~aGTGKTvla~~-l~~~l~~-----~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-------------------- 57 (352)
T PF09848_consen 4 ILITGGAGTGKTVLALN-LAKELQN-----SEEGKKVLYLCGNHPLRNKLREQLAKKYNP-------------------- 57 (352)
T ss_pred EEEEecCCcCHHHHHHH-HHHHhhc-----cccCCceEEEEecchHHHHHHHHHhhhccc--------------------
Confidence 56779999999965432 3333311 124778899999999998888877654200
Q ss_pred HhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 287 LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 287 l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
......+..|..+...+..........++|||||||+|.+
T Consensus 58 --~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 58 --KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 0012233444444433322233467889999999999976
No 160
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.75 E-value=5e-05 Score=66.53 Aligned_cols=59 Identities=22% Similarity=0.137 Sum_probs=40.6
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L 252 (330)
...|.-|..++.++++..-+++.|+.|+|||+..+..++..+... .--+++|+-|+.+.
T Consensus 3 ~p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g------~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEG------EYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTT------S-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhC------CCcEEEEEecCCCC
Confidence 345789999999999777788889999999999888888887652 34577887777653
No 161
>KOG0388|consensus
Probab=97.71 E-value=7.5e-05 Score=74.71 Aligned_cols=123 Identities=20% Similarity=0.290 Sum_probs=85.7
Q ss_pred HHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 192 PIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 192 ~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
.+|...+..+. +|-+.|+.-..|-|||+ -.+.+|.|+..+... -|| -|||+|...| ..|.+++.+|+..
T Consensus 570 EYQlkGLnWLvnlYdqGiNGILADeMGLGKTV-QsisvlAhLaE~~nI---wGP-FLVVtpaStL-~NWaqEisrFlP~- 642 (1185)
T KOG0388|consen 570 EYQLKGLNWLVNLYDQGINGILADEMGLGKTV-QSISVLAHLAETHNI---WGP-FLVVTPASTL-HNWAQEISRFLPS- 642 (1185)
T ss_pred HHhhccHHHHHHHHHccccceehhhhccchhH-HHHHHHHHHHHhccC---CCc-eEEeehHHHH-hHHHHHHHHhCcc-
Confidence 56766666654 78888999999999995 456678888776432 245 4888998666 7788889998764
Q ss_pred CceEEEEECCCchHHHHHH---------HhCCCeEEEEChHHHHH---HHHcCCCCCCCccEEEeecccccC
Q psy17644 268 NLSVVCCYGGGSKWDQSKA---------LELGAEIVVGTPGRIID---MVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~---------l~~~~dIiV~TP~~L~~---~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+++.-.+|+...+.-.+. -..+.||+|+|...+.. +++ --.+.|.|+|||..+-
T Consensus 643 -~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~q-----kvKWQYMILDEAQAIK 708 (1185)
T KOG0388|consen 643 -FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQ-----KVKWQYMILDEAQAIK 708 (1185)
T ss_pred -ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHH-----hhhhhheehhHHHHhh
Confidence 677777777765443332 12268999999876542 222 1246899999998763
No 162
>KOG0386|consensus
Probab=97.66 E-value=6.8e-05 Score=77.47 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=80.0
Q ss_pred CCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 189 SPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.+.++|...+.++. +.-+.|+.-.+|-|||.. .+.++.+++..+. ..||. |||||+-.|. -|..++-+|+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQ-tIsLitYLmE~K~---~~GP~-LvivPlstL~-NW~~Ef~kWa 467 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQ-TISLITYLMEHKQ---MQGPF-LIIVPLSTLV-NWSSEFPKWA 467 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHH-HHHHHHHHHHHcc---cCCCe-EEeccccccC-Cchhhccccc
Confidence 56678888777664 334667778899999954 3455566665433 25776 8899998884 4667777775
Q ss_pred cCCCceEEEEECCCchHH--HH-HHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 265 KGYNLSVVCCYGGGSKWD--QS-KALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~--~~-~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.. -....|.|..... .. .......+|+++|.+.++. .+..+.--++.|+||||.|+|-
T Consensus 468 PS---v~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmK 528 (1157)
T KOG0386|consen 468 PS---VQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMK 528 (1157)
T ss_pred cc---eeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeeccccccc
Confidence 42 2233444443211 01 1112347999999887765 1111112356799999999985
No 163
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.62 E-value=0.0002 Score=73.78 Aligned_cols=127 Identities=19% Similarity=0.205 Sum_probs=98.4
Q ss_pred CHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCce
Q psy17644 191 TPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLS 270 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~ 270 (330)
+|+-.|.+-.+.....-++-..||-|||++..+|+....+. |..|.+|+-.--||..-..++.++...+|+.
T Consensus 80 ~~~dVQliG~i~lh~g~iaEM~TGEGKTL~atlp~ylnaL~--------gkgVhvVTvNdYLA~RDae~m~~l~~~LGls 151 (822)
T COG0653 80 RHFDVQLLGGIVLHLGDIAEMRTGEGKTLVATLPAYLNALA--------GKGVHVVTVNDYLARRDAEWMGPLYEFLGLS 151 (822)
T ss_pred ChhhHHHhhhhhhcCCceeeeecCCchHHHHHHHHHHHhcC--------CCCcEEeeehHHhhhhCHHHHHHHHHHcCCc
Confidence 34445566667767778899999999999999998766554 5678888999999999999999999999999
Q ss_pred EEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC------CCCCCCccEEEeecccccC
Q psy17644 271 VVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG------ATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 271 ~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~------~~~l~~i~~lVvDEad~ll 327 (330)
+.+...+.........+. |||..+|-..| ++.++-+ ......+.|.|+||+|.||
T Consensus 152 vG~~~~~m~~~ek~~aY~--~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 152 VGVILAGMSPEEKRAAYA--CDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eeeccCCCChHHHHHHHh--cCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 999999888776665554 79999997765 2222211 1124468899999999886
No 164
>PF13245 AAA_19: Part of AAA domain
Probab=97.61 E-value=0.00028 Score=51.81 Aligned_cols=53 Identities=23% Similarity=0.429 Sum_probs=36.9
Q ss_pred CCc-EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 204 GRD-IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 204 g~d-~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
+.. +++.++.|||||...+ .++.+++..+. ..+.++||++||+..+..+.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~-~~i~~l~~~~~---~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLA-ARIAELLAARA---DPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHH-HHHHHHHHHhc---CCCCeEEEECCCHHHHHHHHHHH
Confidence 444 4458999999995433 34444443211 12678999999999999988887
No 165
>KOG0926|consensus
Probab=97.59 E-value=0.00024 Score=72.13 Aligned_cols=116 Identities=21% Similarity=0.237 Sum_probs=70.5
Q ss_pred HhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEcccHHHHHHHHHHHH-HhccCCC--ce
Q psy17644 196 QAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQK--ELEPGDGPMGLILAPTRELSQQIYNEAK-RFGKGYN--LS 270 (330)
Q Consensus 196 ~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~--~~~~~~~~~vLil~Ptr~La~Qi~~~~~-~l~~~~~--~~ 270 (330)
+++.+|...-=+|+||.||||||. .+|- +++... .....++..+=|--|.|-.|.-+..... .++. ++ +.
T Consensus 263 ~IMEaIn~n~vvIIcGeTGsGKTT--QvPQ--FLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~-~~~eVs 337 (1172)
T KOG0926|consen 263 RIMEAINENPVVIICGETGSGKTT--QVPQ--FLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGV-LGSEVS 337 (1172)
T ss_pred HHHHHhhcCCeEEEecCCCCCccc--cchH--HHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhcc-Ccccee
Confidence 344445555567888999999993 3442 222211 1111123355566788887776665533 3333 33 33
Q ss_pred EEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 271 VVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 271 ~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
....|.|.- .....|.+.|-|.|+.-+.+. +.|....++||||||.
T Consensus 338 YqIRfd~ti--------~e~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEAHE 383 (1172)
T KOG0926|consen 338 YQIRFDGTI--------GEDTSIKFMTDGVLLREIEND-FLLTKYSVIILDEAHE 383 (1172)
T ss_pred EEEEecccc--------CCCceeEEecchHHHHHHHHh-HhhhhceeEEechhhh
Confidence 344454433 234689999999999877643 3477889999999994
No 166
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=97.52 E-value=0.00021 Score=69.74 Aligned_cols=68 Identities=29% Similarity=0.331 Sum_probs=49.9
Q ss_pred CCCHHHHHhhhhhcCC-----CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 189 SPTPIQAQAVPAALSG-----RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g-----~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.|+.-|-+||..+..| +.-.+.|.||||||++.. +-+-+ -+..+||++|.+.||.|++.+++.|
T Consensus 12 ~PaGDQP~AI~~Lv~gi~~g~~~QtLLGvTGSGKTfT~A----nVI~~-------~~rPtLV~AhNKTLAaQLy~Efk~f 80 (663)
T COG0556 12 KPAGDQPEAIAELVEGIENGLKHQTLLGVTGSGKTFTMA----NVIAK-------VQRPTLVLAHNKTLAAQLYSEFKEF 80 (663)
T ss_pred CCCCCcHHHHHHHHHHHhcCceeeEEeeeccCCchhHHH----HHHHH-------hCCCeEEEecchhHHHHHHHHHHHh
Confidence 4667777777776533 567788999999995432 22222 1344799999999999999999999
Q ss_pred ccCC
Q psy17644 264 GKGY 267 (330)
Q Consensus 264 ~~~~ 267 (330)
...-
T Consensus 81 FP~N 84 (663)
T COG0556 81 FPEN 84 (663)
T ss_pred CcCc
Confidence 7643
No 167
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.51 E-value=0.00032 Score=64.87 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=51.1
Q ss_pred CCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
+|+-|.+++.. ....+++.|..|||||.+.+.-++ +++.... ....++|+|++|+..|..+...+...+.
T Consensus 1 l~~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~-~ll~~~~---~~~~~Il~lTft~~aa~e~~~ri~~~l~ 70 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIA-YLLYEGG---VPPERILVLTFTNAAAQEMRERIRELLE 70 (315)
T ss_dssp S-HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHH-HHHHTSS---STGGGEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHH-Hhhcccc---CChHHheecccCHHHHHHHHHHHHHhcC
Confidence 46889999988 678899999999999965544343 4444322 2456799999999999999999888644
No 168
>KOG1805|consensus
Probab=97.50 E-value=0.0005 Score=71.18 Aligned_cols=136 Identities=20% Similarity=0.171 Sum_probs=84.6
Q ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcE-EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 171 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDI-IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 171 ~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~-i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
...+.+.+... ....+..-|++|+-.++..+|. ++.|-+|+|||.+-+. ++..+.. .|.+||+.+=|
T Consensus 655 ~~~~~p~~~~~----~~~~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~-------~gkkVLLtsyT 722 (1100)
T KOG1805|consen 655 SKVLIPKIKKI----ILLRLNNDQRQALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA-------LGKKVLLTSYT 722 (1100)
T ss_pred ccccCchhhHH----HHhhcCHHHHHHHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH-------cCCeEEEEehh
Confidence 34455554442 2345678899999999988875 4458899999944332 2222222 47789999999
Q ss_pred HHHHHHHHHHHHHhccCCCceEEEEECC-CchHH-----------------HHHHHhCCCeEEEEChHHHHHHHHcCCCC
Q psy17644 250 RELSQQIYNEAKRFGKGYNLSVVCCYGG-GSKWD-----------------QSKALELGAEIVVGTPGRIIDMVKMGATK 311 (330)
Q Consensus 250 r~La~Qi~~~~~~l~~~~~~~~~~~~gg-~~~~~-----------------~~~~l~~~~dIiV~TP~~L~~~l~~~~~~ 311 (330)
...+..|.-.++.+. +.+. ..|. ..... ..+..-....||.||-.++.+.+. .
T Consensus 723 hsAVDNILiKL~~~~----i~~l-RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf----~ 793 (1100)
T KOG1805|consen 723 HSAVDNILIKLKGFG----IYIL-RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLF----V 793 (1100)
T ss_pred hHHHHHHHHHHhccC----ccee-ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhh----h
Confidence 888777776666652 2221 1121 11111 112223357899999877776553 2
Q ss_pred CCCccEEEeecccccC
Q psy17644 312 LNRVTFLVLDEADRMF 327 (330)
Q Consensus 312 l~~i~~lVvDEad~ll 327 (330)
.+.++|.|||||-+|+
T Consensus 794 ~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 794 NRQFDYCIIDEASQIL 809 (1100)
T ss_pred ccccCEEEEccccccc
Confidence 4568999999998875
No 169
>KOG1000|consensus
Probab=97.50 E-value=0.00075 Score=65.29 Aligned_cols=125 Identities=17% Similarity=0.188 Sum_probs=82.4
Q ss_pred CCCCHHHHHhhhhhc-CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 188 TSPTPIQAQAVPAAL-SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~-~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
..+-|+|+..+...+ .|-.+++.-.+|-|||+-.+..+ ..+.. .+| .|||||. .+-..|.+.+.+|...
T Consensus 197 s~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA--~yyra------Ewp-lliVcPA-svrftWa~al~r~lps 266 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIA--RYYRA------EWP-LLIVCPA-SVRFTWAKALNRFLPS 266 (689)
T ss_pred HhhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHH--HHHhh------cCc-EEEEecH-HHhHHHHHHHHHhccc
Confidence 446799999887766 66778888999999997665333 22221 344 4888997 4557788888888765
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
..- +.++.++...- ..+.....|.|.+...|..+-.. ..-....+||+||.|.|-+
T Consensus 267 ~~p-i~vv~~~~D~~---~~~~t~~~v~ivSye~ls~l~~~--l~~~~~~vvI~DEsH~Lk~ 322 (689)
T KOG1000|consen 267 IHP-IFVVDKSSDPL---PDVCTSNTVAIVSYEQLSLLHDI--LKKEKYRVVIFDESHMLKD 322 (689)
T ss_pred ccc-eEEEecccCCc---cccccCCeEEEEEHHHHHHHHHH--HhcccceEEEEechhhhhc
Confidence 332 44555554431 12233357889998887654331 2223578999999998743
No 170
>PRK10536 hypothetical protein; Provisional
Probab=97.50 E-value=0.00087 Score=60.61 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=43.2
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
.++..-+..|...+.++.++.-+++.|++|+|||+..+..++..++.. .-.+++|.-|+..
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~------~~~kIiI~RP~v~ 115 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK------DVDRIIVTRPVLQ 115 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC------CeeEEEEeCCCCC
Confidence 345566889999999998888788889999999977766666555442 2244555556543
No 171
>KOG0922|consensus
Probab=97.43 E-value=0.0007 Score=67.63 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=71.8
Q ss_pred HHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH-HhccCCCceEE
Q psy17644 194 QAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK-RFGKGYNLSVV 272 (330)
Q Consensus 194 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~-~l~~~~~~~~~ 272 (330)
-.+++-.+-+.+-+|+.|.||||||. .+|- .+.... . ....++-+.=|.|-.|..++.... ..+..+|-.+.
T Consensus 56 r~~il~~ve~nqvlIviGeTGsGKST--QipQ--yL~eaG-~--~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 56 RDQILYAVEDNQVLIVIGETGSGKST--QIPQ--YLAEAG-F--ASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHHHHCCEEEEEcCCCCCccc--cHhH--HHHhcc-c--ccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 34555566677889999999999993 2332 122210 0 122346677788888877776643 34444444443
Q ss_pred EEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 273 CCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 273 ~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
...--.+. -.....|.+.|-|.|+.-+.. ...|+...++||||||.
T Consensus 129 Y~IRFed~------ts~~TrikymTDG~LLRE~l~-Dp~LskYsvIIlDEAHE 174 (674)
T KOG0922|consen 129 YTIRFEDS------TSKDTRIKYMTDGMLLREILK-DPLLSKYSVIILDEAHE 174 (674)
T ss_pred eEEEeccc------CCCceeEEEecchHHHHHHhc-CCccccccEEEEechhh
Confidence 33211111 111358999999999875542 23478999999999994
No 172
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.39 E-value=0.0013 Score=66.81 Aligned_cols=70 Identities=20% Similarity=0.181 Sum_probs=49.7
Q ss_pred CHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 191 TPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..+|+.++..++..+-+++.|+.|+|||.+. ..++..+...... ...+++++.+||.-.|..+.+.+...
T Consensus 147 ~~~Qk~A~~~al~~~~~vitGgpGTGKTt~v-~~ll~~l~~~~~~--~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 147 QNWQKVAVALALKSNFSLITGGPGTGKTTTV-ARLLLALVKQSPK--QGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred cHHHHHHHHHHhhCCeEEEEcCCCCCHHHHH-HHHHHHHHHhccc--cCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 3799999999999999999999999999432 2222223222110 11368999999999988888776654
No 173
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.39 E-value=0.0012 Score=68.75 Aligned_cols=66 Identities=20% Similarity=0.203 Sum_probs=47.1
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
...+++.|+.++..+..++-+++.++.|+|||.+ +-.+..++... +....+++++||...|.++.+
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~--l~~i~~~~~~~----~~~~~v~l~ApTg~AA~~L~e 386 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTI--TRAIIELAEEL----GGLLPVGLAAPTGRAAKRLGE 386 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHH--HHHHHHHHHHc----CCCceEEEEeCchHHHHHHHH
Confidence 3578999999999999888899999999999943 22333333321 011568889999888775443
No 174
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.34 E-value=0.00098 Score=67.84 Aligned_cols=70 Identities=20% Similarity=0.198 Sum_probs=50.6
Q ss_pred CHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 191 TPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
..+|+.|+-..+..+-+++.|++|+|||.+. .-++..+..... ....++++++||...|.++.+.+....
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~---~~~~~i~l~APTgkAA~rL~e~~~~~~ 223 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLAD---GERCRIRLAAPTGKAAARLTESLGKAL 223 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcC---CCCcEEEEECCcHHHHHHHHHHHHhhh
Confidence 5899999999999999999999999999432 122222322110 123578899999999999888776543
No 175
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=97.34 E-value=0.00053 Score=70.42 Aligned_cols=108 Identities=16% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCCcEEEE-cCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 203 SGRDIIGV-AKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 203 ~g~d~i~~-a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
.++.+.++ +|+|||||.+. +..|...++. ...++|+|+..|.|+.++...++...-. ++....-.++....
T Consensus 47 ~~~~V~vVRSpMGTGKTtaL-i~wLk~~l~~------~~~~VLvVShRrSL~~sL~~rf~~~~l~-gFv~Y~d~~~~~i~ 118 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTAL-IRWLKDALKN------PDKSVLVVSHRRSLTKSLAERFKKAGLS-GFVNYLDSDDYIID 118 (824)
T ss_pred CCCCeEEEECCCCCCcHHHH-HHHHHHhccC------CCCeEEEEEhHHHHHHHHHHHHhhcCCC-cceeeecccccccc
Confidence 45555554 99999999554 4455554432 4678999999999999999988765211 22211111111110
Q ss_pred HHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 282 DQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 282 ~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
....+-+++....|..+. ...+.+.++|||||+-..+
T Consensus 119 ------~~~~~rLivqIdSL~R~~---~~~l~~yDvVIIDEv~svL 155 (824)
T PF02399_consen 119 ------GRPYDRLIVQIDSLHRLD---GSLLDRYDVVIIDEVMSVL 155 (824)
T ss_pred ------ccccCeEEEEehhhhhcc---cccccccCEEEEehHHHHH
Confidence 012355666666665443 2346678999999987654
No 176
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.32 E-value=0.0016 Score=67.94 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=46.2
Q ss_pred CCCCHHHHHhhhhhcCC-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAALSG-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
..+++-|+.++..++.+ +-+++.++.|+||| +++-.+..++.. .+.++++++||.-.|..+.
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKT--tll~~i~~~~~~------~g~~V~~~ApTg~Aa~~L~ 413 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKS--TMLKAAREAWEA------AGYRVIGAALSGKAAEGLQ 413 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHH--HHHHHHHHHHHh------CCCeEEEEeCcHHHHHHHH
Confidence 45899999999998875 55677799999999 344445555443 4678999999977766543
No 177
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=97.29 E-value=0.002 Score=68.11 Aligned_cols=81 Identities=25% Similarity=0.134 Sum_probs=49.8
Q ss_pred CHHHHHhhhhhcC--------CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 191 TPIQAQAVPAALS--------GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 191 t~iQ~~~i~~~~~--------g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
..+|-.|+..+.. |--++-.|.||+|||++=.=.|.. +.. ...|.+..|-.-.|.|-.|+-..+++
T Consensus 410 F~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImya--Lsd----~~~g~RfsiALGLRTLTLQTGda~r~ 483 (1110)
T TIGR02562 410 FRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYA--LRD----DKQGARFAIALGLRSLTLQTGHALKT 483 (1110)
T ss_pred cchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHH--hCC----CCCCceEEEEccccceeccchHHHHH
Confidence 4588888887763 223444499999999775432221 111 13466777778888888888777776
Q ss_pred hccCCCceEEEEECC
Q psy17644 263 FGKGYNLSVVCCYGG 277 (330)
Q Consensus 263 l~~~~~~~~~~~~gg 277 (330)
-..-..-...+++||
T Consensus 484 rL~L~~ddLAVlIGs 498 (1110)
T TIGR02562 484 RLNLSDDDLAVLIGG 498 (1110)
T ss_pred hcCCCccceEEEECH
Confidence 544323334444443
No 178
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.29 E-value=0.0008 Score=71.18 Aligned_cols=134 Identities=23% Similarity=0.193 Sum_probs=86.8
Q ss_pred CCCCHHHHHhhhhhc-----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAAL-----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~-----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
..+.++|...+..+. .+.+.++....|-|||+..+.-+.. ++.... ...+.+||+||+ +++.+|..++.+
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~-~~~~~~---~~~~~~liv~p~-s~~~nw~~e~~k 411 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLS-LLESIK---VYLGPALIVVPA-SLLSNWKREFEK 411 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHh-hhhccc---CCCCCeEEEecH-HHHHHHHHHHhh
Confidence 446677888887654 3677888899999999554433322 222211 125688999998 677899999998
Q ss_pred hccCCCceEEEEECCCch----HHHHHHHhC-C----CeEEEEChHHHHHHH-HcCCCCCCCccEEEeecccccC
Q psy17644 263 FGKGYNLSVVCCYGGGSK----WDQSKALEL-G----AEIVVGTPGRIIDMV-KMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 263 l~~~~~~~~~~~~gg~~~----~~~~~~l~~-~----~dIiV~TP~~L~~~l-~~~~~~l~~i~~lVvDEad~ll 327 (330)
+...... +...+|.... ......+.. . .+|+++|.+.|.... ......-..+.++|+||||++-
T Consensus 412 ~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 412 FAPDLRL-VLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred hCccccc-eeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHh
Confidence 8765443 4445554431 333333322 2 699999999998742 1122334567899999999864
No 179
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.26 E-value=0.0028 Score=58.35 Aligned_cols=141 Identities=16% Similarity=0.148 Sum_probs=85.4
Q ss_pred CCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhc----------CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCC
Q psy17644 170 GHFGFDEVLMKALRKCEYTSPTPIQAQAVPAAL----------SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGD 239 (330)
Q Consensus 170 ~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~----------~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~ 239 (330)
-.+.|+..++.. | .++..|.+++-.+. ..+-.++--.||.||.....--++.+++..
T Consensus 24 y~~~lp~~~~~~----g--~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G------- 90 (303)
T PF13872_consen 24 YRLHLPEEVIDS----G--LLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRG------- 90 (303)
T ss_pred cccCCCHHHHhc----c--cccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcC-------
Confidence 345677765432 2 46788888876553 234455557799888644333355555542
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC---CCCC----
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG---ATKL---- 312 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~---~~~l---- 312 (330)
..++|+|..+..|.....+.++.++.. .+.+..+..-.. .....+ .-.||++|...|..--.++ ...+
T Consensus 91 r~r~vwvS~s~dL~~Da~RDl~DIG~~-~i~v~~l~~~~~--~~~~~~--~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~ 165 (303)
T PF13872_consen 91 RKRAVWVSVSNDLKYDAERDLRDIGAD-NIPVHPLNKFKY--GDIIRL--KEGVLFSTYSTLISESQSGGKYRSRLDQLV 165 (303)
T ss_pred CCceEEEECChhhhhHHHHHHHHhCCC-cccceechhhcc--CcCCCC--CCCccchhHHHHHhHHhccCCccchHHHHH
Confidence 346899999999999999999988654 333333322000 001112 3469999999888765321 1111
Q ss_pred -----CCccEEEeecccccCc
Q psy17644 313 -----NRVTFLVLDEADRMFD 328 (330)
Q Consensus 313 -----~~i~~lVvDEad~lld 328 (330)
..=.+|||||||++-.
T Consensus 166 ~W~g~dfdgvivfDEcH~akn 186 (303)
T PF13872_consen 166 DWCGEDFDGVIVFDECHKAKN 186 (303)
T ss_pred HHHhcCCCceEEeccchhcCC
Confidence 1125899999998753
No 180
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.25 E-value=0.00042 Score=66.34 Aligned_cols=59 Identities=20% Similarity=0.307 Sum_probs=46.5
Q ss_pred CCHHHHHhhhhh------cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q psy17644 190 PTPIQAQAVPAA------LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQI 256 (330)
Q Consensus 190 pt~iQ~~~i~~~------~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi 256 (330)
+++-|+.++..+ ..+..+++.|+-|+||| |++-++.+.+.. .+..+++++||--.|..+
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs--~l~~~i~~~~~~------~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKS--FLIKAIIDYLRS------RGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChh--HHHHHHHHHhcc------ccceEEEecchHHHHHhc
Confidence 567788888888 68889999999999999 666666665543 467899999998777655
No 181
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.23 E-value=0.002 Score=68.76 Aligned_cols=61 Identities=20% Similarity=0.137 Sum_probs=45.7
Q ss_pred CCCCHHHHHhhhhhcCCCc-EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAALSGRD-IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQI 256 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d-~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi 256 (330)
..+++-|.+++..++.+++ +++.+..|+|||.+ +-++..+... .|.+++.++||--.|..+
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~--l~~~~~~~e~------~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAM--LGVAREAWEA------AGYEVRGAALSGIAAENL 406 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHH--HHHHHHHHHH------cCCeEEEecCcHHHHHHH
Confidence 4689999999999998776 45669999999954 3344444432 478899999998766554
No 182
>KOG1131|consensus
Probab=97.20 E-value=0.0029 Score=61.72 Aligned_cols=73 Identities=15% Similarity=0.119 Sum_probs=41.2
Q ss_pred CCCCCHHHHHhhhhh----cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 187 YTSPTPIQAQAVPAA----LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~----~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
|...+|-|-.-.--+ -.+-+.++..|+|+|||.+.+--++...+..+. ...+.++-.-|..-+.....++++
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~----~~~KliYCSRTvpEieK~l~El~~ 89 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPD----EHRKLIYCSRTVPEIEKALEELKR 89 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCc----ccceEEEecCcchHHHHHHHHHHH
Confidence 445566665544332 356678999999999997765555554444321 223444544454444444444444
Q ss_pred h
Q psy17644 263 F 263 (330)
Q Consensus 263 l 263 (330)
+
T Consensus 90 l 90 (755)
T KOG1131|consen 90 L 90 (755)
T ss_pred H
Confidence 3
No 183
>KOG1133|consensus
Probab=97.16 E-value=0.0029 Score=63.57 Aligned_cols=42 Identities=26% Similarity=0.305 Sum_probs=33.4
Q ss_pred CCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
.+|+.||.+.+..++ .|+=.|+.+|||+|||+..+-.++.++
T Consensus 14 y~PYdIQ~~lM~elyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 14 YTPYDIQEDLMRELYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred CCchhHHHHHHHHHHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 468899998887765 789888889999999987666665544
No 184
>KOG0925|consensus
Probab=96.97 E-value=0.0044 Score=60.04 Aligned_cols=88 Identities=17% Similarity=0.122 Sum_probs=54.2
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
+..|...+++++..+.+++..--.-+..+...+..+.+.+-+++++.||||||.-.=--++...+.. ...|..
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~-------~~~v~C 96 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSH-------LTGVAC 96 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhh-------ccceee
Confidence 5668888888888888776544334455555666677888899999999999932100011111111 123344
Q ss_pred EcccHHHHHHHHHHH
Q psy17644 246 LAPTRELSQQIYNEA 260 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~ 260 (330)
--|.|..|.++....
T Consensus 97 TQprrvaamsva~RV 111 (699)
T KOG0925|consen 97 TQPRRVAAMSVAQRV 111 (699)
T ss_pred cCchHHHHHHHHHHH
Confidence 457777777766553
No 185
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=96.97 E-value=0.0061 Score=62.67 Aligned_cols=67 Identities=30% Similarity=0.386 Sum_probs=50.3
Q ss_pred CCCHHHHHhhhhhcC----C-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 189 SPTPIQAQAVPAALS----G-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~----g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.|+..|..+|..+.+ | +..++.|-||||||+... . ++.+ .+..+|||+|+..+|.|++..++.|
T Consensus 9 ~~~~~Q~~ai~~l~~~~~~~~~~~~l~Gvtgs~kt~~~a--~---~~~~------~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 9 QPAGDQPKAIAKLVEGLTDGEKHQTLLGVTGSGKTFTMA--N---VIAQ------VNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred CCChHHHHHHHHHHHhhhcCCCcEEEECCCCcHHHHHHH--H---HHHH------hCCCEEEEECCHHHHHHHHHHHHHh
Confidence 688899999888753 3 366788999999995432 2 2221 1345799999999999999999999
Q ss_pred ccC
Q psy17644 264 GKG 266 (330)
Q Consensus 264 ~~~ 266 (330)
...
T Consensus 78 ~p~ 80 (655)
T TIGR00631 78 FPE 80 (655)
T ss_pred CCC
Confidence 753
No 186
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.94 E-value=0.00052 Score=55.09 Aligned_cols=18 Identities=39% Similarity=0.396 Sum_probs=11.3
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
+++-+++.|++|+|||.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~ 20 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTL 20 (131)
T ss_dssp ----EEEEE-TTSSHHHH
T ss_pred CCcccEEEcCCCCCHHHH
Confidence 345678889999999944
No 187
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.80 E-value=0.0086 Score=47.96 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.++.+++.|++|+|||.
T Consensus 18 ~~~~v~i~G~~G~GKT~ 34 (151)
T cd00009 18 PPKNLLLYGPPGTGKTT 34 (151)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 36789999999999994
No 188
>PHA02533 17 large terminase protein; Provisional
Probab=96.72 E-value=0.0054 Score=61.53 Aligned_cols=122 Identities=16% Similarity=0.013 Sum_probs=76.5
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.|.|+|...+..+..+|-.++..+-..|||.+.+.-++...+.. .+..+++++|++..|..+++.++.+....+
T Consensus 59 ~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~------~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P 132 (534)
T PHA02533 59 QMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN------KDKNVGILAHKASMAAEVLDRTKQAIELLP 132 (534)
T ss_pred CCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHHHHHHHHHHHhCH
Confidence 57899999998876667677777888999976665455444432 356999999999999999998887654332
Q ss_pred c--eEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 269 L--SVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 269 ~--~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
. +...... + .....+.+|+.|.+.|-. .+...=.+..++|+||+|.+-
T Consensus 133 ~l~~~~i~~~--~--~~~I~l~NGS~I~~lss~-------~~t~rG~~~~~liiDE~a~~~ 182 (534)
T PHA02533 133 DFLQPGIVEW--N--KGSIELENGSKIGAYASS-------PDAVRGNSFAMIYIDECAFIP 182 (534)
T ss_pred HHhhcceeec--C--ccEEEeCCCCEEEEEeCC-------CCccCCCCCceEEEeccccCC
Confidence 1 1000000 0 011223456676554421 111122356789999999753
No 189
>KOG0923|consensus
Probab=96.70 E-value=0.0058 Score=61.23 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=70.3
Q ss_pred CHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH-HhccCCCc
Q psy17644 191 TPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK-RFGKGYNL 269 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~-~l~~~~~~ 269 (330)
.++-.+++.++..++=+|+.|.|||||| ..+|-..+ ... . .+.|.++-+--|.|-.|..+...+. .++..+|.
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKT--TQiPQyL~--EaG-y-tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~ 340 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKT--TQIPQYLY--EAG-Y-TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGH 340 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCcc--ccccHHHH--hcc-c-ccCCceEeecCcchHHHHHHHHHHHHHhCccccc
Confidence 3444555666667778888899999999 34553322 110 0 0123446666788988888776643 33333332
Q ss_pred eEEE--EECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 270 SVVC--CYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 270 ~~~~--~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
.+.. -|..... ...-|=+.|-|.|+.=+.. -..|.+..++||||||.
T Consensus 341 eVGYsIRFEdcTS--------ekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHE 389 (902)
T KOG0923|consen 341 EVGYSIRFEDCTS--------EKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHE 389 (902)
T ss_pred ccceEEEeccccC--------cceeeeeecchhHHHHHhc-cccccceeEEEeehhhh
Confidence 2211 1111111 1134557898888774432 34588999999999994
No 190
>PRK04296 thymidine kinase; Provisional
Probab=96.65 E-value=0.0067 Score=52.58 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=23.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP 248 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P 248 (330)
.=.++.+++|+|||.. ++-++.++.. .+.+++|+-|
T Consensus 3 ~i~litG~~GsGKTT~-~l~~~~~~~~-------~g~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTE-LLQRAYNYEE-------RGMKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHH-HHHHHHHHHH-------cCCeEEEEec
Confidence 3467789999999944 3344444433 3667888866
No 191
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.63 E-value=0.0055 Score=63.03 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=32.0
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
-++=+.+.||+|||.+|+--|...-.+ ..-.+-||||||.+.-.-++.
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~------YG~~KFIivVPs~AIkeGv~~ 122 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK------YGLFKFIIVVPSLAIKEGVFL 122 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH------hCceeEEEEeccHHHHhhhHH
Confidence 356667999999999997544432111 234678999999876544333
No 192
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.58 E-value=0.0039 Score=49.45 Aligned_cols=17 Identities=47% Similarity=0.561 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++.+++.+++|+|||..
T Consensus 2 ~~~~~l~G~~G~GKTtl 18 (148)
T smart00382 2 GEVILIVGPPGSGKTTL 18 (148)
T ss_pred CCEEEEECCCCCcHHHH
Confidence 56789999999999943
No 193
>KOG0924|consensus
Probab=96.57 E-value=0.01 Score=59.76 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=64.4
Q ss_pred HHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH-hccCCCceEE
Q psy17644 194 QAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR-FGKGYNLSVV 272 (330)
Q Consensus 194 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~-l~~~~~~~~~ 272 (330)
+.+++..+...+-+++++.||||||.- +| ++++... -..+..+-+--|.|..|..+...+.. +...+|..+.
T Consensus 361 R~~ll~~ir~n~vvvivgETGSGKTTQ--l~--QyL~edG---Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VG 433 (1042)
T KOG0924|consen 361 RDQLLSVIRENQVVVIVGETGSGKTTQ--LA--QYLYEDG---YADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVG 433 (1042)
T ss_pred HHHHHHHHhhCcEEEEEecCCCCchhh--hH--HHHHhcc---cccCCeeeecCchHHHHHHHHHHHHHHhCCccccccc
Confidence 344444444566677889999999943 22 2222211 01233444555889888888776543 4333333322
Q ss_pred EE--ECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 273 CC--YGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 273 ~~--~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
.. |...+. ...-|=..|-|.|+.-.-. ...|.+..+||+||||.
T Consensus 434 YsIRFEdvT~--------~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHE 479 (1042)
T KOG0924|consen 434 YSIRFEDVTS--------EDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHE 479 (1042)
T ss_pred eEEEeeecCC--------CceeEEEeccchHHHHHhh-hhhhhheeEEEechhhh
Confidence 21 111111 1245667888887663211 23467888999999994
No 194
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.52 E-value=0.0089 Score=57.21 Aligned_cols=91 Identities=21% Similarity=0.137 Sum_probs=47.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCC-CeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDG-PMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~-~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
.|+.+++++|||+|||.+...-+...+.. .+ .++.+++ +...-.--++.++.|++..++.+..+..+....
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~-------~G~~~V~lit-~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~ 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMR-------FGASKVALLT-TDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHh-------cCCCeEEEEe-cccccccHHHHHHHHHHHcCCceEecCCcccHH
Confidence 46788899999999996554333332222 12 2444333 322211123344555555566666555554444
Q ss_pred HHHHHHhCCCeEEEEChHHH
Q psy17644 282 DQSKALELGAEIVVGTPGRI 301 (330)
Q Consensus 282 ~~~~~l~~~~dIiV~TP~~L 301 (330)
.....+....-|+|=|+++.
T Consensus 208 ~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 LALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred HHHHHhcCCCEEEEcCCCCC
Confidence 44444444444666677654
No 195
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.49 E-value=0.036 Score=59.87 Aligned_cols=75 Identities=16% Similarity=0.074 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhcC-CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAALS-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~-g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L 252 (330)
+++..+...... ...+++-|..++..+.. ++=+++.|..|+|||. ++-.+..+... .|.+++.++||---
T Consensus 367 v~~~~l~a~~~~-~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt--~l~~~~~~~e~------~G~~V~g~ApTgkA 437 (1102)
T PRK13826 367 VREAVLAATFAR-HARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTT--MMKAAREAWEA------AGYRVVGGALAGKA 437 (1102)
T ss_pred CCHHHHHHHHhc-CCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHH--HHHHHHHHHHH------cCCeEEEEcCcHHH
Confidence 344444433332 24689999999998864 4556677999999993 33344444432 47889999999777
Q ss_pred HHHHH
Q psy17644 253 SQQIY 257 (330)
Q Consensus 253 a~Qi~ 257 (330)
|..+.
T Consensus 438 A~~L~ 442 (1102)
T PRK13826 438 AEGLE 442 (1102)
T ss_pred HHHHH
Confidence 76543
No 196
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.47 E-value=0.013 Score=53.94 Aligned_cols=53 Identities=23% Similarity=0.328 Sum_probs=36.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCc-EEEEcCCCChhHHHHHHHHHHHHHhc
Q psy17644 160 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRD-IIGVAKTGSGKTGAFIWPMLVHIMDQ 232 (330)
Q Consensus 160 ~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d-~i~~a~TGsGKT~a~llp~l~~i~~~ 232 (330)
..+|..+.+|+++++++.+.+.+ . ..+- +++.+||||||| +.+..++.++-++
T Consensus 99 R~Ip~~i~~~e~LglP~i~~~~~-~------------------~~~GLILVTGpTGSGKS-TTlAamId~iN~~ 152 (353)
T COG2805 99 RLIPSKIPTLEELGLPPIVRELA-E------------------SPRGLILVTGPTGSGKS-TTLAAMIDYINKH 152 (353)
T ss_pred eccCccCCCHHHcCCCHHHHHHH-h------------------CCCceEEEeCCCCCcHH-HHHHHHHHHHhcc
Confidence 35688888999999888776632 1 1222 566699999998 4455677777654
No 197
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=96.46 E-value=0.02 Score=59.28 Aligned_cols=70 Identities=17% Similarity=0.104 Sum_probs=51.9
Q ss_pred CCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
+++-|++++.. ...++++.|..|||||.+ ++.-+.+++.... ....++|+|+.|+..|.++...+.++..
T Consensus 2 Ln~~Q~~av~~--~~~~~~V~Ag~GSGKT~~-L~~ri~~ll~~~~---~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 2 LNPQQQEAVEY--VTGPCLVLAGAGSGKTRV-ITNKIAYLIQNCG---YKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCHHHHHHHhC--CCCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 67899998865 346899999999999954 4444555554311 1346789999999999999999887653
No 198
>PRK11054 helD DNA helicase IV; Provisional
Probab=96.41 E-value=0.017 Score=59.74 Aligned_cols=75 Identities=21% Similarity=0.232 Sum_probs=53.2
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.....+++-|+.++-.. ..++++.|..|||||.+. +.-+.+++.... ..+.++|+|+.||..|..+.+.+....
T Consensus 192 ~e~~~L~~~Q~~av~~~--~~~~lV~agaGSGKT~vl-~~r~ayLl~~~~---~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 192 VESSPLNPSQARAVVNG--EDSLLVLAGAGSGKTSVL-VARAGWLLARGQ---AQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred ccCCCCCHHHHHHHhCC--CCCeEEEEeCCCCHHHHH-HHHHHHHHHhCC---CCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 33457899999988543 356888999999999543 334444443221 134689999999999999999887654
Q ss_pred c
Q psy17644 265 K 265 (330)
Q Consensus 265 ~ 265 (330)
.
T Consensus 266 g 266 (684)
T PRK11054 266 G 266 (684)
T ss_pred C
Confidence 3
No 199
>KOG0953|consensus
Probab=96.37 E-value=0.0022 Score=62.91 Aligned_cols=96 Identities=23% Similarity=0.253 Sum_probs=61.8
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA 286 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~ 286 (330)
++.+|||.||||. .+|+++.. ....++--|.|-||..+++.+... |+.+-++.|..-......
T Consensus 194 i~H~GPTNSGKTy----~ALqrl~~--------aksGvycGPLrLLA~EV~~r~na~----gipCdL~TGeE~~~~~~~- 256 (700)
T KOG0953|consen 194 IMHVGPTNSGKTY----RALQRLKS--------AKSGVYCGPLRLLAHEVYDRLNAL----GIPCDLLTGEERRFVLDN- 256 (700)
T ss_pred EEEeCCCCCchhH----HHHHHHhh--------hccceecchHHHHHHHHHHHhhhc----CCCccccccceeeecCCC-
Confidence 5556999999995 46677654 345699999999999999999887 444444444222111100
Q ss_pred HhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 287 LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 287 l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
.+.+..+-||-+... --...++.||||+++|-|
T Consensus 257 -~~~a~hvScTVEM~s--------v~~~yeVAViDEIQmm~D 289 (700)
T KOG0953|consen 257 -GNPAQHVSCTVEMVS--------VNTPYEVAVIDEIQMMRD 289 (700)
T ss_pred -CCcccceEEEEEEee--------cCCceEEEEehhHHhhcC
Confidence 112455666643221 124578999999998865
No 200
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=96.34 E-value=0.025 Score=58.34 Aligned_cols=68 Identities=29% Similarity=0.346 Sum_probs=51.4
Q ss_pred CCCCHHHHHhhhhhcC----C-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAALS----G-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~----g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
..|++.|..++..+.+ | +..++.+.+|||||+... .++.. .+..+|||+|+...|.|++..++.
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia-~l~~~----------~~r~vLIVt~~~~~A~~l~~dL~~ 79 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMA-NVIAR----------LQRPTLVLAHNKTLAAQLYSEFKE 79 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHH-HHHHH----------hCCCEEEEECCHHHHHHHHHHHHH
Confidence 3699999999988753 3 256788999999996532 12221 134689999999999999999999
Q ss_pred hccC
Q psy17644 263 FGKG 266 (330)
Q Consensus 263 l~~~ 266 (330)
|...
T Consensus 80 ~~~~ 83 (652)
T PRK05298 80 FFPE 83 (652)
T ss_pred hcCC
Confidence 8643
No 201
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.30 E-value=0.014 Score=53.19 Aligned_cols=120 Identities=17% Similarity=0.124 Sum_probs=57.5
Q ss_pred hhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCC
Q psy17644 199 PAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGG 278 (330)
Q Consensus 199 ~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~ 278 (330)
--+..|.-+++.|++|+|||. +++.++.++..+ .+.+|+++.- -.-..++...+........+......-+.
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~-l~~~~~~~~~~~------~g~~vl~iS~-E~~~~~~~~r~~~~~~~~~~~~~~~~~~~ 96 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTT-FLREYALDLITQ------HGVRVGTISL-EEPVVRTARRLLGQYAGKRLHLPDTVFIY 96 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHH-HHHHHHHHHHHh------cCceEEEEEc-ccCHHHHHHHHHHHHhCCCcccCCccccc
Confidence 344567788889999999994 444444444332 2567777753 22344444444332111121111000011
Q ss_pred chHHHH---HHHhCCCeEEE-E-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 279 SKWDQS---KALELGAEIVV-G-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 279 ~~~~~~---~~l~~~~dIiV-~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
...... ..+.....+++ - |+..+...+..-.. -..+++||||-.+.|.
T Consensus 97 ~~~~~~~~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~~~-~~~~~~vvID~l~~l~ 153 (271)
T cd01122 97 TLEEFDAAFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYMAV-SHGIQHIIIDNLSIMV 153 (271)
T ss_pred cHHHHHHHHHHhcCCCcEEEEcCCCccCHHHHHHHHHHHHh-cCCceEEEECCHHHHh
Confidence 111111 12221122222 1 45555555542211 1367899999987765
No 202
>KOG1001|consensus
Probab=96.25 E-value=0.019 Score=59.07 Aligned_cols=114 Identities=25% Similarity=0.204 Sum_probs=68.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCC-CCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKE-LEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ 283 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~-~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~ 283 (330)
+-.|+.--.|-|||...+.-++.+-..... .........|||||+ .+..||..++.+......+.+.+.+| ....
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~g---r~kd 228 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHG---RTKD 228 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecc---cccc
Confidence 345666778999997655444433221110 001234567999998 56688888886666555555555555 2222
Q ss_pred HHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 284 SKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 284 ~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
...+ ...+|||+||+.|.. .....-..-.+|+||||.+-
T Consensus 229 ~~el-~~~dVVltTy~il~~----~~l~~i~w~Riildea~~ik 267 (674)
T KOG1001|consen 229 KSEL-NSYDVVLTTYDILKN----SPLVKIKWLRIVLDEAHTIK 267 (674)
T ss_pred cchh-cCCceEEeeHHHhhc----ccccceeEEEEEeccccccC
Confidence 2223 346899999988874 11111345678999999875
No 203
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.18 E-value=0.031 Score=55.23 Aligned_cols=90 Identities=16% Similarity=0.077 Sum_probs=48.1
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE-EEccc-HHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL-ILAPT-RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL-il~Pt-r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
|+-+.++|+||+|||.+...-+-.+.... .+.++. |-+-+ |.-+ .+.++.|+...++.+..+..+....
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~------G~~kV~LI~~Dt~RigA---~EQLr~~AeilGVpv~~~~~~~Dl~ 326 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRH------GASKVALLTTDSYRIGG---HEQLRIYGKILGVPVHAVKDAADLR 326 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhc------CCCeEEEEeCCccchhH---HHHHHHHHHHhCCCeeccCCchhHH
Confidence 45577889999999965443332222221 112333 33333 3222 3445555555566555544444444
Q ss_pred HHHHHHhCCCeEEEEChHHHH
Q psy17644 282 DQSKALELGAEIVVGTPGRII 302 (330)
Q Consensus 282 ~~~~~l~~~~dIiV~TP~~L~ 302 (330)
.....+...-.|+|-|+++..
T Consensus 327 ~aL~~L~d~d~VLIDTaGr~~ 347 (484)
T PRK06995 327 LALSELRNKHIVLIDTIGMSQ 347 (484)
T ss_pred HHHHhccCCCeEEeCCCCcCh
Confidence 444455555578888998543
No 204
>KOG4150|consensus
Probab=96.16 E-value=0.003 Score=62.25 Aligned_cols=139 Identities=12% Similarity=-0.059 Sum_probs=98.7
Q ss_pred HHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q psy17644 182 LRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK 261 (330)
Q Consensus 182 l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~ 261 (330)
+.++.......+|..++..+-.|+++++.-.|.+||.++|.+.++...+.- .....+++.||.++++...+.+.
T Consensus 279 ~~~~~~E~~~~~~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~------~~s~~~~~~~~~~~~~~~~~~~~ 352 (1034)
T KOG4150|consen 279 LNKNTGESGIAISLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLC------HATNSLLPSEMVEHLRNGSKGQV 352 (1034)
T ss_pred HhcccccchhhhhHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcC------cccceecchhHHHHhhccCCceE
Confidence 445566777899999999999999999999999999999999888776553 23456888999998876433322
Q ss_pred Hhcc---CCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC----CCCCccEEEeeccccc
Q psy17644 262 RFGK---GYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT----KLNRVTFLVLDEADRM 326 (330)
Q Consensus 262 ~l~~---~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~----~l~~i~~lVvDEad~l 326 (330)
-... ....-++-.+.|.+........+.+..+|.+.|...+..+--+.. .+-...++++|++|.-
T Consensus 353 V~~~~I~~~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y 424 (1034)
T KOG4150|consen 353 VHVEVIKARKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALY 424 (1034)
T ss_pred EEEEehhhhhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeee
Confidence 1111 111234455667776666777778899999999998875532222 2445677888998854
No 205
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=96.14 E-value=0.017 Score=59.84 Aligned_cols=71 Identities=20% Similarity=0.124 Sum_probs=52.0
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
.+++-|++++... ...+++.|..|||||.+ ++.-+.+++.+.. -...++|+|+-|+..|..+...+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~g~~lV~AgpGSGKT~v-L~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRV-ITNKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHhcC---CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 3788999998753 46788999999999955 3444455554311 1245799999999999999998887643
No 206
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=96.09 E-value=0.008 Score=59.67 Aligned_cols=125 Identities=16% Similarity=0.107 Sum_probs=72.8
Q ss_pred HHHHHhhhhhcC---------CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 192 PIQAQAVPAALS---------GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 192 ~iQ~~~i~~~~~---------g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
|+|+-++-.++. .+.+++.-+-+.|||.....-++.+++-.. ..++.++++++++..|..+++.++.
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g----~~~~~i~~~A~~~~QA~~~f~~~~~ 76 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDG----EPGAEIYCAANTRDQAKIVFDEAKK 76 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCC----ccCceEEEEeCCHHHHHHHHHHHHH
Confidence 567777666651 246888888999999554444454544321 2478999999999999999999998
Q ss_pred hccCCCceEEEEECCCchHHHHHHHhC-CCeEEEEChHHHHHHHHcC--CCCCCCccEEEeecccccCc
Q psy17644 263 FGKGYNLSVVCCYGGGSKWDQSKALEL-GAEIVVGTPGRIIDMVKMG--ATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 263 l~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~--~~~l~~i~~lVvDEad~lld 328 (330)
+........... . .+..+. ...|.....+.++..+.+. ...=.+..++|+||+|.+-+
T Consensus 77 ~i~~~~~l~~~~-~-------~~~~~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~ 137 (477)
T PF03354_consen 77 MIEASPELRKRK-K-------PKIIKSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKD 137 (477)
T ss_pred HHHhChhhccch-h-------hhhhhhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCC
Confidence 876532211100 0 000000 1133332223333222221 12223578999999998753
No 207
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.99 E-value=0.049 Score=52.43 Aligned_cols=87 Identities=16% Similarity=0.142 Sum_probs=43.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc--cHH-HHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP--TRE-LSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P--tr~-La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
.+.++++|+||+|||.....-+ ..+.. .+.++.++.. .|. .+.| ++.++...++.+..+......
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA-~~L~~-------~GkkVglI~aDt~RiaAvEQ----Lk~yae~lgipv~v~~d~~~L 308 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMA-WQFHG-------KKKTVGFITTDHSRIGTVQQ----LQDYVKTIGFEVIAVRDEAAM 308 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHH-HHHHH-------cCCcEEEEecCCcchHHHHH----HHHHhhhcCCcEEecCCHHHH
Confidence 3567888999999994433222 23322 3455555443 342 2333 334444445555444322222
Q ss_pred HHHHHHHhC--CCe-EEEEChHHHH
Q psy17644 281 WDQSKALEL--GAE-IVVGTPGRII 302 (330)
Q Consensus 281 ~~~~~~l~~--~~d-IiV~TP~~L~ 302 (330)
......++. ++| |||=|||+..
T Consensus 309 ~~aL~~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 309 TRALTYFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHHHHhccCCCEEEEeCccccC
Confidence 222333332 344 6677888753
No 208
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.99 E-value=0.027 Score=58.83 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=54.3
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
..+++-|++++... ...+++.|..|||||.+ +..-+.+++.+.. -...++|+|+-|+..|..+.+.+.++..
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~-L~~Ria~Li~~~~---v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 3 DGLNDKQREAVAAP--PGNLLVLAGAGSGKTRV-LTHRIAWLLSVEN---ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred cccCHHHHHHHcCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35889999998653 45799999999999954 4444555555321 1345889999999999999999888754
No 209
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=95.93 E-value=0.026 Score=55.15 Aligned_cols=32 Identities=22% Similarity=0.179 Sum_probs=25.2
Q ss_pred CCHHHHHhhhhhcCCCcEEEEcCCCChhHHHH
Q psy17644 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~ 221 (330)
+-.....++..+..++++++.+++|+|||...
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA 211 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVA 211 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 34455666777778999999999999999544
No 210
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.81 E-value=0.029 Score=52.76 Aligned_cols=45 Identities=29% Similarity=0.332 Sum_probs=29.8
Q ss_pred HHHCCCCCCCHHHHHhhhhhc-CCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 182 LRKCEYTSPTPIQAQAVPAAL-SGRDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 182 l~~~~~~~pt~iQ~~~i~~~~-~g~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
+...|. +++.|...+..+. .+++++++|+|||||| +++-.++..+
T Consensus 123 lv~~g~--~~~~~~~~L~~~v~~~~nilI~G~tGSGKT-Tll~aL~~~i 168 (323)
T PRK13833 123 YVTSKI--MTEAQASVIRSAIDSRLNIVISGGTGSGKT-TLANAVIAEI 168 (323)
T ss_pred HHHcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHH
Confidence 344444 5577776665554 6678999999999999 3334444444
No 211
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.80 E-value=0.091 Score=51.24 Aligned_cols=86 Identities=19% Similarity=0.160 Sum_probs=45.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc--cHHHHHHHHHHHHHhccCCCceEEEEECCCchH--
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP--TRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW-- 281 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P--tr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~-- 281 (330)
-+++++++|+|||.+..--+ +.+.. .|.+|++++- .|.-|.. +++.++...++.+...+.+....
T Consensus 102 vi~lvG~~GvGKTTtaaKLA--~~l~~------~G~kV~lV~~D~~R~aA~e---QLk~~a~~~~vp~~~~~~~~dp~~i 170 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLA--YYYQR------KGFKPCLVCADTFRAGAFD---QLKQNATKARIPFYGSYTESDPVKI 170 (429)
T ss_pred EEEEECCCCCCHHHHHHHHH--HHHHH------CCCCEEEEcCcccchhHHH---HHHHHhhccCCeEEeecCCCCHHHH
Confidence 46677999999984433211 22222 2456666553 3544443 34445555566665555444321
Q ss_pred --HHHHHHh-CCCe-EEEEChHHHH
Q psy17644 282 --DQSKALE-LGAE-IVVGTPGRII 302 (330)
Q Consensus 282 --~~~~~l~-~~~d-IiV~TP~~L~ 302 (330)
.....++ .++| |||=||+++.
T Consensus 171 ~~~~l~~~~~~~~DvViIDTaGr~~ 195 (429)
T TIGR01425 171 ASEGVEKFKKENFDIIIVDTSGRHK 195 (429)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCc
Confidence 1122222 3556 5677998873
No 212
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=95.75 E-value=0.047 Score=60.38 Aligned_cols=121 Identities=18% Similarity=0.166 Sum_probs=74.9
Q ss_pred CCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC-CC
Q psy17644 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG-YN 268 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~-~~ 268 (330)
.|+-|.++|. ..++++++.|.-|||||.+.+--++..+... ..-.++|+|+=|+..|..+...+++-... ..
T Consensus 2 ~t~~Q~~ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~-----~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~~ 74 (1232)
T TIGR02785 2 WTDEQWQAIY--TRGQNILVSASAGSGKTAVLVERIIKKILRG-----VDIDRLLVVTFTNAAAREMKERIEEALQKALQ 74 (1232)
T ss_pred CCHHHHHHHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcC-----CCHhhEEEEeccHHHHHHHHHHHHHHHHHHHh
Confidence 5889999997 3688999999999999977666666665532 12246899999999999988887764322 11
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHH-HHcCCC--CCCCccEEEeecccc
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDM-VKMGAT--KLNRVTFLVLDEADR 325 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~-l~~~~~--~l~~i~~lVvDEad~ 325 (330)
-.. ......+.+..-...-|+|-..++.- +++... ++. -.+=|.||...
T Consensus 75 ~~p-------~~~~L~~q~~~~~~~~i~Tihsf~~~~~~~~~~~l~ld-P~F~i~de~e~ 126 (1232)
T TIGR02785 75 QEP-------NSKHLRRQLALLNTANISTLHSFCLKVIRKHYYLLDLD-PSFRILTDTEQ 126 (1232)
T ss_pred cCc-------hhHHHHHHHhhccCCeEeeHHHHHHHHHHHhhhhcCCC-CCceeCCHHHH
Confidence 000 11111222222235578998887764 443222 121 13345777653
No 213
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.68 E-value=0.031 Score=58.38 Aligned_cols=72 Identities=18% Similarity=0.178 Sum_probs=53.3
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
..+++-|++++... ...+++.|..|||||.+ +..-+.+++.... -...++|+|+-|+..|..+.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~v-l~~Ria~Li~~~~---v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 8 DSLNDKQREAVAAP--LGNMLVLAGAGSGKTRV-LVHRIAWLMQVEN---ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HhcCHHHHHHHhCC--CCCEEEEecCCCCHHHH-HHHHHHHHHHcCC---CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 35889999998754 35799999999999954 3344445554321 1345789999999999999999888754
No 214
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.68 E-value=0.13 Score=47.18 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=44.6
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA--PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~--Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
.+-+++++++|+|||.+..--+ .++.. .+.+++++. +.|.-+.+ .++.++...++.+.....+.+..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA-~~l~~-------~g~~V~li~~D~~r~~a~~---ql~~~~~~~~i~~~~~~~~~dp~ 140 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLA-NKLKK-------QGKSVLLAAGDTFRAAAIE---QLEEWAKRLGVDVIKQKEGADPA 140 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHH-HHHHh-------cCCEEEEEeCCCCCHHHHH---HHHHHHHhCCeEEEeCCCCCCHH
Confidence 3456777999999995433222 22222 355666665 33444332 33344444454443322222221
Q ss_pred HH-----HHHHhCCCe-EEEEChHHHH
Q psy17644 282 DQ-----SKALELGAE-IVVGTPGRII 302 (330)
Q Consensus 282 ~~-----~~~l~~~~d-IiV~TP~~L~ 302 (330)
.. ......+++ |||=||+++.
T Consensus 141 ~~~~~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 141 AVAFDAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCCc
Confidence 11 112235567 7788998874
No 215
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=95.61 E-value=0.033 Score=52.31 Aligned_cols=48 Identities=27% Similarity=0.363 Sum_probs=32.4
Q ss_pred HHHHHHCCCCCCCHHHHHhhhhh-cCCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 179 MKALRKCEYTSPTPIQAQAVPAA-LSGRDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 179 ~~~l~~~~~~~pt~iQ~~~i~~~-~~g~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
+..+...|+ +++.|...+..+ ..+++++++|+|||||| +++-.++..+
T Consensus 124 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~aL~~~~ 172 (319)
T PRK13894 124 LDQYVERGI--MTAAQREAIIAAVRAHRNILVIGGTGSGKT-TLVNAIINEM 172 (319)
T ss_pred HHHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHhh
Confidence 344445554 457777777654 47789999999999999 4444455444
No 216
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.59 E-value=0.053 Score=44.52 Aligned_cols=38 Identities=26% Similarity=0.357 Sum_probs=22.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L 252 (330)
+++.|++|+|||.... -++..+.. .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~-~i~~~~~~-------~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLAL-QLALNIAT-------KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHH-HHHHHHHh-------cCCEEEEEECCcch
Confidence 5788999999994333 22333222 35566666654333
No 217
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=95.58 E-value=0.078 Score=55.48 Aligned_cols=72 Identities=19% Similarity=0.254 Sum_probs=52.9
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
..++|-|.+++... ...+++.|..|||||.+.+ .-+.+++..... ..-++|+|+-|+..|..+.+.+.+++.
T Consensus 3 ~~Ln~~Q~~av~~~--~g~~lV~AgaGSGKT~~l~-~ria~Li~~~~i---~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 3 AHLNPEQREAVKTT--EGPLLIMAGAGSGKTRVLT-HRIAHLIAEKNV---APWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred cccCHHHHHHHhCC--CCCEEEEeCCCCCHHHHHH-HHHHHHHHcCCC---CHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 35789999998753 4679999999999995433 334455543211 235789999999999999999887754
No 218
>KOG0298|consensus
Probab=95.51 E-value=0.022 Score=60.97 Aligned_cols=100 Identities=18% Similarity=0.178 Sum_probs=63.6
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCC----------CCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEE
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKE----------LEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVV 272 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~----------~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~ 272 (330)
.|++++..-..|.|||.+-+.-.+.+..+... ........+|||+|. ++..||+.++.+-+... +++.
T Consensus 373 ~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~-lKv~ 450 (1394)
T KOG0298|consen 373 HGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSL-LKVL 450 (1394)
T ss_pred CCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhcccc-ceEE
Confidence 45677888889999997766555554322111 011234677999998 56699999999877653 5666
Q ss_pred EEECCCchHH-HHHHHhCCCeEEEEChHHHHHHH
Q psy17644 273 CCYGGGSKWD-QSKALELGAEIVVGTPGRIIDMV 305 (330)
Q Consensus 273 ~~~gg~~~~~-~~~~l~~~~dIiV~TP~~L~~~l 305 (330)
..+|-..... +...+ -.+|||++|+..|..=+
T Consensus 451 ~Y~Girk~~~~~~~el-~~yDIVlTtYdiLr~El 483 (1394)
T KOG0298|consen 451 LYFGIRKTFWLSPFEL-LQYDIVLTTYDILRNEL 483 (1394)
T ss_pred EEechhhhcccCchhh-hccCEEEeehHHHHhHh
Confidence 5555221110 11122 24899999999997744
No 219
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.51 E-value=0.096 Score=60.33 Aligned_cols=63 Identities=24% Similarity=0.283 Sum_probs=47.0
Q ss_pred CCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 189 SPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
.+++-|+.++..++.. +=.++.++.|+||| +++-.+..+... .|.++++++||...+.++.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKT--t~l~~l~~~~~~------~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGST--EIAQLLLHLASE------QGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHH--HHHHHHHHHHHh------cCCeEEEEeCCHHHHHHHHHH
Confidence 5789999999998865 45667799999999 334444455443 478899999998877666554
No 220
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=95.50 E-value=0.024 Score=50.61 Aligned_cols=48 Identities=29% Similarity=0.364 Sum_probs=31.0
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc---cHHHHHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP---TRELSQQI 256 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P---tr~La~Qi 256 (330)
..|.=+++.|++|+||| +|++-++.+...+ .+..+++++. ..+++.++
T Consensus 11 ~~G~l~lI~G~~G~GKT-~~~~~~~~~~~~~------~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 11 QPGDLIIIAARPSMGKT-AFALNIAENIAKK------QGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCCeEEEEEeCCCCCHH-HHHHHHHHHHHHh------CCCceEEEeCCCCHHHHHHHH
Confidence 45667888899999999 5555555555442 2567788773 34444443
No 221
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.48 E-value=0.036 Score=52.28 Aligned_cols=64 Identities=19% Similarity=0.123 Sum_probs=46.5
Q ss_pred CCCCCCCHHHHHhhhhhcCCC--cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q psy17644 185 CEYTSPTPIQAQAVPAALSGR--DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELS 253 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~--d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La 253 (330)
.|+..-...|..|+.+++.-. =|.+.++.|||||+..+.+.|..++.++. -.++||--||..+.
T Consensus 224 wGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~-----y~KiiVtRp~vpvG 289 (436)
T COG1875 224 WGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKR-----YRKIIVTRPTVPVG 289 (436)
T ss_pred hccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhh-----hceEEEecCCcCcc
Confidence 466666678999999888543 24555999999999999999988887643 34666666765543
No 222
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.34 E-value=0.045 Score=50.54 Aligned_cols=19 Identities=42% Similarity=0.473 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~ 221 (330)
.++-+++++|||+|||.+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~ 211 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTL 211 (282)
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3456888899999999443
No 223
>KOG1015|consensus
Probab=95.31 E-value=0.069 Score=55.86 Aligned_cols=116 Identities=20% Similarity=0.153 Sum_probs=63.2
Q ss_pred CCcEEEEcCCCChhHHH---HHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC----CceEEEEEC
Q psy17644 204 GRDIIGVAKTGSGKTGA---FIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY----NLSVVCCYG 276 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a---~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~----~~~~~~~~g 276 (330)
|-.+|+.--.|-|||+- |+--+|.+. + ..-.+||||||.. .+..|+.+|.+|.... .+.+..+-.
T Consensus 696 GsGcILAHcMGLGKTlQVvtflhTvL~c~---k----lg~ktaLvV~PlN-t~~NW~~EFekWm~~~e~~~~leV~eL~~ 767 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQVVTFLHTVLLCD---K----LGFKTALVVCPLN-TALNWMNEFEKWMEGLEDDEKLEVSELAT 767 (1567)
T ss_pred CcchHHHHhhcccceehhhHHHHHHHHhh---c----cCCceEEEEcchH-HHHHHHHHHHHhcccccccccceeehhhh
Confidence 33455555579999943 333333332 1 2356899999985 4588999999997742 233333322
Q ss_pred CCchHHHHHHHh---CCCeEEEEChHHHHHHHHcCCCC-------------CCCccEEEeecccccC
Q psy17644 277 GGSKWDQSKALE---LGAEIVVGTPGRIIDMVKMGATK-------------LNRVTFLVLDEADRMF 327 (330)
Q Consensus 277 g~~~~~~~~~l~---~~~dIiV~TP~~L~~~l~~~~~~-------------l~~i~~lVvDEad~ll 327 (330)
-.........|. ....|.|.-+..+..+-..+... -..-++||.||+|.|-
T Consensus 768 vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLK 834 (1567)
T KOG1015|consen 768 VKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILK 834 (1567)
T ss_pred ccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhc
Confidence 222222222222 22255555555554443211111 1235899999999874
No 224
>PRK08727 hypothetical protein; Validated
Probab=95.27 E-value=0.07 Score=47.74 Aligned_cols=50 Identities=18% Similarity=0.197 Sum_probs=28.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.-+++.|++|+|||.. +.++.+-..+ .+.+++++ |..++...+...+..+
T Consensus 42 ~~l~l~G~~G~GKThL--~~a~~~~~~~------~~~~~~y~-~~~~~~~~~~~~~~~l 91 (233)
T PRK08727 42 DWLYLSGPAGTGKTHL--ALALCAAAEQ------AGRSSAYL-PLQAAAGRLRDALEAL 91 (233)
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHHHH------cCCcEEEE-eHHHhhhhHHHHHHHH
Confidence 3488899999999933 2232222222 35667765 4445555444444444
No 225
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.26 E-value=0.19 Score=45.38 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=25.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQ 255 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Q 255 (330)
..+++.+++|+|||.... .+.+++.. .+..++++ +..+|...
T Consensus 100 ~~~~l~G~~GtGKThLa~-aia~~l~~-------~g~~v~~i-t~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAA-AICNELLL-------RGKSVLII-TVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHh-------cCCeEEEE-EHHHHHHH
Confidence 478899999999994332 34444443 24556555 44444433
No 226
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.094 Score=54.58 Aligned_cols=88 Identities=18% Similarity=0.134 Sum_probs=43.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCC-CeEEEEcc-c-HHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDG-PMGLILAP-T-RELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~-~~vLil~P-t-r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
|+=+.+++|||+|||.+...-+...... .+ .++.++.- | |.-+ .+.++.++...++.+..+......
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-------~G~kkV~lit~Dt~RigA---~eQL~~~a~~~gvpv~~~~~~~~l 254 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-------EGADQLALLTTDSFRIGA---LEQLRIYGRILGVPVHAVKDAADL 254 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-------cCCCeEEEecCcccchHH---HHHHHHHHHhCCCCccccCCHHHH
Confidence 4456788999999996554333322222 23 24444443 2 2222 334455555555555443332222
Q ss_pred HHHHHHHhCCCeEEEEChHHH
Q psy17644 281 WDQSKALELGAEIVVGTPGRI 301 (330)
Q Consensus 281 ~~~~~~l~~~~dIiV~TP~~L 301 (330)
......++..--|||=|+++.
T Consensus 255 ~~al~~~~~~D~VLIDTAGRs 275 (767)
T PRK14723 255 RFALAALGDKHLVLIDTVGMS 275 (767)
T ss_pred HHHHHHhcCCCEEEEeCCCCC
Confidence 222333333334677788854
No 227
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.24 E-value=0.069 Score=51.50 Aligned_cols=91 Identities=16% Similarity=0.103 Sum_probs=44.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc-c-cHHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA-P-TRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~-P-tr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
++-++++|+||+|||.+..--+........ ..+.+|.+++ - .|.-+..+ ++.++...++.+..........
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~----~~g~~V~lit~Dt~R~aa~eQ---L~~~a~~lgvpv~~~~~~~~l~ 246 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSD----DKSLNIKIITIDNYRIGAKKQ---IQTYGDIMGIPVKAIESFKDLK 246 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhc----cCCCeEEEEeccCccHHHHHH---HHHHhhcCCcceEeeCcHHHHH
Confidence 456888899999999554322222221110 1234444443 3 34444332 5566665666554433322222
Q ss_pred HHHHHHhCCCe-EEEEChHHHH
Q psy17644 282 DQSKALELGAE-IVVGTPGRII 302 (330)
Q Consensus 282 ~~~~~l~~~~d-IiV~TP~~L~ 302 (330)
.....+. +++ |||=|++++.
T Consensus 247 ~~L~~~~-~~DlVLIDTaGr~~ 267 (388)
T PRK12723 247 EEITQSK-DFDLVLVDTIGKSP 267 (388)
T ss_pred HHHHHhC-CCCEEEEcCCCCCc
Confidence 2223333 345 5566877654
No 228
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=95.20 E-value=0.046 Score=51.25 Aligned_cols=33 Identities=30% Similarity=0.299 Sum_probs=28.8
Q ss_pred CCCCCCHHHHHhhhhhcCCC-cEEEEcCCCChhH
Q psy17644 186 EYTSPTPIQAQAVPAALSGR-DIIGVAKTGSGKT 218 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~-d~i~~a~TGsGKT 218 (330)
.|...++-|...+-.+..++ ++++++.||||||
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKT 187 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKT 187 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHH
Confidence 45678899999988888776 9999999999999
No 229
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.11 E-value=0.13 Score=50.66 Aligned_cols=51 Identities=10% Similarity=0.095 Sum_probs=30.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK 261 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~ 261 (330)
+..+++.|++|+||| .++.++.+.+... ..+.+++++.. .++...+...+.
T Consensus 141 ~npl~i~G~~G~GKT--HLl~Ai~~~l~~~----~~~~~v~yv~~-~~f~~~~~~~l~ 191 (450)
T PRK14087 141 YNPLFIYGESGMGKT--HLLKAAKNYIESN----FSDLKVSYMSG-DEFARKAVDILQ 191 (450)
T ss_pred cCceEEECCCCCcHH--HHHHHHHHHHHHh----CCCCeEEEEEH-HHHHHHHHHHHH
Confidence 356889999999999 4444444433321 13456666544 566666655543
No 230
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.11 E-value=0.065 Score=51.43 Aligned_cols=89 Identities=21% Similarity=0.194 Sum_probs=53.6
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHH-HhcCCCCCCCCCeEEEEccc-HHHHHHHHHHHHHhccCCCceEEEEECCCc
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHI-MDQKELEPGDGPMGLILAPT-RELSQQIYNEAKRFGKGYNLSVVCCYGGGS 279 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i-~~~~~~~~~~~~~vLil~Pt-r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~ 279 (330)
.+++-+.++||||.|||.+..=-+.... ... +...+||-+-| |-=| ++.++.+++-+++.+..++....
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~------~~kVaiITtDtYRIGA---~EQLk~Ya~im~vp~~vv~~~~e 271 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKK------KKKVAIITTDTYRIGA---VEQLKTYADIMGVPLEVVYSPKE 271 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhcc------CcceEEEEeccchhhH---HHHHHHHHHHhCCceEEecCHHH
Confidence 4588899999999999954332222222 221 23345665555 4333 34456666666778887877766
Q ss_pred hHHHHHHHhCCCeEEEEChH
Q psy17644 280 KWDQSKALELGAEIVVGTPG 299 (330)
Q Consensus 280 ~~~~~~~l~~~~dIiV~TP~ 299 (330)
.......+...-.|+|=|-|
T Consensus 272 l~~ai~~l~~~d~ILVDTaG 291 (407)
T COG1419 272 LAEAIEALRDCDVILVDTAG 291 (407)
T ss_pred HHHHHHHhhcCCEEEEeCCC
Confidence 66666666664445566654
No 231
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.01 E-value=0.077 Score=49.40 Aligned_cols=47 Identities=28% Similarity=0.362 Sum_probs=29.0
Q ss_pred HHHHHCCCCCCCHHHHHhhhh-hcCCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 180 KALRKCEYTSPTPIQAQAVPA-ALSGRDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 180 ~~l~~~~~~~pt~iQ~~~i~~-~~~g~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
..+.+.|. +++.|...+.. +..+++++++|+|||||| +++-.++..+
T Consensus 109 ~~l~~~g~--~~~~~~~~L~~~v~~~~~ilI~G~tGSGKT-Tll~al~~~i 156 (299)
T TIGR02782 109 DDYVEAGI--MTAAQRDVLREAVLARKNILVVGGTGSGKT-TLANALLAEI 156 (299)
T ss_pred HHHHhcCC--CCHHHHHHHHHHHHcCCeEEEECCCCCCHH-HHHHHHHHHh
Confidence 34444443 44555555544 446679999999999999 3333444444
No 232
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.91 E-value=0.12 Score=50.52 Aligned_cols=88 Identities=19% Similarity=0.172 Sum_probs=42.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc--cHHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP--TRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P--tr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
.|+-+++++|||+|||.+.+--+....... .+.+|.+|.- .|.-+ ...++.++...++.+..+......
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~------~g~~V~li~~D~~r~~a---~eqL~~~a~~~~vp~~~~~~~~~l 290 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY------GKKKVALITLDTYRIGA---VEQLKTYAKIMGIPVEVVYDPKEL 290 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc------CCCeEEEEECCccHHHH---HHHHHHHHHHhCCceEccCCHHhH
Confidence 366788889999999954332222221111 2345554442 23322 233444444445554444433322
Q ss_pred HHHHHHHhCCCe-EEEEChHH
Q psy17644 281 WDQSKALELGAE-IVVGTPGR 300 (330)
Q Consensus 281 ~~~~~~l~~~~d-IiV~TP~~ 300 (330)
......+. +++ |||=||++
T Consensus 291 ~~~l~~~~-~~DlVlIDt~G~ 310 (424)
T PRK05703 291 AKALEQLR-DCDVILIDTAGR 310 (424)
T ss_pred HHHHHHhC-CCCEEEEeCCCC
Confidence 22233333 345 66667754
No 233
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.90 E-value=0.17 Score=53.39 Aligned_cols=16 Identities=31% Similarity=0.638 Sum_probs=12.5
Q ss_pred CCccEEEeecccccCc
Q psy17644 313 NRVTFLVLDEADRMFD 328 (330)
Q Consensus 313 ~~i~~lVvDEad~lld 328 (330)
..+.+|||||+|.|..
T Consensus 868 r~v~IIILDEID~L~k 883 (1164)
T PTZ00112 868 RNVSILIIDEIDYLIT 883 (1164)
T ss_pred ccceEEEeehHhhhCc
Confidence 4567899999998863
No 234
>PRK05973 replicative DNA helicase; Provisional
Probab=94.89 E-value=0.12 Score=46.36 Aligned_cols=67 Identities=21% Similarity=0.334 Sum_probs=43.3
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
..+||... +..-+..|.-+++.|++|+||| +|++.++....+ +|.+++|++- -+-..|+...+..++
T Consensus 49 ~~~~p~~~-l~GGl~~Gsl~LIaG~PG~GKT-~lalqfa~~~a~-------~Ge~vlyfSl-Ees~~~i~~R~~s~g 115 (237)
T PRK05973 49 AATTPAEE-LFSQLKPGDLVLLGARPGHGKT-LLGLELAVEAMK-------SGRTGVFFTL-EYTEQDVRDRLRALG 115 (237)
T ss_pred cCCCCHHH-hcCCCCCCCEEEEEeCCCCCHH-HHHHHHHHHHHh-------cCCeEEEEEE-eCCHHHHHHHHHHcC
Confidence 45677443 5555667778888899999999 455555544443 3566777743 344567777777663
No 235
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.86 E-value=0.17 Score=50.56 Aligned_cols=20 Identities=40% Similarity=0.415 Sum_probs=16.0
Q ss_pred cCCCcEEEEcCCCChhHHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~ 221 (330)
..|+-++++|+||+|||...
T Consensus 348 ~~G~vIaLVGPtGvGKTTta 367 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTI 367 (559)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35678888899999999554
No 236
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.83 E-value=0.073 Score=49.24 Aligned_cols=53 Identities=13% Similarity=0.220 Sum_probs=35.4
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC----CCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE----PGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~----~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
.+++++|+|+.|||. ++.++....... ...-|.++|-+|...-....+..+-.
T Consensus 62 p~lLivG~snnGKT~-----Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~ 118 (302)
T PF05621_consen 62 PNLLIVGDSNNGKTM-----IIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILE 118 (302)
T ss_pred CceEEecCCCCcHHH-----HHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHH
Confidence 579999999999995 334444332211 11237888888988877777777443
No 237
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.83 E-value=0.15 Score=48.88 Aligned_cols=88 Identities=14% Similarity=0.179 Sum_probs=42.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc--cHHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP--TRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P--tr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
.++-+++++|+|+|||....--+. ++.. .+.++.+++- .|.-| ...++.++...++.+.........
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~-~l~~-------~g~~V~lItaDtyR~gA---veQLk~yae~lgvpv~~~~dp~dL 273 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGW-QLLK-------QNRTVGFITTDTFRSGA---VEQFQGYADKLDVELIVATSPAEL 273 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHH-------cCCeEEEEeCCccCccH---HHHHHHHhhcCCCCEEecCCHHHH
Confidence 466788889999999954332222 2222 2344544442 34322 223444544445544432221111
Q ss_pred HHHHHHHh--CCCe-EEEEChHHH
Q psy17644 281 WDQSKALE--LGAE-IVVGTPGRI 301 (330)
Q Consensus 281 ~~~~~~l~--~~~d-IiV~TP~~L 301 (330)
......++ .+++ |||=|||+.
T Consensus 274 ~~al~~l~~~~~~D~VLIDTAGr~ 297 (407)
T PRK12726 274 EEAVQYMTYVNCVDHILIDTVGRN 297 (407)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCC
Confidence 22222232 2344 677899884
No 238
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=94.81 E-value=0.12 Score=46.88 Aligned_cols=110 Identities=17% Similarity=0.161 Sum_probs=58.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc---HHHHHHHHHHHHHhccCCCceEEEEECCC-c
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT---RELSQQIYNEAKRFGKGYNLSVVCCYGGG-S 279 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt---r~La~Qi~~~~~~l~~~~~~~~~~~~gg~-~ 279 (330)
|.=+++.|+||.||| +|++.+..++... .+..|+|++.- .+++..+....... . ...+..|. .
T Consensus 19 g~L~vi~a~pg~GKT-~~~l~ia~~~a~~------~~~~vly~SlEm~~~~l~~R~la~~s~v----~--~~~i~~g~l~ 85 (259)
T PF03796_consen 19 GELTVIAARPGVGKT-AFALQIALNAALN------GGYPVLYFSLEMSEEELAARLLARLSGV----P--YNKIRSGDLS 85 (259)
T ss_dssp T-EEEEEESTTSSHH-HHHHHHHHHHHHT------TSSEEEEEESSS-HHHHHHHHHHHHHTS----T--HHHHHCCGCH
T ss_pred CcEEEEEecccCCch-HHHHHHHHHHHHh------cCCeEEEEcCCCCHHHHHHHHHHHhhcc----h--hhhhhccccC
Confidence 344566699999999 5666666666553 24678888752 44444444333222 1 11111122 1
Q ss_pred hHHH------HHHHhCCCeEEE-E----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 280 KWDQ------SKALELGAEIVV-G----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 280 ~~~~------~~~l~~~~dIiV-~----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
..+. ...+.. ..+.| . |+..+...+..-......+.+||||-.+.|-
T Consensus 86 ~~e~~~~~~~~~~l~~-~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~ 143 (259)
T PF03796_consen 86 DEEFERLQAAAEKLSD-LPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLK 143 (259)
T ss_dssp HHHHHHHHHHHHHHHT-SEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSB
T ss_pred HHHHHHHHHHHHHHhh-CcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhc
Confidence 1111 122333 34443 3 4455665554322223688999999999874
No 239
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=94.81 E-value=0.052 Score=52.48 Aligned_cols=108 Identities=12% Similarity=0.130 Sum_probs=61.8
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH-HHHHHHHHHHHhccCCCceEEEEECCCchHHHH
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE-LSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS 284 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~-La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~ 284 (330)
-.++.+..|||||.+.++-++..++... .+.++|++.+|.. |..-++..+.......++....-...... .+
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~-----~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~--~i 75 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK-----KQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM--EI 75 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC-----CCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc--EE
Confidence 3577799999999888888887777641 3578899999876 66666666766554444432111111100 00
Q ss_pred HHHhC-CCeEEEECh-HHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 285 KALEL-GAEIVVGTP-GRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 285 ~~l~~-~~dIiV~TP-~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
.+.. +..|++..- .....+ .....+.++.+|||..+
T Consensus 76 -~~~~~g~~i~f~g~~d~~~~i-----k~~~~~~~~~idEa~~~ 113 (396)
T TIGR01547 76 -KILNTGKKFIFKGLNDKPNKL-----KSGAGIAIIWFEEASQL 113 (396)
T ss_pred -EecCCCeEEEeecccCChhHh-----hCcceeeeehhhhhhhc
Confidence 1112 445555432 111111 11234688999998765
No 240
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=94.80 E-value=0.017 Score=49.17 Aligned_cols=50 Identities=18% Similarity=0.195 Sum_probs=33.0
Q ss_pred chHHHHHHHhCCCeEEEEChHHHHHHHHcCCC--CCCCccEEEeecccccCc
Q psy17644 279 SKWDQSKALELGAEIVVGTPGRIIDMVKMGAT--KLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 279 ~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--~l~~i~~lVvDEad~lld 328 (330)
......+.....++|||++..-|++-..+... ....-.+|||||||.|.+
T Consensus 108 CPY~~~r~~~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 108 CPYYLARELAKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp -HHHHHHHCGGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred ChhHHHHHhcccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 44455666667799999999988775432221 123447999999999875
No 241
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.80 E-value=0.07 Score=51.93 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=46.1
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc-HHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT-RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt-r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
.|+-+.++|+||+|||.....-+-..++... .....+|.+.+ |.-+ ++.+..++..+++.+..+.......
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-----~~~v~~i~~d~~riga---lEQL~~~a~ilGvp~~~v~~~~dl~ 261 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHG-----ADKVALLTTDSYRIGG---HEQLRIYGKLLGVSVRSIKDIADLQ 261 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-----CCeEEEEecCCcchhH---HHHHHHHHHHcCCceecCCCHHHHH
Confidence 4556777899999999554432222322211 12234555555 3222 2334445554555555444433333
Q ss_pred HHHHHHhCCCeEEEEChHHHH
Q psy17644 282 DQSKALELGAEIVVGTPGRII 302 (330)
Q Consensus 282 ~~~~~l~~~~dIiV~TP~~L~ 302 (330)
.....+...-.|+|-|+|+..
T Consensus 262 ~al~~l~~~d~VLIDTaGrsq 282 (420)
T PRK14721 262 LMLHELRGKHMVLIDTVGMSQ 282 (420)
T ss_pred HHHHHhcCCCEEEecCCCCCc
Confidence 333334433456677776543
No 242
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=94.70 E-value=0.23 Score=50.84 Aligned_cols=73 Identities=11% Similarity=0.120 Sum_probs=50.4
Q ss_pred CCCCCHHHHHhhhhhc---CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 187 YTSPTPIQAQAVPAAL---SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~---~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..-|+|.-.+-|..++ ..+-.++.+|-|-|||.+..+.++ ++... .+.+++|.+|...-+.+++..++++
T Consensus 167 p~~~~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~-~La~f------~Gi~IlvTAH~~~ts~evF~rv~~~ 239 (752)
T PHA03333 167 PEAPSPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILA-AMISF------LEIDIVVQAQRKTMCLTLYNRVETV 239 (752)
T ss_pred cCCCChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHH-HHHHh------cCCeEEEECCChhhHHHHHHHHHHH
Confidence 3445555444455444 557788889999999965443333 33221 3578999999999999999998887
Q ss_pred ccC
Q psy17644 264 GKG 266 (330)
Q Consensus 264 ~~~ 266 (330)
...
T Consensus 240 le~ 242 (752)
T PHA03333 240 VHA 242 (752)
T ss_pred HHH
Confidence 763
No 243
>PRK11823 DNA repair protein RadA; Provisional
Probab=94.63 E-value=0.24 Score=48.81 Aligned_cols=53 Identities=23% Similarity=0.329 Sum_probs=34.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.-+++.+++|+|||. +++-++..+.+ .+.++||+. +.+...|+...+.+++
T Consensus 79 ~Gs~~lI~G~pG~GKTt-L~lq~a~~~a~-------~g~~vlYvs-~Ees~~qi~~ra~rlg 131 (446)
T PRK11823 79 PGSVVLIGGDPGIGKST-LLLQVAARLAA-------AGGKVLYVS-GEESASQIKLRAERLG 131 (446)
T ss_pred CCEEEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEE-ccccHHHHHHHHHHcC
Confidence 45667788999999994 44444444332 356788876 4456677777776664
No 244
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=94.44 E-value=0.34 Score=42.92 Aligned_cols=52 Identities=21% Similarity=0.239 Sum_probs=31.0
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.|.-+++.+++|+|||.. ++.++.+.+. ++..++++.- .+...++...++.+
T Consensus 19 ~G~~~~i~G~~G~GKT~l-~~~~~~~~~~-------~g~~~~~is~-e~~~~~i~~~~~~~ 70 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIF-CLHFAYKGLR-------DGDPVIYVTT-EESRESIIRQAAQF 70 (229)
T ss_pred CCeEEEEECCCCCChHHH-HHHHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHHh
Confidence 567888899999999943 3333333333 2446666653 34445555555544
No 245
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.39 E-value=0.099 Score=44.48 Aligned_cols=49 Identities=24% Similarity=0.400 Sum_probs=32.3
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
+++.|++|+|||. +++.++....+ ++.+++|++ +.+...++...+..++
T Consensus 2 ~li~G~~G~GKT~-l~~~~~~~~~~-------~g~~v~~~s-~e~~~~~~~~~~~~~g 50 (187)
T cd01124 2 TLLSGGPGTGKTT-FALQFLYAGLA-------RGEPGLYVT-LEESPEELIENAESLG 50 (187)
T ss_pred EEEEcCCCCCHHH-HHHHHHHHHHH-------CCCcEEEEE-CCCCHHHHHHHHHHcC
Confidence 5788999999994 33333333333 466778775 4466777777776663
No 246
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.38 E-value=0.4 Score=43.36 Aligned_cols=32 Identities=22% Similarity=0.203 Sum_probs=21.4
Q ss_pred CCCHHHHHhhhhhc----CCC-cEEEEcCCCChhHHH
Q psy17644 189 SPTPIQAQAVPAAL----SGR-DIIGVAKTGSGKTGA 220 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~----~g~-d~i~~a~TGsGKT~a 220 (330)
.+++.+.+++..+. .+. -++++|++|+|||..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl 59 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTL 59 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 35566666665543 333 577889999999943
No 247
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.36 E-value=0.011 Score=50.59 Aligned_cols=102 Identities=20% Similarity=0.162 Sum_probs=40.2
Q ss_pred EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH
Q psy17644 208 IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL 287 (330)
Q Consensus 208 i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l 287 (330)
++.|.-|-||+.+.-+.+.. ++. ....+++|.+|+.+-+..+++.+.+-.+..+.+......+. ......
T Consensus 1 VltA~RGRGKSa~lGl~~a~-l~~------~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~---~~~~~~ 70 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAA-LIQ------KGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIG---QIIKLR 70 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCC-SSS-----------EEEE-SS--S-HHHHHCC---------------------------
T ss_pred CccCCCCCCHHHHHHHHHHH-HHH------hcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccc---cccccc
Confidence 46789999999654443221 111 12357999999999999888877665544443330000000 000111
Q ss_pred hCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 288 ELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 288 ~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
..+..|-+..|..+...- ...++||||||=.+
T Consensus 71 ~~~~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaI 102 (177)
T PF05127_consen 71 FNKQRIEFVAPDELLAEK-------PQADLLIVDEAAAI 102 (177)
T ss_dssp --CCC--B--HHHHCCT-----------SCEEECTGGGS
T ss_pred cccceEEEECCHHHHhCc-------CCCCEEEEechhcC
Confidence 123567777776665322 24589999999543
No 248
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=94.35 E-value=0.14 Score=51.30 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=55.5
Q ss_pred CCCCHH-HHHHHHHCCCCCCC----HHHHHhhhhhcC--CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 172 FGFDEV-LMKALRKCEYTSPT----PIQAQAVPAALS--GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 172 ~~l~~~-l~~~l~~~~~~~pt----~iQ~~~i~~~~~--g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
.++... |+.+|.+.--.++. .||++-=.+|.+ ++-++++|..|||||.+.+ |=+.+++..-.... .+..+|
T Consensus 187 ~~~~dEvL~~~Lek~ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiAL-HRvAyLlY~~R~~l-~~k~vl 264 (747)
T COG3973 187 TGGRDEVLQRVLEKNSSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIAL-HRVAYLLYGYRGPL-QAKPVL 264 (747)
T ss_pred CchHHHHHHHHHHhccchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHH-HHHHHHHhcccccc-ccCceE
Confidence 344444 44555554333332 244444444443 4557788999999996544 44444443322222 233399
Q ss_pred EEcccHHHHHHHHHHHHHhcc
Q psy17644 245 ILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~ 265 (330)
||.|.|-++.-+.+.+=.++.
T Consensus 265 vl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 265 VLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred EEcCcHHHHHHHHHhchhhcc
Confidence 999999999998888888765
No 249
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=94.33 E-value=0.86 Score=48.95 Aligned_cols=80 Identities=9% Similarity=0.182 Sum_probs=60.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.+++|++|+++-+..+++.++++.. +.++..++|+......... +.. ..+|+|||- ++. ..+++.+
T Consensus 659 ~g~qv~if~n~i~~~e~l~~~L~~~~p--~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~-----iie-~GIDIp~ 730 (926)
T TIGR00580 659 RGGQVFYVHNRIESIEKLATQLRELVP--EARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT-----IIE-TGIDIPN 730 (926)
T ss_pred cCCeEEEEECCcHHHHHHHHHHHHhCC--CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-ccccccc
Confidence 467899999999999999999888643 5688889998876554333 233 489999994 343 3567889
Q ss_pred ccEEEeeccccc
Q psy17644 315 VTFLVLDEADRM 326 (330)
Q Consensus 315 i~~lVvDEad~l 326 (330)
+.+||+..+++.
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999988763
No 250
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=94.30 E-value=0.037 Score=55.99 Aligned_cols=122 Identities=19% Similarity=0.197 Sum_probs=73.8
Q ss_pred CCCHHHHHhhhhhcC--CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH-HHHhcc
Q psy17644 189 SPTPIQAQAVPAALS--GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE-AKRFGK 265 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~--g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~-~~~l~~ 265 (330)
..+|+|...+..+.. -+.++++.++-+|||. .++-++-+.+.+ ....+|++.||..+|...... +..+.+
T Consensus 16 ~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~-~~~n~~g~~i~~------~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 16 DRTPYLREIMDALSDPSVREVVVMKSAQVGKTE-LLLNWIGYSIDQ------DPGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CCChhHHHHHHhcCCcCccEEEEEEcchhhHhH-HHHhhceEEEEe------CCCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 567999998888774 3688889999999997 334444444443 235579999999999998854 665544
Q ss_pred CCCceEEEEEC----CCchHHHHHHHhCCCeEEEE---ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 266 GYNLSVVCCYG----GGSKWDQSKALELGAEIVVG---TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 266 ~~~~~~~~~~g----g~~~~~~~~~l~~~~dIiV~---TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
....-...+.. ........+.+. +..|.++ ||..|. -..+++|++||.|.+-
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~~l~---------s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPSNLR---------SRPARYLLLDEVDRYP 147 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCcccc---------cCCcCEEEEechhhcc
Confidence 33221111111 011111122233 3344443 232222 4578999999999874
No 251
>PRK08506 replicative DNA helicase; Provisional
Probab=94.26 E-value=0.26 Score=48.94 Aligned_cols=113 Identities=13% Similarity=0.094 Sum_probs=57.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEE-ECCCchH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCC-YGGGSKW 281 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~-~gg~~~~ 281 (330)
.|.=+++.|+||.||| +|++-+..++.. .+..|+|++. -.-..|+...+..... ++....+ .|..+..
T Consensus 191 ~G~LivIaarpg~GKT-~fal~ia~~~~~-------~g~~V~~fSl-EMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~ 259 (472)
T PRK08506 191 KGDLIIIAARPSMGKT-TLCLNMALKALN-------QDKGVAFFSL-EMPAEQLMLRMLSAKT--SIPLQNLRTGDLDDD 259 (472)
T ss_pred CCceEEEEcCCCCChH-HHHHHHHHHHHh-------cCCcEEEEeC-cCCHHHHHHHHHHHhc--CCCHHHHhcCCCCHH
Confidence 3444566699999999 566666666543 2455666643 3445555555433211 2211111 2222222
Q ss_pred HH------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 282 DQ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 282 ~~------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.+ ...+.. ..+.|. |+..+...+++-......+.+||||=.+.|-
T Consensus 260 e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 260 EWERLSDACDELSK-KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHHc-CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 21 122333 345553 4555555444321112358999999988764
No 252
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=94.20 E-value=0.27 Score=48.02 Aligned_cols=115 Identities=16% Similarity=0.143 Sum_probs=55.4
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCC-ch
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGG-SK 280 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~-~~ 280 (330)
..|.=+++.|++|+||| +|++.+..++... .+..|+|++ .-.-..|+...+.... .++....+..|. ..
T Consensus 192 ~~g~liviag~pg~GKT-~~al~ia~~~a~~------~g~~v~~fS-lEm~~~~l~~Rl~~~~--~~v~~~~~~~~~l~~ 261 (421)
T TIGR03600 192 VKGDLIVIGARPSMGKT-TLALNIAENVALR------EGKPVLFFS-LEMSAEQLGERLLASK--SGINTGNIRTGRFND 261 (421)
T ss_pred CCCceEEEEeCCCCCHH-HHHHHHHHHHHHh------CCCcEEEEE-CCCCHHHHHHHHHHHH--cCCCHHHHhcCCCCH
Confidence 34555666799999999 5555555444321 245567765 2233444444432221 122211111222 21
Q ss_pred HHH------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 281 WDQ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 281 ~~~------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
... ...+.. ..+.|. |+..+...+++-......+++||||-.+.|-
T Consensus 262 ~~~~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDyLql~~ 318 (421)
T TIGR03600 262 SDFNRLLNAVDRLSE-KDLYIDDTGGLTVAQIRSIARRIKRKKGGLDLIVVDYIQLMA 318 (421)
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEecccccC
Confidence 111 122222 345553 3444444333211112258899999988774
No 253
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=94.09 E-value=0.16 Score=46.09 Aligned_cols=17 Identities=29% Similarity=0.302 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
..++++.||+|+|||..
T Consensus 42 ~~~vll~GppGtGKTtl 58 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTV 58 (261)
T ss_pred cceEEEEcCCCCCHHHH
Confidence 45789999999999944
No 254
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.07 E-value=0.16 Score=48.80 Aligned_cols=17 Identities=24% Similarity=0.366 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
+.++++.|++|+|||.+
T Consensus 55 ~~~~lI~G~~GtGKT~l 71 (394)
T PRK00411 55 PLNVLIYGPPGTGKTTT 71 (394)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 36799999999999943
No 255
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=94.04 E-value=0.069 Score=52.76 Aligned_cols=50 Identities=28% Similarity=0.426 Sum_probs=39.2
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.+++++|+||||||..|++|.|.. . ..-+||.=|-.+|+..+...+++.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~---~-------~~s~iV~D~KgEl~~~t~~~r~~~G 94 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN---Y-------PGSMIVTDPKGELYEKTAGYRKKRG 94 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh---c-------cCCEEEEECCCcHHHHHHHHHHHCC
Confidence 579999999999999999998743 1 2267888888999887777666653
No 256
>PRK05748 replicative DNA helicase; Provisional
Probab=93.99 E-value=0.32 Score=47.89 Aligned_cols=112 Identities=17% Similarity=0.128 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH-HhccCCCceEEEEECCC-ch
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK-RFGKGYNLSVVCCYGGG-SK 280 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~-~l~~~~~~~~~~~~gg~-~~ 280 (330)
.|.=+++.|+||+||| +|.+.++.++... .+..|+|++ .-.-..|+...+. .++ ++....+..|. ..
T Consensus 202 ~G~livIaarpg~GKT-~~al~ia~~~a~~------~g~~v~~fS-lEms~~~l~~R~l~~~~---~v~~~~i~~~~l~~ 270 (448)
T PRK05748 202 PNDLIIVAARPSVGKT-AFALNIAQNVATK------TDKNVAIFS-LEMGAESLVMRMLCAEG---NIDAQRLRTGQLTD 270 (448)
T ss_pred CCceEEEEeCCCCCch-HHHHHHHHHHHHh------CCCeEEEEe-CCCCHHHHHHHHHHHhc---CCCHHHhhcCCCCH
Confidence 4455666799999999 5666666665432 244566654 3344455555543 222 11111111222 22
Q ss_pred HHH------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 281 WDQ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 281 ~~~------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
..+ ...+.. ..+.|. |+..+...+++-......+++||||=.+.|
T Consensus 271 ~e~~~~~~a~~~l~~-~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li 326 (448)
T PRK05748 271 DDWPKLTIAMGSLSD-APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLI 326 (448)
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhc
Confidence 221 122333 345553 445555444321111126889999998877
No 257
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=93.97 E-value=0.18 Score=48.32 Aligned_cols=26 Identities=23% Similarity=0.217 Sum_probs=18.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
.-++++++|||||| +++-.++.++..
T Consensus 150 GlilI~G~TGSGKT-T~l~al~~~i~~ 175 (372)
T TIGR02525 150 GLGLICGETGSGKS-TLAASIYQHCGE 175 (372)
T ss_pred CEEEEECCCCCCHH-HHHHHHHHHHHh
Confidence 45788999999999 344556666653
No 258
>PRK08181 transposase; Validated
Probab=93.96 E-value=0.16 Score=46.62 Aligned_cols=48 Identities=19% Similarity=0.307 Sum_probs=29.7
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
+-.+++++++|++|+|||.... .+.+++.. .|-+|++ ++..+|+.++.
T Consensus 103 ~~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~-------~g~~v~f-~~~~~L~~~l~ 150 (269)
T PRK08181 103 LAKGANLLLFGPPGGGKSHLAA-AIGLALIE-------NGWRVLF-TRTTDLVQKLQ 150 (269)
T ss_pred HhcCceEEEEecCCCcHHHHHH-HHHHHHHH-------cCCceee-eeHHHHHHHHH
Confidence 3478899999999999993322 12233333 2445544 45667777653
No 259
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.93 E-value=0.053 Score=52.24 Aligned_cols=48 Identities=23% Similarity=0.252 Sum_probs=36.9
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
+++++|+||||||.++++|.+.. ....+||+=|--++...+....++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~----------~~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT----------WPGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc----------CCCCEEEEccchhHHHHHHHHHHHc
Confidence 47899999999999999987653 1346788888888887776666554
No 260
>PRK07004 replicative DNA helicase; Provisional
Probab=93.90 E-value=0.19 Score=49.65 Aligned_cols=114 Identities=16% Similarity=0.106 Sum_probs=54.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEE-ECCCchH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCC-YGGGSKW 281 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~-~gg~~~~ 281 (330)
.|.=+++.|++|+||| +|++-+..++... .+..|+|++. -.-..|+...+-.... ++....+ .|..+..
T Consensus 212 ~g~liviaarpg~GKT-~~al~ia~~~a~~------~~~~v~~fSl-EM~~~ql~~R~la~~~--~v~~~~i~~g~l~~~ 281 (460)
T PRK07004 212 GGELIIVAGRPSMGKT-AFSMNIGEYVAVE------YGLPVAVFSM-EMPGTQLAMRMLGSVG--RLDQHRMRTGRLTDE 281 (460)
T ss_pred CCceEEEEeCCCCCcc-HHHHHHHHHHHHH------cCCeEEEEeC-CCCHHHHHHHHHHhhc--CCCHHHHhcCCCCHH
Confidence 3455666799999999 4555555554321 2445666542 2333444444321111 1111111 2222322
Q ss_pred HH------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 282 DQ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 282 ~~------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
++ ...+.. ..+.|. |+..+....++-......+.+||||-.+.|-
T Consensus 282 e~~~~~~a~~~l~~-~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 282 DWPKLTHAVQKMSE-AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 22 122333 456663 4445544333211112357899999988774
No 261
>PRK08006 replicative DNA helicase; Provisional
Probab=93.88 E-value=0.66 Score=46.05 Aligned_cols=114 Identities=16% Similarity=0.073 Sum_probs=55.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEE-ECCCchHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCC-YGGGSKWD 282 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~-~gg~~~~~ 282 (330)
|.=+++.|.+|.||| +|.+-+..++... .+..|+|++.- --..|+...+..... ++....+ .|..+..+
T Consensus 224 G~LiiIaarPgmGKT-afalnia~~~a~~------~g~~V~~fSlE-M~~~ql~~Rlla~~~--~v~~~~i~~~~l~~~e 293 (471)
T PRK08006 224 SDLIIVAARPSMGKT-TFAMNLCENAAML------QDKPVLIFSLE-MPGEQIMMRMLASLS--RVDQTRIRTGQLDDED 293 (471)
T ss_pred CcEEEEEeCCCCCHH-HHHHHHHHHHHHh------cCCeEEEEecc-CCHHHHHHHHHHHhc--CCCHHHhhcCCCCHHH
Confidence 344555699999999 5666555554421 24456666432 334444444332211 1221111 23333332
Q ss_pred HH------HHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 283 QS------KALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 283 ~~------~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+. ..+.....+.|- |+..+...+++-......+.+||||=.+.|-
T Consensus 294 ~~~~~~a~~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 294 WARISGTMGILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 21 122123445553 4555544443211112358999999988763
No 262
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=93.85 E-value=0.23 Score=42.49 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=37.7
Q ss_pred hhhhhc-CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC---CCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 197 AVPAAL-SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE---PGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 197 ~i~~~~-~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~---~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
+++-++ .|.=+++.|++|+||| .+++.++.++....+.- ...+.+||++..-.. ..++...+..+..
T Consensus 24 li~g~~~~g~l~~i~g~~g~GKT-~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~~~ 94 (193)
T PF13481_consen 24 LIDGLLPRGELTLIAGPPGSGKT-TLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRALLQ 94 (193)
T ss_dssp EETTEE-TTSEEEEEECSTSSHH-HHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHHHT
T ss_pred eECCcccCCeEEEEEeCCCCCHH-HHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHHhc
Confidence 344444 5666888899999999 45566666666432221 113567777765433 5677777776654
No 263
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.82 E-value=0.34 Score=46.41 Aligned_cols=24 Identities=38% Similarity=0.465 Sum_probs=17.0
Q ss_pred hhhhhcCC--CcEEEEcCCCChhHHH
Q psy17644 197 AVPAALSG--RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g--~d~i~~a~TGsGKT~a 220 (330)
..|++.++ .++++-|+||+|||++
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~ 58 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTAT 58 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHH
Confidence 44555443 3688889999999954
No 264
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.81 E-value=0.15 Score=45.71 Aligned_cols=53 Identities=21% Similarity=0.256 Sum_probs=36.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.-+++.|++|+|||.. ++.++...++ ++-++++++ +.+-..++.+.+..++
T Consensus 20 ~gs~~lI~G~pGsGKT~l-a~~~l~~~~~-------~ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIF-SQQFLWNGLQ-------MGEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CCeEEEEEcCCCCCHHHH-HHHHHHHHHH-------cCCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 467888999999999943 3333333223 366778877 5567778888777664
No 265
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=93.74 E-value=0.17 Score=47.80 Aligned_cols=29 Identities=38% Similarity=0.453 Sum_probs=21.0
Q ss_pred hhcCCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
++..+++++++|+|||||| +++-.++.++
T Consensus 156 ~v~~~~nili~G~tgSGKT-Tll~aL~~~i 184 (332)
T PRK13900 156 AVISKKNIIISGGTSTGKT-TFTNAALREI 184 (332)
T ss_pred HHHcCCcEEEECCCCCCHH-HHHHHHHhhC
Confidence 3447889999999999999 3444444444
No 266
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=93.67 E-value=0.13 Score=46.82 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=34.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAK 261 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~ 261 (330)
++.++++.|++|+|||. ++.++.+-+.+ .|.. ++++++.+|+.++...+.
T Consensus 104 ~~~nl~l~G~~G~GKTh--La~Ai~~~l~~------~g~s-v~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 104 RGENLVLLGPPGVGKTH--LAIAIGNELLK------AGIS-VLFITAPDLLSKLKAAFD 153 (254)
T ss_pred cCCcEEEECCCCCcHHH--HHHHHHHHHHH------cCCe-EEEEEHHHHHHHHHHHHh
Confidence 78899999999999994 33344333332 2444 555688899888877554
No 267
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=93.66 E-value=0.088 Score=49.99 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=20.4
Q ss_pred hhhcCCCcEEEEcCCCChhHHHHHHHHHHH
Q psy17644 199 PAALSGRDIIGVAKTGSGKTGAFIWPMLVH 228 (330)
Q Consensus 199 ~~~~~g~d~i~~a~TGsGKT~a~llp~l~~ 228 (330)
-++..+++++++|+|||||| +++-.++.+
T Consensus 157 ~~v~~~~nilI~G~tGSGKT-Tll~aLl~~ 185 (344)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKT-TMSKTLISA 185 (344)
T ss_pred HHHHcCCeEEEECCCCccHH-HHHHHHHcc
Confidence 34457889999999999999 333333433
No 268
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.66 E-value=0.38 Score=46.81 Aligned_cols=19 Identities=37% Similarity=0.436 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCChhHHHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~l 222 (330)
++-+++++++|+|||....
T Consensus 223 ~~vi~lvGptGvGKTTtaa 241 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIA 241 (432)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3446778999999995433
No 269
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=93.64 E-value=0.28 Score=48.84 Aligned_cols=74 Identities=24% Similarity=0.205 Sum_probs=54.0
Q ss_pred CCCCHHHHHhhhhhcC----------CCcEEEEcCCCChhHH-HHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAALS----------GRDIIGVAKTGSGKTG-AFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQI 256 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~----------g~d~i~~a~TGsGKT~-a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi 256 (330)
...-|+|+-++-.++. -+..++..+-+-|||. +..+.+...++.. ..+-...|++|+.+-+.+.
T Consensus 60 ~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-----~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 60 ESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-----RSGAGIYILAPSVEQAANS 134 (546)
T ss_pred cccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-----hcCCcEEEEeccHHHHHHh
Confidence 3467999999988871 1357777888999983 3334444444443 2578899999999999999
Q ss_pred HHHHHHhccC
Q psy17644 257 YNEAKRFGKG 266 (330)
Q Consensus 257 ~~~~~~l~~~ 266 (330)
+..++.....
T Consensus 135 F~~ar~mv~~ 144 (546)
T COG4626 135 FNPARDMVKR 144 (546)
T ss_pred hHHHHHHHHh
Confidence 9998877654
No 270
>PRK13764 ATPase; Provisional
Probab=93.62 E-value=0.17 Score=51.51 Aligned_cols=27 Identities=19% Similarity=0.289 Sum_probs=19.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
.+++++++++||||||. ++-.++.++.
T Consensus 256 ~~~~ILIsG~TGSGKTT-ll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKST-FAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 46789999999999993 4444555553
No 271
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=93.62 E-value=0.63 Score=40.49 Aligned_cols=39 Identities=21% Similarity=0.177 Sum_probs=25.6
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
.|+=+.+.+++|+|||.. ++.++.+... ++.+++++.-.
T Consensus 11 ~g~i~~i~G~~GsGKT~l-~~~~~~~~~~-------~g~~v~yi~~e 49 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNI-CMILAVNAAR-------QGKKVVYIDTE 49 (209)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEECC
Confidence 456678889999999943 3444444433 35677777664
No 272
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.53 E-value=0.37 Score=47.23 Aligned_cols=88 Identities=20% Similarity=0.188 Sum_probs=42.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc-c-HHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP-T-RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P-t-r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
..-+++++++|+|||.+..--+ .++.. .+.++++++. + |..+ +..++.++...++.+..........
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA-~~L~~-------~g~kV~lV~~D~~R~aa---~eQL~~la~~~gvp~~~~~~~~d~~ 163 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA-RYFKK-------KGLKVGLVAADTYRPAA---YDQLKQLAEKIGVPFYGDPDNKDAV 163 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH-HHHHH-------cCCeEEEecCCCCCHHH---HHHHHHHHHHcCCcEEecCCccCHH
Confidence 3457788999999995433222 23322 2345554443 3 3332 3334444444455543322222221
Q ss_pred H----HHHHHhCCCeEEEEChHHHH
Q psy17644 282 D----QSKALELGAEIVVGTPGRII 302 (330)
Q Consensus 282 ~----~~~~l~~~~dIiV~TP~~L~ 302 (330)
. ........--|||=||+++.
T Consensus 164 ~i~~~al~~~~~~DvVIIDTAGr~~ 188 (437)
T PRK00771 164 EIAKEGLEKFKKADVIIVDTAGRHA 188 (437)
T ss_pred HHHHHHHHHhhcCCEEEEECCCccc
Confidence 1 11222222235667888765
No 273
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=93.53 E-value=0.17 Score=43.39 Aligned_cols=49 Identities=18% Similarity=0.275 Sum_probs=28.7
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
+-+++++++.|++|+|||.... .+.+.+.. .+..|++ +++.+|+..+..
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~-------~g~~v~f-~~~~~L~~~l~~ 92 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAV-AIANEAIR-------KGYSVLF-ITASDLLDELKQ 92 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHH-HHHHHHHH-------TT--EEE-EEHHHHHHHHHC
T ss_pred cccCeEEEEEhhHhHHHHHHHH-HHHHHhcc-------CCcceeE-eecCceeccccc
Confidence 3478899999999999995433 23344444 2455555 466677766543
No 274
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=93.53 E-value=0.25 Score=45.86 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=18.9
Q ss_pred CCc-EEEEcCCCChhHHHHHHHHHHHHHhc
Q psy17644 204 GRD-IIGVAKTGSGKTGAFIWPMLVHIMDQ 232 (330)
Q Consensus 204 g~d-~i~~a~TGsGKT~a~llp~l~~i~~~ 232 (330)
... +++.||.|+|||.+. +.+...++..
T Consensus 23 ~~halL~~Gp~G~Gktt~a-~~lA~~l~~~ 51 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAA-LALAKELLCE 51 (325)
T ss_pred CCceeeeeCCCCCCHHHHH-HHHHHHHhCC
Confidence 445 899999999999543 3344555544
No 275
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=93.51 E-value=0.62 Score=47.43 Aligned_cols=74 Identities=15% Similarity=0.267 Sum_probs=54.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|.++++.+.+. ++.+..++|+....+.... +++ ..+||||| +++. ..+++..
T Consensus 256 ~~~k~LVF~nt~~~ae~l~~~L~~~----g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaT-----dv~a-rGIDip~ 325 (572)
T PRK04537 256 EGARTMVFVNTKAFVERVARTLERH----GYRVGVLSGDVPQKKRESLLNRFQKGQLEILVAT-----DVAA-RGLHIDG 325 (572)
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHc----CCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe-----hhhh-cCCCccC
Confidence 4678999999999999999988765 5788888988776554333 333 47999999 3343 3556778
Q ss_pred ccEEEeec
Q psy17644 315 VTFLVLDE 322 (330)
Q Consensus 315 i~~lVvDE 322 (330)
|.+||.-.
T Consensus 326 V~~VInyd 333 (572)
T PRK04537 326 VKYVYNYD 333 (572)
T ss_pred CCEEEEcC
Confidence 88877543
No 276
>PRK06904 replicative DNA helicase; Validated
Probab=93.47 E-value=0.71 Score=45.82 Aligned_cols=114 Identities=14% Similarity=0.066 Sum_probs=56.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEE-EC-CCchH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCC-YG-GGSKW 281 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~-~g-g~~~~ 281 (330)
|.=+++.|.+|.|||. |.+-+..++... .+..|+|++. ---..|+...+...... +....+ .| ..+..
T Consensus 221 G~LiiIaarPg~GKTa-falnia~~~a~~------~g~~Vl~fSl-EMs~~ql~~Rlla~~s~--v~~~~i~~g~~l~~~ 290 (472)
T PRK06904 221 SDLIIVAARPSMGKTT-FAMNLCENAAMA------SEKPVLVFSL-EMPAEQIMMRMLASLSR--VDQTKIRTGQNLDQQ 290 (472)
T ss_pred CcEEEEEeCCCCChHH-HHHHHHHHHHHh------cCCeEEEEec-cCCHHHHHHHHHHhhCC--CCHHHhccCCCCCHH
Confidence 3344555999999994 555555555432 2445666643 24455555554332221 221111 22 12222
Q ss_pred HH------HHHHhCCCeEEE-----EChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 282 DQ------SKALELGAEIVV-----GTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 282 ~~------~~~l~~~~dIiV-----~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.+ ...+.....+.| .|+..+...+++-......+.+||||-.+.|-
T Consensus 291 e~~~~~~a~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 291 DWAKISSTVGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 22 122333344655 35555554443211112358899999888764
No 277
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=93.44 E-value=0.29 Score=46.51 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=17.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
..+++.|++|+|||.+ +-.++.++
T Consensus 41 ~~i~I~G~~GtGKT~l-~~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAV-TKYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHH
Confidence 5799999999999943 33344444
No 278
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.44 E-value=0.62 Score=44.75 Aligned_cols=53 Identities=25% Similarity=0.334 Sum_probs=33.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.=+++.+++|+|||. +++-++..+.. .+.+++|+.-. +...|+...+.+++
T Consensus 81 ~GslvLI~G~pG~GKSt-Lllq~a~~~a~-------~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 81 PGSVILIGGDPGIGKST-LLLQVAARLAK-------RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred CCeEEEEEeCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 45667778999999994 33434444333 24578887654 44567766666653
No 279
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.43 E-value=0.24 Score=47.33 Aligned_cols=27 Identities=19% Similarity=0.287 Sum_probs=18.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
.+.-++++++||||||. .+-.++.++.
T Consensus 133 ~~glilI~GpTGSGKTT-tL~aLl~~i~ 159 (358)
T TIGR02524 133 QEGIVFITGATGSGKST-LLAAIIRELA 159 (358)
T ss_pred cCCEEEEECCCCCCHHH-HHHHHHHHHh
Confidence 45678889999999993 2333444443
No 280
>PRK14974 cell division protein FtsY; Provisional
Probab=93.43 E-value=0.53 Score=44.58 Aligned_cols=85 Identities=25% Similarity=0.297 Sum_probs=41.5
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc--HH-HHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT--RE-LSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt--r~-La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
+=+++++++|+|||.+..- +.+.+.. .+.+++++... |. ...|+...... .++.+.....|....
T Consensus 141 ~vi~~~G~~GvGKTTtiak--LA~~l~~------~g~~V~li~~Dt~R~~a~eqL~~~a~~----lgv~v~~~~~g~dp~ 208 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAK--LAYYLKK------NGFSVVIAAGDTFRAGAIEQLEEHAER----LGVKVIKHKYGADPA 208 (336)
T ss_pred eEEEEEcCCCCCHHHHHHH--HHHHHHH------cCCeEEEecCCcCcHHHHHHHHHHHHH----cCCceecccCCCCHH
Confidence 4466779999999943322 2223332 24566555532 33 33454444443 355544333333221
Q ss_pred H----HH-HHHhCCCe-EEEEChHHH
Q psy17644 282 D----QS-KALELGAE-IVVGTPGRI 301 (330)
Q Consensus 282 ~----~~-~~l~~~~d-IiV~TP~~L 301 (330)
. .. .....+.+ |||=|++++
T Consensus 209 ~v~~~ai~~~~~~~~DvVLIDTaGr~ 234 (336)
T PRK14974 209 AVAYDAIEHAKARGIDVVLIDTAGRM 234 (336)
T ss_pred HHHHHHHHHHHhCCCCEEEEECCCcc
Confidence 1 11 11223455 566788877
No 281
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.42 E-value=0.25 Score=43.45 Aligned_cols=18 Identities=28% Similarity=0.307 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++.+++.|++|+|||..
T Consensus 37 ~~~~lll~G~~G~GKT~l 54 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHL 54 (226)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 457899999999999943
No 282
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=93.37 E-value=0.25 Score=43.68 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=14.1
Q ss_pred CCCcEEEEcCCCChhH
Q psy17644 203 SGRDIIGVAKTGSGKT 218 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT 218 (330)
.++.++++|++|+|||
T Consensus 41 ~~~~~~l~G~~G~GKT 56 (227)
T PRK08903 41 ADRFFYLWGEAGSGRS 56 (227)
T ss_pred CCCeEEEECCCCCCHH
Confidence 4567999999999999
No 283
>PRK10689 transcription-repair coupling factor; Provisional
Probab=93.35 E-value=0.4 Score=52.59 Aligned_cols=79 Identities=11% Similarity=0.148 Sum_probs=60.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---Hh-CCCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LE-LGAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+.+++|++|+++.+..+++.+.++.. +.++.+++|+.+....... ++ ...+|+||| +++. ..+++.++
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~p--~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaT-----dIie-rGIDIP~v 880 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCT-----TIIE-TGIDIPTA 880 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEC-----chhh-cccccccC
Confidence 56899999999999999998888754 4577888998876654333 22 358999999 3443 35678899
Q ss_pred cEEEeeccccc
Q psy17644 316 TFLVLDEADRM 326 (330)
Q Consensus 316 ~~lVvDEad~l 326 (330)
.+||+..||+.
T Consensus 881 ~~VIi~~ad~f 891 (1147)
T PRK10689 881 NTIIIERADHF 891 (1147)
T ss_pred CEEEEecCCCC
Confidence 99999988863
No 284
>PRK06921 hypothetical protein; Provisional
Probab=93.35 E-value=0.47 Score=43.38 Aligned_cols=48 Identities=21% Similarity=0.171 Sum_probs=28.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
.+..+++.|++|+|||... ..+.+.+..+ .+..|+++. ..++..++..
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~------~g~~v~y~~-~~~l~~~l~~ 163 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK------KGVPVLYFP-FVEGFGDLKD 163 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh------cCceEEEEE-HHHHHHHHHH
Confidence 4678999999999999322 2233333331 155666654 4566555543
No 285
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=93.34 E-value=0.4 Score=46.97 Aligned_cols=113 Identities=17% Similarity=0.086 Sum_probs=56.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECC-CchH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGG-GSKW 281 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg-~~~~ 281 (330)
.|.=+++.|++|+||| +|++-++.++... .+..|++++. -.-..|+...+...... +....+..| ....
T Consensus 194 ~G~l~vi~g~pg~GKT-~~~l~~a~~~a~~------~g~~vl~~Sl-Em~~~~i~~R~~~~~~~--v~~~~~~~g~l~~~ 263 (434)
T TIGR00665 194 PSDLIILAARPSMGKT-AFALNIAENAAIK------EGKPVAFFSL-EMSAEQLAMRMLSSESR--VDSQKLRTGKLSDE 263 (434)
T ss_pred CCeEEEEEeCCCCChH-HHHHHHHHHHHHh------CCCeEEEEeC-cCCHHHHHHHHHHHhcC--CCHHHhccCCCCHH
Confidence 4455667799999999 5666666555431 2455666653 33445555544433222 221111222 2222
Q ss_pred HH------HHHHhCCCeEEE-E----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 282 DQ------SKALELGAEIVV-G----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 282 ~~------~~~l~~~~dIiV-~----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+. ...+.. ..+.| . |+..+...+++-... ..+++||||=.+.|-
T Consensus 264 ~~~~~~~a~~~l~~-~~l~i~d~~~~~~~~i~~~i~~~~~~-~~~~~vvID~l~~i~ 318 (434)
T TIGR00665 264 DWEKLTSAAGKLSE-APLYIDDTPGLTITELRAKARRLKRE-HGLGLIVIDYLQLMS 318 (434)
T ss_pred HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHh-cCCCEEEEcchHhcC
Confidence 11 122333 34544 2 445555444322111 247899999887763
No 286
>PRK06835 DNA replication protein DnaC; Validated
Probab=93.34 E-value=0.26 Score=46.53 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=29.0
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHH-HHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPML-VHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l-~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
.++++++.|+||+|||. ++.++ +.++. .+..|+++ +...|..++..
T Consensus 182 ~~~~Lll~G~~GtGKTh--La~aIa~~l~~-------~g~~V~y~-t~~~l~~~l~~ 228 (329)
T PRK06835 182 NNENLLFYGNTGTGKTF--LSNCIAKELLD-------RGKSVIYR-TADELIEILRE 228 (329)
T ss_pred cCCcEEEECCCCCcHHH--HHHHHHHHHHH-------CCCeEEEE-EHHHHHHHHHH
Confidence 45889999999999994 33333 33433 24556554 55666665533
No 287
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.28 E-value=0.15 Score=45.04 Aligned_cols=53 Identities=25% Similarity=0.389 Sum_probs=33.1
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCC-CCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGD-GPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~-~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.-+++.+++|+|||. |++.++..-+. + +-++++++ +.+-..++.+.++.++
T Consensus 18 ~gs~~li~G~~GsGKT~-l~~q~l~~~~~-------~~ge~vlyvs-~ee~~~~l~~~~~s~g 71 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTT-LALQFLYNGLK-------NFGEKVLYVS-FEEPPEELIENMKSFG 71 (226)
T ss_dssp TTSEEEEEESTTSSHHH-HHHHHHHHHHH-------HHT--EEEEE-SSS-HHHHHHHHHTTT
T ss_pred CCcEEEEEeCCCCCcHH-HHHHHHHHhhh-------hcCCcEEEEE-ecCCHHHHHHHHHHcC
Confidence 56788999999999994 33333332222 2 45677776 4556677777777764
No 288
>KOG0989|consensus
Probab=93.28 E-value=0.08 Score=48.88 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=15.0
Q ss_pred CcEEEEcCCCChhHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIW 223 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~ll 223 (330)
-+.++.||.|+|||.+.++
T Consensus 58 p~~LFyGPpGTGKTStala 76 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALA 76 (346)
T ss_pred ceEEeeCCCCCcHhHHHHH
Confidence 4678899999999965543
No 289
>PRK08116 hypothetical protein; Validated
Probab=93.28 E-value=1.3 Score=40.49 Aligned_cols=45 Identities=16% Similarity=0.179 Sum_probs=27.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
..+++.|++|+|||.... ++.+++..+ +..++ .++..+++..+..
T Consensus 115 ~gl~l~G~~GtGKThLa~-aia~~l~~~-------~~~v~-~~~~~~ll~~i~~ 159 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAA-CIANELIEK-------GVPVI-FVNFPQLLNRIKS 159 (268)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHHHHc-------CCeEE-EEEHHHHHHHHHH
Confidence 459999999999994332 345555542 33444 4456666666643
No 290
>PRK05595 replicative DNA helicase; Provisional
Probab=93.18 E-value=0.5 Score=46.49 Aligned_cols=113 Identities=15% Similarity=0.104 Sum_probs=53.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ 283 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~ 283 (330)
|.=+++.|+||+||| +|++.+..++... .+.+|+|+.. ..-..|+...+............ ..|......+
T Consensus 201 g~liviaarpg~GKT-~~al~ia~~~a~~------~g~~vl~fSl-Ems~~~l~~R~~a~~~~v~~~~~-~~~~l~~~e~ 271 (444)
T PRK05595 201 GDMILIAARPSMGKT-TFALNIAEYAALR------EGKSVAIFSL-EMSKEQLAYKLLCSEANVDMLRL-RTGNLEDKDW 271 (444)
T ss_pred CcEEEEEecCCCChH-HHHHHHHHHHHHH------cCCcEEEEec-CCCHHHHHHHHHHHhcCCCHHHH-hcCCCCHHHH
Confidence 334455699999999 5666665554321 3566777654 23344444443332211111111 1122222221
Q ss_pred H------HHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 284 S------KALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 284 ~------~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
. ..+.. ..+.|- |+..+...+++... -..+++||||-.+.|-
T Consensus 272 ~~~~~~~~~l~~-~~l~i~d~~~~t~~~i~~~~r~~~~-~~~~~~vvIDylql~~ 324 (444)
T PRK05595 272 ENIARASGPLAA-AKIFIDDTAGVSVMEMRSKCRRLKI-EHGIDMILIDYLQLMS 324 (444)
T ss_pred HHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEeHHHhcc
Confidence 1 11222 344443 33444443332111 1358899999988774
No 291
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.17 E-value=0.42 Score=46.36 Aligned_cols=47 Identities=11% Similarity=0.167 Sum_probs=26.1
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
+..+++.|++|+|||... ..+.+.+... ..+.+++++. ...+..++.
T Consensus 136 ~n~l~l~G~~G~GKThL~-~ai~~~l~~~-----~~~~~v~yi~-~~~~~~~~~ 182 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLL-HAIGNEILEN-----NPNAKVVYVS-SEKFTNDFV 182 (405)
T ss_pred CCeEEEECCCCCcHHHHH-HHHHHHHHHh-----CCCCcEEEEE-HHHHHHHHH
Confidence 346789999999999432 2333444332 1245666664 344444433
No 292
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=93.16 E-value=0.33 Score=45.47 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=13.1
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.||+|+|||..
T Consensus 38 ~lll~Gp~GtGKT~l 52 (337)
T PRK12402 38 HLLVQGPPGSGKTAA 52 (337)
T ss_pred eEEEECCCCCCHHHH
Confidence 689999999999943
No 293
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.12 E-value=1 Score=42.27 Aligned_cols=88 Identities=24% Similarity=0.302 Sum_probs=43.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc-cc-HHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA-PT-RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~-Pt-r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
++-+++++++|+|||.... .|...+.. .+.+|+++. .+ |..+.+.. ..++...++.++....+....
T Consensus 114 ~~vi~lvGpnGsGKTTt~~--kLA~~l~~------~g~~V~Li~~D~~r~~a~eql---~~~a~~~~i~~~~~~~~~dpa 182 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIG--KLAHKYKA------QGKKVLLAAGDTFRAAAIEQL---QVWGERVGVPVIAQKEGADPA 182 (318)
T ss_pred CeEEEEECCCCCcHHHHHH--HHHHHHHh------cCCeEEEEecCccchhhHHHH---HHHHHHcCceEEEeCCCCCHH
Confidence 4557778999999994432 22222222 345666654 33 44332222 222223345544443333321
Q ss_pred HH-----HHHHhCCCe-EEEEChHHHH
Q psy17644 282 DQ-----SKALELGAE-IVVGTPGRII 302 (330)
Q Consensus 282 ~~-----~~~l~~~~d-IiV~TP~~L~ 302 (330)
.. ......++| |||=||+++.
T Consensus 183 ~~v~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 183 SVAFDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCCCCc
Confidence 11 122345566 5667998864
No 294
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=93.07 E-value=0.13 Score=52.35 Aligned_cols=49 Identities=20% Similarity=0.146 Sum_probs=40.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
++++++||||||||..|++|.|... +.-+||+=|--|+...+....+++
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~----------~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW----------EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC----------CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5789999999999999999988652 345788889999988877777665
No 295
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=93.04 E-value=0.45 Score=44.57 Aligned_cols=86 Identities=24% Similarity=0.313 Sum_probs=50.0
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc--cHHHHHHHHHHHHHhccCCCceEEEE-ECCCch---
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP--TRELSQQIYNEAKRFGKGYNLSVVCC-YGGGSK--- 280 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P--tr~La~Qi~~~~~~l~~~~~~~~~~~-~gg~~~--- 280 (330)
+++++-+|+|||.+- .=|.+.+++ +|.+||+.+- .|+-|..+ ++-|++..|+.++.- +|+.+.
T Consensus 142 il~vGVNG~GKTTTI--aKLA~~l~~------~g~~VllaA~DTFRAaAiEQ---L~~w~er~gv~vI~~~~G~DpAaVa 210 (340)
T COG0552 142 ILFVGVNGVGKTTTI--AKLAKYLKQ------QGKSVLLAAGDTFRAAAIEQ---LEVWGERLGVPVISGKEGADPAAVA 210 (340)
T ss_pred EEEEecCCCchHhHH--HHHHHHHHH------CCCeEEEEecchHHHHHHHH---HHHHHHHhCCeEEccCCCCCcHHHH
Confidence 566699999999442 234444443 4677776664 36666543 344444456666652 343332
Q ss_pred -HHHHHHHhCCCeEEEE-ChHHHHH
Q psy17644 281 -WDQSKALELGAEIVVG-TPGRIID 303 (330)
Q Consensus 281 -~~~~~~l~~~~dIiV~-TP~~L~~ 303 (330)
.--.....++.|||++ |.|||+.
T Consensus 211 fDAi~~Akar~~DvvliDTAGRLhn 235 (340)
T COG0552 211 FDAIQAAKARGIDVVLIDTAGRLHN 235 (340)
T ss_pred HHHHHHHHHcCCCEEEEeCcccccC
Confidence 1123444567887665 9999865
No 296
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.99 E-value=0.51 Score=46.51 Aligned_cols=49 Identities=12% Similarity=0.188 Sum_probs=27.5
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
..+++.|++|+|||... -.+.+.+..+. .+.+++++ +...+..++...+
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~-----~~~~v~yi-~~~~~~~~~~~~~ 197 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKN-----PNAKVVYV-TSEKFTNDFVNAL 197 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhC-----CCCeEEEE-EHHHHHHHHHHHH
Confidence 56889999999999332 22333333321 24556665 4455555544433
No 297
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.99 E-value=0.78 Score=42.95 Aligned_cols=101 Identities=17% Similarity=0.143 Sum_probs=46.3
Q ss_pred EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH----HHHHHHhccCCCceEEEE--ECCCchH
Q psy17644 208 IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQI----YNEAKRFGKGYNLSVVCC--YGGGSKW 281 (330)
Q Consensus 208 i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi----~~~~~~l~~~~~~~~~~~--~gg~~~~ 281 (330)
++.++.|+|||.+.++-++.+++..+. +..++++ +|...+... ...+..+... ....... ......
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~-----~~~vi~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~- 72 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP-----GRRVIIA-STYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKII- 72 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS-------EEEEE-ESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEE-
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC-----CcEEEEe-cCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEE-
Confidence 467889999998888777777765421 2444555 665554443 3334444443 1222111 111000
Q ss_pred HHHHHHhCCCeEEEEChHHH--HHHHHcCCCCCCCccEEEeeccccc
Q psy17644 282 DQSKALELGAEIVVGTPGRI--IDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 282 ~~~~~l~~~~dIiV~TP~~L--~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+.+++.|.+.+-..- ..-+. =..+.++|+||+-.+
T Consensus 73 -----~~nG~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~ 109 (384)
T PF03237_consen 73 -----LPNGSRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKV 109 (384)
T ss_dssp -----ETTS-EEEEES-----SHHHHH-----TS--SEEEEESGGGS
T ss_pred -----ecCceEEEEecccccccccccc-----ccccceeeeeecccC
Confidence 145666666552211 11111 146789999998665
No 298
>PRK08840 replicative DNA helicase; Provisional
Probab=92.92 E-value=0.95 Score=44.84 Aligned_cols=115 Identities=16% Similarity=0.090 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEE-ECCCchH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCC-YGGGSKW 281 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~-~gg~~~~ 281 (330)
.|.=+++.|++|.||| +|.+-+..++..+ .+..|+|+..- --..|+...+..... ++....+ .|..+..
T Consensus 216 ~g~LiviaarPg~GKT-afalnia~~~a~~------~~~~v~~fSlE-Ms~~ql~~Rlla~~s--~v~~~~i~~~~l~~~ 285 (464)
T PRK08840 216 GSDLIIVAARPSMGKT-TFAMNLCENAAMD------QDKPVLIFSLE-MPAEQLMMRMLASLS--RVDQTKIRTGQLDDE 285 (464)
T ss_pred CCceEEEEeCCCCchH-HHHHHHHHHHHHh------CCCeEEEEecc-CCHHHHHHHHHHhhC--CCCHHHHhcCCCCHH
Confidence 4444555699999999 4545444444321 24456666532 334555544332211 1211111 2222322
Q ss_pred HHH------HHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 282 DQS------KALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 282 ~~~------~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.+. ..+.....+.|. |+..+...+++-......+.+||||-.+.|-
T Consensus 286 e~~~~~~a~~~l~~~~~l~I~d~~~~ti~~i~~~~r~~~~~~~~~~lvvIDYLql~~ 342 (464)
T PRK08840 286 DWARISSTMGILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSMIMVDYLQLMR 342 (464)
T ss_pred HHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHhcC
Confidence 221 223222345553 3444444332211112258899999988773
No 299
>PRK08760 replicative DNA helicase; Provisional
Probab=92.75 E-value=0.5 Score=46.94 Aligned_cols=113 Identities=16% Similarity=0.060 Sum_probs=56.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ 283 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~ 283 (330)
|.=+++.|++|.||| +|++-+..++... .+..|+|++. -.-..|+...+........... ...|..+..++
T Consensus 229 G~LivIaarPg~GKT-afal~iA~~~a~~------~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i~~~~-i~~g~l~~~e~ 299 (476)
T PRK08760 229 TDLIILAARPAMGKT-TFALNIAEYAAIK------SKKGVAVFSM-EMSASQLAMRLISSNGRINAQR-LRTGALEDEDW 299 (476)
T ss_pred CceEEEEeCCCCChh-HHHHHHHHHHHHh------cCCceEEEec-cCCHHHHHHHHHHhhCCCcHHH-HhcCCCCHHHH
Confidence 344555699999999 5666665555432 2445666643 2334555555544322222111 11222222221
Q ss_pred ------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 284 ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 284 ------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
...+.. ..+.|. |+..+...+++-.. -..+++||||=.+.|-
T Consensus 300 ~~~~~a~~~l~~-~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 300 ARVTGAIKMLKE-TKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHhc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 122333 345554 45555544432111 1357899999888763
No 300
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.68 E-value=0.14 Score=48.07 Aligned_cols=41 Identities=32% Similarity=0.317 Sum_probs=28.0
Q ss_pred CCCCHHHHHhh-hhhcCCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 188 TSPTPIQAQAV-PAALSGRDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 188 ~~pt~iQ~~~i-~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
..+++.|..-+ -++-.+++++++++|||||| .++.+++..+
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKT-t~lnall~~I 167 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKT-TLLNALLDFI 167 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHH-HHHHHHHHhC
Confidence 44566665544 44558899999999999999 3444444443
No 301
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=92.66 E-value=0.41 Score=49.62 Aligned_cols=83 Identities=16% Similarity=0.092 Sum_probs=53.1
Q ss_pred HHHCCCCCCCHHHHHhhhhhcCCC--cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 182 LRKCEYTSPTPIQAQAVPAALSGR--DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 182 l~~~~~~~pt~iQ~~~i~~~~~g~--d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
+.....+.++.-|.+.+..++..+ -+++.|.-|-|||.+.-+.+. .+.... ....++|.+||.+-+..++..
T Consensus 207 l~~l~~T~dQ~~~l~~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~-~~~~~~-----~~~~iiVTAP~~~nv~~Lf~f 280 (758)
T COG1444 207 LYELCLTEDQAEALEILERLLDAPKRALVLTADRGRGKSAALGIALA-AAARLA-----GSVRIIVTAPTPANVQTLFEF 280 (758)
T ss_pred HhhhhcChhHHHHHHHHHHHHcCCCceEEEEcCCCCcHhHHHhHHHH-HHHHhc-----CCceEEEeCCCHHHHHHHHHH
Confidence 334444555555555666666443 466669999999977665542 222211 145889999999999888888
Q ss_pred HHHhccCCCce
Q psy17644 260 AKRFGKGYNLS 270 (330)
Q Consensus 260 ~~~l~~~~~~~ 270 (330)
+.+-....|.+
T Consensus 281 a~~~l~~lg~~ 291 (758)
T COG1444 281 AGKGLEFLGYK 291 (758)
T ss_pred HHHhHHHhCCc
Confidence 76655544443
No 302
>PRK12377 putative replication protein; Provisional
Probab=92.64 E-value=0.42 Score=43.28 Aligned_cols=46 Identities=13% Similarity=0.215 Sum_probs=27.8
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
...+++.|++|+|||.... .+.+++.. .+..| +.++..+|..++..
T Consensus 101 ~~~l~l~G~~GtGKThLa~-AIa~~l~~-------~g~~v-~~i~~~~l~~~l~~ 146 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAA-AIGNRLLA-------KGRSV-IVVTVPDVMSRLHE 146 (248)
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHH-------cCCCe-EEEEHHHHHHHHHH
Confidence 3678999999999993222 23334433 24444 44466677776654
No 303
>PF12846 AAA_10: AAA-like domain
Probab=92.61 E-value=0.38 Score=43.83 Aligned_cols=42 Identities=31% Similarity=0.492 Sum_probs=30.7
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQ 254 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~ 254 (330)
++++++|+||+|||.+.. .++..++. .++.++|+=|..+...
T Consensus 2 ~h~~i~G~tGsGKT~~~~-~l~~~~~~-------~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLK-NLLEQLIR-------RGPRVVIFDPKGDYSP 43 (304)
T ss_pred CeEEEECCCCCcHHHHHH-HHHHHHHH-------cCCCEEEEcCCchHHH
Confidence 578999999999995544 55555555 3678888878766654
No 304
>KOG0344|consensus
Probab=92.60 E-value=2.2 Score=42.70 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=67.5
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---HHHhCC
Q psy17644 214 GSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS---KALELG 290 (330)
Q Consensus 214 GsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~l~~~ 290 (330)
+.|++..-++++.+.+.. +-.|.+||.+-+.+-|.|++.++.. .-++.+.+++|..+..+.- ..++.|
T Consensus 367 F~gse~~K~lA~rq~v~~------g~~PP~lIfVQs~eRak~L~~~L~~---~~~i~v~vIh~e~~~~qrde~~~~FR~g 437 (593)
T KOG0344|consen 367 FCGSEKGKLLALRQLVAS------GFKPPVLIFVQSKERAKQLFEELEI---YDNINVDVIHGERSQKQRDETMERFRIG 437 (593)
T ss_pred eeecchhHHHHHHHHHhc------cCCCCeEEEEecHHHHHHHHHHhhh---ccCcceeeEecccchhHHHHHHHHHhcc
Confidence 566665555555444433 2468899999999999999999873 3467888899987655443 333333
Q ss_pred -CeEEEEChHHHHHHHHcCCCCCCCccEEEeecc
Q psy17644 291 -AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEA 323 (330)
Q Consensus 291 -~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEa 323 (330)
..|+||| +++.++ ++|..+.+||-+..
T Consensus 438 ~IwvLicT-----dll~RG-iDf~gvn~VInyD~ 465 (593)
T KOG0344|consen 438 KIWVLICT-----DLLARG-IDFKGVNLVINYDF 465 (593)
T ss_pred CeeEEEeh-----hhhhcc-ccccCcceEEecCC
Confidence 6899999 566654 78899999998753
No 305
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.50 E-value=0.69 Score=45.28 Aligned_cols=86 Identities=26% Similarity=0.271 Sum_probs=43.0
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc-cc-HHHHHHHHHHHHHhccCCCceEEEEECCCchHHH
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA-PT-RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ 283 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~-Pt-r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~ 283 (330)
-+++++++|+|||.+..--+ .++..+ .+.+++++. -+ |..+. ..++.++...++.+.....+......
T Consensus 101 vi~~vG~~GsGKTTtaakLA-~~l~~~------~g~kV~lV~~D~~R~~a~---~QL~~~a~~~gvp~~~~~~~~~P~~i 170 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLA-YYLKKK------QGKKVLLVACDLYRPAAI---EQLKVLGQQVGVPVFALGKGQSPVEI 170 (428)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHHHHh------CCCeEEEEeccccchHHH---HHHHHHHHhcCCceEecCCCCCHHHH
Confidence 46777999999995433222 222211 244555444 33 43332 23444444455555544433333221
Q ss_pred ----HHH-HhCCCe-EEEEChHHH
Q psy17644 284 ----SKA-LELGAE-IVVGTPGRI 301 (330)
Q Consensus 284 ----~~~-l~~~~d-IiV~TP~~L 301 (330)
... ...+++ |||=||+++
T Consensus 171 ~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 171 ARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcc
Confidence 112 234565 778899975
No 306
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=92.49 E-value=0.28 Score=42.76 Aligned_cols=60 Identities=17% Similarity=0.109 Sum_probs=29.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc--cHHHHHHHHHHHHHhccCCCceEEEEECC
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP--TRELSQQIYNEAKRFGKGYNLSVVCCYGG 277 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P--tr~La~Qi~~~~~~l~~~~~~~~~~~~gg 277 (330)
++++||||+|||.+..=-+.....+ +.++.+++- .|.-|. ++++.+++..++.+......
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~~--------~~~v~lis~D~~R~ga~---eQL~~~a~~l~vp~~~~~~~ 65 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKLK--------GKKVALISADTYRIGAV---EQLKTYAEILGVPFYVARTE 65 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHT--------T--EEEEEESTSSTHHH---HHHHHHHHHHTEEEEESSTT
T ss_pred EEEECCCCCchHhHHHHHHHHHhhc--------cccceeecCCCCCccHH---HHHHHHHHHhccccchhhcc
Confidence 5778999999995533222222211 334444442 344443 33444444446665544433
No 307
>KOG0331|consensus
Probab=92.48 E-value=0.76 Score=45.73 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=55.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC----CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL----GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~----~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|-|+--|.++...+++. +..+.+++|..+..+....|+. .+.|+|||- +-.+.+++..
T Consensus 340 ~~~KvIIFc~tkr~~~~l~~~l~~~----~~~a~~iHGd~sQ~eR~~~L~~FreG~~~vLVATd------VAaRGLDi~d 409 (519)
T KOG0331|consen 340 SEGKVIIFCETKRTCDELARNLRRK----GWPAVAIHGDKSQSERDWVLKGFREGKSPVLVATD------VAARGLDVPD 409 (519)
T ss_pred CCCcEEEEecchhhHHHHHHHHHhc----CcceeeecccccHHHHHHHHHhcccCCcceEEEcc------cccccCCCcc
Confidence 5679999999999999999888875 3678899998887766555542 489999993 2234667888
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
|++||-
T Consensus 410 V~lVIn 415 (519)
T KOG0331|consen 410 VDLVIN 415 (519)
T ss_pred ccEEEe
Confidence 888874
No 308
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=92.47 E-value=0.22 Score=48.09 Aligned_cols=33 Identities=36% Similarity=0.468 Sum_probs=23.6
Q ss_pred hhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhc
Q psy17644 199 PAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQ 232 (330)
Q Consensus 199 ~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~ 232 (330)
|.-...+++++.|.||||||. ++.+++..++.+
T Consensus 10 ~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~ 42 (386)
T PF10412_consen 10 PKDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR 42 (386)
T ss_dssp -GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT
T ss_pred ccchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc
Confidence 444567899999999999995 556778777764
No 309
>PRK09165 replicative DNA helicase; Provisional
Probab=92.42 E-value=0.98 Score=45.15 Aligned_cols=119 Identities=15% Similarity=0.064 Sum_probs=57.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC--------CCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEE
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE--------PGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCY 275 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~--------~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~ 275 (330)
|.=+++.|+||+||| +|.+.+..++..+..+. ...+..|+|++ .-.-..|+...+........... ...
T Consensus 217 g~livIaarpg~GKT-~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s~v~~~~-i~~ 293 (497)
T PRK09165 217 SDLIILAGRPSMGKT-ALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQSEISSSK-IRR 293 (497)
T ss_pred CceEEEEeCCCCChH-HHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhcCCCHHH-Hhc
Confidence 344566699999999 45555555544321100 01256677764 33445566655443322222211 112
Q ss_pred CCCchHHH------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 276 GGGSKWDQ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 276 gg~~~~~~------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
|..+..++ ...+.. ..+.|. |+..+...+++-.. -..+++||||=.+.|-
T Consensus 294 ~~l~~~e~~~l~~a~~~l~~-~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 294 GKISEEDFEKLVDASQELQK-LPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred CCCCHHHHHHHHHHHHHHhc-CCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 22222221 122222 345553 44555554443211 1358899999988764
No 310
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.40 E-value=0.33 Score=43.15 Aligned_cols=14 Identities=29% Similarity=0.361 Sum_probs=12.6
Q ss_pred cEEEEcCCCChhHH
Q psy17644 206 DIIGVAKTGSGKTG 219 (330)
Q Consensus 206 d~i~~a~TGsGKT~ 219 (330)
++|+.||+|.|||.
T Consensus 52 h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 52 HMLFYGPPGLGKTT 65 (233)
T ss_dssp EEEEESSTTSSHHH
T ss_pred eEEEECCCccchhH
Confidence 68999999999993
No 311
>PRK05636 replicative DNA helicase; Provisional
Probab=92.37 E-value=0.46 Score=47.55 Aligned_cols=108 Identities=14% Similarity=0.170 Sum_probs=50.6
Q ss_pred CcE-EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc---ccHHHHHHHHHHHHHhccCCCceEEEEECCC-c
Q psy17644 205 RDI-IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA---PTRELSQQIYNEAKRFGKGYNLSVVCCYGGG-S 279 (330)
Q Consensus 205 ~d~-i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~---Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~-~ 279 (330)
.++ ++.|+||+|||. |.+-++.++..+ .+..|+|++ +..+++.++..... ++....+..|. +
T Consensus 265 G~Liiiaarpg~GKT~-~al~~a~~~a~~------~g~~v~~fSlEMs~~ql~~R~ls~~s------~v~~~~i~~g~l~ 331 (505)
T PRK05636 265 GQMIIVAARPGVGKST-LALDFMRSASIK------HNKASVIFSLEMSKSEIVMRLLSAEA------EVRLSDMRGGKMD 331 (505)
T ss_pred CceEEEEeCCCCCHHH-HHHHHHHHHHHh------CCCeEEEEEeeCCHHHHHHHHHHHhc------CCCHHHHhcCCCC
Confidence 444 556999999994 444444444321 244566663 33444444332211 12111122222 2
Q ss_pred hHHH------HHHHhCCCeEEEE-C----hHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 280 KWDQ------SKALELGAEIVVG-T----PGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 280 ~~~~------~~~l~~~~dIiV~-T----P~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
...+ ...+.. ..+.|. + ...+...+++-.. -..+++||||-.+.|-
T Consensus 332 ~~e~~~~~~a~~~l~~-~~l~I~d~~~~ti~~I~~~~r~~~~-~~~~~lvvIDYLql~~ 388 (505)
T PRK05636 332 EDAWEKLVQRLGKIAQ-APIFIDDSANLTMMEIRSKARRLKQ-KHDLKLIVVDYLQLMS 388 (505)
T ss_pred HHHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcC
Confidence 2222 122222 445553 3 3334333332111 1358899999998774
No 312
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=92.34 E-value=2.4 Score=39.91 Aligned_cols=119 Identities=19% Similarity=0.246 Sum_probs=63.9
Q ss_pred CCCCCHHHHHhhhhhc----CCC---cEEEEcCCCChhHHHHHHHHHHHHHhcCCC-----------CCCCCCeEEEE--
Q psy17644 187 YTSPTPIQAQAVPAAL----SGR---DIIGVAKTGSGKTGAFIWPMLVHIMDQKEL-----------EPGDGPMGLIL-- 246 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~----~g~---d~i~~a~TGsGKT~a~llp~l~~i~~~~~~-----------~~~~~~~vLil-- 246 (330)
+..++|+|..++..+. +|| -+++.|+.|.||+. +...+...++..... ..++.|-..+|
T Consensus 2 ~~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~-lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 2 TSAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRA-VALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred CccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHH-HHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEec
Confidence 3467889988887765 444 58899999999983 333345566654311 12345777777
Q ss_pred cccH-------H-HHHHHHHHHHHhcc---CCCceEEEEECCCchHH--H---HHHHhC---CCeEEEEC--hHHHHHHH
Q psy17644 247 APTR-------E-LSQQIYNEAKRFGK---GYNLSVVCCYGGGSKWD--Q---SKALEL---GAEIVVGT--PGRIIDMV 305 (330)
Q Consensus 247 ~Ptr-------~-La~Qi~~~~~~l~~---~~~~~~~~~~gg~~~~~--~---~~~l~~---~~dIiV~T--P~~L~~~l 305 (330)
.|.. . .+.||.+....+.. ..+.+++++........ . .+.+.. ++-+|+.| |.+|+.-+
T Consensus 81 ~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 6642 1 24444433333221 22456666655443222 1 222222 34444444 67776555
Q ss_pred H
Q psy17644 306 K 306 (330)
Q Consensus 306 ~ 306 (330)
.
T Consensus 161 r 161 (319)
T PRK08769 161 R 161 (319)
T ss_pred H
Confidence 4
No 313
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=92.33 E-value=0.94 Score=44.25 Aligned_cols=72 Identities=14% Similarity=0.222 Sum_probs=52.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
...++||.|+|++.|..++..+... ++.+..+.|+.+..++... ++. ..+||||| +.+. ..+++..
T Consensus 244 ~~~~~lVF~~s~~~~~~l~~~L~~~----~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaT-----d~~~-~GiDip~ 313 (434)
T PRK11192 244 EVTRSIVFVRTRERVHELAGWLRKA----GINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVAT-----DVAA-RGIDIDD 313 (434)
T ss_pred CCCeEEEEeCChHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEc-----cccc-cCccCCC
Confidence 3578999999999999999988764 6788888888876555433 333 47899999 2332 3455777
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+.+||.
T Consensus 314 v~~VI~ 319 (434)
T PRK11192 314 VSHVIN 319 (434)
T ss_pred CCEEEE
Confidence 777763
No 314
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.29 E-value=0.38 Score=42.95 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=34.3
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
-.|.-+++.+++|+|||.. ++.++....+ ++.++++++ +.+-..++...+..++
T Consensus 22 ~~g~~~~i~G~~G~GKTtl-~~~~~~~~~~-------~g~~~~yi~-~e~~~~~~~~~~~~~g 75 (230)
T PRK08533 22 PAGSLILIEGDESTGKSIL-SQRLAYGFLQ-------NGYSVSYVS-TQLTTTEFIKQMMSLG 75 (230)
T ss_pred CCCcEEEEECCCCCCHHHH-HHHHHHHHHh-------CCCcEEEEe-CCCCHHHHHHHHHHhC
Confidence 3577788889999999943 3334444433 356778887 4444456666665553
No 315
>PRK06526 transposase; Provisional
Probab=92.22 E-value=0.42 Score=43.43 Aligned_cols=49 Identities=14% Similarity=0.175 Sum_probs=28.9
Q ss_pred hhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q psy17644 199 PAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQI 256 (330)
Q Consensus 199 ~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi 256 (330)
..+-.+++++++||+|+|||..... +...+.. .|.+|+++ ....++.++
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~a-l~~~a~~-------~g~~v~f~-t~~~l~~~l 141 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAIG-LGIRACQ-------AGHRVLFA-TAAQWVARL 141 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHHH-HHHHHHH-------CCCchhhh-hHHHHHHHH
Confidence 3344778999999999999944332 2223332 24455554 334455555
No 316
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.18 E-value=0.37 Score=48.37 Aligned_cols=112 Identities=15% Similarity=0.054 Sum_probs=55.7
Q ss_pred EEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH-hccCCCceEEEEECCCchH-HHH--
Q psy17644 209 GVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR-FGKGYNLSVVCCYGGGSKW-DQS-- 284 (330)
Q Consensus 209 ~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~-l~~~~~~~~~~~~gg~~~~-~~~-- 284 (330)
+...||||||++..--+| +.+++ .-..-|+.|............+.. ++..+=..-...++|.... ...
T Consensus 2 f~matgsgkt~~ma~lil-~~y~k------gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~ 74 (812)
T COG3421 2 FEMATGSGKTLVMAGLIL-ECYKK------GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNN 74 (812)
T ss_pred cccccCCChhhHHHHHHH-HHHHh------chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecc
Confidence 456899999976544333 44443 123457777665555444333221 0000000001111111100 000
Q ss_pred -HHHhCCCeEEEEChHHHHHHHHcCC---C---CCCCccE-EEeecccccC
Q psy17644 285 -KALELGAEIVVGTPGRIIDMVKMGA---T---KLNRVTF-LVLDEADRMF 327 (330)
Q Consensus 285 -~~l~~~~dIiV~TP~~L~~~l~~~~---~---~l~~i~~-lVvDEad~ll 327 (330)
.....+..|.++|-.+|...+.+.. + ++.+..+ ++-||||+|-
T Consensus 75 fsehnd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 75 FSEHNDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred cCccCCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 1123357899999999988775432 2 2444444 4679999974
No 317
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=92.05 E-value=0.61 Score=41.29 Aligned_cols=48 Identities=17% Similarity=0.227 Sum_probs=27.0
Q ss_pred CcEEEEcCCCChhHHHHHHHHH-HHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPML-VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l-~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
.-+++.|++|+|||. |+.++ +.+.+.. .+.+|+++... +.+..+...+
T Consensus 35 ~~l~l~G~~G~GKTH--LL~Ai~~~~~~~~-----~~~~v~y~~~~-~f~~~~~~~~ 83 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTH--LLQAIANEAQKQH-----PGKRVVYLSAE-EFIREFADAL 83 (219)
T ss_dssp SEEEEEESTTSSHHH--HHHHHHHHHHHHC-----TTS-EEEEEHH-HHHHHHHHHH
T ss_pred CceEEECCCCCCHHH--HHHHHHHHHHhcc-----ccccceeecHH-HHHHHHHHHH
Confidence 357888999999995 33333 3443321 35677776443 4444444433
No 318
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=91.99 E-value=0.51 Score=46.40 Aligned_cols=80 Identities=15% Similarity=0.072 Sum_probs=53.7
Q ss_pred HHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 178 LMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 178 l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
++..+.+ ++..+...|+.+.-..-.|+- .+.+-.|||||...++-+ .++..++ ..-+++|.+=|+.|+.++.
T Consensus 152 ~l~~ies-kIanfD~~Q~kaa~~~~~G~q-rIrGLAGSGKT~~La~Ka-a~lh~kn-----Pd~~I~~Tfftk~L~s~~r 223 (660)
T COG3972 152 LLDTIES-KIANFDTDQTKAAFQSGFGKQ-RIRGLAGSGKTELLAHKA-AELHSKN-----PDSRIAFTFFTKILASTMR 223 (660)
T ss_pred HHHHHHH-HHhcccchhheeeeecCCchh-hhhcccCCCchhHHHHHH-HHHhcCC-----CCceEEEEeehHHHHHHHH
Confidence 4444433 344556678777666666666 567778999996544333 3333322 3568899999999999999
Q ss_pred HHHHHhcc
Q psy17644 258 NEAKRFGK 265 (330)
Q Consensus 258 ~~~~~l~~ 265 (330)
..+.+|+.
T Consensus 224 ~lv~~F~f 231 (660)
T COG3972 224 TLVPEFFF 231 (660)
T ss_pred HHHHHHHH
Confidence 98888764
No 319
>PRK10867 signal recognition particle protein; Provisional
Probab=91.94 E-value=0.76 Score=45.02 Aligned_cols=86 Identities=24% Similarity=0.256 Sum_probs=42.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA--PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ 283 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~--Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~ 283 (330)
-+++++++|+|||.+..--+ .++..+ .+.++++++ +.|..+. +.++.++...++.+.....+.+....
T Consensus 102 vI~~vG~~GsGKTTtaakLA-~~l~~~------~G~kV~lV~~D~~R~aa~---eQL~~~a~~~gv~v~~~~~~~dp~~i 171 (433)
T PRK10867 102 VIMMVGLQGAGKTTTAGKLA-KYLKKK------KKKKVLLVAADVYRPAAI---EQLKTLGEQIGVPVFPSGDGQDPVDI 171 (433)
T ss_pred EEEEECCCCCcHHHHHHHHH-HHHHHh------cCCcEEEEEccccchHHH---HHHHHHHhhcCCeEEecCCCCCHHHH
Confidence 46677999999995433222 233221 145555554 2344433 23344444456655443222232221
Q ss_pred H----H-HHhCCCe-EEEEChHHH
Q psy17644 284 S----K-ALELGAE-IVVGTPGRI 301 (330)
Q Consensus 284 ~----~-~l~~~~d-IiV~TP~~L 301 (330)
. . ....+++ |||=||+++
T Consensus 172 ~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 172 AKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCc
Confidence 1 1 1223455 677799976
No 320
>PRK04328 hypothetical protein; Provisional
Probab=91.92 E-value=0.39 Score=43.39 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=34.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.-+++.+++|+|||. +++.++...++ ++-+++|++ +.+-..++.+.+..++
T Consensus 22 ~gs~ili~G~pGsGKT~-l~~~fl~~~~~-------~ge~~lyis-~ee~~~~i~~~~~~~g 74 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSI-FSQQFLWNGLQ-------MGEPGVYVA-LEEHPVQVRRNMRQFG 74 (249)
T ss_pred CCcEEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCcEEEEE-eeCCHHHHHHHHHHcC
Confidence 46778889999999994 33333433333 355667765 6566677777777764
No 321
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=91.91 E-value=0.53 Score=42.79 Aligned_cols=37 Identities=16% Similarity=0.076 Sum_probs=25.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
.|.-+++.+++|+|||. |++.++.+... ++-+++|++
T Consensus 35 ~gs~~lI~G~pGtGKT~-l~~qf~~~~a~-------~Ge~vlyis 71 (259)
T TIGR03878 35 AYSVINITGVSDTGKSL-MVEQFAVTQAS-------RGNPVLFVT 71 (259)
T ss_pred CCcEEEEEcCCCCCHHH-HHHHHHHHHHh-------CCCcEEEEE
Confidence 56778889999999994 45444444333 356777776
No 322
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.86 E-value=0.24 Score=45.14 Aligned_cols=29 Identities=31% Similarity=0.353 Sum_probs=20.5
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
+..+..++++|+||||||. ++-.++..+-
T Consensus 124 v~~~~~ili~G~tGSGKTT-~l~all~~i~ 152 (270)
T PF00437_consen 124 VRGRGNILISGPTGSGKTT-LLNALLEEIP 152 (270)
T ss_dssp HHTTEEEEEEESTTSSHHH-HHHHHHHHCH
T ss_pred cccceEEEEECCCccccch-HHHHHhhhcc
Confidence 3467899999999999993 3344454443
No 323
>PRK06321 replicative DNA helicase; Provisional
Probab=91.73 E-value=1.2 Score=44.13 Aligned_cols=111 Identities=14% Similarity=0.088 Sum_probs=55.7
Q ss_pred CcE-EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEE-EECCCchHH
Q psy17644 205 RDI-IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVC-CYGGGSKWD 282 (330)
Q Consensus 205 ~d~-i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~-~~gg~~~~~ 282 (330)
.++ ++.|++|.||| +|++.+..++... .+..|+|++ .-.-..|+...+..... ++...- ..|..+...
T Consensus 226 G~LiiiaarPgmGKT-afal~ia~~~a~~------~g~~v~~fS-LEMs~~ql~~Rlla~~s--~v~~~~i~~~~l~~~e 295 (472)
T PRK06321 226 SNLMILAARPAMGKT-ALALNIAENFCFQ------NRLPVGIFS-LEMTVDQLIHRIICSRS--EVESKKISVGDLSGRD 295 (472)
T ss_pred CcEEEEEeCCCCChH-HHHHHHHHHHHHh------cCCeEEEEe-ccCCHHHHHHHHHHhhc--CCCHHHhhcCCCCHHH
Confidence 454 55699999999 5666666665432 244556554 22334455544432211 222111 123333322
Q ss_pred HH------HHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 283 QS------KALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 283 ~~------~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+. ..+.. ..+.|- |...+...+++-.. -..+++||||-.+.|-
T Consensus 296 ~~~~~~a~~~l~~-~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 296 FQRIVSVVNEMQE-HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHHc-CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 21 23333 346664 44455544433211 1358899999988774
No 324
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=91.64 E-value=1.2 Score=43.39 Aligned_cols=71 Identities=17% Similarity=0.164 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---hC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---EL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
..++||.|+|+..|..++..+... +..+..++|+....++...+ +. ..+|||||- .+. ..+++..+
T Consensus 255 ~~~~lVF~~t~~~~~~l~~~L~~~----g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTd-----v~~-rGiDip~v 324 (423)
T PRK04837 255 PDRAIIFANTKHRCEEIWGHLAAD----GHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATD-----VAA-RGLHIPAV 324 (423)
T ss_pred CCeEEEEECCHHHHHHHHHHHHhC----CCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEec-----hhh-cCCCcccc
Confidence 568999999999999988888764 67888888887765543333 33 479999993 333 35567777
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 325 ~~VI~ 329 (423)
T PRK04837 325 THVFN 329 (423)
T ss_pred CEEEE
Confidence 77764
No 325
>PTZ00110 helicase; Provisional
Probab=91.64 E-value=1.4 Score=44.57 Aligned_cols=72 Identities=15% Similarity=0.265 Sum_probs=51.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHH---HHhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK---ALEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~---~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+.-|..+...++.. ++.+.+++|+....+... .++. ...|||||- .+. ..+++..
T Consensus 376 ~~~k~LIF~~t~~~a~~l~~~L~~~----g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTd-----v~~-rGIDi~~ 445 (545)
T PTZ00110 376 DGDKILIFVETKKGADFLTKELRLD----GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATD-----VAS-RGLDVKD 445 (545)
T ss_pred cCCeEEEEecChHHHHHHHHHHHHc----CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcc-----hhh-cCCCccc
Confidence 4679999999999999998888753 567788888887655433 3333 468999993 222 3456677
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
|.+||.
T Consensus 446 v~~VI~ 451 (545)
T PTZ00110 446 VKYVIN 451 (545)
T ss_pred CCEEEE
Confidence 777764
No 326
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.63 E-value=0.51 Score=40.52 Aligned_cols=31 Identities=35% Similarity=0.405 Sum_probs=23.9
Q ss_pred CCHHHHHhhhhhc-CCCcEEEEcCCCChhHHH
Q psy17644 190 PTPIQAQAVPAAL-SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 190 pt~iQ~~~i~~~~-~g~d~i~~a~TGsGKT~a 220 (330)
.++-|...+...+ .|..++++++||||||..
T Consensus 10 ~~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTl 41 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTL 41 (186)
T ss_pred CCHHHHHHHHHHHhCCCEEEEECCCCCCHHHH
Confidence 4566777776655 678899999999999943
No 327
>KOG3089|consensus
Probab=91.55 E-value=0.035 Score=48.44 Aligned_cols=33 Identities=39% Similarity=0.704 Sum_probs=30.0
Q ss_pred CCeEEEEChHHHHHHHHcCCCCCCCccEEEeec
Q psy17644 290 GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDE 322 (330)
Q Consensus 290 ~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDE 322 (330)
..++-||||+|+..+++...+.++.+.++|+|=
T Consensus 196 ~v~~gIgTp~Ri~~lv~~~~f~~~~lk~iIlD~ 228 (271)
T KOG3089|consen 196 VVHLGIGTPGRIKELVKQGGFNLSPLKFIILDW 228 (271)
T ss_pred ceeEeecCcHHHHHHHHhcCCCCCcceeEEeec
Confidence 468889999999999999889999999999984
No 328
>PHA02535 P terminase ATPase subunit; Provisional
Probab=91.52 E-value=0.73 Score=46.52 Aligned_cols=86 Identities=15% Similarity=0.071 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELS 253 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La 253 (330)
++......|...-...+.++|+..+..-...+.-++.-.-=.|||..|..-++...+.. |-..++|.|++..|
T Consensus 123 ~s~~~~~~l~~~~~~~l~~YQ~~W~~~~~~~r~r~ilKSRQiG~T~~fA~EA~~dal~~-------G~nqiflSas~~QA 195 (581)
T PHA02535 123 ISDEQTEKLIEAFLDSLFDYQKHWYRAGLHHRTRNILKSRQIGATYYFAREALEDALLT-------GRNQIFLSASKAQA 195 (581)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCccccceeeEeeecccchHHHHHHHHHHHHHhc-------CCceEEECCCHHHH
Confidence 44444455544444567799999886533345555555556789999888888777653 45679999999999
Q ss_pred HHHHHHHHHhccC
Q psy17644 254 QQIYNEAKRFGKG 266 (330)
Q Consensus 254 ~Qi~~~~~~l~~~ 266 (330)
......+..+++.
T Consensus 196 ~~f~~yi~~~a~~ 208 (581)
T PHA02535 196 HVFKQYIIAFARE 208 (581)
T ss_pred HHHHHHHHHHHHh
Confidence 9988888888654
No 329
>KOG0333|consensus
Probab=91.46 E-value=1.1 Score=44.41 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=52.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
..|.+||.+.|..-|.-+...+.+. +.+++.++||....+.... ++. ..+|+|||-- --..++..+
T Consensus 516 ~~ppiIIFvN~kk~~d~lAk~LeK~----g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDv------AgRGIDIpn 585 (673)
T KOG0333|consen 516 FDPPIIIFVNTKKGADALAKILEKA----GYKVTTLHGGKSQEQRENALADFREGTGDILVATDV------AGRGIDIPN 585 (673)
T ss_pred CCCCEEEEEechhhHHHHHHHHhhc----cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecc------cccCCCCCc
Confidence 4688999999999998888888876 5789999999987665444 334 5799999932 122445666
Q ss_pred ccEEE
Q psy17644 315 VTFLV 319 (330)
Q Consensus 315 i~~lV 319 (330)
|.+||
T Consensus 586 VSlVi 590 (673)
T KOG0333|consen 586 VSLVI 590 (673)
T ss_pred cceee
Confidence 66654
No 330
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=91.43 E-value=0.25 Score=48.08 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=22.8
Q ss_pred hhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 198 VPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 198 i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
+|.-...+++++.|+||||||.+ +..++..++.
T Consensus 36 ~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~ 68 (410)
T cd01127 36 FPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRA 68 (410)
T ss_pred CCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHh
Confidence 34444568999999999999964 4445555544
No 331
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.40 E-value=0.2 Score=51.80 Aligned_cols=49 Identities=22% Similarity=0.161 Sum_probs=35.6
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
++++++|+||||||..|++|-|... ...+||+=|--++...+....++.
T Consensus 140 ~hvlviApTgSGKgvg~VIPnLL~~----------~gS~VV~DpKGE~~~~Ta~~R~~~ 188 (670)
T PRK13850 140 PHSLVVAPTRAGKGVGVVIPTLLTF----------KGSVIALDVKGELFELTSRARKAS 188 (670)
T ss_pred ceEEEEecCCCCceeeehHhHHhcC----------CCCEEEEeCCchHHHHHHHHHHhC
Confidence 4889999999999999999987542 235677777777766555544443
No 332
>PRK09183 transposase/IS protein; Provisional
Probab=91.33 E-value=0.55 Score=42.76 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=28.5
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQI 256 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi 256 (330)
+-.|.++++.||+|+|||.... ++.+.... .|..++++ +..+|..++
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~--al~~~a~~------~G~~v~~~-~~~~l~~~l 145 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI--ALGYEAVR------AGIKVRFT-TAADLLLQL 145 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH--HHHHHHHH------cCCeEEEE-eHHHHHHHH
Confidence 4578899999999999994333 22222221 35566655 445565443
No 333
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.33 E-value=1.5 Score=38.00 Aligned_cols=89 Identities=21% Similarity=0.172 Sum_probs=51.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA 286 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~ 286 (330)
.++++++.||||...+--+-++.. .+-++++..|-..- ++ +...+...-|...
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~--------~g~~v~vfkp~iD~---------R~----~~~~V~Sr~G~~~------ 59 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE--------AGMKVLVFKPAIDT---------RY----GVGKVSSRIGLSS------ 59 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH--------cCCeEEEEeccccc---------cc----ccceeeeccCCcc------
Confidence 467899999999644433333222 46788888885322 11 1222222112211
Q ss_pred HhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 287 LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 287 l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.-++|-++..+...+........ +.+|.||||+-+-
T Consensus 60 ----~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~~ 95 (201)
T COG1435 60 ----EAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFFD 95 (201)
T ss_pred ----cceecCChHHHHHHHHhcccCCC-cCEEEEehhHhCC
Confidence 24667777788887765433332 8899999998653
No 334
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.17 E-value=2.5 Score=35.45 Aligned_cols=84 Identities=23% Similarity=0.271 Sum_probs=39.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc-ccH-HHHHHHHHHHHHhccCCCceEEEEECCCchHH--
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA-PTR-ELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD-- 282 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~-Ptr-~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~-- 282 (330)
+++.+++|+|||.... -+...+.. .+.+++++. .++ .-. ...+..++...++.+...........
T Consensus 3 ~~~~G~~G~GKTt~~~-~la~~~~~-------~g~~v~~i~~D~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 71 (173)
T cd03115 3 ILLVGLQGVGKTTTAA-KLALYLKK-------KGKKVLLVAADTYRPAA---IEQLRVLGEQVGVPVFEEGEGKDPVSIA 71 (173)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHHH-------CCCcEEEEEcCCCChHH---HHHHHHhcccCCeEEEecCCCCCHHHHH
Confidence 4677999999995432 22223322 245555443 432 222 22344444444554443322222211
Q ss_pred --HH-HHHhCCCe-EEEEChHHH
Q psy17644 283 --QS-KALELGAE-IVVGTPGRI 301 (330)
Q Consensus 283 --~~-~~l~~~~d-IiV~TP~~L 301 (330)
.. .....+.+ |||=||+..
T Consensus 72 ~~~~~~~~~~~~d~viiDt~g~~ 94 (173)
T cd03115 72 KRAIEHAREENFDVVIVDTAGRL 94 (173)
T ss_pred HHHHHHHHhCCCCEEEEECcccc
Confidence 11 12334554 677788875
No 335
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=91.15 E-value=1.7 Score=44.73 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=12.7
Q ss_pred CCccEEEeecccccC
Q psy17644 313 NRVTFLVLDEADRMF 327 (330)
Q Consensus 313 ~~i~~lVvDEad~ll 327 (330)
.+.+++||||||+|-
T Consensus 118 g~~KV~IIDEah~Ls 132 (647)
T PRK07994 118 GRFKVYLIDEVHMLS 132 (647)
T ss_pred CCCEEEEEechHhCC
Confidence 467899999999885
No 336
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.09 E-value=1.4 Score=42.49 Aligned_cols=17 Identities=35% Similarity=0.315 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|+-.++.|+.|.|||.
T Consensus 168 kGQR~lIvgppGvGKTT 184 (416)
T PRK09376 168 KGQRGLIVAPPKAGKTV 184 (416)
T ss_pred cCceEEEeCCCCCChhH
Confidence 78899999999999994
No 337
>PRK10436 hypothetical protein; Provisional
Probab=91.03 E-value=0.89 Score=44.95 Aligned_cols=38 Identities=32% Similarity=0.365 Sum_probs=22.5
Q ss_pred HHHHHhhhhhc--CCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 192 PIQAQAVPAAL--SGRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 192 ~iQ~~~i~~~~--~g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
+.|...+..++ .+--++++++||||||.+ +..+|.++.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTt-L~a~l~~~~ 243 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVT-LYSALQTLN 243 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHH-HHHHHHhhC
Confidence 34444444433 233477889999999943 334566653
No 338
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=90.99 E-value=0.5 Score=42.83 Aligned_cols=54 Identities=26% Similarity=0.405 Sum_probs=38.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
.|+.+++.+++|+||| .|++.++..... .|-+++++ -+.+...++.+.+..++-
T Consensus 22 ~g~~~lI~G~pGsGKT-~f~~qfl~~~~~-------~ge~vlyv-s~~e~~~~l~~~~~~~g~ 75 (260)
T COG0467 22 RGSVVLITGPPGTGKT-IFALQFLYEGAR-------EGEPVLYV-STEESPEELLENARSFGW 75 (260)
T ss_pred CCcEEEEEcCCCCcHH-HHHHHHHHHHHh-------cCCcEEEE-EecCCHHHHHHHHHHcCC
Confidence 5788999999999999 566666655544 24445554 566777888888877644
No 339
>PTZ00293 thymidine kinase; Provisional
Probab=90.98 E-value=1.1 Score=39.40 Aligned_cols=39 Identities=13% Similarity=0.106 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr 250 (330)
|+=.++.||++||||. -||-.+.+... .+.+++++-|..
T Consensus 4 G~i~vi~GpMfSGKTt-eLLr~i~~y~~-------ag~kv~~~kp~~ 42 (211)
T PTZ00293 4 GTISVIIGPMFSGKTT-ELMRLVKRFTY-------SEKKCVVIKYSK 42 (211)
T ss_pred eEEEEEECCCCChHHH-HHHHHHHHHHH-------cCCceEEEEecc
Confidence 4445778999999994 34444443332 356788888853
No 340
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.91 E-value=1.1 Score=47.46 Aligned_cols=15 Identities=20% Similarity=0.381 Sum_probs=12.7
Q ss_pred CCccEEEeecccccC
Q psy17644 313 NRVTFLVLDEADRMF 327 (330)
Q Consensus 313 ~~i~~lVvDEad~ll 327 (330)
.+.+++||||||+|-
T Consensus 118 gk~KViIIDEAh~LT 132 (944)
T PRK14949 118 GRFKVYLIDEVHMLS 132 (944)
T ss_pred CCcEEEEEechHhcC
Confidence 467899999999984
No 341
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=90.86 E-value=1.1 Score=42.82 Aligned_cols=31 Identities=19% Similarity=0.375 Sum_probs=21.0
Q ss_pred hcCCC---cEEEEcCCCChhHHHHHHHHHHHHHhc
Q psy17644 201 ALSGR---DIIGVAKTGSGKTGAFIWPMLVHIMDQ 232 (330)
Q Consensus 201 ~~~g~---d~i~~a~TGsGKT~a~llp~l~~i~~~ 232 (330)
+.+|+ -+++.|+.|.|||. +...+..+++..
T Consensus 39 ~~~grl~ha~L~~G~~G~GKtt-lA~~lA~~Llc~ 72 (351)
T PRK09112 39 YREGKLHHALLFEGPEGIGKAT-LAFHLANHILSH 72 (351)
T ss_pred HHcCCCCeeEeeECCCCCCHHH-HHHHHHHHHcCC
Confidence 34555 58899999999983 333455666663
No 342
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.83 E-value=1.2 Score=44.70 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=13.9
Q ss_pred CcEEEEcCCCChhHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~ 221 (330)
+.++++|+.|+|||.+.
T Consensus 44 ~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA 60 (507)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999543
No 343
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=90.79 E-value=1.9 Score=42.49 Aligned_cols=72 Identities=11% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
...++||.|+|+.-|..++..+... ++.+..++|+.+....... ++. ..+|||||- .+. ..+++..
T Consensus 244 ~~~~~lVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~iLVaTd-----v~~-rGiDip~ 313 (456)
T PRK10590 244 NWQQVLVFTRTKHGANHLAEQLNKD----GIRSAAIHGNKSQGARTRALADFKSGDIRVLVATD-----IAA-RGLDIEE 313 (456)
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcc-----HHh-cCCCccc
Confidence 3568999999999999998888764 5778888988876554333 333 478999993 333 3456677
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
|.+||.
T Consensus 314 v~~VI~ 319 (456)
T PRK10590 314 LPHVVN 319 (456)
T ss_pred CCEEEE
Confidence 776664
No 344
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=90.77 E-value=0.35 Score=43.52 Aligned_cols=23 Identities=35% Similarity=0.580 Sum_probs=17.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
.++++|++||||| .+++-+|.++
T Consensus 15 r~viIG~sGSGKT-~li~~lL~~~ 37 (241)
T PF04665_consen 15 RMVIIGKSGSGKT-TLIKSLLYYL 37 (241)
T ss_pred eEEEECCCCCCHH-HHHHHHHHhh
Confidence 6789999999999 5565566554
No 345
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=90.75 E-value=1.5 Score=43.22 Aligned_cols=72 Identities=10% Similarity=0.163 Sum_probs=51.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
..++||.|+|+.-|..++..+... +..+..++|+....++... +++ ..+|+|||- .+. ..+++..+
T Consensus 242 ~~~~lVF~~t~~~~~~l~~~L~~~----~~~v~~~hg~~~~~eR~~~l~~F~~g~~~vLVaTd-----v~~-rGiDi~~v 311 (460)
T PRK11776 242 PESCVVFCNTKKECQEVADALNAQ----GFSALALHGDLEQRDRDQVLVRFANRSCSVLVATD-----VAA-RGLDIKAL 311 (460)
T ss_pred CCceEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEec-----ccc-cccchhcC
Confidence 457899999999999999988765 5788889998876554333 333 478999992 222 34556677
Q ss_pred cEEEee
Q psy17644 316 TFLVLD 321 (330)
Q Consensus 316 ~~lVvD 321 (330)
.+||.-
T Consensus 312 ~~VI~~ 317 (460)
T PRK11776 312 EAVINY 317 (460)
T ss_pred CeEEEe
Confidence 776653
No 346
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.74 E-value=0.52 Score=43.07 Aligned_cols=38 Identities=26% Similarity=0.308 Sum_probs=22.7
Q ss_pred HHHHHhhhhhc-CC-CcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 192 PIQAQAVPAAL-SG-RDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 192 ~iQ~~~i~~~~-~g-~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
+.|.+.+..++ .. .-++++++||||||. ++-.++.++.
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT-~l~all~~i~ 105 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTT-TLYSALSELN 105 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHH-HHHHHHhhhC
Confidence 44555554433 23 357788999999993 3344555543
No 347
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.69 E-value=0.35 Score=42.03 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=15.3
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
+++++|||||||.. +..++.++.
T Consensus 4 ilI~GptGSGKTTl-l~~ll~~~~ 26 (198)
T cd01131 4 VLVTGPTGSGKSTT-LAAMIDYIN 26 (198)
T ss_pred EEEECCCCCCHHHH-HHHHHHHhh
Confidence 57789999999943 333444443
No 348
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=90.65 E-value=3.2 Score=44.16 Aligned_cols=73 Identities=12% Similarity=0.178 Sum_probs=54.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC----CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL----GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~----~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+..+||.+|++.-+.+++..+++... .++.+..++|+.+..++...+.. ...|||||. +.. ..+.+..|
T Consensus 209 ~g~iLVFlpg~~eI~~l~~~L~~~~~-~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATn-----IAE-rgItIp~V 281 (819)
T TIGR01970 209 TGSILVFLPGQAEIRRVQEQLAERLD-SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATN-----IAE-TSLTIEGI 281 (819)
T ss_pred CCcEEEEECCHHHHHHHHHHHHhhcC-CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecc-----hHh-hcccccCc
Confidence 46799999999999999998876322 36788899999998887766653 258999994 333 34556677
Q ss_pred cEEE
Q psy17644 316 TFLV 319 (330)
Q Consensus 316 ~~lV 319 (330)
.+||
T Consensus 282 ~~VI 285 (819)
T TIGR01970 282 RVVI 285 (819)
T ss_pred eEEE
Confidence 7655
No 349
>PF13173 AAA_14: AAA domain
Probab=90.50 E-value=1.2 Score=35.61 Aligned_cols=17 Identities=35% Similarity=0.372 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
+++-+++.|+.|+|||.
T Consensus 1 n~~~~~l~G~R~vGKTt 17 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTT 17 (128)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 35667888999999993
No 350
>PHA00729 NTP-binding motif containing protein
Probab=90.42 E-value=1.1 Score=39.96 Aligned_cols=14 Identities=43% Similarity=0.527 Sum_probs=12.6
Q ss_pred cEEEEcCCCChhHH
Q psy17644 206 DIIGVAKTGSGKTG 219 (330)
Q Consensus 206 d~i~~a~TGsGKT~ 219 (330)
++++.|++|+|||.
T Consensus 19 nIlItG~pGvGKT~ 32 (226)
T PHA00729 19 SAVIFGKQGSGKTT 32 (226)
T ss_pred EEEEECCCCCCHHH
Confidence 68999999999993
No 351
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.41 E-value=1 Score=50.68 Aligned_cols=63 Identities=22% Similarity=0.222 Sum_probs=45.3
Q ss_pred CCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHH--HHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 189 SPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAF--IWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~--llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
.+++-|+.++..++.. +-+++.+..|+|||.+. ++-++..+.. ..+..++.++||-..+..+.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e------~~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPE------SERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhh------ccCceEEEEechHHHHHHHH
Confidence 6899999999999855 66777899999999442 2333332222 24678899999987776653
No 352
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=90.40 E-value=2.1 Score=43.01 Aligned_cols=82 Identities=13% Similarity=0.281 Sum_probs=56.6
Q ss_pred HHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---h-CCCeEEEECh
Q psy17644 223 WPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---E-LGAEIVVGTP 298 (330)
Q Consensus 223 lp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiV~TP 298 (330)
+.+|.+++... ...++||.|.|+..|..+...+... |+++..++|+.......+.+ + ...+|+|||-
T Consensus 261 ~~~L~~ll~~~-----~~~~~IVF~~tk~~~~~l~~~l~~~----g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTD 331 (513)
T COG0513 261 LELLLKLLKDE-----DEGRVIVFVRTKRLVEELAESLRKR----GFKVAALHGDLPQEERDRALEKFKDGELRVLVATD 331 (513)
T ss_pred HHHHHHHHhcC-----CCCeEEEEeCcHHHHHHHHHHHHHC----CCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEec
Confidence 34455555532 2347999999999999988777776 58899999998876654433 2 2589999994
Q ss_pred HHHHHHHHcCCCCCCCccEEE
Q psy17644 299 GRIIDMVKMGATKLNRVTFLV 319 (330)
Q Consensus 299 ~~L~~~l~~~~~~l~~i~~lV 319 (330)
.. .+.+++..+.+||
T Consensus 332 -----va-aRGiDi~~v~~Vi 346 (513)
T COG0513 332 -----VA-ARGLDIPDVSHVI 346 (513)
T ss_pred -----hh-hccCCccccceeE
Confidence 22 3355566666665
No 353
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=90.35 E-value=1.1 Score=38.03 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=28.8
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
+++.+++|||||. |...++.. .+.++++++-.+.+-..+...+.+
T Consensus 2 ~li~G~~~sGKS~-~a~~~~~~----------~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSR-FAERLAAE----------LGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHH-HHHHHHHh----------cCCCeEEEEccCcCCHHHHHHHHH
Confidence 4788999999994 33322211 245788888777765555555444
No 354
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.23 E-value=0.95 Score=44.85 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHHHH
Q psy17644 206 DIIGVAKTGSGKTGAF 221 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~ 221 (330)
-++++||.|+|||.+.
T Consensus 42 a~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 42 AYIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3699999999999543
No 355
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.19 E-value=0.83 Score=44.20 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=16.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|+-+++.+++|+|||..
T Consensus 167 ~Gq~~~IvG~~g~GKTtL 184 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVL 184 (415)
T ss_pred CCCEEEEECCCCCChhHH
Confidence 789999999999999953
No 356
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=90.09 E-value=0.79 Score=41.49 Aligned_cols=19 Identities=32% Similarity=0.230 Sum_probs=16.6
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+-.|+-+++.++.|+|||.
T Consensus 13 i~~Gqr~~I~G~~G~GKTT 31 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTT 31 (249)
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3478999999999999994
No 357
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.07 E-value=1.8 Score=41.42 Aligned_cols=15 Identities=27% Similarity=0.262 Sum_probs=12.4
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-+++.||.|+|||..
T Consensus 40 ~~L~~Gp~G~GKTtl 54 (363)
T PRK14961 40 AWLLSGTRGVGKTTI 54 (363)
T ss_pred EEEEecCCCCCHHHH
Confidence 358999999999944
No 358
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=90.01 E-value=0.46 Score=48.89 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=37.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..++++.|+||+|||..+++|.+.. -+.-++|+=|-.|+...+....+++
T Consensus 224 ~~H~Lv~ApTgsGKt~g~VIPnLL~----------~~gS~VV~DpKgEl~~~Ta~~R~~~ 273 (641)
T PRK13822 224 STHGLVFAGSGGFKTTSVVVPTALK----------WGGPLVVLDPSTEVAPMVSEHRRDA 273 (641)
T ss_pred CceEEEEeCCCCCccceEehhhhhc----------CCCCEEEEeCcHHHHHHHHHHHHHC
Confidence 3688999999999999999997642 1345677778888877666655554
No 359
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=89.98 E-value=1 Score=46.09 Aligned_cols=110 Identities=17% Similarity=0.186 Sum_probs=66.9
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC--CceEEEEECCCc
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY--NLSVVCCYGGGS 279 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~--~~~~~~~~gg~~ 279 (330)
+..|-.++..|--.|||.... +++..++..- .|-++++++|.+..+..++++++.+++.. +..+..+.| ..
T Consensus 252 fkqk~tVflVPRR~GKTwivv-~iI~~ll~s~-----~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~ 324 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLV-PLIALALATF-----RGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ET 324 (738)
T ss_pred hhccceEEEecccCCchhhHH-HHHHHHHHhC-----CCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cE
Confidence 345678888899999996444 5555555431 37899999999999999999998875532 111111222 11
Q ss_pred hHHHHHHHhCC--CeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 280 KWDQSKALELG--AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 280 ~~~~~~~l~~~--~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
. ...+.++ +.|.++|- -+.+...=..+.+||||||+.+-
T Consensus 325 I---~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk 365 (738)
T PHA03368 325 I---SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIR 365 (738)
T ss_pred E---EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCC
Confidence 1 0112223 25555531 11222334478999999998763
No 360
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=89.84 E-value=0.87 Score=46.87 Aligned_cols=55 Identities=24% Similarity=0.386 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH--HHHHHHHHHHHhcc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE--LSQQIYNEAKRFGK 265 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~--La~Qi~~~~~~l~~ 265 (330)
..++++++|+||+|||..+. .++...+. .+..++|+=|-.. |...+...++..+.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~-~l~~q~i~-------~g~~viv~DpKgD~~l~~~~~~~~~~~G~ 231 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAE-LLITQDIR-------RGDVVIVIDPKGDADLKRRMRAEAKRAGR 231 (634)
T ss_pred CCCcEEEECCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEeCCCchHHHHHHHHHHHHhCC
Confidence 45789999999999996653 44444444 2566777778754 77777777777654
No 361
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=89.83 E-value=1.3 Score=38.81 Aligned_cols=46 Identities=22% Similarity=0.126 Sum_probs=25.0
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr 250 (330)
.|+=+.+.+++|+|||...+ .++........ ..+...+++++..-.
T Consensus 18 ~g~v~~I~G~~GsGKT~l~~-~ia~~~~~~~~-~~g~~~~v~yi~~e~ 63 (226)
T cd01393 18 TGRITEIFGEFGSGKTQLCL-QLAVEAQLPGE-LGGLEGKVVYIDTEG 63 (226)
T ss_pred CCcEEEEeCCCCCChhHHHH-HHHHHhhcccc-cCCCcceEEEEecCC
Confidence 35667778999999995433 33333322110 011125677776543
No 362
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=89.73 E-value=0.34 Score=49.96 Aligned_cols=48 Identities=21% Similarity=0.150 Sum_probs=35.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
.++++.|+||||||..+++|.|... +..+||+=|--|+...+....++
T Consensus 145 ~hvLviApTrSGKgvg~VIPnLL~~----------~~S~VV~D~KGEl~~~Ta~~R~~ 192 (663)
T PRK13876 145 EHVLCFAPTRSGKGVGLVVPTLLTW----------PGSAIVHDIKGENWQLTAGFRAR 192 (663)
T ss_pred ceEEEEecCCCCcceeEehhhHHhC----------CCCEEEEeCcchHHHHHHHHHHh
Confidence 5889999999999999999987652 23566666777776655554444
No 363
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=89.72 E-value=0.53 Score=48.66 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=35.4
Q ss_pred HHHHHHHHHCCCCCCCHHHHHhhhhh--cCCCcEEEEcCCCChhHHHHHHHHHHHHHhc
Q psy17644 176 EVLMKALRKCEYTSPTPIQAQAVPAA--LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQ 232 (330)
Q Consensus 176 ~~l~~~l~~~~~~~pt~iQ~~~i~~~--~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~ 232 (330)
..|.+.+++.+-. +++.-.-+|.. ...++++++|.||||||. .+..+|..+.++
T Consensus 157 ~~l~k~lk~~~~~--s~i~I~gvPip~~~E~~H~li~GttGSGKS~-~i~~LL~~ir~R 212 (732)
T PRK13700 157 KDVARMLKKDGKD--SDIRIGDLPIIRDSEIQNFCLHGTVGAGKSE-VIRRLANYARQR 212 (732)
T ss_pred HHHHHHHHhcCCC--CCeeEccccCCcchhhcceEEeCCCCCCHHH-HHHHHHHHHHHc
Confidence 4566666665543 34444445543 466899999999999996 345666666654
No 364
>KOG2004|consensus
Probab=89.71 E-value=1.9 Score=44.48 Aligned_cols=82 Identities=26% Similarity=0.330 Sum_probs=52.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD 282 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 282 (330)
+|+=+++.+|+|-|||.. +..|.+.+.+ --+.+..||.+...
T Consensus 437 qGkIlCf~GPPGVGKTSI--------------------------------~kSIA~ALnR------kFfRfSvGG~tDvA 478 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKTSI--------------------------------AKSIARALNR------KFFRFSVGGMTDVA 478 (906)
T ss_pred CCcEEEEeCCCCCCcccH--------------------------------HHHHHHHhCC------ceEEEeccccccHH
Confidence 677788889999999932 2222222211 12345678877655
Q ss_pred HHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 283 QSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 283 ~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.++.-++ --|=+-||++.+.+++-... --++.|||+|.+.
T Consensus 479 eIkGHRR--TYVGAMPGkiIq~LK~v~t~---NPliLiDEvDKlG 518 (906)
T KOG2004|consen 479 EIKGHRR--TYVGAMPGKIIQCLKKVKTE---NPLILIDEVDKLG 518 (906)
T ss_pred hhcccce--eeeccCChHHHHHHHhhCCC---CceEEeehhhhhC
Confidence 5444333 24557899999999864442 2368899999886
No 365
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=89.69 E-value=1.5 Score=45.83 Aligned_cols=15 Identities=20% Similarity=0.375 Sum_probs=12.7
Q ss_pred CCccEEEeecccccC
Q psy17644 313 NRVTFLVLDEADRMF 327 (330)
Q Consensus 313 ~~i~~lVvDEad~ll 327 (330)
.+.+++||||+|+|-
T Consensus 118 gr~KVIIIDEah~LT 132 (830)
T PRK07003 118 ARFKVYMIDEVHMLT 132 (830)
T ss_pred CCceEEEEeChhhCC
Confidence 457899999999885
No 366
>KOG1806|consensus
Probab=89.58 E-value=0.7 Score=49.02 Aligned_cols=72 Identities=18% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.+-..||-|-.+|-..+.-..+.+.+|+|+|||...+- ++..+..+ ..+++++|++.+.....|.++.+.++
T Consensus 735 n~v~ft~~qveai~sg~qpgltmvvgppgtgktd~avq-il~~lyhn-----~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 735 NQVKFTPTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQ-ILSVLYHN-----SPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred chhccCHHHHHHHHhcCCCCceeeecCCCCCCcchhhh-hhhhhhhc-----CCCcceEEEEecccchhHHHHHHHhc
Confidence 45567899999999999889999999999999954332 22222222 25789999999999999998887765
No 367
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=89.54 E-value=6 Score=40.83 Aligned_cols=80 Identities=18% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCeEEEEcccHH--------HHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHH
Q psy17644 239 DGPMGLILAPTRE--------LSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVK 306 (330)
Q Consensus 239 ~~~~vLil~Ptr~--------La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~ 306 (330)
++.+++|+||+.+ -+.++++.+.... .+..+..++|+....+.... ++. ..+|||||. ++.
T Consensus 447 ~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~--~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie 519 (630)
T TIGR00643 447 KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF--PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATT-----VIE 519 (630)
T ss_pred hCCcEEEEEccccccccchHHHHHHHHHHHHhhC--CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----eee
Confidence 4678999999763 3455666665543 35678889998876554333 333 479999994 222
Q ss_pred cCCCCCCCccEEEeeccccc
Q psy17644 307 MGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 307 ~~~~~l~~i~~lVvDEad~l 326 (330)
...++.++.++|+..+++.
T Consensus 520 -~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 520 -VGVDVPNATVMVIEDAERF 538 (630)
T ss_pred -cCcccCCCcEEEEeCCCcC
Confidence 3567888999998888763
No 368
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=89.53 E-value=0.93 Score=39.97 Aligned_cols=53 Identities=26% Similarity=0.416 Sum_probs=33.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.-+++.+++|+|||. |++.++...++ ++-++++++- .+...++.+.+..++
T Consensus 15 ~g~~~li~G~~G~GKt~-~~~~~~~~~~~-------~g~~~~y~s~-e~~~~~l~~~~~~~~ 67 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTT-FSLQFLYQGLK-------NGEKAMYISL-EEREERILGYAKSKG 67 (224)
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHHh-------CCCeEEEEEC-CCCHHHHHHHHHHcC
Confidence 35677888999999994 44444444333 3556666644 455677777777664
No 369
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=89.52 E-value=7.5 Score=32.04 Aligned_cols=14 Identities=29% Similarity=0.254 Sum_probs=11.2
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
+.++++.|+|||..
T Consensus 2 i~~~G~~GsGKTt~ 15 (148)
T cd03114 2 IGITGVPGAGKSTL 15 (148)
T ss_pred EEEECCCCCcHHHH
Confidence 46779999999943
No 370
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=89.48 E-value=0.55 Score=46.79 Aligned_cols=38 Identities=24% Similarity=0.376 Sum_probs=22.9
Q ss_pred CHHHHHhhhhhcCC-Cc-EEEEcCCCChhHHHHHHHHHHHH
Q psy17644 191 TPIQAQAVPAALSG-RD-IIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 191 t~iQ~~~i~~~~~g-~d-~i~~a~TGsGKT~a~llp~l~~i 229 (330)
++-|.+.+..++.. +. ++++|+||||||.. +-.++.++
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTt-L~a~L~~l 266 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTT-LYAALSRL 266 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH-HHHHHhcc
Confidence 35555555555533 33 56789999999933 33345554
No 371
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.47 E-value=0.78 Score=45.69 Aligned_cols=54 Identities=22% Similarity=0.311 Sum_probs=39.0
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
.|.-+++.+++|+|||. +++.++....+ ++-+++|++ +-+-..|+...+..++-
T Consensus 262 ~gs~~li~G~~G~GKt~-l~~~f~~~~~~-------~ge~~~y~s-~eEs~~~i~~~~~~lg~ 315 (484)
T TIGR02655 262 KDSIILATGATGTGKTL-LVSKFLENACA-------NKERAILFA-YEESRAQLLRNAYSWGI 315 (484)
T ss_pred CCcEEEEECCCCCCHHH-HHHHHHHHHHH-------CCCeEEEEE-eeCCHHHHHHHHHHcCC
Confidence 45678888999999994 44444444443 466778876 67888888888888753
No 372
>COG0210 UvrD Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]
Probab=89.42 E-value=1.2 Score=46.13 Aligned_cols=71 Identities=18% Similarity=0.183 Sum_probs=51.9
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
.+++-|++++... .-.+++.|..|||||.+-.- -+.|++..... ....+|.|+=|+-.|.++...+.++..
T Consensus 2 ~Ln~~Q~~av~~~--~gp~lV~AGaGsGKT~vlt~-Ria~li~~~~v---~p~~Il~vTFTnkAA~em~~Rl~~~~~ 72 (655)
T COG0210 2 KLNPEQREAVLHP--DGPLLVLAGAGSGKTRVLTE-RIAYLIAAGGV---DPEQILAITFTNKAAAEMRERLLKLLG 72 (655)
T ss_pred CCCHHHHHHHhcC--CCCeEEEECCCCCchhhHHH-HHHHHHHcCCc---ChHHeeeeechHHHHHHHHHHHHHHhC
Confidence 4788999998777 56788889999999955433 33444443221 233588888899999999999888865
No 373
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=89.40 E-value=0.42 Score=44.21 Aligned_cols=15 Identities=27% Similarity=0.355 Sum_probs=13.3
Q ss_pred CcEEEEcCCCChhHH
Q psy17644 205 RDIIGVAKTGSGKTG 219 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~ 219 (330)
+.+++.||+|+|||.
T Consensus 31 ~~~ll~Gp~G~GKT~ 45 (305)
T TIGR00635 31 DHLLLYGPPGLGKTT 45 (305)
T ss_pred CeEEEECCCCCCHHH
Confidence 568999999999993
No 374
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=89.39 E-value=1.4 Score=45.15 Aligned_cols=55 Identities=25% Similarity=0.367 Sum_probs=40.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH--HHHHHHHHHHHHhcc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR--ELSQQIYNEAKRFGK 265 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr--~La~Qi~~~~~~l~~ 265 (330)
...+++++|+||+|||..+.+-+.+.+ + .+..++|+=|-. ++...++..+++.++
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i-~-------~g~~vi~fDpkgD~el~~~~~~~~~~~GR 235 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDI-R-------RGDVVIVFDPKGDADLLKRMYAEAKRAGR 235 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHH-H-------cCCeEEEEeCCCCHHHHHHHHHHHHHhCC
Confidence 356899999999999976655444433 3 366788888875 577788888887765
No 375
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=89.34 E-value=0.29 Score=50.42 Aligned_cols=46 Identities=24% Similarity=0.194 Sum_probs=34.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
++++++|+||||||..+++|.|.. .+..+||+=|-.++...+....
T Consensus 176 ~HvlviapTgSGKgvg~ViPnLL~----------~~~S~VV~D~KGE~~~~Tag~R 221 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGLVVPTLLS----------WGHSSVITDLKGELWALTAGWR 221 (636)
T ss_pred ceEEEEecCCCCCceEEEccchhh----------CCCCEEEEeCcHHHHHHHHHHH
Confidence 679999999999999999998754 1345777778888765544443
No 376
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=89.34 E-value=1.7 Score=41.69 Aligned_cols=27 Identities=15% Similarity=0.212 Sum_probs=19.3
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcC
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQK 233 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~ 233 (330)
-+++.||.|+||+. +...+...++.+.
T Consensus 43 A~Lf~Gp~G~GK~~-lA~~~A~~Llc~~ 69 (365)
T PRK07471 43 AWLIGGPQGIGKAT-LAYRMARFLLATP 69 (365)
T ss_pred eEEEECCCCCCHHH-HHHHHHHHHhCCC
Confidence 57899999999983 3344556676653
No 377
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.30 E-value=0.97 Score=42.90 Aligned_cols=39 Identities=26% Similarity=0.216 Sum_probs=27.3
Q ss_pred HHHHHHCCCCCCCHHHHHhhhhhc-CCCcEEEEcCCCChhHH
Q psy17644 179 MKALRKCEYTSPTPIQAQAVPAAL-SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 179 ~~~l~~~~~~~pt~iQ~~~i~~~~-~g~d~i~~a~TGsGKT~ 219 (330)
+..+.+.|+ +++.+...+..+. .+++++++++||||||.
T Consensus 154 l~~l~~~g~--~~~~~~~~L~~~v~~~~~ili~G~tGsGKTT 193 (340)
T TIGR03819 154 LDELVASGT--FPPGVARLLRAIVAARLAFLISGGTGSGKTT 193 (340)
T ss_pred HHHHHHcCC--CCHHHHHHHHHHHhCCCeEEEECCCCCCHHH
Confidence 444455554 4466666666555 56799999999999993
No 378
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.28 E-value=1.3 Score=44.25 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=15.8
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
++++||.|+|||.+.. .+..++.
T Consensus 39 ~Lf~GppGtGKTTlA~-~lA~~l~ 61 (504)
T PRK14963 39 YLFSGPRGVGKTTTAR-LIAMAVN 61 (504)
T ss_pred EEEECCCCCCHHHHHH-HHHHHHh
Confidence 5899999999995533 3344444
No 379
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=89.25 E-value=4.8 Score=42.80 Aligned_cols=73 Identities=16% Similarity=0.174 Sum_probs=54.6
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC----CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL----GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~----~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
...+||.+|++.-+.++++.+..... .++.+..++|+.+...+...+.. ...|||||. +.. ..+.+..|
T Consensus 212 ~g~iLVFlpg~~ei~~l~~~L~~~~~-~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATn-----IAE-rsLtIp~V 284 (812)
T PRK11664 212 SGSLLLFLPGVGEIQRVQEQLASRVA-SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATN-----IAE-TSLTIEGI 284 (812)
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHhcc-CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecc-----hHH-hcccccCc
Confidence 46789999999999999999886321 25778889999998777766653 258999995 333 35567778
Q ss_pred cEEE
Q psy17644 316 TFLV 319 (330)
Q Consensus 316 ~~lV 319 (330)
.+||
T Consensus 285 ~~VI 288 (812)
T PRK11664 285 RLVV 288 (812)
T ss_pred eEEE
Confidence 7666
No 380
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=89.23 E-value=0.49 Score=43.07 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=19.9
Q ss_pred HhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 196 QAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 196 ~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
+++..+..|+++++.|++|+|||..
T Consensus 13 ~~l~~l~~g~~vLL~G~~GtGKT~l 37 (262)
T TIGR02640 13 RALRYLKSGYPVHLRGPAGTGKTTL 37 (262)
T ss_pred HHHHHHhcCCeEEEEcCCCCCHHHH
Confidence 3444556899999999999999944
No 381
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=89.22 E-value=2.1 Score=42.29 Aligned_cols=53 Identities=25% Similarity=0.276 Sum_probs=34.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.=+++.+++|+|||. +++.++..+.. ++.++||+.. .+...|+...+.+++
T Consensus 93 ~GsvilI~G~pGsGKTT-L~lq~a~~~a~-------~g~kvlYvs~-EEs~~qi~~ra~rlg 145 (454)
T TIGR00416 93 PGSLILIGGDPGIGKST-LLLQVACQLAK-------NQMKVLYVSG-EESLQQIKMRAIRLG 145 (454)
T ss_pred CCeEEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCcEEEEEC-cCCHHHHHHHHHHcC
Confidence 45667788999999994 44444444433 3457888865 355677777666664
No 382
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.16 E-value=1 Score=46.19 Aligned_cols=16 Identities=19% Similarity=0.341 Sum_probs=13.1
Q ss_pred CCCccEEEeecccccC
Q psy17644 312 LNRVTFLVLDEADRMF 327 (330)
Q Consensus 312 l~~i~~lVvDEad~ll 327 (330)
..+.+++||||+|+|-
T Consensus 122 ~gr~KViIIDEah~Ls 137 (700)
T PRK12323 122 AGRFKVYMIDEVHMLT 137 (700)
T ss_pred cCCceEEEEEChHhcC
Confidence 3467899999999985
No 383
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=89.14 E-value=0.37 Score=44.89 Aligned_cols=27 Identities=41% Similarity=0.460 Sum_probs=19.3
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
++.-|+++++|||||||+... .|..++
T Consensus 95 L~KSNILLiGPTGsGKTlLAq--TLAk~L 121 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ--TLAKIL 121 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH--HHHHHh
Confidence 455689999999999995433 444444
No 384
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=89.11 E-value=1 Score=52.22 Aligned_cols=64 Identities=23% Similarity=0.215 Sum_probs=45.0
Q ss_pred CCCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHH--HHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAF--IWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~--llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
..+++.|+.++..++.+ +-+++.+..|+|||... ++-.+..++.. .+.+++.++||..-+.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~------~g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES------EQLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh------cCCeEEEEeChHHHHHHHH
Confidence 46899999999998865 45666799999999443 11222222321 4678999999987776653
No 385
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=89.06 E-value=1.4 Score=46.65 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|..+++.+|+|+|||..
T Consensus 346 ~~~~lll~GppG~GKT~l 363 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSL 363 (775)
T ss_pred CCceEEEECCCCCCHHHH
Confidence 456789999999999943
No 386
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=88.98 E-value=0.73 Score=40.73 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=19.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
++++.+.|.||||||.+ +--++..++
T Consensus 23 ~~H~~I~G~TGsGKS~~-~~~ll~~l~ 48 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNT-VKVLLEELL 48 (229)
T ss_pred cceEEEECCCCCCHHHH-HHHHHHHHH
Confidence 48899999999999943 333555555
No 387
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=88.98 E-value=2.8 Score=37.38 Aligned_cols=57 Identities=16% Similarity=0.142 Sum_probs=28.9
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCC-----CCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELE-----PGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~-----~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
.++.|+.|+|||...+ .+..++..-++.- ...+.+|||+.-- .-..++.+.+..++.
T Consensus 4 ~ll~g~~G~GKS~lal-~la~~va~G~~~~g~~~~~~~~~~Vlyi~~E-d~~~~i~~Rl~~i~~ 65 (239)
T cd01125 4 SALVAPGGTGKSSLLL-VLALAMALGKNLFGGGLKVTEPGRVVYLSAE-DPREEIHRRLEAILQ 65 (239)
T ss_pred eEEEcCCCCCHHHHHH-HHHHHHhcCccccCCccccCCCceEEEEECC-CCHHHHHHHHHHHHh
Confidence 5788999999994433 3333333222111 1245678888722 222334444444433
No 388
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=88.90 E-value=1.4 Score=41.35 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
.+.+++.||+|+|||..
T Consensus 51 ~~~~ll~GppG~GKT~l 67 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTL 67 (328)
T ss_pred CCcEEEECCCCccHHHH
Confidence 35789999999999943
No 389
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.89 E-value=4.4 Score=40.14 Aligned_cols=73 Identities=18% Similarity=0.232 Sum_probs=52.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH----hCCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL----ELGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l----~~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+..+||.|+|+..|..++..++.. ++.+..++|+.+.......+ ....+|||||-. +. ..+++..
T Consensus 225 ~~~~~IIF~~s~~~~e~la~~L~~~----g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~-----~~-~GID~p~ 294 (470)
T TIGR00614 225 KGKSGIIYCPSRKKSEQVTASLQNL----GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVA-----FG-MGINKPD 294 (470)
T ss_pred CCCceEEEECcHHHHHHHHHHHHhc----CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEech-----hh-ccCCccc
Confidence 4567899999999999999988765 67888889988766543322 235799999942 22 3556677
Q ss_pred ccEEEee
Q psy17644 315 VTFLVLD 321 (330)
Q Consensus 315 i~~lVvD 321 (330)
+++||.-
T Consensus 295 V~~VI~~ 301 (470)
T TIGR00614 295 VRFVIHY 301 (470)
T ss_pred ceEEEEe
Confidence 7777753
No 390
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.87 E-value=2.1 Score=42.97 Aligned_cols=16 Identities=25% Similarity=0.214 Sum_probs=13.0
Q ss_pred cEEEEcCCCChhHHHH
Q psy17644 206 DIIGVAKTGSGKTGAF 221 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~ 221 (330)
-++++|+.|+|||.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 40 AYLFTGTRGVGKTTIS 55 (509)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4689999999999543
No 391
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=88.84 E-value=1.8 Score=44.77 Aligned_cols=18 Identities=22% Similarity=0.182 Sum_probs=14.3
Q ss_pred CcEEEEcCCCChhHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~l 222 (330)
+.+|++|+.|+|||.+..
T Consensus 39 Ha~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 39 HAYLLTGTRGVGKTTIAR 56 (709)
T ss_pred eEEEEECCCCCcHHHHHH
Confidence 357999999999995443
No 392
>PRK08939 primosomal protein DnaI; Reviewed
Probab=88.80 E-value=0.89 Score=42.48 Aligned_cols=46 Identities=13% Similarity=0.273 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
.++.+++.|++|+||| |++.++.+-+.. .|..++++ ....++.++.
T Consensus 155 ~~~gl~L~G~~G~GKT--hLa~Aia~~l~~------~g~~v~~~-~~~~l~~~lk 200 (306)
T PRK08939 155 KVKGLYLYGDFGVGKS--YLLAAIANELAK------KGVSSTLL-HFPEFIRELK 200 (306)
T ss_pred CCCeEEEECCCCCCHH--HHHHHHHHHHHH------cCCCEEEE-EHHHHHHHHH
Confidence 3578999999999999 444444443332 24455444 2224544443
No 393
>PRK13767 ATP-dependent helicase; Provisional
Probab=88.79 E-value=4 Score=43.85 Aligned_cols=75 Identities=13% Similarity=0.115 Sum_probs=50.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccC--CCceEEEEECCCchHHHH---HHHhC-CCeEEEEChHHHHHHHHcCCCCCC
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKG--YNLSVVCCYGGGSKWDQS---KALEL-GAEIVVGTPGRIIDMVKMGATKLN 313 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~--~~~~~~~~~gg~~~~~~~---~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~ 313 (330)
+.++||.|+||..|..++..+++.... .+..+.+.+|+.+..... ..+++ ...|||||.. +. ..+++.
T Consensus 284 ~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~-----Le-~GIDip 357 (876)
T PRK13767 284 HRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTS-----LE-LGIDIG 357 (876)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECCh-----HH-hcCCCC
Confidence 467999999999999999998875432 245677788888765543 23343 3688999852 22 244566
Q ss_pred CccEEEe
Q psy17644 314 RVTFLVL 320 (330)
Q Consensus 314 ~i~~lVv 320 (330)
.+++||.
T Consensus 358 ~Vd~VI~ 364 (876)
T PRK13767 358 YIDLVVL 364 (876)
T ss_pred CCcEEEE
Confidence 6666664
No 394
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.74 E-value=0.64 Score=47.77 Aligned_cols=16 Identities=25% Similarity=0.225 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHHHH
Q psy17644 206 DIIGVAKTGSGKTGAF 221 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~ 221 (330)
-+|++|+.|+|||.+.
T Consensus 39 AyLF~GPpGvGKTTlA 54 (702)
T PRK14960 39 AYLFTGTRGVGKTTIA 54 (702)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5689999999999544
No 395
>KOG0991|consensus
Probab=88.72 E-value=0.42 Score=42.73 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.9
Q ss_pred CcEEEEcCCCChhHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~l 222 (330)
-++++.+|+|.|||.+.+
T Consensus 49 P~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSIL 66 (333)
T ss_pred CceEeeCCCCCchhhHHH
Confidence 479999999999996543
No 396
>KOG0744|consensus
Probab=88.72 E-value=2.5 Score=39.65 Aligned_cols=69 Identities=14% Similarity=0.098 Sum_probs=38.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCC-eEEEEcccHH-----------HHHHHHHHHHHhccCCCce
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGP-MGLILAPTRE-----------LSQQIYNEAKRFGKGYNLS 270 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~-~vLil~Ptr~-----------La~Qi~~~~~~l~~~~~~~ 270 (330)
..|=+++.||+|+||| ..|-++.+++.-+ .....+ ..||=..... |+.++++.+..+....+.-
T Consensus 176 ~NRliLlhGPPGTGKT-SLCKaLaQkLSIR---~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~l 251 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKT-SLCKALAQKLSIR---TNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNL 251 (423)
T ss_pred eeeEEEEeCCCCCChh-HHHHHHHHhheee---ecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcE
Confidence 4456778899999999 3444445554321 111122 2344444444 5566666666666665555
Q ss_pred EEEEE
Q psy17644 271 VVCCY 275 (330)
Q Consensus 271 ~~~~~ 275 (330)
++++.
T Consensus 252 VfvLI 256 (423)
T KOG0744|consen 252 VFVLI 256 (423)
T ss_pred EEEEe
Confidence 55443
No 397
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.53 E-value=1.7 Score=44.36 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=13.4
Q ss_pred CcEEEEcCCCChhHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~ 221 (330)
+.+|++|+.|+|||.+.
T Consensus 39 ~a~Lf~Gp~G~GKTtlA 55 (585)
T PRK14950 39 HAYLFTGPRGVGKTSTA 55 (585)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34689999999999443
No 398
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=0.98 Score=46.40 Aligned_cols=82 Identities=28% Similarity=0.326 Sum_probs=52.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD 282 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 282 (330)
.|.=+++++|+|.||| .|+..|.+.+.+- -+.+..||.....
T Consensus 349 kGpILcLVGPPGVGKT--------------------------------SLgkSIA~al~Rk------fvR~sLGGvrDEA 390 (782)
T COG0466 349 KGPILCLVGPPGVGKT--------------------------------SLGKSIAKALGRK------FVRISLGGVRDEA 390 (782)
T ss_pred CCcEEEEECCCCCCch--------------------------------hHHHHHHHHhCCC------EEEEecCccccHH
Confidence 4445666699999999 2444444443321 2345678777665
Q ss_pred HHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 283 QSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 283 ~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.++.-++ --|=+-||+++.-+.+.... -=++++||+|.|.
T Consensus 391 EIRGHRR--TYIGamPGrIiQ~mkka~~~---NPv~LLDEIDKm~ 430 (782)
T COG0466 391 EIRGHRR--TYIGAMPGKIIQGMKKAGVK---NPVFLLDEIDKMG 430 (782)
T ss_pred Hhccccc--cccccCChHHHHHHHHhCCc---CCeEEeechhhcc
Confidence 5555444 23456799999988764432 2378999999986
No 399
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=88.52 E-value=0.95 Score=49.90 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=43.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
.+.++++.|..|||||.+-..=++..++... +..-..+|||+-|+.-+..+...+..
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~---~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGG---PLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcC---CCChhHeeeeeccHHHHHHHHHHHHH
Confidence 5779999999999999776666666665531 12456889999999988888777654
No 400
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.50 E-value=8.4 Score=36.31 Aligned_cols=87 Identities=20% Similarity=0.194 Sum_probs=48.1
Q ss_pred CHHHHHhhhhhc----CCC---cEEEEcCCCChhHHHHHHHHHHHHHhcCCCC--------------CCCCCeEEEEccc
Q psy17644 191 TPIQAQAVPAAL----SGR---DIIGVAKTGSGKTGAFIWPMLVHIMDQKELE--------------PGDGPMGLILAPT 249 (330)
Q Consensus 191 t~iQ~~~i~~~~----~g~---d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~--------------~~~~~~vLil~Pt 249 (330)
+|+|...+..+. +|| -.++.|+.|.||+. +...+...++...... .++.|-+.++.|.
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~-lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQ-LIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI 82 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHH-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc
Confidence 466666666554 443 57789999999983 3333445666532111 2345778888883
Q ss_pred --H-HHHHHHHHHHHHh---ccCCCceEEEEECCC
Q psy17644 250 --R-ELSQQIYNEAKRF---GKGYNLSVVCCYGGG 278 (330)
Q Consensus 250 --r-~La~Qi~~~~~~l---~~~~~~~~~~~~gg~ 278 (330)
+ --+.|+.+....+ ....+.+++.+....
T Consensus 83 ~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~ 117 (325)
T PRK06871 83 DNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAE 117 (325)
T ss_pred cCCCCCHHHHHHHHHHHhhccccCCceEEEEechh
Confidence 1 2344444333332 223355666665544
No 401
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=88.45 E-value=1.8 Score=49.49 Aligned_cols=66 Identities=20% Similarity=0.195 Sum_probs=44.9
Q ss_pred CCCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
..+++.|+.++..++.+ +-+++.+..|+|||.. +-.+..++... ....+.+++.++||---|.++.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~--l~~v~~~~~~l--~~~~~~~V~glAPTgrAAk~L~ 1033 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQ--FRAVMSAVNTL--PESERPRVVGLGPTHRAVGEMR 1033 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHH--HHHHHHHHHHh--hcccCceEEEECCcHHHHHHHH
Confidence 46899999999999975 4577779999999943 32332222210 0124578899999987776543
No 402
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=88.40 E-value=3.1 Score=42.85 Aligned_cols=71 Identities=14% Similarity=0.215 Sum_probs=51.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
..++||.|+|+.-|.+++..+... +..+..++|..+..+.... ++. ..+||||| +++.+ .+++.+|
T Consensus 245 ~~~~IVF~~tk~~a~~l~~~L~~~----g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVAT-----dv~ar-GIDip~V 314 (629)
T PRK11634 245 FDAAIIFVRTKNATLEVAEALERN----GYNSAALNGDMNQALREQTLERLKDGRLDILIAT-----DVAAR-GLDVERI 314 (629)
T ss_pred CCCEEEEeccHHHHHHHHHHHHhC----CCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEc-----chHhc-CCCcccC
Confidence 467999999999999999888764 5678888888776554333 333 47999999 33333 4567777
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 315 ~~VI~ 319 (629)
T PRK11634 315 SLVVN 319 (629)
T ss_pred CEEEE
Confidence 77764
No 403
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=88.34 E-value=1.9 Score=41.45 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=14.5
Q ss_pred CcEEEEcCCCChhHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~l 222 (330)
.++|+.+|.|+|||..+-
T Consensus 49 ~SmIl~GPPG~GKTTlA~ 66 (436)
T COG2256 49 HSMILWGPPGTGKTTLAR 66 (436)
T ss_pred ceeEEECCCCCCHHHHHH
Confidence 378999999999995443
No 404
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=88.18 E-value=6.1 Score=37.22 Aligned_cols=58 Identities=17% Similarity=0.104 Sum_probs=35.6
Q ss_pred CHHHHHhhhhhc--CCC---cEEEEcCCCChhHHHHHHHHHHHHHhcCCC---------------CCCCCCeEEEEccc
Q psy17644 191 TPIQAQAVPAAL--SGR---DIIGVAKTGSGKTGAFIWPMLVHIMDQKEL---------------EPGDGPMGLILAPT 249 (330)
Q Consensus 191 t~iQ~~~i~~~~--~g~---d~i~~a~TGsGKT~a~llp~l~~i~~~~~~---------------~~~~~~~vLil~Pt 249 (330)
+|+|...|..+. .+| -+++.|+.|.|||... ..+...++..... ..++.|-..++.|+
T Consensus 3 yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la-~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~ 80 (325)
T PRK08699 3 YPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFA-RFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPL 80 (325)
T ss_pred CCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecc
Confidence 467777776665 233 5889999999998432 2334445543211 01345888889884
No 405
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=88.12 E-value=3.5 Score=40.84 Aligned_cols=71 Identities=8% Similarity=0.135 Sum_probs=48.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
..++||.|+++.-|..++..+.+. +..+..++|+....++... ++. ...|||||- .+. ..+++..+
T Consensus 335 ~~~~IVF~~s~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~-----~l~-~GIDi~~v 404 (475)
T PRK01297 335 WERVMVFANRKDEVRRIEERLVKD----GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATD-----VAG-RGIHIDGI 404 (475)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEcc-----ccc-cCCcccCC
Confidence 468999999999999998888654 5677778888776555333 333 468899983 222 23445556
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
+++|.
T Consensus 405 ~~VI~ 409 (475)
T PRK01297 405 SHVIN 409 (475)
T ss_pred CEEEE
Confidence 65554
No 406
>PRK05642 DNA replication initiation factor; Validated
Probab=88.08 E-value=1.5 Score=39.16 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=25.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQI 256 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi 256 (330)
..++++|++|+|||.. +.++.+.+.. .+.+++++. ..++....
T Consensus 46 ~~l~l~G~~G~GKTHL--l~a~~~~~~~------~~~~v~y~~-~~~~~~~~ 88 (234)
T PRK05642 46 SLIYLWGKDGVGRSHL--LQAACLRFEQ------RGEPAVYLP-LAELLDRG 88 (234)
T ss_pred CeEEEECCCCCCHHHH--HHHHHHHHHh------CCCcEEEee-HHHHHhhh
Confidence 5688999999999933 3333332221 245666654 45665543
No 407
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.03 E-value=0.88 Score=43.19 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=17.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
.+..++++|+||||||. ++-.++.++
T Consensus 121 ~~g~ili~G~tGSGKTT-~l~al~~~i 146 (343)
T TIGR01420 121 PRGLILVTGPTGSGKST-TLASMIDYI 146 (343)
T ss_pred cCcEEEEECCCCCCHHH-HHHHHHHhh
Confidence 35678899999999993 333344444
No 408
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.96 E-value=1.8 Score=44.56 Aligned_cols=17 Identities=24% Similarity=0.296 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChhHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~ 221 (330)
..+|+.|+.|+|||.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA 55 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSA 55 (620)
T ss_pred ceEEEECCCCCChHHHH
Confidence 45789999999999443
No 409
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=87.95 E-value=0.59 Score=47.90 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=35.4
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.++++.|+||||||..+++|.+.. . +.-+||+=|..|+..-+...-++.
T Consensus 212 ~H~lv~ApTgsGKgvg~VIPnLL~---~-------~gS~VV~DpKgE~~~~Ta~~R~~~ 260 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSVVVPTALK---Y-------GGPLVCLDPSTEVAPMVCEHRRQA 260 (623)
T ss_pred ceEEEEeCCCCCccceeehhhhhc---C-------CCCEEEEEChHHHHHHHHHHHHHc
Confidence 689999999999999999997543 1 234677777777766555544444
No 410
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=87.92 E-value=2.4 Score=43.03 Aligned_cols=105 Identities=16% Similarity=0.167 Sum_probs=67.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC-CCceEEEEECCCchH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG-YNLSVVCCYGGGSKW 281 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~-~~~~~~~~~gg~~~~ 281 (330)
..|-.++..|---||| .|+.|++..+++.- .|-++.|+++-|..+.-++.++..-+.. .+.+.+.-.
T Consensus 201 KQkaTVFLVPRRHGKT-Wf~VpiIsllL~s~-----~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~~vi~~------ 268 (668)
T PHA03372 201 KQKATVFLVPRRHGKT-WFIIPIISFLLKNI-----IGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRKHTIEN------ 268 (668)
T ss_pred hccceEEEecccCCce-ehHHHHHHHHHHhh-----cCceEEEEeeHHHHHHHHHHHHHHHHhhhcCccceeee------
Confidence 4567888889999999 68889998888742 5889999999999988888876543321 121111110
Q ss_pred HHHHHHhCCCeEEEEChHHH-----HHHHHcCCCCCCCccEEEeeccccc
Q psy17644 282 DQSKALELGAEIVVGTPGRI-----IDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 282 ~~~~~l~~~~dIiV~TP~~L-----~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
++--|.+.-|+.= ....+.+.+.=....+|+|||||-+
T Consensus 269 -------k~~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI 311 (668)
T PHA03372 269 -------KDNVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFI 311 (668)
T ss_pred -------cCcEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhcc
Confidence 1224444444321 1112334445567899999999965
No 411
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=87.89 E-value=3.3 Score=39.10 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=62.5
Q ss_pred CCHHHHHhhhhhcCC----CcEEEEcCCCChhHHHHHHHHHHHHHhcCCC--------------CCCCCCeEEEEcccH-
Q psy17644 190 PTPIQAQAVPAALSG----RDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL--------------EPGDGPMGLILAPTR- 250 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g----~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~--------------~~~~~~~vLil~Ptr- 250 (330)
.+|+|...|..++.. +-+++.|+.|.|||. +...+...++..... ..++.|-+.++.|..
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~-~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~ 82 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRA-LAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA 82 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHH-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC
Confidence 468888888887733 258889999999993 333344556553211 123457888888842
Q ss_pred ---HHHHHHHHHHHHhcc---CCCceEEEEECCCc--hHHH---HHHHhC---CCeEEEEC--hHHHHHHHH
Q psy17644 251 ---ELSQQIYNEAKRFGK---GYNLSVVCCYGGGS--KWDQ---SKALEL---GAEIVVGT--PGRIIDMVK 306 (330)
Q Consensus 251 ---~La~Qi~~~~~~l~~---~~~~~~~~~~gg~~--~~~~---~~~l~~---~~dIiV~T--P~~L~~~l~ 306 (330)
--+.|+.+....+.. ..+.+++.+..... ...+ .+.+.. ++-+|++| |.+|..-+.
T Consensus 83 ~~~i~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~ 154 (328)
T PRK05707 83 DKTIKVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIK 154 (328)
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHH
Confidence 234555544333322 23455665543222 2111 223333 44555555 556655443
No 412
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.79 E-value=1.1 Score=45.56 Aligned_cols=26 Identities=23% Similarity=0.045 Sum_probs=17.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
+-+|+.||.|+|||.... .+...+.+
T Consensus 39 hA~Lf~GP~GvGKTTlA~-~lAk~L~C 64 (605)
T PRK05896 39 HAYIFSGPRGIGKTSIAK-IFAKAINC 64 (605)
T ss_pred ceEEEECCCCCCHHHHHH-HHHHHhcC
Confidence 457899999999994433 23344443
No 413
>PF14516 AAA_35: AAA-like domain
Probab=87.64 E-value=1.9 Score=40.67 Aligned_cols=115 Identities=16% Similarity=0.203 Sum_probs=62.0
Q ss_pred HHHHHhhhhhcC-CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH------HHHHHHHHH-HHHh
Q psy17644 192 PIQAQAVPAALS-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR------ELSQQIYNE-AKRF 263 (330)
Q Consensus 192 ~iQ~~~i~~~~~-g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr------~La~Qi~~~-~~~l 263 (330)
|+...++..+.+ |+-+.+.||-.+||| +.+.-+++++.+ .+-++++|-=.. .-..+.... +..+
T Consensus 18 ~~e~~~~~~i~~~G~~~~I~apRq~GKT-Sll~~l~~~l~~-------~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i 89 (331)
T PF14516_consen 18 PAEQECYQEIVQPGSYIRIKAPRQMGKT-SLLLRLLERLQQ-------QGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEI 89 (331)
T ss_pred HHHHHHHHHHhcCCCEEEEECcccCCHH-HHHHHHHHHHHH-------CCCEEEEEEeecCCCcccCCHHHHHHHHHHHH
Confidence 588999989887 999999999999999 334444555443 245555443211 112223333 2233
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC-CCCCccEEEeecccccCc
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT-KLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-~l~~i~~lVvDEad~lld 328 (330)
++.+++.. ....... -.++.+.++..+++.... ....==+|+|||+|++++
T Consensus 90 ~~~L~l~~-------~l~~~w~-------~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~ 141 (331)
T PF14516_consen 90 SRQLKLDE-------KLDEYWD-------EEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFE 141 (331)
T ss_pred HHHcCCCh-------hHHHHHH-------HhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhcc
Confidence 33333321 1111111 124455565555543211 122334899999999985
No 414
>KOG1016|consensus
Probab=87.63 E-value=4.5 Score=42.17 Aligned_cols=92 Identities=23% Similarity=0.226 Sum_probs=54.2
Q ss_pred CCCcEEEEcCCCChhHH---HHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC---------Cce
Q psy17644 203 SGRDIIGVAKTGSGKTG---AFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY---------NLS 270 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~---a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~---------~~~ 270 (330)
+|-.+|+.-..|-|||+ .|+=.+|.|- ...+||+|+|-..| +.|+.++..|...+ .+.
T Consensus 281 sGFGCILAHSMGLGKTlQVisF~diflRhT---------~AKtVL~ivPiNTl-QNWlsEfnmWiP~y~sD~~vrpR~F~ 350 (1387)
T KOG1016|consen 281 SGFGCILAHSMGLGKTLQVISFSDIFLRHT---------KAKTVLVIVPINTL-QNWLSEFNMWIPKYFSDTGVRPRSFE 350 (1387)
T ss_pred CCcceeeeeccccCceeEEeehhHHHhhcC---------ccceEEEEEehHHH-HHHHHHhhhhcCCCcccCCCccceeE
Confidence 34456777778999994 3554444441 35689999998776 66777777775432 244
Q ss_pred EEEEECCCchHHHHHH-HhC---CCeEEEEChHHHHHH
Q psy17644 271 VVCCYGGGSKWDQSKA-LEL---GAEIVVGTPGRIIDM 304 (330)
Q Consensus 271 ~~~~~gg~~~~~~~~~-l~~---~~dIiV~TP~~L~~~ 304 (330)
+.++..|.....++.. +.. ...|++.-.+.+.-+
T Consensus 351 vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL 388 (1387)
T KOG1016|consen 351 VFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLL 388 (1387)
T ss_pred EEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHH
Confidence 5555555544443322 221 235666556555443
No 415
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=87.63 E-value=1.6 Score=40.59 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=11.0
Q ss_pred cEEE-EcCCCChhHH
Q psy17644 206 DIIG-VAKTGSGKTG 219 (330)
Q Consensus 206 d~i~-~a~TGsGKT~ 219 (330)
++++ .|++|+|||.
T Consensus 44 ~~lll~G~~G~GKT~ 58 (316)
T PHA02544 44 NMLLHSPSPGTGKTT 58 (316)
T ss_pred eEEEeeCcCCCCHHH
Confidence 4455 7999999994
No 416
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=87.53 E-value=5.4 Score=31.04 Aligned_cols=76 Identities=18% Similarity=0.290 Sum_probs=50.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---HHHhCC-CeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS---KALELG-AEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~l~~~-~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.++++..+.++...+++. +..+..+.|+....... ..+..+ ..|+|+|... ....++..
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~------~~G~d~~~ 96 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP----GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI------ARGIDLPN 96 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc----CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh------hcCcChhh
Confidence 3578899999999999999888872 56677888877644332 223333 5788988521 12445666
Q ss_pred ccEEEeeccc
Q psy17644 315 VTFLVLDEAD 324 (330)
Q Consensus 315 i~~lVvDEad 324 (330)
+..+|+....
T Consensus 97 ~~~vi~~~~~ 106 (131)
T cd00079 97 VSVVINYDLP 106 (131)
T ss_pred CCEEEEeCCC
Confidence 7777665543
No 417
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=87.53 E-value=6.6 Score=36.72 Aligned_cols=59 Identities=17% Similarity=0.127 Sum_probs=30.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH-HHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE-LSQQIYNEAKRF 263 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~-La~Qi~~~~~~l 263 (330)
.|.=+.+++++|+|||. +++.++........ ....+.+++||.--.. -..++.+.+..+
T Consensus 101 ~g~vtei~G~~GsGKT~-l~~~~~~~~~~~~~-~gg~~~~~~yi~te~~f~~~rl~~~~~~~ 160 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQ-ICHQLAVNVQLPEE-KGGLEGKAVYIDTEGTFRPERIEQMAEAL 160 (317)
T ss_pred CCcEEEEECCCCCCHhH-HHHHHHHHhccccc-cCCCCceEEEEeCCCCcCHHHHHHHHHHc
Confidence 35667788999999994 44433333222111 1112347777764321 244444444443
No 418
>PHA02542 41 41 helicase; Provisional
Probab=87.49 E-value=2.4 Score=42.14 Aligned_cols=34 Identities=15% Similarity=0.127 Sum_probs=21.6
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
=+++.|++|.||| +|++-+..++.. .|..|+|+.
T Consensus 192 LiiIaarPgmGKT-tfalniA~~~a~-------~g~~Vl~fS 225 (473)
T PHA02542 192 LNVLLAGVNVGKS-LGLCSLAADYLQ-------QGYNVLYIS 225 (473)
T ss_pred EEEEEcCCCccHH-HHHHHHHHHHHh-------cCCcEEEEe
Confidence 3556699999999 455555555543 245566664
No 419
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=87.49 E-value=4.5 Score=41.13 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~l 222 (330)
+-+|++||.|+|||.+.-
T Consensus 39 hayLf~Gp~GtGKTt~Ak 56 (559)
T PRK05563 39 HAYLFSGPRGTGKTSAAK 56 (559)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999995443
No 420
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=87.44 E-value=1 Score=39.46 Aligned_cols=36 Identities=19% Similarity=0.206 Sum_probs=23.6
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
.|+=+++.+++|+||| .+++.++..+.. .+.+++++
T Consensus 18 ~g~i~~i~G~~GsGKT-~l~~~~a~~~~~-------~g~~v~yi 53 (218)
T cd01394 18 RGTVTQVYGPPGTGKT-NIAIQLAVETAG-------QGKKVAYI 53 (218)
T ss_pred CCeEEEEECCCCCCHH-HHHHHHHHHHHh-------cCCeEEEE
Confidence 3456778899999999 444445544433 35566776
No 421
>KOG1533|consensus
Probab=87.34 E-value=0.56 Score=41.89 Aligned_cols=24 Identities=21% Similarity=0.310 Sum_probs=18.8
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
.++++|+||||| +|+.-+.+.+..
T Consensus 5 qvVIGPPgSGKs-TYc~g~~~fls~ 28 (290)
T KOG1533|consen 5 QVVIGPPGSGKS-TYCNGMSQFLSA 28 (290)
T ss_pred eEEEcCCCCCcc-chhhhHHHHHHH
Confidence 478899999999 688777666554
No 422
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=87.33 E-value=1.5 Score=41.32 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=20.6
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
.|+=+.+.+++|+||| .++++++....+
T Consensus 54 ~G~iteI~G~~GsGKT-tLaL~~~~~~~~ 81 (321)
T TIGR02012 54 RGRIIEIYGPESSGKT-TLALHAIAEAQK 81 (321)
T ss_pred CCeEEEEECCCCCCHH-HHHHHHHHHHHH
Confidence 4567888899999999 455666665544
No 423
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=87.30 E-value=0.86 Score=45.01 Aligned_cols=40 Identities=28% Similarity=0.383 Sum_probs=26.2
Q ss_pred CHHHHHhhhhhcCCC-c-EEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 191 TPIQAQAVPAALSGR-D-IIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~-d-~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
++.|...+-.+++.. - +++.||||||||. .+..+|+.+..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTT-TLY~~L~~ln~ 284 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTT-TLYAALSELNT 284 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHH-HHHHHHHHhcC
Confidence 567777777666443 3 4455999999993 44456666544
No 424
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=87.22 E-value=12 Score=38.98 Aligned_cols=80 Identities=19% Similarity=0.311 Sum_probs=53.5
Q ss_pred CCCeEEEEcccHH--------HHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHH
Q psy17644 239 DGPMGLILAPTRE--------LSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVK 306 (330)
Q Consensus 239 ~~~~vLil~Ptr~--------La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~ 306 (330)
++.+++|+||+.+ -+..+++.+.+... +..+..++|+....+.... ++. ..+|||||. .+.
T Consensus 470 ~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~--~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~-----vie 542 (681)
T PRK10917 470 KGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFP--ELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATT-----VIE 542 (681)
T ss_pred cCCcEEEEEcccccccchhHHHHHHHHHHHHHHCC--CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECc-----cee
Confidence 4678999999643 34555666655432 3678889998776554333 333 369999993 332
Q ss_pred cCCCCCCCccEEEeeccccc
Q psy17644 307 MGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 307 ~~~~~l~~i~~lVvDEad~l 326 (330)
...++.++.++|+..+++.
T Consensus 543 -~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 543 -VGVDVPNATVMVIENAERF 561 (681)
T ss_pred -eCcccCCCcEEEEeCCCCC
Confidence 3567788899998888763
No 425
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=87.20 E-value=3.7 Score=42.55 Aligned_cols=77 Identities=16% Similarity=0.312 Sum_probs=54.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---HHHhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS---KALEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
++.++||+|+|+..|..+.+.+... ++.+..++|+....... ..++. ..+|+||| ..+. ..+.+..
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~----gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t-----~~L~-rGfDiP~ 510 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL----GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDLPE 510 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh----ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEc-----Chhc-CCeeeCC
Confidence 5789999999999999999888775 56777787876654332 23333 47899988 3333 4556788
Q ss_pred ccEEEeecccc
Q psy17644 315 VTFLVLDEADR 325 (330)
Q Consensus 315 i~~lVvDEad~ 325 (330)
+.++|+=+++.
T Consensus 511 v~lVvi~Dadi 521 (655)
T TIGR00631 511 VSLVAILDADK 521 (655)
T ss_pred CcEEEEeCccc
Confidence 88887766654
No 426
>PRK07773 replicative DNA helicase; Validated
Probab=87.14 E-value=1.6 Score=46.78 Aligned_cols=113 Identities=19% Similarity=0.076 Sum_probs=55.3
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ 283 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~ 283 (330)
|.=+++.|++|+||| +|++.++.++..+ .+..++|++ .-.-..|+...+........... ...|..+...+
T Consensus 217 G~livIagrPg~GKT-~fal~ia~~~a~~------~~~~V~~fS-lEms~~ql~~R~~s~~~~i~~~~-i~~g~l~~~~~ 287 (886)
T PRK07773 217 GQLIIVAARPSMGKT-TFGLDFARNCAIR------HRLAVAIFS-LEMSKEQLVMRLLSAEAKIKLSD-MRSGRMSDDDW 287 (886)
T ss_pred CcEEEEEeCCCCCcH-HHHHHHHHHHHHh------cCCeEEEEe-cCCCHHHHHHHHHHHhcCCCHHH-HhcCCCCHHHH
Confidence 334666799999999 5666666665432 234556654 33444555555543322211111 11122222221
Q ss_pred ------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 284 ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 284 ------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
...+. ...|.|. |+..+...+.+-.. -..+++||||=.+.|-
T Consensus 288 ~~~~~a~~~l~-~~~i~i~d~~~~~i~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 340 (886)
T PRK07773 288 TRLARAMGEIS-EAPIFIDDTPNLTVMEIRAKARRLRQ-EANLGLIVVDYLQLMT 340 (886)
T ss_pred HHHHHHHHHHh-cCCEEEECCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchhhcC
Confidence 11222 2345552 44555443322111 1358899999988764
No 427
>PRK06749 replicative DNA helicase; Provisional
Probab=87.07 E-value=3.7 Score=40.27 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=23.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
.|.=+++.|++|.||| +|++-+..++.. .+..|+|+.
T Consensus 185 ~G~LiiIaarPgmGKT-afal~ia~~~a~-------~g~~v~~fS 221 (428)
T PRK06749 185 EGDFVVLGARPSMGKT-AFALNVGLHAAK-------SGAAVGLFS 221 (428)
T ss_pred CCcEEEEEeCCCCCch-HHHHHHHHHHHh-------cCCCEEEEE
Confidence 3344555699999999 566666666653 244556664
No 428
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=87.02 E-value=2.4 Score=39.51 Aligned_cols=39 Identities=18% Similarity=0.400 Sum_probs=23.3
Q ss_pred EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q psy17644 208 IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252 (330)
Q Consensus 208 i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L 252 (330)
++-||||+||+- +|..++..+... ...-.|++|+|+...
T Consensus 91 ~VYGPTG~GKSq-----LlRNLis~~lI~-P~PETVfFItP~~~m 129 (369)
T PF02456_consen 91 VVYGPTGSGKSQ-----LLRNLISCQLIQ-PPPETVFFITPQKDM 129 (369)
T ss_pred EEECCCCCCHHH-----HHHHhhhcCccc-CCCCceEEECCCCCC
Confidence 344999999992 334444332211 123468999998654
No 429
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=87.01 E-value=3.4 Score=37.91 Aligned_cols=21 Identities=29% Similarity=0.284 Sum_probs=16.4
Q ss_pred CCCcEEEEcCCCChhHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIW 223 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~ll 223 (330)
.+..+++++++|+|||..+..
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~ 94 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAK 94 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHH
Confidence 456788889999999965553
No 430
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=87.00 E-value=0.93 Score=42.32 Aligned_cols=19 Identities=47% Similarity=0.501 Sum_probs=16.3
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+..++.++++++||||||.
T Consensus 141 v~~~~~ili~G~tGsGKTT 159 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTT 159 (308)
T ss_pred hhCCCEEEEECCCCCCHHH
Confidence 3478899999999999993
No 431
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=86.86 E-value=0.86 Score=46.32 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=23.2
Q ss_pred HHHHHhhhhhcC-C-CcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 192 PIQAQAVPAALS-G-RDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 192 ~iQ~~~i~~~~~-g-~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
+-|.+.+..++. . --++++|+||||||.+ +..++.++
T Consensus 302 ~~~~~~l~~~~~~~~Glilv~G~tGSGKTTt-l~a~l~~~ 340 (564)
T TIGR02538 302 PDQKALFLEAIHKPQGMVLVTGPTGSGKTVS-LYTALNIL 340 (564)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCCHHHH-HHHHHHhh
Confidence 555555555443 2 3467889999999943 34455555
No 432
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=86.79 E-value=1 Score=31.55 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=20.5
Q ss_pred hhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 197 AVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 197 ~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
.++.-..|...++.+++|||||.. +=++..++
T Consensus 16 ~~~~~~~g~~tli~G~nGsGKSTl--lDAi~~~L 47 (62)
T PF13555_consen 16 TIDFDPRGDVTLITGPNGSGKSTL--LDAIQTVL 47 (62)
T ss_pred EEeecCCCcEEEEECCCCCCHHHH--HHHHHHHH
Confidence 333333456789999999999943 33444444
No 433
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=86.75 E-value=0.42 Score=42.13 Aligned_cols=13 Identities=38% Similarity=0.506 Sum_probs=11.1
Q ss_pred EEEEcCCCChhHH
Q psy17644 207 IIGVAKTGSGKTG 219 (330)
Q Consensus 207 ~i~~a~TGsGKT~ 219 (330)
+++.|..|+|||.
T Consensus 1 ~vv~G~pGsGKSt 13 (234)
T PF01443_consen 1 IVVHGVPGSGKST 13 (234)
T ss_pred CEEEcCCCCCHHH
Confidence 4678999999994
No 434
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=86.59 E-value=6.2 Score=39.74 Aligned_cols=92 Identities=22% Similarity=0.273 Sum_probs=62.8
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCC-hhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH-HHHHHHHHHHhccC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGS-GKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL-SQQIYNEAKRFGKG 266 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGs-GKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L-a~Qi~~~~~~l~~~ 266 (330)
.|-+.....+...+.||.+++.+.||| |+.+| .++++ .+|+.|++.-.-|. ..++..+++....
T Consensus 235 ~pV~~d~~~i~~~~~gK~vLVTGagGSiGsel~------~qil~-------~~p~~i~l~~~~E~~~~~i~~el~~~~~- 300 (588)
T COG1086 235 PPVALDTELIGAMLTGKTVLVTGGGGSIGSELC------RQILK-------FNPKEIILFSRDEYKLYLIDMELREKFP- 300 (588)
T ss_pred CCCCCCHHHHHhHcCCCEEEEeCCCCcHHHHHH------HHHHh-------cCCCEEEEecCchHHHHHHHHHHHhhCC-
Confidence 466667778888899999999999999 88844 45554 36777777766555 4556666776544
Q ss_pred CCceEEEEECCCchHHHHHHHhCC--CeEEE
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELG--AEIVV 295 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~--~dIiV 295 (330)
..+.....|...........-.+ +|+|+
T Consensus 301 -~~~~~~~igdVrD~~~~~~~~~~~kvd~Vf 330 (588)
T COG1086 301 -ELKLRFYIGDVRDRDRVERAMEGHKVDIVF 330 (588)
T ss_pred -CcceEEEecccccHHHHHHHHhcCCCceEE
Confidence 45666777776666555554444 66665
No 435
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.55 E-value=3.2 Score=42.31 Aligned_cols=15 Identities=27% Similarity=0.337 Sum_probs=12.5
Q ss_pred EEEEcCCCChhHHHH
Q psy17644 207 IIGVAKTGSGKTGAF 221 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~ 221 (330)
.|++|+.|+|||.+.
T Consensus 41 yLf~Gp~G~GKtt~A 55 (576)
T PRK14965 41 FLFTGARGVGKTSTA 55 (576)
T ss_pred EEEECCCCCCHHHHH
Confidence 588999999999544
No 436
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.42 E-value=3 Score=42.02 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=12.9
Q ss_pred cEEEEcCCCChhHHHH
Q psy17644 206 DIIGVAKTGSGKTGAF 221 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~ 221 (330)
-+|+.|+.|+|||.+.
T Consensus 40 a~Lf~Gp~G~GKTt~A 55 (527)
T PRK14969 40 AYLFTGTRGVGKTTLA 55 (527)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3689999999999543
No 437
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=86.36 E-value=5.7 Score=35.00 Aligned_cols=44 Identities=20% Similarity=0.119 Sum_probs=24.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP 248 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P 248 (330)
.|+=+.+.+++|+|||.. ++.++.+...... ..+.+..++++.-
T Consensus 18 ~g~i~~i~G~~GsGKT~l-~~~l~~~~~~~~~-~~g~~~~viyi~~ 61 (235)
T cd01123 18 TGSITEIFGEFGSGKTQL-CHQLAVTVQLPIE-LGGLEGKAVYIDT 61 (235)
T ss_pred CCeEEEEECCCCCCHHHH-HHHHHHHeeCccc-cCCCCccEEEEeC
Confidence 456678889999999943 3333322222110 0112356777764
No 438
>KOG0741|consensus
Probab=86.34 E-value=3 Score=41.67 Aligned_cols=108 Identities=20% Similarity=0.303 Sum_probs=63.2
Q ss_pred CCCCCCCCCCCCC---CCHHHHHHHHHCC---CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCC
Q psy17644 161 DPPYPVSSFGHFG---FDEVLMKALRKCE---YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKE 234 (330)
Q Consensus 161 ~~p~p~~~f~~~~---l~~~l~~~l~~~~---~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~ 234 (330)
.+..|--.|+++| |+.++...+++.- ...|.-+.+-.+++ -|-+++-+|+|+|||+..- -+-.++..|.
T Consensus 210 ~ii~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~H---VKGiLLyGPPGTGKTLiAR--qIGkMLNAre 284 (744)
T KOG0741|consen 210 SIINPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKH---VKGILLYGPPGTGKTLIAR--QIGKMLNARE 284 (744)
T ss_pred cccCCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccc---eeeEEEECCCCCChhHHHH--HHHHHhcCCC
Confidence 3456667788885 6777766665532 12222233333333 2568888999999996532 2334455565
Q ss_pred CCCCCCCeEE--EEccc----HHHHHHHHHHHHHhccCCCceEEE
Q psy17644 235 LEPGDGPMGL--ILAPT----RELSQQIYNEAKRFGKGYNLSVVC 273 (330)
Q Consensus 235 ~~~~~~~~vL--il~Pt----r~La~Qi~~~~~~l~~~~~~~~~~ 273 (330)
+..-+||.+| ||--+ |.|-....++.+.++...++.++.
T Consensus 285 PKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIII 329 (744)
T KOG0741|consen 285 PKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIII 329 (744)
T ss_pred CcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEE
Confidence 5556777654 44444 445455555667777666666554
No 439
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=86.10 E-value=1.6 Score=44.39 Aligned_cols=30 Identities=30% Similarity=0.305 Sum_probs=21.8
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhc
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQ 232 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~ 232 (330)
...+++++.|+||||||. ++-.+|..+..+
T Consensus 174 ~e~~h~li~G~tGsGKs~-~i~~ll~~~~~~ 203 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSV-AIRKLLRWIRQR 203 (566)
T ss_pred ccccceEEEcCCCCCHHH-HHHHHHHHHHhc
Confidence 355799999999999994 444556665543
No 440
>PRK04195 replication factor C large subunit; Provisional
Probab=86.04 E-value=2.2 Score=42.46 Aligned_cols=16 Identities=25% Similarity=0.412 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCChhHH
Q psy17644 204 GRDIIGVAKTGSGKTG 219 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~ 219 (330)
.+.+++.||+|+|||.
T Consensus 39 ~~~lLL~GppG~GKTt 54 (482)
T PRK04195 39 KKALLLYGPPGVGKTS 54 (482)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4678999999999994
No 441
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.00 E-value=2.5 Score=43.10 Aligned_cols=16 Identities=25% Similarity=0.405 Sum_probs=13.1
Q ss_pred CCCccEEEeecccccC
Q psy17644 312 LNRVTFLVLDEADRMF 327 (330)
Q Consensus 312 l~~i~~lVvDEad~ll 327 (330)
....+++||||||+|-
T Consensus 116 ~~~~KVvIIDEah~Lt 131 (584)
T PRK14952 116 QSRYRIFIVDEAHMVT 131 (584)
T ss_pred cCCceEEEEECCCcCC
Confidence 3567899999999884
No 442
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=85.95 E-value=2.1 Score=42.94 Aligned_cols=17 Identities=24% Similarity=0.303 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
.+.+++.||+|+|||..
T Consensus 216 p~GILLyGPPGTGKT~L 232 (512)
T TIGR03689 216 PKGVLLYGPPGCGKTLI 232 (512)
T ss_pred CcceEEECCCCCcHHHH
Confidence 46799999999999953
No 443
>PTZ00424 helicase 45; Provisional
Probab=85.89 E-value=6.3 Score=37.79 Aligned_cols=71 Identities=13% Similarity=0.255 Sum_probs=50.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
..++||.|+|+.-|..+...+... +..+..++|+....++... ++. ..+|||||- .+. ..+++..+
T Consensus 267 ~~~~ivF~~t~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~-----~l~-~GiDip~v 336 (401)
T PTZ00424 267 ITQAIIYCNTRRKVDYLTKKMHER----DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTD-----LLA-RGIDVQQV 336 (401)
T ss_pred CCeEEEEecCcHHHHHHHHHHHHC----CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcc-----ccc-CCcCcccC
Confidence 467899999999998888877654 6678888998876654332 333 479999993 222 35567777
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 337 ~~VI~ 341 (401)
T PTZ00424 337 SLVIN 341 (401)
T ss_pred CEEEE
Confidence 77775
No 444
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=85.78 E-value=3.1 Score=42.72 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=51.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---h-CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---E-LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+.-|.+++..++.. ++.+..+++|.+.......+ . ...+|||||.. + ...+++.+
T Consensus 235 ~~~~~IIFc~tr~~~e~la~~L~~~----g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a-----~-~~GIDip~ 304 (607)
T PRK11057 235 RGKSGIIYCNSRAKVEDTAARLQSR----GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVA-----F-GMGINKPN 304 (607)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHhC----CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEech-----h-hccCCCCC
Confidence 3567899999999999999988765 67888888988765543332 2 24789999942 2 23556677
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+++||.
T Consensus 305 V~~VI~ 310 (607)
T PRK11057 305 VRFVVH 310 (607)
T ss_pred cCEEEE
Confidence 777764
No 445
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=85.76 E-value=2.2 Score=45.80 Aligned_cols=40 Identities=20% Similarity=0.412 Sum_probs=28.3
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
.+++++|+||||||+... .++..++.. .+++++|+=|-++
T Consensus 476 ~n~~I~G~TGSGKS~l~~-~li~q~~~~------~~~~v~IiD~g~s 515 (893)
T TIGR03744 476 AHLLILGPTGAGKSATLT-NLLMQVMAV------HRPRLFIVEAGNS 515 (893)
T ss_pred ccEEEECCCCCCHHHHHH-HHHHHHHHh------cCCEEEEEcCCCC
Confidence 478999999999995443 334444332 3689999988876
No 446
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=85.66 E-value=4.1 Score=37.61 Aligned_cols=15 Identities=33% Similarity=0.503 Sum_probs=12.8
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.|++|+|||.+
T Consensus 40 ~~ll~G~~G~GKt~~ 54 (319)
T PRK00440 40 HLLFAGPPGTGKTTA 54 (319)
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999943
No 447
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.62 E-value=0.73 Score=41.98 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=15.5
Q ss_pred CCCc-EEEEcCCCChhHHHHHHHHHHH
Q psy17644 203 SGRD-IIGVAKTGSGKTGAFIWPMLVH 228 (330)
Q Consensus 203 ~g~d-~i~~a~TGsGKT~a~llp~l~~ 228 (330)
..|. +|++++|||||+.+ +..++.|
T Consensus 125 ~kRGLviiVGaTGSGKSTt-mAaMi~y 150 (375)
T COG5008 125 AKRGLVIIVGATGSGKSTT-MAAMIGY 150 (375)
T ss_pred ccCceEEEECCCCCCchhh-HHHHhcc
Confidence 3344 55669999999833 3344444
No 448
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=85.48 E-value=4.8 Score=34.11 Aligned_cols=15 Identities=27% Similarity=0.195 Sum_probs=12.4
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-+++.+++|||||..
T Consensus 3 ~ili~G~~~sGKS~~ 17 (170)
T PRK05800 3 LILVTGGARSGKSRF 17 (170)
T ss_pred EEEEECCCCccHHHH
Confidence 478889999999943
No 449
>KOG0741|consensus
Probab=85.46 E-value=3.6 Score=41.09 Aligned_cols=69 Identities=20% Similarity=0.176 Sum_probs=41.5
Q ss_pred CCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhc------------CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCC
Q psy17644 171 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAAL------------SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPG 238 (330)
Q Consensus 171 ~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~------------~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~ 238 (330)
.||.++.-++.+...|.-.-.+.-.+.+.... .-..+++.+|.|||||....-.++. .
T Consensus 493 AFG~see~l~~~~~~Gmi~~g~~v~~il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~----------S 562 (744)
T KOG0741|consen 493 AFGISEEDLERFVMNGMINWGPPVTRILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIALS----------S 562 (744)
T ss_pred ccCCCHHHHHHHHhCCceeecccHHHHHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHHhh----------c
Confidence 36778877777777665444443333332211 1146899999999999543322221 2
Q ss_pred CCCeEEEEccc
Q psy17644 239 DGPMGLILAPT 249 (330)
Q Consensus 239 ~~~~vLil~Pt 249 (330)
.-|.+=|+.|-
T Consensus 563 ~FPFvKiiSpe 573 (744)
T KOG0741|consen 563 DFPFVKIISPE 573 (744)
T ss_pred CCCeEEEeChH
Confidence 46888788774
No 450
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=85.41 E-value=2.7 Score=37.32 Aligned_cols=53 Identities=11% Similarity=0.124 Sum_probs=32.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.-+++.+++|+|||.. +..++....+ ++-+++++.-- +-..++...+..++
T Consensus 24 ~g~~~~i~G~~GsGKt~l-~~~~~~~~~~-------~g~~~~y~~~e-~~~~~~~~~~~~~g 76 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVL-SQQFVYGALK-------QGKKVYVITTE-NTSKSYLKQMESVK 76 (234)
T ss_pred CCcEEEEECCCCCChHHH-HHHHHHHHHh-------CCCEEEEEEcC-CCHHHHHHHHHHCC
Confidence 356678889999999943 3333333222 35667776543 44566777666664
No 451
>PRK09694 helicase Cas3; Provisional
Probab=85.38 E-value=6 Score=42.37 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=47.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH-------HHHH-hCC----CeEEEEChHHHHHHHH
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ-------SKAL-ELG----AEIVVGTPGRIIDMVK 306 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~-------~~~l-~~~----~dIiV~TP~~L~~~l~ 306 (330)
.+.++||+++|+.-|.++++.+++... ....+.++++....... ...+ +++ ..|||+| +.++
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~-~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaT-----QViE 632 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN-TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVAT-----QVVE 632 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC-CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEEC-----cchh
Confidence 467899999999999999999987532 13467777877654332 1222 222 3699999 3333
Q ss_pred cCCCCCCCccEEEeec
Q psy17644 307 MGATKLNRVTFLVLDE 322 (330)
Q Consensus 307 ~~~~~l~~i~~lVvDE 322 (330)
++ .++ +++++|-|-
T Consensus 633 ~G-LDI-d~DvlItdl 646 (878)
T PRK09694 633 QS-LDL-DFDWLITQL 646 (878)
T ss_pred he-eec-CCCeEEECC
Confidence 32 222 355666654
No 452
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=85.28 E-value=1.9 Score=42.98 Aligned_cols=54 Identities=30% Similarity=0.423 Sum_probs=36.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHH-HHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVH-IMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~-i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
.|+-+++.+++|+|||. |++.++.+ +.. .+-++|+++- -+-..++.+.+..++-
T Consensus 20 ~g~~~Li~G~pGsGKT~-la~qfl~~g~~~-------~ge~~lyvs~-eE~~~~l~~~~~~~G~ 74 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTL-FSIQFLYNGIIH-------FDEPGVFVTF-EESPQDIIKNARSFGW 74 (484)
T ss_pred CCeEEEEEcCCCCCHHH-HHHHHHHHHHHh-------CCCCEEEEEE-ecCHHHHHHHHHHcCC
Confidence 56889999999999994 44444333 322 2456777764 4677777777777753
No 453
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=85.19 E-value=1.4 Score=46.24 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.6
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
..++++.|++|+|||..
T Consensus 203 ~~n~lL~G~pG~GKT~l 219 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAI 219 (731)
T ss_pred CCceEEECCCCCCHHHH
Confidence 45899999999999954
No 454
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=85.15 E-value=3.9 Score=41.10 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=51.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---hC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---EL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
.+++||.++|+.-|..+...+... .++++..++|+....++...+ +. ...|||||- .+. ..+++.++
T Consensus 367 ~~~~iVFv~s~~~a~~l~~~L~~~---~g~~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTd-----vl~-rGiDip~v 437 (518)
T PLN00206 367 KPPAVVFVSSRLGADLLANAITVV---TGLKALSIHGEKSMKERREVMKSFLVGEVPVIVATG-----VLG-RGVDLLRV 437 (518)
T ss_pred CCCEEEEcCCchhHHHHHHHHhhc---cCcceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEec-----Hhh-ccCCcccC
Confidence 468999999999998888777643 357788889988766554333 33 478999994 232 35567777
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
++||.
T Consensus 438 ~~VI~ 442 (518)
T PLN00206 438 RQVII 442 (518)
T ss_pred CEEEE
Confidence 77764
No 455
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=85.03 E-value=0.53 Score=43.17 Aligned_cols=19 Identities=37% Similarity=0.620 Sum_probs=16.9
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+.+++.++++|++|+|||.
T Consensus 30 ~~~~~pvLl~G~~GtGKT~ 48 (272)
T PF12775_consen 30 LSNGRPVLLVGPSGTGKTS 48 (272)
T ss_dssp HHCTEEEEEESSTTSSHHH
T ss_pred HHcCCcEEEECCCCCchhH
Confidence 3488999999999999995
No 456
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.99 E-value=6.4 Score=38.10 Aligned_cols=16 Identities=38% Similarity=0.258 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHHHH
Q psy17644 206 DIIGVAKTGSGKTGAF 221 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~ 221 (330)
.+|++||.|+|||.+.
T Consensus 40 a~lf~Gp~G~GKtt~A 55 (397)
T PRK14955 40 GYIFSGLRGVGKTTAA 55 (397)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999543
No 457
>KOG0330|consensus
Probab=84.97 E-value=4.1 Score=39.02 Aligned_cols=70 Identities=17% Similarity=0.151 Sum_probs=46.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh----CCCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE----LGAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
|..+||.|.|-.-+..+.-.++.+ ++....+.|..+.......+. ..++|+|||- +-.+..+...+
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~l----g~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TD------VaSRGLDip~V 369 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNL----GFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTD------VASRGLDIPHV 369 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhc----CcceecccchhhHHHHHHHHHHHhccCCcEEEecc------hhcccCCCCCc
Confidence 567889999977776666555554 778888888776655433332 2589999994 22335556677
Q ss_pred cEEE
Q psy17644 316 TFLV 319 (330)
Q Consensus 316 ~~lV 319 (330)
++||
T Consensus 370 d~VV 373 (476)
T KOG0330|consen 370 DVVV 373 (476)
T ss_pred eEEE
Confidence 7665
No 458
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=84.87 E-value=7.8 Score=36.69 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=58.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEC-CCchHHHHHHHhCC-CeEEEEChHHHHHHHHcCCCCCCCcc
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYG-GGSKWDQSKALELG-AEIVVGTPGRIIDMVKMGATKLNRVT 316 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~g-g~~~~~~~~~l~~~-~dIiV~TP~~L~~~l~~~~~~l~~i~ 316 (330)
++.-+||.+|+.+.+.|+...+++.... .++.++.+ .....+....++.| .+|+|+| .+++++. .+.+++
T Consensus 304 ~~~P~liF~p~I~~~eq~a~~lk~~~~~--~~i~~Vhs~d~~R~EkV~~fR~G~~~lLiTT-----TILERGV-Tfp~vd 375 (441)
T COG4098 304 TGRPVLIFFPEIETMEQVAAALKKKLPK--ETIASVHSEDQHRKEKVEAFRDGKITLLITT-----TILERGV-TFPNVD 375 (441)
T ss_pred cCCcEEEEecchHHHHHHHHHHHhhCCc--cceeeeeccCccHHHHHHHHHcCceEEEEEe-----ehhhccc-ccccce
Confidence 5677899999999999999999654332 23333333 23455666777775 6899999 4666544 467899
Q ss_pred EEEeecccccC
Q psy17644 317 FLVLDEADRMF 327 (330)
Q Consensus 317 ~lVvDEad~ll 327 (330)
++|++=-|+++
T Consensus 376 V~Vlgaeh~vf 386 (441)
T COG4098 376 VFVLGAEHRVF 386 (441)
T ss_pred EEEecCCcccc
Confidence 99999888776
No 459
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=84.74 E-value=11 Score=35.82 Aligned_cols=58 Identities=16% Similarity=0.007 Sum_probs=29.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH-HHHHHHHHHHHh
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE-LSQQIYNEAKRF 263 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~-La~Qi~~~~~~l 263 (330)
|.=+.+++++|+|||...+--+++..+.. ...+.+.+++||.--.. -..++.+.+..+
T Consensus 126 G~ItEI~G~~GsGKTql~lqlav~~qlp~--~~gg~~~~vvyIdTE~tF~peRl~~ia~~~ 184 (344)
T PLN03187 126 RCITEAFGEFRSGKTQLAHTLCVTTQLPT--EMGGGNGKVAYIDTEGTFRPDRIVPIAERF 184 (344)
T ss_pred CeEEEEecCCCCChhHHHHHHHHHHhcch--hhCCCCceEEEEEcCCCCCHHHHHHHHHHc
Confidence 35566889999999943222222222211 11122468888876332 234444444444
No 460
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=84.62 E-value=2.1 Score=43.86 Aligned_cols=15 Identities=20% Similarity=0.434 Sum_probs=12.9
Q ss_pred CCccEEEeecccccC
Q psy17644 313 NRVTFLVLDEADRMF 327 (330)
Q Consensus 313 ~~i~~lVvDEad~ll 327 (330)
.+.+++||||+|+|.
T Consensus 123 g~~KV~IIDEvh~Ls 137 (618)
T PRK14951 123 GRFKVFMIDEVHMLT 137 (618)
T ss_pred CCceEEEEEChhhCC
Confidence 467899999999985
No 461
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=84.49 E-value=2.7 Score=46.46 Aligned_cols=56 Identities=18% Similarity=0.090 Sum_probs=41.7
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.+++++.|.-|||||.+..--++..++.. ...-++|+|+-|+.-|..+...+....
T Consensus 10 ~~~~~~~a~agsgkt~~l~~~~~~~~~~~-----~~~~~i~~~t~t~~aa~em~~Ri~~~L 65 (1141)
T TIGR02784 10 KTSAWVSANAGSGKTHVLTQRVIRLLLNG-----VPPSKILCLTYTKAAAAEMQNRVFDRL 65 (1141)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHcC-----CCCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 57899999999999966555555444432 124588999999999999888876554
No 462
>COG0305 DnaB Replicative DNA helicase [DNA replication, recombination, and repair]
Probab=84.44 E-value=5.3 Score=39.11 Aligned_cols=113 Identities=19% Similarity=0.223 Sum_probs=54.4
Q ss_pred CCCcEEEE-cCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCc-h
Q psy17644 203 SGRDIIGV-AKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGS-K 280 (330)
Q Consensus 203 ~g~d~i~~-a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~-~ 280 (330)
...|+++. |.+|.||| +|++-++..+... .+.|.+++ .+.--+.|++..+... ..++....+-.|.. .
T Consensus 194 ~~~dLii~AaRP~mGKT-afalnia~n~a~~-----~~~~v~iF--SLEM~~eql~~R~Ls~--~s~v~~~kirtg~l~~ 263 (435)
T COG0305 194 RPGDLIIVAARPGMGKT-ALALNIALNAAAD-----GRKPVAIF--SLEMSEEQLVMRLLSS--ESGIESSKLRTGRLSD 263 (435)
T ss_pred ccCCEEEEccCCCCChH-HHHHHHHHHHHHh-----cCCCeEEE--EccCCHHHHHHHhhcc--ccccchhccccccccH
Confidence 44566666 88999999 4555555554442 12343333 3333455655554332 22333333333432 2
Q ss_pred HHH------HHHHhCCCeEEE-EChHHHHHHH----HcCCCCCCCccEEEeecccccC
Q psy17644 281 WDQ------SKALELGAEIVV-GTPGRIIDMV----KMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 281 ~~~------~~~l~~~~dIiV-~TP~~L~~~l----~~~~~~l~~i~~lVvDEad~ll 327 (330)
..+ ...+... .|.| -||+-=..-+ ++-.. -..+.++|+|=.+.|.
T Consensus 264 ~d~~~l~~a~~~l~~~-~i~IdD~~~~si~eir~~aRrlk~-~~~l~~i~iDYLqLm~ 319 (435)
T COG0305 264 DEWERLIKAASELSEA-PIFIDDTPGLTITEIRSKARRLKL-KHNLGLIVIDYLQLMT 319 (435)
T ss_pred HHHHHHHHHHHHHhhC-CeeecCCCcCCHHHHHHHHHHHHH-hcCccEEEEEEEEeec
Confidence 222 1223333 3544 3444322222 21111 2238999999887764
No 463
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=84.38 E-value=1.9 Score=37.33 Aligned_cols=27 Identities=22% Similarity=0.353 Sum_probs=16.2
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
..++++.|.||||||.+. ..++..++.
T Consensus 38 ~~h~li~G~tgsGKS~~l-~~ll~~l~~ 64 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLL-RTLLLSLAL 64 (205)
T ss_dssp S-SEEEE--TTSSHHHHH-HHHHHHHHT
T ss_pred CceEEEEcCCCCCccHHH-HHHHHHHHH
Confidence 348999999999999543 334444444
No 464
>PRK08084 DNA replication initiation factor; Provisional
Probab=84.35 E-value=2.1 Score=38.25 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.++.++++||+|+|||.
T Consensus 44 ~~~~l~l~Gp~G~GKTh 60 (235)
T PRK08084 44 HSGYIYLWSREGAGRSH 60 (235)
T ss_pred CCCeEEEECCCCCCHHH
Confidence 34678999999999993
No 465
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=84.24 E-value=7.6 Score=41.99 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC---CCeEEEEChHHHHHHHHcCCCCCC
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL---GAEIVVGTPGRIIDMVKMGATKLN 313 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~---~~dIiV~TP~~L~~~l~~~~~~l~ 313 (330)
+.++||+|.++..+..+.+.++.. .|+++..++||.+..+..+. ++. ++.|+|||- +-....++.
T Consensus 493 ~~KvLVF~~~~~t~~~L~~~L~~~---~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTd------vgseGlNlq 563 (956)
T PRK04914 493 SEKVLVICAKAATALQLEQALRER---EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSE------IGSEGRNFQ 563 (956)
T ss_pred CCeEEEEeCcHHHHHHHHHHHhhc---cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEech------hhccCCCcc
Confidence 679999999999999999888542 36788899999886655333 332 588999993 222355677
Q ss_pred CccEEEe
Q psy17644 314 RVTFLVL 320 (330)
Q Consensus 314 ~i~~lVv 320 (330)
.+.+||.
T Consensus 564 ~a~~VIn 570 (956)
T PRK04914 564 FASHLVL 570 (956)
T ss_pred cccEEEE
Confidence 7766654
No 466
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=84.19 E-value=1.9 Score=37.98 Aligned_cols=37 Identities=22% Similarity=0.248 Sum_probs=23.1
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
.|.-+++.+++|+|||. +++.++..... .+-+++++.
T Consensus 22 ~g~i~~i~G~~GsGKT~-l~~~la~~~~~-------~~~~v~yi~ 58 (225)
T PRK09361 22 RGTITQIYGPPGSGKTN-ICLQLAVEAAK-------NGKKVIYID 58 (225)
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHHH-------CCCeEEEEE
Confidence 35667888999999994 34444444433 244556654
No 467
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=83.92 E-value=12 Score=31.69 Aligned_cols=17 Identities=41% Similarity=0.581 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
++|-++++||+|+|||.
T Consensus 1 ~~r~ivl~Gpsg~GK~~ 17 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKST 17 (183)
T ss_dssp SSSEEEEESSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 36778999999999994
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=83.72 E-value=2.2 Score=42.71 Aligned_cols=54 Identities=26% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|+-+++.+++|+|||. |++.++.+.+.+ .+-++|++ -+-+-..|+.+.+..++
T Consensus 30 ~Gs~~li~G~pGsGKT~-l~~qf~~~~~~~------~ge~~lyi-s~ee~~~~i~~~~~~~g 83 (509)
T PRK09302 30 KGRPTLVSGTAGTGKTL-FALQFLVNGIKR------FDEPGVFV-TFEESPEDIIRNVASFG 83 (509)
T ss_pred CCcEEEEEeCCCCCHHH-HHHHHHHHHHHh------cCCCEEEE-EccCCHHHHHHHHHHcC
Confidence 46778889999999993 444444443331 15566666 45566677777777764
No 469
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=83.59 E-value=2.7 Score=39.55 Aligned_cols=39 Identities=21% Similarity=0.164 Sum_probs=25.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
.|+=+.+.+++|+||| .++++++....+ .+.+++||..-
T Consensus 54 ~G~iteI~Gp~GsGKT-tLal~~~~~~~~-------~g~~~vyId~E 92 (325)
T cd00983 54 KGRIIEIYGPESSGKT-TLALHAIAEAQK-------LGGTVAFIDAE 92 (325)
T ss_pred CCeEEEEECCCCCCHH-HHHHHHHHHHHH-------cCCCEEEECcc
Confidence 3567788899999999 556665555443 24556666543
No 470
>KOG0341|consensus
Probab=83.50 E-value=3.7 Score=39.36 Aligned_cols=56 Identities=21% Similarity=0.230 Sum_probs=43.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEECh
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTP 298 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP 298 (330)
..|.|||.+-.+.-+..|++.+-- .|+..+.++||......... ++. .-||+|+|-
T Consensus 420 T~PpVLIFaEkK~DVD~IhEYLLl----KGVEavaIHGGKDQedR~~ai~afr~gkKDVLVATD 479 (610)
T KOG0341|consen 420 TSPPVLIFAEKKADVDDIHEYLLL----KGVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATD 479 (610)
T ss_pred CCCceEEEeccccChHHHHHHHHH----ccceeEEeecCcchhHHHHHHHHHhcCCCceEEEec
Confidence 579999999999998888887643 27889999999987665433 333 369999993
No 471
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.48 E-value=2.5 Score=43.38 Aligned_cols=16 Identities=38% Similarity=0.258 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHHHH
Q psy17644 206 DIIGVAKTGSGKTGAF 221 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~ 221 (330)
.+|++||.|.|||.+.
T Consensus 40 a~Lf~Gp~GvGKttlA 55 (620)
T PRK14954 40 GYIFSGLRGVGKTTAA 55 (620)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999543
No 472
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=83.32 E-value=6 Score=40.39 Aligned_cols=71 Identities=18% Similarity=0.242 Sum_probs=50.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh----CCCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE----LGAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+.++||.|+||..|.+++..+... ++.+..++||.+.......+. ...+|||||- .+. ..+++.++
T Consensus 224 ~~~~IIf~~sr~~~e~la~~L~~~----g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~-----a~~-~GID~p~v 293 (591)
T TIGR01389 224 GQSGIIYASSRKKVEELAERLESQ----GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATN-----AFG-MGIDKPNV 293 (591)
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEec-----hhh-ccCcCCCC
Confidence 567899999999999999988764 577888899887655443322 3579999993 222 24456677
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
++||.
T Consensus 294 ~~VI~ 298 (591)
T TIGR01389 294 RFVIH 298 (591)
T ss_pred CEEEE
Confidence 77664
No 473
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=83.22 E-value=5.2 Score=37.75 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=20.1
Q ss_pred HHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 194 QAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 194 Q~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
..++-.+......|++.|++|+||+.+
T Consensus 12 ~~~~~~~a~~~~pVLI~GE~GtGK~~l 38 (329)
T TIGR02974 12 LEQVSRLAPLDRPVLIIGERGTGKELI 38 (329)
T ss_pred HHHHHHHhCCCCCEEEECCCCChHHHH
Confidence 344444455778899999999999943
No 474
>PRK06893 DNA replication initiation factor; Validated
Probab=83.19 E-value=1.7 Score=38.62 Aligned_cols=15 Identities=20% Similarity=-0.002 Sum_probs=12.5
Q ss_pred CcEEEEcCCCChhHH
Q psy17644 205 RDIIGVAKTGSGKTG 219 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~ 219 (330)
..++++|++|+|||.
T Consensus 40 ~~l~l~G~~G~GKTh 54 (229)
T PRK06893 40 PFFYIWGGKSSGKSH 54 (229)
T ss_pred CeEEEECCCCCCHHH
Confidence 346889999999993
No 475
>KOG0780|consensus
Probab=83.08 E-value=7.3 Score=37.49 Aligned_cols=86 Identities=17% Similarity=0.149 Sum_probs=45.4
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc-c-HHHHHHHHHHHHHhccCCCceEEEEECCCchHHH-
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP-T-RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ- 283 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P-t-r~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~- 283 (330)
+++++-.|+|||.+..--+ +.+++ .|-++.++|- | |+-|. +.++..+...++.++..|.....-.-
T Consensus 104 imfVGLqG~GKTTtc~KlA--~y~kk------kG~K~~LvcaDTFRagAf---DQLkqnA~k~~iP~ygsyte~dpv~ia 172 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLA--YYYKK------KGYKVALVCADTFRAGAF---DQLKQNATKARVPFYGSYTEADPVKIA 172 (483)
T ss_pred EEEEeccCCCcceeHHHHH--HHHHh------cCCceeEEeecccccchH---HHHHHHhHhhCCeeEecccccchHHHH
Confidence 4455889999995433222 22332 4666666664 3 55553 34444444445555544443332211
Q ss_pred ----HHHHhCCCeEEEE-ChHHHHH
Q psy17644 284 ----SKALELGAEIVVG-TPGRIID 303 (330)
Q Consensus 284 ----~~~l~~~~dIiV~-TP~~L~~ 303 (330)
.+..+.+++|||+ |.+|+..
T Consensus 173 ~egv~~fKke~fdvIIvDTSGRh~q 197 (483)
T KOG0780|consen 173 SEGVDRFKKENFDVIIVDTSGRHKQ 197 (483)
T ss_pred HHHHHHHHhcCCcEEEEeCCCchhh
Confidence 1223457887654 8888744
No 476
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.95 E-value=3.8 Score=42.04 Aligned_cols=18 Identities=22% Similarity=0.121 Sum_probs=14.1
Q ss_pred CcEEEEcCCCChhHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~l 222 (330)
..+|+.++.|+|||.+..
T Consensus 39 ha~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIAR 56 (624)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 357889999999995543
No 477
>PHA00350 putative assembly protein
Probab=82.93 E-value=2.2 Score=41.33 Aligned_cols=17 Identities=24% Similarity=0.088 Sum_probs=13.3
Q ss_pred EEEEcCCCChhHHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFIW 223 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~ll 223 (330)
.++.|..|||||+..+.
T Consensus 4 ~l~tG~pGSGKT~~aV~ 20 (399)
T PHA00350 4 YAIVGRPGSYKSYEAVV 20 (399)
T ss_pred EEEecCCCCchhHHHHH
Confidence 36679999999976654
No 478
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=82.87 E-value=2.7 Score=42.06 Aligned_cols=53 Identities=26% Similarity=0.307 Sum_probs=35.0
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|.-+++.+++|+|||. |++.++...+. ++-+++|++- .+...++...+..++
T Consensus 272 ~g~~~li~G~~G~GKT~-l~~~~~~~~~~-------~g~~~~yis~-e~~~~~i~~~~~~~g 324 (509)
T PRK09302 272 RGSIILVSGATGTGKTL-LASKFAEAACR-------RGERCLLFAF-EESRAQLIRNARSWG 324 (509)
T ss_pred CCcEEEEEcCCCCCHHH-HHHHHHHHHHh-------CCCcEEEEEe-cCCHHHHHHHHHHcC
Confidence 45677788999999994 44444444433 3567777754 455677777777664
No 479
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=82.68 E-value=3 Score=44.15 Aligned_cols=40 Identities=20% Similarity=0.238 Sum_probs=26.9
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L 252 (330)
.+++++|+||||||..... ++..++. .+++++|+=|.++-
T Consensus 431 ~n~~I~G~tGsGKS~~~~~-l~~~~~~-------~g~~v~iiD~~~sy 470 (797)
T TIGR02746 431 YNIAVVGGSGAGKSFFMQE-LIVDNLS-------RGGKVWVIDVGRSY 470 (797)
T ss_pred cceEEEcCCCCCHHHHHHH-HHHHHHh-------CCCEEEEEeCCCCH
Confidence 4799999999999955433 3333333 35777887776543
No 480
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=82.65 E-value=4.3 Score=39.42 Aligned_cols=41 Identities=15% Similarity=0.102 Sum_probs=26.9
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr 250 (330)
+.-+++.|++|+||| .|+.++.+...+. ..+++++++..-.
T Consensus 113 ~nplfi~G~~GlGKT--HLl~Aign~~~~~----~~~a~v~y~~se~ 153 (408)
T COG0593 113 YNPLFIYGGVGLGKT--HLLQAIGNEALAN----GPNARVVYLTSED 153 (408)
T ss_pred CCcEEEECCCCCCHH--HHHHHHHHHHHhh----CCCceEEeccHHH
Confidence 567888899999999 4555555444332 1345777776644
No 481
>PF05729 NACHT: NACHT domain
Probab=82.60 E-value=2.7 Score=34.31 Aligned_cols=25 Identities=16% Similarity=0.357 Sum_probs=17.0
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhc
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQ 232 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~ 232 (330)
+++.|+.|+|||. ++-.++..+...
T Consensus 3 l~I~G~~G~GKSt-ll~~~~~~~~~~ 27 (166)
T PF05729_consen 3 LWISGEPGSGKST-LLRKLAQQLAEE 27 (166)
T ss_pred EEEECCCCCChHH-HHHHHHHHHHhc
Confidence 6788999999994 444455555443
No 482
>KOG2227|consensus
Probab=82.50 E-value=2.6 Score=41.34 Aligned_cols=52 Identities=15% Similarity=0.271 Sum_probs=28.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc-HHHHHHHHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT-RELSQQIYNEA 260 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt-r~La~Qi~~~~ 260 (330)
.+..+.+++.+|+|||.+. .-++.++-+. ...+.+++|-=| ...+..++..+
T Consensus 174 t~gSlYVsG~PGtgkt~~l-~rvl~~~~~~-----~~~~~~v~inc~sl~~~~aiF~kI 226 (529)
T KOG2227|consen 174 TSGSLYVSGQPGTGKTALL-SRVLDSLSKS-----SKSPVTVYINCTSLTEASAIFKKI 226 (529)
T ss_pred cCcceEeeCCCCcchHHHH-HHHHHhhhhh-----cccceeEEEeeccccchHHHHHHH
Confidence 3468999999999999432 1133333221 234555555444 25555555543
No 483
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=82.48 E-value=2.4 Score=34.73 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=17.5
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
+.++++.+|||| +++-.+++.+..
T Consensus 3 v~VvG~~~sGKT-Tl~~~Li~~l~~ 26 (140)
T PF03205_consen 3 VQVVGPKNSGKT-TLIRKLINELKR 26 (140)
T ss_dssp EEEEESTTSSHH-HHHHHHHHHHHH
T ss_pred EEEECCCCCCHH-HHHHHHHHHHhH
Confidence 578899999999 455556666654
No 484
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=82.43 E-value=1.9 Score=31.95 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=34.8
Q ss_pred eEEEEcccHHHHHHHH-HHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH
Q psy17644 242 MGLILAPTRELSQQIY-NEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI 301 (330)
Q Consensus 242 ~vLil~Ptr~La~Qi~-~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L 301 (330)
++|++|++---...+. ..+++.++..++.+....+.... .......+|+|++||.--
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~~~~~~~~~~~---~~~~~~~~D~il~~~~i~ 58 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIEVEVSAGSILE---VEEIADDADLILLTPQIA 58 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTECEEEEEEETTT---HHHHHTT-SEEEEEESSG
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCceEEEEecccc---cccccCCCcEEEEcCccc
Confidence 5788888755545555 55666666667766655554221 233445689999998544
No 485
>PRK09354 recA recombinase A; Provisional
Probab=82.35 E-value=3.2 Score=39.47 Aligned_cols=28 Identities=21% Similarity=0.197 Sum_probs=19.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
.|+=+.+.+++|||||. ++++++....+
T Consensus 59 ~G~IteI~G~~GsGKTt-Lal~~~~~~~~ 86 (349)
T PRK09354 59 RGRIVEIYGPESSGKTT-LALHAIAEAQK 86 (349)
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHHH
Confidence 35677788999999994 55555555443
No 486
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=82.33 E-value=1 Score=38.69 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=14.7
Q ss_pred CCcEEEEcCCCChhHHHHHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWP 224 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp 224 (330)
...++++||.|||||..|..-
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L 23 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQL 23 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHH
Confidence 456889999999999766543
No 487
>COG3451 VirB4 Type IV secretory pathway, VirB4 components [Intracellular trafficking and secretion]
Probab=82.29 E-value=1.8 Score=45.71 Aligned_cols=14 Identities=36% Similarity=0.539 Sum_probs=12.9
Q ss_pred CcEEEEcCCCChhH
Q psy17644 205 RDIIGVAKTGSGKT 218 (330)
Q Consensus 205 ~d~i~~a~TGsGKT 218 (330)
.+.+++|+||+|||
T Consensus 437 ghT~I~G~tGaGKT 450 (796)
T COG3451 437 GHTLIIGPTGAGKT 450 (796)
T ss_pred CCeEEECCCCCCHH
Confidence 47999999999999
No 488
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=82.18 E-value=17 Score=34.47 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=50.8
Q ss_pred CCHHHHHhhhhhc----CCC---cEEEEcCCCChhHHHHHHHHHHHHHhcCCCC--------------CCCCCeEEEEcc
Q psy17644 190 PTPIQAQAVPAAL----SGR---DIIGVAKTGSGKTGAFIWPMLVHIMDQKELE--------------PGDGPMGLILAP 248 (330)
Q Consensus 190 pt~iQ~~~i~~~~----~g~---d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~--------------~~~~~~vLil~P 248 (330)
.+|+|...|..+. +|| -.++.|+.|.||+. +...+...++...+.. .++.|-+.++.|
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~-lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDA-LIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHH-HHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 4567777776654 443 67899999999983 3334455566532211 235688888888
Q ss_pred cH----HHHHHHHHHHHHhcc---CCCceEEEEECCC
Q psy17644 249 TR----ELSQQIYNEAKRFGK---GYNLSVVCCYGGG 278 (330)
Q Consensus 249 tr----~La~Qi~~~~~~l~~---~~~~~~~~~~gg~ 278 (330)
.. --+.|+.+....+.. ..+.+++.+....
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae 118 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAA 118 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchH
Confidence 53 235555554444432 2245666665433
No 489
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=82.07 E-value=8 Score=39.04 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=13.4
Q ss_pred CCCccEEEeecccccC
Q psy17644 312 LNRVTFLVLDEADRMF 327 (330)
Q Consensus 312 l~~i~~lVvDEad~ll 327 (330)
....+++||||||+|-
T Consensus 115 ~~~~KVvIIDEad~Lt 130 (535)
T PRK08451 115 MARFKIFIIDEVHMLT 130 (535)
T ss_pred cCCeEEEEEECcccCC
Confidence 4577899999999984
No 490
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=81.90 E-value=15 Score=34.54 Aligned_cols=116 Identities=15% Similarity=0.174 Sum_probs=61.3
Q ss_pred CCHHHHHhhhhhc----CCC---cEEEEcCCCChhHHHHHHHHHHHHHhcCCC-------------CCCCCCeEEEEccc
Q psy17644 190 PTPIQAQAVPAAL----SGR---DIIGVAKTGSGKTGAFIWPMLVHIMDQKEL-------------EPGDGPMGLILAPT 249 (330)
Q Consensus 190 pt~iQ~~~i~~~~----~g~---d~i~~a~TGsGKT~a~llp~l~~i~~~~~~-------------~~~~~~~vLil~Pt 249 (330)
+.|+|...+..+. ++| -+++.|+.|.||+. +...+...++..... ..++.|-..+|.|.
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~-lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~ 82 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVES-LVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPE 82 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHH-HHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecC
Confidence 4567766666554 444 68899999999983 333344555543211 12345888888885
Q ss_pred H---H-HHHHHHHHHHHhcc----CCCceEEEEECCCchHHH-----HHHHhC---CCeE-EEEC-hHHHHHHHHc
Q psy17644 250 R---E-LSQQIYNEAKRFGK----GYNLSVVCCYGGGSKWDQ-----SKALEL---GAEI-VVGT-PGRIIDMVKM 307 (330)
Q Consensus 250 r---~-La~Qi~~~~~~l~~----~~~~~~~~~~gg~~~~~~-----~~~l~~---~~dI-iV~T-P~~L~~~l~~ 307 (330)
. . -+.||. .+..+.. ..+.+++.+......... .+.+.. +.-+ ++|+ |.+|+.-+..
T Consensus 83 ~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~S 157 (319)
T PRK06090 83 KEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVS 157 (319)
T ss_pred cCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHh
Confidence 3 2 344443 3333322 234567766654433221 122222 2333 3443 6677765543
No 491
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=81.66 E-value=4.5 Score=37.31 Aligned_cols=28 Identities=25% Similarity=0.497 Sum_probs=18.6
Q ss_pred EChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 296 GTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 296 ~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
--|+-|..++. ++..=++|.|||.|+|.
T Consensus 89 eK~gDlaaiLt----~Le~~DVLFIDEIHrl~ 116 (332)
T COG2255 89 EKPGDLAAILT----NLEEGDVLFIDEIHRLS 116 (332)
T ss_pred cChhhHHHHHh----cCCcCCeEEEehhhhcC
Confidence 33555555554 35566789999999874
No 492
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=81.55 E-value=6.5 Score=37.14 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=41.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHH-------HHhC-CCeEEEECh
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK-------ALEL-GAEIVVGTP 298 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~-------~l~~-~~dIiV~TP 298 (330)
.+.++||+|+|+.-|..++..+++.+. +..+..++|+........ .++. ...|||||.
T Consensus 221 ~~~~~lVf~~t~~~~~~~~~~L~~~~~--~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~ 286 (358)
T TIGR01587 221 KGGKIAIIVNTVDRAQEFYQQLKENAP--EEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQ 286 (358)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHhhcC--CCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECc
Confidence 357899999999999999999887643 346778888876544322 2332 467999984
No 493
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=81.47 E-value=14 Score=34.62 Aligned_cols=58 Identities=14% Similarity=-0.028 Sum_probs=31.4
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH-HHHHHHHHHHHh
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE-LSQQIYNEAKRF 263 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~-La~Qi~~~~~~l 263 (330)
|.=+.+++++|+|||...+..+++..+.. ...+.+.+|+||.--.. -..++.+.+..+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~--~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPR--EMGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcch--hhcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 45677889999999943322222222110 11123568888874432 245555555554
No 494
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=81.30 E-value=5.6 Score=37.91 Aligned_cols=72 Identities=19% Similarity=0.319 Sum_probs=48.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEE
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFL 318 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~l 318 (330)
.+.++||+++|+.-|..++..++... .+..+..++|........+.. ..+|+|||. .+.+ .+++..+ ++
T Consensus 271 ~~~k~LIf~nt~~~~~~l~~~L~~~~--~~~~~~~l~g~~~~~~R~~~~--~~~iLVaTd-----v~~r-GiDi~~~-~v 339 (357)
T TIGR03158 271 PGERGAIILDSLDEVNRLSDLLQQQG--LGDDIGRITGFAPKKDRERAM--QFDILLGTS-----TVDV-GVDFKRD-WL 339 (357)
T ss_pred CCCeEEEEECCHHHHHHHHHHHhhhC--CCceEEeeecCCCHHHHHHhc--cCCEEEEec-----HHhc-ccCCCCc-eE
Confidence 46689999999999999999998752 244566677766665543332 468999994 3443 3444444 56
Q ss_pred Eee
Q psy17644 319 VLD 321 (330)
Q Consensus 319 VvD 321 (330)
|++
T Consensus 340 i~~ 342 (357)
T TIGR03158 340 IFS 342 (357)
T ss_pred EEC
Confidence 665
No 495
>PHA00012 I assembly protein
Probab=81.28 E-value=9.2 Score=36.09 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.2
Q ss_pred EEEEcCCCChhHHHHHHHHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i 229 (330)
-++.|..|||||+..+..++..+
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L 26 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKL 26 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHH
Confidence 36779999999987776555544
No 496
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=81.26 E-value=19 Score=34.25 Aligned_cols=58 Identities=16% Similarity=0.164 Sum_probs=35.4
Q ss_pred CHHHHHhhhhhcC--C---CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCC---------------CCCCCeEEEEccc
Q psy17644 191 TPIQAQAVPAALS--G---RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE---------------PGDGPMGLILAPT 249 (330)
Q Consensus 191 t~iQ~~~i~~~~~--g---~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~---------------~~~~~~vLil~Pt 249 (330)
+|+|...+..+.+ + +-+++.|+.|.||+... ..+...++...... .++.|-..++.|.
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA-~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~ 80 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFA-QHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPE 80 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHH-HHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecc
Confidence 4677777766553 2 36788999999999433 33445555543110 1345777778775
No 497
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=81.03 E-value=6 Score=40.77 Aligned_cols=46 Identities=13% Similarity=0.244 Sum_probs=25.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
.+++++-..+..+..++.. +....+ ....++-+++.||+|+|||.+
T Consensus 81 ~~ldel~~~~~ki~~l~~~-------l~~~~~-~~~~~~illL~GP~GsGKTTl 126 (637)
T TIGR00602 81 ETQHELAVHKKKIEEVETW-------LKAQVL-ENAPKRILLITGPSGCGKSTT 126 (637)
T ss_pred CCHHHhcCcHHHHHHHHHH-------HHhccc-ccCCCcEEEEECCCCCCHHHH
Confidence 3466666666665554321 000000 012334478889999999954
No 498
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=80.89 E-value=2.7 Score=39.08 Aligned_cols=44 Identities=20% Similarity=0.188 Sum_probs=24.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP 248 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P 248 (330)
.|.=+.+++++|+|||. |++.++.......... ..+.+++||.-
T Consensus 94 ~g~i~ei~G~~g~GKT~-l~~~~~~~~~~~~~~g-~~~~~~~yi~t 137 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQ-ICHQLAVNVQLPEEKG-GLGGKAVYIDT 137 (310)
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHhcCCcccC-CCcceEEEEEC
Confidence 35567788999999993 4444433332111111 11237788763
No 499
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=80.79 E-value=1.5 Score=35.67 Aligned_cols=44 Identities=25% Similarity=0.341 Sum_probs=25.6
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQ 255 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Q 255 (330)
+..|.-+++.++.|+||| +|+-.++..+ +...-|-.||-.|++.
T Consensus 19 l~~~~~i~l~G~lGaGKT-tl~~~l~~~l----------g~~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 19 LDFGTVVLLKGDLGAGKT-TLVQGLLQGL----------GIQGNVTSPTFTLVNE 62 (133)
T ss_pred CCCCCEEEEEcCCCCCHH-HHHHHHHHHc----------CCCCcccCCCeeeeee
Confidence 345566777899999999 3444344332 1112366787555443
No 500
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=80.52 E-value=20 Score=37.15 Aligned_cols=76 Identities=16% Similarity=0.330 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---HHHhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS---KALEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||+|+|+..|..+...+... ++.+..++|+....... ..++. ...|+||| ..+. ..+.+..
T Consensus 445 ~g~~viIf~~t~~~ae~L~~~L~~~----gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t-----~~L~-rGfdlp~ 514 (652)
T PRK05298 445 KGERVLVTTLTKRMAEDLTDYLKEL----GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGI-----NLLR-EGLDIPE 514 (652)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHhhc----ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEe-----CHHh-CCccccC
Confidence 5789999999999999988888764 67778887876643332 22322 46888888 3333 3456777
Q ss_pred ccEEEeeccc
Q psy17644 315 VTFLVLDEAD 324 (330)
Q Consensus 315 i~~lVvDEad 324 (330)
++++|+=+++
T Consensus 515 v~lVii~d~e 524 (652)
T PRK05298 515 VSLVAILDAD 524 (652)
T ss_pred CcEEEEeCCc
Confidence 8877765554
Done!