Query psy17644
Match_columns 330
No_of_seqs 362 out of 2444
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 19:19:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fe2_A Probable ATP-dependent 100.0 4E-38 1.4E-42 282.2 19.8 190 141-330 3-192 (242)
2 2db3_A ATP-dependent RNA helic 100.0 6E-37 2E-41 297.3 20.5 178 153-330 42-219 (434)
3 1wrb_A DJVLGB; RNA helicase, D 100.0 3.2E-34 1.1E-38 258.2 15.1 178 153-330 7-190 (253)
4 3dkp_A Probable ATP-dependent 100.0 3.8E-34 1.3E-38 256.4 13.0 181 145-329 3-190 (245)
5 3iuy_A Probable ATP-dependent 100.0 1.3E-33 4.5E-38 250.2 16.0 171 159-330 11-183 (228)
6 2i4i_A ATP-dependent RNA helic 100.0 1.6E-32 5.3E-37 263.1 20.0 176 155-330 3-191 (417)
7 3fmo_B ATP-dependent RNA helic 100.0 3.9E-33 1.3E-37 258.0 15.1 166 155-328 77-249 (300)
8 2oxc_A Probable ATP-dependent 100.0 1.7E-32 5.8E-37 243.8 16.8 166 159-330 16-182 (230)
9 3bor_A Human initiation factor 100.0 9.5E-33 3.2E-37 246.6 15.1 167 159-330 22-189 (237)
10 2pl3_A Probable ATP-dependent 100.0 5.4E-32 1.8E-36 241.0 18.5 181 143-330 6-187 (236)
11 3ber_A Probable ATP-dependent 100.0 3.7E-32 1.3E-36 244.8 17.4 161 165-330 41-202 (249)
12 1vec_A ATP-dependent RNA helic 100.0 9E-32 3.1E-36 234.3 18.5 159 167-330 3-162 (206)
13 1q0u_A Bstdead; DEAD protein, 100.0 1.1E-32 3.8E-37 242.9 12.6 161 165-330 2-166 (219)
14 1qde_A EIF4A, translation init 100.0 6.6E-32 2.3E-36 238.3 15.8 165 160-330 7-171 (224)
15 3ly5_A ATP-dependent RNA helic 100.0 1.1E-31 3.7E-36 243.5 16.2 163 167-330 52-217 (262)
16 1t6n_A Probable ATP-dependent 100.0 7.4E-31 2.5E-35 231.1 18.0 165 159-328 6-172 (220)
17 2gxq_A Heat resistant RNA depe 100.0 6.1E-31 2.1E-35 229.0 17.0 159 168-330 2-160 (207)
18 2j0s_A ATP-dependent RNA helic 100.0 6.3E-30 2.2E-34 244.8 18.1 165 161-330 31-195 (410)
19 3eiq_A Eukaryotic initiation f 100.0 2.9E-28 9.7E-33 233.0 17.3 166 160-330 33-199 (414)
20 1s2m_A Putative ATP-dependent 100.0 2.5E-28 8.6E-33 232.7 16.7 160 164-328 18-177 (400)
21 1fuu_A Yeast initiation factor 100.0 4.8E-28 1.7E-32 229.7 15.7 163 162-330 16-178 (394)
22 1xti_A Probable ATP-dependent 100.0 1.7E-27 5.8E-32 225.9 17.3 158 167-329 8-167 (391)
23 3sqw_A ATP-dependent RNA helic 99.9 8E-28 2.7E-32 241.2 14.8 163 167-330 17-191 (579)
24 3fmp_B ATP-dependent RNA helic 99.9 1.3E-27 4.4E-32 234.0 13.7 157 164-328 89-249 (479)
25 3pey_A ATP-dependent RNA helic 99.9 3.3E-27 1.1E-31 223.6 15.9 155 165-328 3-159 (395)
26 1hv8_A Putative ATP-dependent 99.9 4.4E-27 1.5E-31 220.6 16.6 158 166-330 5-163 (367)
27 3i5x_A ATP-dependent RNA helic 99.9 2.1E-27 7.2E-32 236.9 14.5 156 174-330 79-242 (563)
28 3fht_A ATP-dependent RNA helic 99.9 3.4E-27 1.2E-31 225.2 15.1 160 161-328 19-182 (412)
29 2z0m_A 337AA long hypothetical 99.9 2E-26 6.8E-31 213.9 17.2 145 174-330 1-145 (337)
30 1tf5_A Preprotein translocase 99.9 3.1E-26 1.1E-30 233.0 13.9 184 123-330 21-220 (844)
31 3oiy_A Reverse gyrase helicase 99.9 5.2E-26 1.8E-30 218.4 11.8 141 178-329 10-154 (414)
32 4a2p_A RIG-I, retinoic acid in 99.9 8.5E-25 2.9E-29 216.6 15.1 142 186-330 4-146 (556)
33 3tbk_A RIG-I helicase domain; 99.9 1.9E-24 6.6E-29 213.6 14.7 140 188-330 3-143 (555)
34 2ykg_A Probable ATP-dependent 99.9 4.4E-24 1.5E-28 217.9 15.1 146 180-328 4-150 (696)
35 2v1x_A ATP-dependent DNA helic 99.9 8E-24 2.7E-28 212.3 14.8 149 166-330 18-181 (591)
36 3l9o_A ATP-dependent RNA helic 99.9 4.2E-25 1.4E-29 235.1 5.6 144 168-330 163-306 (1108)
37 2fsf_A Preprotein translocase 99.9 3.7E-24 1.3E-28 217.4 12.2 133 185-330 71-211 (853)
38 3fho_A ATP-dependent RNA helic 99.9 1.6E-24 5.4E-29 214.1 8.7 157 163-328 115-273 (508)
39 1oyw_A RECQ helicase, ATP-depe 99.9 4.3E-24 1.5E-28 211.7 11.6 149 167-330 2-155 (523)
40 2zj8_A DNA helicase, putative 99.9 8.4E-24 2.9E-28 217.1 14.0 151 168-329 2-153 (720)
41 4a2q_A RIG-I, retinoic acid in 99.9 1.4E-23 4.7E-28 217.8 15.5 142 185-329 244-386 (797)
42 2va8_A SSO2462, SKI2-type heli 99.9 1.3E-23 4.5E-28 215.4 14.6 152 167-329 8-160 (715)
43 3b6e_A Interferon-induced heli 99.9 1.1E-23 3.6E-28 183.8 9.7 141 186-329 30-177 (216)
44 1gku_B Reverse gyrase, TOP-RG; 99.9 1.4E-23 4.8E-28 222.9 11.9 136 180-330 48-191 (1054)
45 2p6r_A Afuhel308 helicase; pro 99.9 6.9E-24 2.4E-28 217.1 7.8 151 168-330 2-154 (702)
46 1nkt_A Preprotein translocase 99.9 3.4E-23 1.2E-27 210.8 11.8 133 184-329 107-247 (922)
47 4ddu_A Reverse gyrase; topoiso 99.9 8.1E-23 2.8E-27 217.5 13.8 132 185-328 75-210 (1104)
48 4a2w_A RIG-I, retinoic acid in 99.9 7.3E-23 2.5E-27 215.4 12.7 142 185-329 244-386 (936)
49 2ipc_A Preprotein translocase 99.9 2.5E-22 8.5E-27 204.0 13.9 131 184-327 75-215 (997)
50 4f92_B U5 small nuclear ribonu 99.9 3.7E-21 1.3E-25 211.7 15.4 147 174-329 911-1061(1724)
51 4gl2_A Interferon-induced heli 99.8 9.6E-22 3.3E-26 200.7 8.6 138 188-328 6-150 (699)
52 1gm5_A RECG; helicase, replica 99.8 1.8E-20 6E-25 192.8 16.2 136 177-326 357-502 (780)
53 1wp9_A ATP-dependent RNA helic 99.8 5.4E-20 1.8E-24 177.5 17.6 131 189-328 9-139 (494)
54 2xgj_A ATP-dependent RNA helic 99.8 1.3E-20 4.6E-25 198.9 12.9 125 186-330 84-208 (1010)
55 4f92_B U5 small nuclear ribonu 99.8 1.3E-20 4.5E-25 207.4 12.0 140 186-328 76-221 (1724)
56 4a4z_A Antiviral helicase SKI2 99.8 2.1E-20 7E-25 197.4 12.2 125 189-330 39-163 (997)
57 1rif_A DAR protein, DNA helica 99.8 3.1E-20 1.1E-24 169.6 9.2 127 188-327 112-238 (282)
58 3llm_A ATP-dependent RNA helic 99.8 1.1E-19 3.7E-24 161.8 11.1 139 180-329 52-192 (235)
59 2oca_A DAR protein, ATP-depend 99.8 1.9E-19 6.6E-24 177.2 10.1 128 187-327 111-238 (510)
60 2eyq_A TRCF, transcription-rep 99.8 5E-18 1.7E-22 181.6 18.3 141 172-326 586-737 (1151)
61 3crv_A XPD/RAD3 related DNA he 99.8 1.9E-18 6.6E-23 172.1 13.8 129 189-328 3-187 (551)
62 2jlq_A Serine protease subunit 99.8 1.1E-18 3.7E-23 169.8 8.5 121 186-326 1-122 (451)
63 2fwr_A DNA repair protein RAD2 99.7 9.3E-18 3.2E-22 163.6 13.9 115 188-329 92-207 (472)
64 2fz4_A DNA repair protein RAD2 99.7 4.1E-17 1.4E-21 145.5 14.4 115 188-329 92-207 (237)
65 2whx_A Serine protease/ntpase/ 99.7 3.3E-18 1.1E-22 172.3 3.7 135 172-326 155-289 (618)
66 3o8b_A HCV NS3 protease/helica 99.7 1.1E-17 3.8E-22 168.3 6.3 114 189-326 217-330 (666)
67 2vl7_A XPD; helicase, unknown 99.7 3.6E-17 1.2E-21 162.5 7.9 127 185-327 4-188 (540)
68 2w00_A HSDR, R.ECOR124I; ATP-b 99.6 4.7E-16 1.6E-20 164.0 10.4 140 176-327 251-414 (1038)
69 2xau_A PRE-mRNA-splicing facto 99.6 1.3E-15 4.5E-20 157.0 13.5 152 164-328 69-223 (773)
70 3h1t_A Type I site-specific re 99.6 1.7E-16 5.7E-21 159.2 6.3 128 188-328 177-316 (590)
71 2wv9_A Flavivirin protease NS2 99.6 1.4E-16 4.7E-21 161.7 4.4 125 183-326 204-344 (673)
72 2z83_A Helicase/nucleoside tri 99.6 1.1E-15 3.7E-20 148.9 8.1 110 197-325 14-123 (459)
73 1yks_A Genome polyprotein [con 99.6 6.9E-17 2.3E-21 156.6 -2.1 100 200-326 4-111 (440)
74 2v6i_A RNA helicase; membrane, 99.6 8.5E-15 2.9E-19 141.5 10.4 105 203-326 1-105 (431)
75 4a15_A XPD helicase, ATP-depen 99.5 1E-14 3.5E-19 146.9 9.5 82 189-277 3-88 (620)
76 1z63_A Helicase of the SNF2/RA 99.5 4.3E-14 1.5E-18 138.5 9.3 124 188-328 36-163 (500)
77 3rc3_A ATP-dependent RNA helic 99.5 5.6E-14 1.9E-18 142.5 6.9 111 194-330 145-255 (677)
78 1z3i_X Similar to RAD54-like; 99.4 6.8E-12 2.3E-16 127.1 14.7 134 189-327 55-205 (644)
79 3dmq_A RNA polymerase-associat 99.3 5.7E-13 2E-17 140.6 6.3 130 188-328 152-287 (968)
80 3mwy_W Chromo domain-containin 99.3 4.2E-12 1.4E-16 131.6 10.6 130 188-327 235-380 (800)
81 3jux_A Protein translocase sub 99.3 1.3E-11 4.5E-16 123.9 13.0 128 188-327 74-258 (822)
82 1w36_D RECD, exodeoxyribonucle 98.9 1.1E-09 3.8E-14 110.1 5.1 72 191-268 151-224 (608)
83 4b3f_X DNA-binding protein smu 98.3 1.8E-06 6.2E-11 87.2 9.0 68 188-263 188-256 (646)
84 2gk6_A Regulator of nonsense t 98.2 5.9E-06 2E-10 83.2 12.0 70 187-263 178-247 (624)
85 2xzl_A ATP-dependent helicase 98.1 1.2E-05 4.2E-10 83.0 12.0 70 187-263 358-427 (802)
86 2wjy_A Regulator of nonsense t 98.1 1.6E-05 5.4E-10 82.1 11.8 70 187-263 354-423 (800)
87 3upu_A ATP-dependent DNA helic 98.0 1.7E-05 5.8E-10 76.7 10.1 70 184-260 20-94 (459)
88 3e1s_A Exodeoxyribonuclease V, 97.9 1.7E-05 5.9E-10 78.9 8.1 65 188-260 188-252 (574)
89 2o0j_A Terminase, DNA packagin 97.5 0.00038 1.3E-08 65.7 10.3 118 189-327 163-286 (385)
90 1c4o_A DNA nucleotide excision 97.4 0.00035 1.2E-08 70.7 8.3 68 186-265 6-78 (664)
91 3cpe_A Terminase, DNA packagin 97.3 0.00096 3.3E-08 66.5 10.5 118 189-326 163-285 (592)
92 3lfu_A DNA helicase II; SF1 he 97.0 0.002 6.9E-08 64.5 9.8 72 188-265 8-79 (647)
93 1uaa_A REP helicase, protein ( 96.5 0.0054 1.9E-07 61.9 8.1 71 189-265 2-72 (673)
94 1pjr_A PCRA; DNA repair, DNA r 96.4 0.0087 3E-07 61.0 8.9 71 188-264 10-80 (724)
95 3u4q_A ATP-dependent helicase/ 96.2 0.01 3.4E-07 64.2 8.5 72 188-263 9-80 (1232)
96 3ec2_A DNA replication protein 96.1 0.022 7.5E-07 47.0 8.6 17 203-219 37-53 (180)
97 3vkw_A Replicase large subunit 96.1 0.0073 2.5E-07 57.8 6.1 44 206-262 163-206 (446)
98 2b8t_A Thymidine kinase; deoxy 95.7 0.018 6.2E-07 50.0 6.5 91 203-326 11-101 (223)
99 1xx6_A Thymidine kinase; NESG, 95.7 0.015 5.1E-07 49.3 5.8 40 203-250 7-46 (191)
100 2d7d_A Uvrabc system protein B 95.7 0.024 8.2E-07 57.2 8.1 66 189-265 12-82 (661)
101 2p6n_A ATP-dependent RNA helic 95.6 0.13 4.4E-06 43.1 11.2 71 240-320 54-128 (191)
102 2orw_A Thymidine kinase; TMTK, 95.5 0.013 4.4E-07 49.2 4.5 40 203-250 2-41 (184)
103 2hjv_A ATP-dependent RNA helic 95.2 0.15 5.1E-06 41.3 10.1 73 239-321 34-110 (163)
104 2rb4_A ATP-dependent RNA helic 95.0 0.12 4.2E-06 42.4 9.3 72 239-320 33-108 (175)
105 1fuk_A Eukaryotic initiation f 94.9 0.19 6.6E-06 40.7 9.9 73 239-321 29-105 (165)
106 3te6_A Regulatory protein SIR3 94.8 0.12 4.2E-06 47.1 9.3 18 203-220 44-61 (318)
107 2kjq_A DNAA-related protein; s 94.8 0.031 1E-06 45.1 4.7 17 203-219 35-51 (149)
108 3eaq_A Heat resistant RNA depe 94.7 0.16 5.6E-06 43.2 9.4 71 240-320 31-105 (212)
109 2j9r_A Thymidine kinase; TK1, 94.4 0.034 1.2E-06 47.9 4.4 40 204-251 28-67 (214)
110 1w4r_A Thymidine kinase; type 94.4 0.06 2.1E-06 45.6 5.9 39 203-249 19-57 (195)
111 2v1u_A Cell division control p 94.4 0.083 2.8E-06 48.5 7.3 18 203-220 43-60 (387)
112 1l8q_A Chromosomal replication 94.1 0.15 5.3E-06 46.1 8.4 17 203-219 36-52 (324)
113 2r6a_A DNAB helicase, replicat 94.1 0.26 8.8E-06 47.2 10.3 117 201-328 200-327 (454)
114 2zpa_A Uncharacterized protein 93.4 0.098 3.4E-06 52.5 6.2 59 189-258 175-235 (671)
115 1t5i_A C_terminal domain of A 93.4 0.38 1.3E-05 39.3 8.8 72 239-320 30-105 (172)
116 3pfi_A Holliday junction ATP-d 93.3 0.74 2.5E-05 41.6 11.5 17 204-220 55-71 (338)
117 1d2n_A N-ethylmaleimide-sensit 93.3 0.11 3.9E-06 45.7 5.7 17 204-220 64-80 (272)
118 3i5x_A ATP-dependent RNA helic 93.2 1.1 3.8E-05 43.5 13.3 77 239-322 338-418 (563)
119 2jgn_A DBX, DDX3, ATP-dependen 93.2 0.3 1E-05 40.5 8.0 72 239-320 45-120 (185)
120 2chg_A Replication factor C sm 93.1 0.45 1.5E-05 39.4 9.1 15 205-219 39-53 (226)
121 2orv_A Thymidine kinase; TP4A 93.0 0.16 5.3E-06 44.3 6.0 40 203-250 18-57 (234)
122 3hjh_A Transcription-repair-co 93.0 0.55 1.9E-05 45.3 10.6 52 203-265 13-64 (483)
123 1fnn_A CDC6P, cell division co 92.9 0.24 8.1E-06 45.6 7.6 15 206-220 46-60 (389)
124 3bh0_A DNAB-like replicative h 92.9 0.34 1.2E-05 43.9 8.5 53 201-262 65-117 (315)
125 4a1f_A DNAB helicase, replicat 92.8 0.18 6.2E-06 46.4 6.6 115 202-327 44-169 (338)
126 2z4s_A Chromosomal replication 92.8 0.46 1.6E-05 45.2 9.6 16 204-219 130-145 (440)
127 2qby_B CDC6 homolog 3, cell di 92.6 0.14 4.7E-06 47.2 5.6 17 204-220 45-61 (384)
128 2i4i_A ATP-dependent RNA helic 92.6 0.98 3.4E-05 41.7 11.5 72 239-320 275-350 (417)
129 2z43_A DNA repair and recombin 92.3 0.54 1.9E-05 42.7 9.1 59 203-263 106-165 (324)
130 3e2i_A Thymidine kinase; Zn-bi 92.3 0.13 4.4E-06 44.3 4.5 41 203-251 27-67 (219)
131 2q6t_A DNAB replication FORK h 92.2 0.47 1.6E-05 45.2 8.8 116 202-328 198-324 (444)
132 3sqw_A ATP-dependent RNA helic 92.1 1.8 6.2E-05 42.4 13.3 77 239-322 287-367 (579)
133 3i32_A Heat resistant RNA depe 92.1 1.1 3.8E-05 40.3 10.8 71 240-320 28-102 (300)
134 3dm5_A SRP54, signal recogniti 91.9 0.53 1.8E-05 44.9 8.7 86 205-301 101-194 (443)
135 3syl_A Protein CBBX; photosynt 91.9 0.17 5.9E-06 45.2 5.1 18 203-220 66-83 (309)
136 2dr3_A UPF0273 protein PH0284; 91.7 0.25 8.4E-06 42.3 5.7 53 202-263 21-73 (247)
137 3u61_B DNA polymerase accessor 91.4 0.97 3.3E-05 40.6 9.6 14 207-220 51-64 (324)
138 2db3_A ATP-dependent RNA helic 90.6 1.5 5.3E-05 41.2 10.6 70 241-320 301-374 (434)
139 3pey_A ATP-dependent RNA helic 90.6 1.5 5.1E-05 39.9 10.3 75 239-323 242-320 (395)
140 3fht_A ATP-dependent RNA helic 90.6 2.1 7.1E-05 39.3 11.4 71 240-320 266-340 (412)
141 1njg_A DNA polymerase III subu 90.5 3.3 0.00011 34.3 11.8 15 206-220 47-61 (250)
142 1hqc_A RUVB; extended AAA-ATPa 90.4 0.46 1.6E-05 42.6 6.4 18 203-220 37-54 (324)
143 1e9r_A Conjugal transfer prote 90.3 0.29 9.8E-06 46.3 5.2 28 203-231 52-79 (437)
144 1n0w_A DNA repair protein RAD5 90.3 1.5 5E-05 37.2 9.4 21 201-221 21-41 (243)
145 1s2m_A Putative ATP-dependent 90.3 1.4 4.7E-05 40.5 9.8 72 239-320 257-332 (400)
146 2zts_A Putative uncharacterize 89.8 0.24 8.2E-06 42.5 3.9 53 203-263 29-81 (251)
147 1hv8_A Putative ATP-dependent 89.7 1.7 5.9E-05 39.0 9.9 72 239-320 237-312 (367)
148 2v1x_A ATP-dependent DNA helic 89.3 1.8 6.1E-05 42.8 10.2 72 239-320 266-341 (591)
149 3vfd_A Spastin; ATPase, microt 89.3 0.55 1.9E-05 43.7 6.2 18 203-220 147-164 (389)
150 2i1q_A DNA repair and recombin 89.2 1.4 4.9E-05 39.6 8.8 60 203-263 97-166 (322)
151 1xti_A Probable ATP-dependent 89.0 1.1 3.7E-05 41.0 7.9 74 239-322 249-326 (391)
152 2qby_A CDC6 homolog 1, cell di 88.7 0.36 1.2E-05 44.1 4.4 18 203-220 44-61 (386)
153 2j0s_A ATP-dependent RNA helic 88.5 4.7 0.00016 37.0 12.1 71 240-320 276-350 (410)
154 1oyw_A RECQ helicase, ATP-depe 88.4 1.4 4.9E-05 42.7 8.7 72 239-320 235-310 (523)
155 1jbk_A CLPB protein; beta barr 88.2 2 6.7E-05 34.4 8.3 17 204-220 43-59 (195)
156 2d7d_A Uvrabc system protein B 88.2 2.3 7.7E-05 42.7 10.2 77 239-325 444-524 (661)
157 3kl4_A SRP54, signal recogniti 88.0 1.3 4.3E-05 42.2 7.8 87 204-301 97-191 (433)
158 1sxj_E Activator 1 40 kDa subu 88.0 1.1 3.7E-05 40.7 7.2 15 206-220 38-52 (354)
159 2p65_A Hypothetical protein PF 87.3 2.9 9.9E-05 33.3 8.7 17 204-220 43-59 (187)
160 3n70_A Transport activator; si 87.2 0.49 1.7E-05 37.4 3.8 20 201-220 21-40 (145)
161 3co5_A Putative two-component 87.2 0.4 1.4E-05 37.8 3.2 19 201-219 24-42 (143)
162 2yjt_D ATP-dependent RNA helic 87.0 0.12 4.1E-06 42.3 0.0 55 239-297 29-87 (170)
163 2qgz_A Helicase loader, putati 86.5 0.7 2.4E-05 41.7 4.9 17 204-220 152-168 (308)
164 2w58_A DNAI, primosome compone 85.5 1.5 5.1E-05 36.3 6.1 16 205-220 55-70 (202)
165 3cmu_A Protein RECA, recombina 85.4 3.1 0.00011 46.9 10.0 41 203-251 1426-1466(2050)
166 4a74_A DNA repair and recombin 85.2 1.8 6.3E-05 36.2 6.7 19 201-219 22-40 (231)
167 1wp9_A ATP-dependent RNA helic 85.2 2.5 8.5E-05 39.3 8.2 93 213-321 340-444 (494)
168 3io5_A Recombination and repai 85.1 1.4 4.9E-05 40.1 6.1 43 203-252 28-70 (333)
169 2px0_A Flagellar biosynthesis 85.0 1.3 4.3E-05 39.8 5.8 19 203-221 104-122 (296)
170 4ag6_A VIRB4 ATPase, type IV s 84.9 1 3.5E-05 41.8 5.3 18 203-220 34-51 (392)
171 3m6a_A ATP-dependent protease 84.8 1.5 5.3E-05 42.8 6.7 17 203-219 107-123 (543)
172 2eyu_A Twitching motility prot 84.6 1 3.5E-05 39.6 4.9 19 201-219 22-40 (261)
173 2eyq_A TRCF, transcription-rep 84.5 1.5 5.2E-05 46.9 7.0 79 239-325 811-893 (1151)
174 2v6i_A RNA helicase; membrane, 84.1 1.7 5.9E-05 41.0 6.6 54 240-298 171-225 (431)
175 1c4o_A DNA nucleotide excision 84.1 4.7 0.00016 40.3 10.1 77 239-325 438-518 (664)
176 1vma_A Cell division protein F 83.2 3.3 0.00011 37.3 7.7 18 203-220 103-120 (306)
177 2xau_A PRE-mRNA-splicing facto 83.2 10 0.00034 38.7 12.2 74 240-319 303-392 (773)
178 2w0m_A SSO2452; RECA, SSPF, un 83.1 1.1 3.9E-05 37.5 4.5 19 201-219 20-38 (235)
179 3bgw_A DNAB-like replicative h 82.9 2.2 7.5E-05 40.6 6.7 39 202-248 195-233 (444)
180 3bos_A Putative DNA replicatio 82.8 1.6 5.5E-05 36.7 5.3 18 203-220 51-68 (242)
181 1yks_A Genome polyprotein [con 82.2 1.8 6.1E-05 41.0 5.9 68 240-319 177-245 (440)
182 1a5t_A Delta prime, HOLB; zinc 81.7 5.9 0.0002 35.7 9.0 40 191-231 4-50 (334)
183 1xp8_A RECA protein, recombina 81.4 1.6 5.4E-05 40.5 4.9 29 202-231 72-100 (366)
184 1u94_A RECA protein, recombina 81.2 1.7 5.8E-05 40.1 5.1 39 202-248 61-99 (356)
185 2zr9_A Protein RECA, recombina 81.2 1.6 5.6E-05 40.1 5.0 29 202-231 59-87 (349)
186 2l8b_A Protein TRAI, DNA helic 81.0 1.1 3.8E-05 37.4 3.4 61 191-258 36-98 (189)
187 2ffh_A Protein (FFH); SRP54, s 80.8 4.8 0.00016 38.0 8.2 88 203-301 97-192 (425)
188 3o8b_A HCV NS3 protease/helica 80.8 2.1 7.2E-05 43.0 5.9 67 239-319 395-461 (666)
189 2gno_A DNA polymerase III, gam 80.7 4.2 0.00014 36.5 7.4 15 206-220 20-34 (305)
190 3tbk_A RIG-I helicase domain; 80.6 4.2 0.00014 38.8 8.0 94 215-320 370-476 (555)
191 2oca_A DAR protein, ATP-depend 80.6 10 0.00034 36.1 10.7 76 240-324 347-426 (510)
192 3h4m_A Proteasome-activating n 80.4 0.76 2.6E-05 40.4 2.4 52 166-220 13-67 (285)
193 3u4q_B ATP-dependent helicase/ 80.3 3 0.0001 44.7 7.3 49 208-262 5-53 (1166)
194 2z0m_A 337AA long hypothetical 80.0 3.8 0.00013 36.3 6.9 69 239-321 219-291 (337)
195 1cr0_A DNA primase/helicase; R 79.7 2.2 7.4E-05 37.8 5.2 20 201-220 32-51 (296)
196 1pzn_A RAD51, DNA repair and r 79.7 7.3 0.00025 35.6 8.9 18 203-220 130-147 (349)
197 3hr8_A Protein RECA; alpha and 79.6 1.6 5.6E-05 40.3 4.4 39 203-249 60-98 (356)
198 2va8_A SSO2462, SKI2-type heli 79.4 9.2 0.00031 38.3 10.3 76 239-320 251-362 (715)
199 3nwn_A Kinesin-like protein KI 79.4 1.1 3.6E-05 41.6 3.0 24 197-220 96-121 (359)
200 4etp_A Kinesin-like protein KA 79.0 2 6.8E-05 40.4 4.9 25 197-221 132-158 (403)
201 1nlf_A Regulatory protein REPA 78.6 3.7 0.00013 35.9 6.4 23 198-220 24-46 (279)
202 4b4t_M 26S protease regulatory 78.4 0.82 2.8E-05 43.5 2.0 54 164-220 175-231 (434)
203 2oap_1 GSPE-2, type II secreti 78.3 1.7 5.7E-05 42.3 4.2 37 181-219 238-275 (511)
204 1p9r_A General secretion pathw 77.9 3 0.0001 39.3 5.8 17 203-219 166-182 (418)
205 3iij_A Coilin-interacting nucl 77.9 1.3 4.4E-05 35.9 2.9 21 200-220 7-27 (180)
206 2qz4_A Paraplegin; AAA+, SPG7, 77.8 3.8 0.00013 35.1 6.1 18 203-220 38-55 (262)
207 3eiq_A Eukaryotic initiation f 77.8 3 0.0001 38.2 5.7 71 240-320 280-354 (414)
208 3uk6_A RUVB-like 2; hexameric 77.8 3.1 0.00011 37.7 5.8 18 203-220 69-86 (368)
209 1bg2_A Kinesin; motor protein, 77.7 1.3 4.6E-05 40.3 3.2 24 197-220 69-94 (325)
210 3t0q_A AGR253WP; kinesin, alph 77.3 1.6 5.6E-05 40.1 3.7 26 196-221 76-103 (349)
211 1f9v_A Kinesin-like protein KA 76.9 1.8 6.1E-05 39.9 3.8 26 196-221 75-102 (347)
212 2y65_A Kinesin, kinesin heavy 76.9 1.4 5E-05 40.8 3.2 24 197-220 76-101 (365)
213 3rc3_A ATP-dependent RNA helic 76.8 8.3 0.00028 38.7 8.9 74 241-325 321-400 (677)
214 1lvg_A Guanylate kinase, GMP k 76.8 1.9 6.6E-05 35.8 3.7 17 203-219 3-19 (198)
215 1kgd_A CASK, peripheral plasma 76.7 1.3 4.5E-05 36.1 2.6 18 202-219 3-20 (180)
216 1xwi_A SKD1 protein; VPS4B, AA 76.7 4.6 0.00016 36.4 6.5 49 166-220 8-61 (322)
217 1lv7_A FTSH; alpha/beta domain 76.7 3.8 0.00013 35.3 5.7 17 204-220 45-61 (257)
218 3cf0_A Transitional endoplasmi 76.5 0.92 3.2E-05 40.6 1.7 53 165-220 10-65 (301)
219 1goj_A Kinesin, kinesin heavy 76.4 1.6 5.5E-05 40.3 3.3 24 198-221 73-98 (355)
220 3lre_A Kinesin-like protein KI 76.3 1.6 5.5E-05 40.3 3.3 25 197-221 97-123 (355)
221 4a14_A Kinesin, kinesin-like p 76.3 1.5 5.3E-05 40.2 3.2 24 197-220 75-100 (344)
222 2vvg_A Kinesin-2; motor protei 76.1 1.6 5.4E-05 40.3 3.2 24 198-221 82-107 (350)
223 1qvr_A CLPB protein; coiled co 76.0 38 0.0013 34.8 13.9 16 204-219 191-206 (854)
224 3dc4_A Kinesin-like protein NO 75.8 1.3 4.5E-05 40.7 2.6 24 197-220 86-111 (344)
225 2bjv_A PSP operon transcriptio 75.8 2.1 7E-05 37.2 3.7 18 202-219 27-44 (265)
226 1sxj_C Activator 1 40 kDa subu 75.7 10 0.00035 34.1 8.6 14 207-220 49-62 (340)
227 4gl2_A Interferon-induced heli 75.7 1.8 6E-05 43.3 3.7 74 240-319 400-487 (699)
228 2h58_A Kinesin-like protein KI 75.7 1.6 5.6E-05 39.8 3.2 25 197-221 72-98 (330)
229 2nr8_A Kinesin-like protein KI 75.6 1.6 5.3E-05 40.4 3.0 24 197-220 95-120 (358)
230 3b6u_A Kinesin-like protein KI 75.6 1.6 5.4E-05 40.7 3.0 24 197-220 93-118 (372)
231 2xxa_A Signal recognition part 75.4 6.1 0.00021 37.4 7.2 17 205-221 101-117 (433)
232 3bfn_A Kinesin-like protein KI 75.4 1.6 5.6E-05 40.8 3.1 23 199-221 92-116 (388)
233 2zfi_A Kinesin-like protein KI 75.3 1.7 5.8E-05 40.4 3.2 24 197-220 81-106 (366)
234 2chq_A Replication factor C sm 75.2 11 0.00037 33.0 8.5 15 206-220 40-54 (319)
235 1z5z_A Helicase of the SNF2/RA 75.2 17 0.00058 31.8 9.7 92 212-320 92-189 (271)
236 1w36_B RECB, exodeoxyribonucle 75.2 6.1 0.00021 42.4 7.9 60 203-263 16-79 (1180)
237 1q57_A DNA primase/helicase; d 75.1 2.4 8.2E-05 40.8 4.3 52 201-260 239-290 (503)
238 3gbj_A KIF13B protein; kinesin 75.1 1.6 5.6E-05 40.2 3.0 25 197-221 84-110 (354)
239 2wv9_A Flavivirin protease NS2 75.1 3.6 0.00012 41.4 5.7 69 239-319 409-478 (673)
240 1x88_A Kinesin-like protein KI 75.0 1.5 5.2E-05 40.5 2.8 24 197-220 80-105 (359)
241 3u06_A Protein claret segregat 74.7 1.6 5.4E-05 41.2 2.9 25 197-221 130-156 (412)
242 1t5c_A CENP-E protein, centrom 74.6 1.7 5.9E-05 40.0 3.0 25 197-221 69-95 (349)
243 3jvv_A Twitching mobility prot 74.5 1.9 6.7E-05 39.7 3.4 16 203-218 122-137 (356)
244 2jlq_A Serine protease subunit 74.5 3.9 0.00013 38.7 5.6 54 240-298 188-242 (451)
245 1v8k_A Kinesin-like protein KI 74.5 1.8 6.1E-05 40.8 3.1 25 197-221 146-172 (410)
246 1v5w_A DMC1, meiotic recombina 74.5 4.2 0.00014 37.0 5.7 59 203-263 121-180 (343)
247 3b85_A Phosphate starvation-in 74.1 2.8 9.6E-05 35.4 4.0 30 191-220 9-38 (208)
248 3cob_A Kinesin heavy chain-lik 74.1 1.5 5.1E-05 40.7 2.5 25 197-221 71-97 (369)
249 2ykg_A Probable ATP-dependent 74.1 4.5 0.00015 40.2 6.2 76 239-320 397-485 (696)
250 1ixz_A ATP-dependent metallopr 74.0 2.5 8.4E-05 36.4 3.8 51 164-219 10-64 (254)
251 2rep_A Kinesin-like protein KI 74.0 2 7E-05 39.9 3.4 24 197-220 107-132 (376)
252 3cmw_A Protein RECA, recombina 73.8 4.7 0.00016 44.8 6.6 51 203-264 1430-1480(1706)
253 3nbx_X ATPase RAVA; AAA+ ATPas 73.5 3 0.0001 40.3 4.6 25 195-219 32-56 (500)
254 2heh_A KIF2C protein; kinesin, 73.5 1.8 6.3E-05 40.4 2.9 24 197-220 126-151 (387)
255 2wbe_C Bipolar kinesin KRP-130 73.4 1.6 5.6E-05 40.5 2.6 24 197-220 92-117 (373)
256 2j37_W Signal recognition part 73.1 20 0.00067 34.6 10.2 16 205-220 102-117 (504)
257 3eie_A Vacuolar protein sortin 73.0 4.5 0.00015 36.3 5.4 50 165-220 13-67 (322)
258 1ofh_A ATP-dependent HSL prote 72.9 7.2 0.00025 34.1 6.7 18 203-220 49-66 (310)
259 2qor_A Guanylate kinase; phosp 72.2 2.1 7.1E-05 35.6 2.8 20 200-219 8-27 (204)
260 2owm_A Nckin3-434, related to 72.1 2.2 7.5E-05 40.6 3.2 25 197-221 128-154 (443)
261 2r44_A Uncharacterized protein 72.0 1.7 5.6E-05 39.2 2.2 20 200-219 42-61 (331)
262 3vaa_A Shikimate kinase, SK; s 71.5 2.1 7E-05 35.5 2.6 18 203-220 24-41 (199)
263 1qhx_A CPT, protein (chloramph 71.3 2.2 7.5E-05 34.3 2.6 17 204-220 3-19 (178)
264 2whx_A Serine protease/ntpase/ 71.3 7 0.00024 38.8 6.7 67 240-318 355-422 (618)
265 3hws_A ATP-dependent CLP prote 71.0 6.4 0.00022 35.8 6.1 18 203-220 50-67 (363)
266 2j41_A Guanylate kinase; GMP, 70.6 2.3 7.8E-05 35.1 2.6 18 202-219 4-21 (207)
267 2gza_A Type IV secretion syste 70.6 2.6 9E-05 38.8 3.3 19 201-219 172-190 (361)
268 1rj9_A FTSY, signal recognitio 70.5 5.1 0.00017 36.0 5.1 27 203-231 101-127 (304)
269 1tue_A Replication protein E1; 70.5 2.6 8.8E-05 35.9 2.9 75 137-229 4-82 (212)
270 2p6r_A Afuhel308 helicase; pro 70.4 13 0.00043 37.2 8.5 75 240-320 242-346 (702)
271 1xjc_A MOBB protein homolog; s 70.3 5.8 0.0002 32.4 5.0 13 207-219 7-19 (169)
272 2ewv_A Twitching motility prot 70.2 2.7 9.4E-05 38.9 3.3 19 201-219 133-151 (372)
273 2x8a_A Nuclear valosin-contain 70.2 1.1 3.9E-05 39.5 0.6 52 165-219 5-59 (274)
274 3tr0_A Guanylate kinase, GMP k 70.1 2.4 8E-05 34.9 2.6 17 203-219 6-22 (205)
275 2ehv_A Hypothetical protein PH 70.1 4.7 0.00016 34.1 4.6 22 200-221 26-47 (251)
276 3ney_A 55 kDa erythrocyte memb 69.8 2.5 8.4E-05 35.6 2.6 18 202-219 17-34 (197)
277 1zp6_A Hypothetical protein AT 69.6 1.9 6.4E-05 35.2 1.9 18 202-219 7-24 (191)
278 1u0j_A DNA replication protein 69.4 8.5 0.00029 33.9 6.1 44 176-222 73-122 (267)
279 4b4t_L 26S protease subunit RP 68.9 1.7 5.9E-05 41.3 1.6 54 164-220 175-231 (437)
280 3d8b_A Fidgetin-like protein 1 68.9 16 0.00054 33.2 8.2 18 203-220 116-133 (357)
281 3trf_A Shikimate kinase, SK; a 68.9 2.5 8.5E-05 34.2 2.5 17 204-220 5-21 (185)
282 3tau_A Guanylate kinase, GMP k 68.7 3.3 0.00011 34.6 3.3 18 203-220 7-24 (208)
283 4b4t_J 26S protease regulatory 68.7 2.5 8.7E-05 39.7 2.7 53 165-220 143-198 (405)
284 4b4t_H 26S protease regulatory 68.6 3 0.0001 39.9 3.2 54 164-220 203-259 (467)
285 3a8t_A Adenylate isopentenyltr 68.5 2.9 9.8E-05 38.3 3.0 17 205-221 41-57 (339)
286 1iy2_A ATP-dependent metallopr 68.5 3.5 0.00012 36.0 3.5 50 165-219 35-88 (278)
287 1ex7_A Guanylate kinase; subst 68.4 2.7 9.1E-05 35.0 2.5 15 205-219 2-16 (186)
288 3bs4_A Uncharacterized protein 68.4 7.3 0.00025 34.2 5.5 53 203-264 20-72 (260)
289 1kag_A SKI, shikimate kinase I 68.3 3 0.0001 33.3 2.8 16 204-219 4-19 (173)
290 2c9o_A RUVB-like 1; hexameric 68.2 7.2 0.00025 36.9 5.9 19 203-221 62-80 (456)
291 1ojl_A Transcriptional regulat 68.2 3.6 0.00012 36.8 3.6 19 202-220 23-41 (304)
292 3foz_A TRNA delta(2)-isopenten 67.9 2.5 8.6E-05 38.3 2.4 14 207-220 13-26 (316)
293 3fmp_B ATP-dependent RNA helic 67.8 1.1 3.7E-05 42.7 0.0 70 240-319 333-406 (479)
294 3exa_A TRNA delta(2)-isopenten 67.8 2.4 8.1E-05 38.6 2.2 16 206-221 5-20 (322)
295 1tf5_A Preprotein translocase 67.5 12 0.00041 38.5 7.6 54 240-297 432-487 (844)
296 3b9p_A CG5977-PA, isoform A; A 67.1 2.6 8.8E-05 37.1 2.4 53 165-220 16-70 (297)
297 3nzo_A UDP-N-acetylglucosamine 67.1 46 0.0016 30.5 11.1 88 196-296 27-118 (399)
298 2qmh_A HPR kinase/phosphorylas 67.0 2.6 8.8E-05 35.7 2.1 18 202-219 32-49 (205)
299 4a2p_A RIG-I, retinoic acid in 66.9 14 0.00046 35.3 7.7 76 239-320 389-477 (556)
300 1kht_A Adenylate kinase; phosp 66.8 2.9 9.9E-05 33.8 2.4 17 203-219 2-18 (192)
301 3oiy_A Reverse gyrase helicase 66.7 10 0.00034 34.9 6.5 70 240-321 252-327 (414)
302 3b9q_A Chloroplast SRP recepto 66.6 5.6 0.00019 35.6 4.5 18 203-220 99-116 (302)
303 2r62_A Cell division protease 66.6 3.2 0.00011 35.9 2.9 17 204-220 44-60 (268)
304 3t15_A Ribulose bisphosphate c 66.5 2.3 8E-05 37.8 1.9 16 204-219 36-51 (293)
305 3lw7_A Adenylate kinase relate 66.4 2.8 9.6E-05 33.1 2.3 13 207-219 4-16 (179)
306 4b4t_K 26S protease regulatory 66.1 2.3 7.7E-05 40.4 1.8 53 165-220 167-222 (428)
307 1z6g_A Guanylate kinase; struc 65.9 3.4 0.00012 34.9 2.8 18 202-219 21-38 (218)
308 3a00_A Guanylate kinase, GMP k 65.8 3.3 0.00011 33.8 2.6 15 205-219 2-16 (186)
309 2pt7_A CAG-ALFA; ATPase, prote 65.7 2.8 9.7E-05 38.1 2.4 18 202-219 169-186 (330)
310 3dmq_A RNA polymerase-associat 65.5 15 0.0005 38.5 8.1 76 239-323 502-583 (968)
311 2ze6_A Isopentenyl transferase 65.5 2.9 9.8E-05 36.3 2.3 14 207-220 4-17 (253)
312 1y63_A LMAJ004144AAA protein; 65.5 3.3 0.00011 33.8 2.6 18 203-220 9-26 (184)
313 1jr3_A DNA polymerase III subu 65.4 23 0.00079 31.7 8.6 15 206-220 40-54 (373)
314 1s96_A Guanylate kinase, GMP k 65.4 3.2 0.00011 35.3 2.6 20 200-219 12-31 (219)
315 4a2q_A RIG-I, retinoic acid in 64.8 15 0.00052 37.3 7.9 76 239-320 630-718 (797)
316 1c9k_A COBU, adenosylcobinamid 64.7 4.1 0.00014 33.7 2.9 33 207-251 2-34 (180)
317 3cm0_A Adenylate kinase; ATP-b 64.5 2.4 8.3E-05 34.3 1.5 18 203-220 3-20 (186)
318 1f2t_A RAD50 ABC-ATPase; DNA d 64.4 5.2 0.00018 31.6 3.5 14 207-220 26-39 (149)
319 3c8u_A Fructokinase; YP_612366 64.0 4.4 0.00015 33.7 3.1 17 203-219 21-37 (208)
320 2z83_A Helicase/nucleoside tri 63.9 5.2 0.00018 37.9 4.0 53 240-297 190-243 (459)
321 4h1g_A Maltose binding protein 63.7 3.9 0.00013 41.3 3.2 24 197-220 454-479 (715)
322 3kta_A Chromosome segregation 63.6 4.6 0.00016 32.5 3.1 15 206-220 28-42 (182)
323 1np6_A Molybdopterin-guanine d 63.2 9.6 0.00033 31.1 5.0 14 206-219 8-21 (174)
324 4eun_A Thermoresistant glucoki 63.1 3.8 0.00013 33.8 2.6 18 203-220 28-45 (200)
325 4gp7_A Metallophosphoesterase; 63.1 3.2 0.00011 33.5 2.0 19 203-221 8-26 (171)
326 1znw_A Guanylate kinase, GMP k 62.8 4 0.00014 34.0 2.6 20 200-219 16-35 (207)
327 3fho_A ATP-dependent RNA helic 62.5 1.4 4.9E-05 42.4 -0.3 71 240-320 357-431 (508)
328 1zu4_A FTSY; GTPase, signal re 62.4 7.3 0.00025 35.2 4.5 18 203-220 104-121 (320)
329 2yvu_A Probable adenylyl-sulfa 62.1 8.3 0.00028 31.1 4.4 18 203-220 12-29 (186)
330 2v54_A DTMP kinase, thymidylat 62.0 3.9 0.00013 33.5 2.4 17 203-219 3-19 (204)
331 1ry6_A Internal kinesin; kines 61.9 4.1 0.00014 37.7 2.7 19 203-221 82-102 (360)
332 1knq_A Gluconate kinase; ALFA/ 61.9 3.5 0.00012 33.0 2.0 18 203-220 7-24 (175)
333 2og2_A Putative signal recogni 61.8 7.5 0.00026 35.8 4.5 18 203-220 156-173 (359)
334 3ice_A Transcription terminati 61.8 39 0.0013 31.6 9.3 20 202-221 172-191 (422)
335 3e70_C DPA, signal recognition 61.7 7.5 0.00026 35.3 4.4 17 203-219 128-144 (328)
336 2r8r_A Sensor protein; KDPD, P 61.4 10 0.00035 32.6 4.9 20 203-222 4-24 (228)
337 1m7g_A Adenylylsulfate kinase; 61.3 6.2 0.00021 32.8 3.6 30 190-220 12-41 (211)
338 1ly1_A Polynucleotide kinase; 61.1 4 0.00014 32.5 2.3 15 206-220 4-18 (181)
339 2v9p_A Replication protein E1; 61.0 6.1 0.00021 35.5 3.6 16 203-218 125-140 (305)
340 3mwy_W Chromo domain-containin 60.8 49 0.0017 33.6 10.8 89 214-320 554-649 (800)
341 2yhs_A FTSY, cell division pro 60.5 7.7 0.00026 37.4 4.4 35 204-246 293-327 (503)
342 1ye8_A Protein THEP1, hypothet 60.4 6.6 0.00022 32.1 3.5 14 206-219 2-15 (178)
343 2ius_A DNA translocase FTSK; n 60.3 12 0.0004 36.3 5.7 18 203-220 166-183 (512)
344 3kb2_A SPBC2 prophage-derived 60.2 4.3 0.00015 32.1 2.2 15 206-220 3-17 (173)
345 3crm_A TRNA delta(2)-isopenten 59.9 5.2 0.00018 36.4 3.0 15 206-220 7-21 (323)
346 2cvh_A DNA repair and recombin 59.7 6.1 0.00021 32.7 3.2 20 201-220 17-36 (220)
347 2qt1_A Nicotinamide riboside k 59.4 3.8 0.00013 33.9 1.9 23 198-220 15-37 (207)
348 1um8_A ATP-dependent CLP prote 59.3 6.2 0.00021 36.1 3.5 18 203-220 71-88 (376)
349 1sxj_D Activator 1 41 kDa subu 59.1 7.9 0.00027 34.6 4.1 16 205-220 59-74 (353)
350 1g5t_A COB(I)alamin adenosyltr 59.1 12 0.00042 31.3 4.9 34 205-246 29-62 (196)
351 1nij_A Hypothetical protein YJ 59.0 8.6 0.00029 34.5 4.3 13 207-219 7-19 (318)
352 2i3b_A HCR-ntpase, human cance 58.9 8.3 0.00028 31.9 3.9 17 204-220 1-17 (189)
353 1fuu_A Yeast initiation factor 58.8 2 6.9E-05 39.1 0.0 56 239-298 258-317 (394)
354 3nwj_A ATSK2; P loop, shikimat 58.3 7.2 0.00024 33.9 3.5 19 202-220 46-64 (250)
355 2plr_A DTMP kinase, probable t 58.3 4.4 0.00015 33.3 2.1 17 203-219 3-19 (213)
356 2iut_A DNA translocase FTSK; n 58.1 13 0.00046 36.4 5.7 26 204-230 214-239 (574)
357 3tqc_A Pantothenate kinase; bi 58.0 12 0.00042 33.8 5.1 23 207-231 95-117 (321)
358 3d3q_A TRNA delta(2)-isopenten 57.9 5.9 0.0002 36.3 3.0 15 206-220 9-23 (340)
359 2qp9_X Vacuolar protein sortin 57.7 6.7 0.00023 35.8 3.4 17 204-220 84-100 (355)
360 1tev_A UMP-CMP kinase; ploop, 57.6 4.4 0.00015 32.7 1.9 17 204-220 3-19 (196)
361 4akg_A Glutathione S-transfera 57.5 11 0.00037 44.0 5.6 48 174-222 890-941 (2695)
362 2r2a_A Uncharacterized protein 57.4 7.3 0.00025 32.6 3.3 15 207-221 8-22 (199)
363 2c95_A Adenylate kinase 1; tra 57.4 5.4 0.00019 32.3 2.5 19 202-220 7-25 (196)
364 2zj8_A DNA helicase, putative 57.3 14 0.00048 37.0 6.0 74 240-319 237-343 (720)
365 3eph_A TRNA isopentenyltransfe 57.1 4.8 0.00016 37.8 2.3 14 207-220 5-18 (409)
366 2bdt_A BH3686; alpha-beta prot 57.1 5.2 0.00018 32.5 2.3 16 205-220 3-18 (189)
367 3lnc_A Guanylate kinase, GMP k 57.0 3.6 0.00012 34.8 1.4 19 201-219 24-42 (231)
368 4fcw_A Chaperone protein CLPB; 57.0 4.8 0.00016 35.4 2.2 16 205-220 48-63 (311)
369 3pxg_A Negative regulator of g 56.9 13 0.00045 35.3 5.4 18 203-220 200-217 (468)
370 2rhm_A Putative kinase; P-loop 56.9 4.6 0.00016 32.7 1.9 17 204-220 5-21 (193)
371 1tf7_A KAIC; homohexamer, hexa 56.8 16 0.00055 35.2 6.1 54 200-262 277-330 (525)
372 3qks_A DNA double-strand break 56.1 8.3 0.00028 32.1 3.5 15 206-220 25-39 (203)
373 3h1t_A Type I site-specific re 56.1 41 0.0014 32.5 9.0 78 239-322 438-525 (590)
374 3bos_A Putative DNA replicatio 56.0 9.9 0.00034 31.6 4.0 15 313-327 103-117 (242)
375 3t61_A Gluconokinase; PSI-biol 55.9 5.5 0.00019 32.8 2.3 16 205-220 19-34 (202)
376 1rz3_A Hypothetical protein rb 55.7 13 0.00043 30.7 4.5 17 204-220 22-38 (201)
377 3cmw_A Protein RECA, recombina 55.7 11 0.00038 41.8 5.2 28 203-231 382-409 (1706)
378 3qf7_A RAD50; ABC-ATPase, ATPa 55.5 5.3 0.00018 36.8 2.3 16 206-221 25-40 (365)
379 1in4_A RUVB, holliday junction 55.4 8.7 0.0003 34.6 3.7 16 205-220 52-67 (334)
380 3cf2_A TER ATPase, transitiona 55.1 14 0.00047 37.9 5.5 56 164-220 471-527 (806)
381 3tif_A Uncharacterized ABC tra 55.1 6.1 0.00021 33.9 2.5 17 203-219 30-46 (235)
382 2fsf_A Preprotein translocase 55.1 29 0.001 35.6 7.8 55 240-298 441-497 (853)
383 4b4t_I 26S protease regulatory 55.1 5 0.00017 38.0 2.0 54 164-220 176-232 (437)
384 4a2w_A RIG-I, retinoic acid in 54.7 27 0.00091 36.3 7.7 77 239-321 630-719 (936)
385 3asz_A Uridine kinase; cytidin 54.7 8.4 0.00029 31.8 3.3 16 204-219 6-21 (211)
386 3p32_A Probable GTPase RV1496/ 54.4 17 0.00057 33.1 5.5 16 205-220 80-95 (355)
387 2w00_A HSDR, R.ECOR124I; ATP-b 53.4 40 0.0014 35.6 8.8 39 239-277 536-582 (1038)
388 1ls1_A Signal recognition part 53.3 13 0.00045 33.0 4.5 18 203-220 97-114 (295)
389 3uie_A Adenylyl-sulfate kinase 53.0 7.8 0.00027 31.9 2.8 19 202-220 23-41 (200)
390 3f9v_A Minichromosome maintena 52.8 9.2 0.00032 37.7 3.7 14 206-219 329-342 (595)
391 1gvn_B Zeta; postsegregational 52.7 6 0.00021 35.0 2.1 17 204-220 33-49 (287)
392 1g8p_A Magnesium-chelatase 38 52.7 4 0.00014 36.6 1.0 17 204-220 45-61 (350)
393 2cdn_A Adenylate kinase; phosp 52.6 7.3 0.00025 31.9 2.5 18 203-220 19-36 (201)
394 4fn4_A Short chain dehydrogena 52.5 88 0.003 26.9 9.7 81 202-299 5-93 (254)
395 2pez_A Bifunctional 3'-phospho 52.5 6.3 0.00022 31.7 2.1 18 203-220 4-21 (179)
396 1z63_A Helicase of the SNF2/RA 52.4 36 0.0012 32.0 7.8 74 239-321 340-419 (500)
397 1nkt_A Preprotein translocase 52.3 49 0.0017 34.2 8.9 54 240-297 460-515 (922)
398 1htw_A HI0065; nucleotide-bind 52.3 9.3 0.00032 30.6 3.0 17 202-218 31-47 (158)
399 3fkq_A NTRC-like two-domain pr 51.5 32 0.0011 31.4 7.0 15 207-221 146-161 (373)
400 2wwf_A Thymidilate kinase, put 51.5 7.2 0.00024 32.1 2.3 19 202-220 8-26 (212)
401 2f1r_A Molybdopterin-guanine d 51.3 7.1 0.00024 31.8 2.2 14 207-220 5-18 (171)
402 1via_A Shikimate kinase; struc 51.2 8.1 0.00028 30.9 2.5 15 206-220 6-20 (175)
403 2cbz_A Multidrug resistance-as 51.0 7.7 0.00026 33.3 2.5 17 203-219 30-46 (237)
404 1zd8_A GTP:AMP phosphotransfer 50.8 7.5 0.00026 32.7 2.3 17 204-220 7-23 (227)
405 1zuh_A Shikimate kinase; alpha 50.7 7.7 0.00026 30.7 2.3 16 205-220 8-23 (168)
406 3auy_A DNA double-strand break 50.6 10 0.00034 34.8 3.3 15 206-220 27-41 (371)
407 1iqp_A RFCS; clamp loader, ext 50.6 7.7 0.00026 34.2 2.5 15 206-220 48-62 (327)
408 1yrb_A ATP(GTP)binding protein 50.5 17 0.00058 30.9 4.7 14 206-219 16-29 (262)
409 4e22_A Cytidylate kinase; P-lo 50.5 10 0.00036 32.6 3.3 18 203-220 26-43 (252)
410 1ak2_A Adenylate kinase isoenz 50.4 9.5 0.00033 32.2 3.0 18 203-220 15-32 (233)
411 2iyv_A Shikimate kinase, SK; t 50.2 9.1 0.00031 30.7 2.7 16 205-220 3-18 (184)
412 2zan_A Vacuolar protein sortin 50.2 9.3 0.00032 36.1 3.1 53 165-220 129-183 (444)
413 1aky_A Adenylate kinase; ATP:A 50.0 8.6 0.00029 32.1 2.6 17 204-220 4-20 (220)
414 1sgw_A Putative ABC transporte 49.9 8.9 0.0003 32.4 2.7 17 203-219 34-50 (214)
415 3fb4_A Adenylate kinase; psych 49.7 7.9 0.00027 32.0 2.3 14 207-220 3-16 (216)
416 1nn5_A Similar to deoxythymidy 49.6 8.6 0.00029 31.6 2.5 18 203-220 8-25 (215)
417 3qiv_A Short-chain dehydrogena 49.3 1E+02 0.0035 25.7 9.6 80 202-298 7-94 (253)
418 3k1j_A LON protease, ATP-depen 49.2 12 0.00043 36.7 4.0 22 199-220 55-76 (604)
419 1j8m_F SRP54, signal recogniti 49.2 15 0.00052 32.7 4.2 17 204-220 98-114 (297)
420 1cke_A CK, MSSA, protein (cyti 49.1 8.1 0.00028 32.2 2.3 15 205-219 6-20 (227)
421 2bwj_A Adenylate kinase 5; pho 49.1 6.8 0.00023 31.8 1.8 17 204-220 12-28 (199)
422 1r6b_X CLPA protein; AAA+, N-t 49.1 37 0.0013 34.1 7.6 18 203-220 206-223 (758)
423 1nks_A Adenylate kinase; therm 49.1 7.8 0.00027 31.1 2.1 13 207-219 4-16 (194)
424 1zak_A Adenylate kinase; ATP:A 49.0 9.3 0.00032 31.9 2.6 17 204-220 5-21 (222)
425 1qf9_A UMP/CMP kinase, protein 48.6 8.2 0.00028 31.0 2.2 15 206-220 8-22 (194)
426 2ff7_A Alpha-hemolysin translo 48.5 8.8 0.0003 33.1 2.5 17 203-219 34-50 (247)
427 3lda_A DNA repair protein RAD5 48.5 19 0.00066 33.5 5.0 17 203-219 177-193 (400)
428 2pze_A Cystic fibrosis transme 48.4 8.9 0.0003 32.7 2.4 17 203-219 33-49 (229)
429 2if2_A Dephospho-COA kinase; a 48.4 8.1 0.00028 31.7 2.1 15 206-220 3-17 (204)
430 1e6c_A Shikimate kinase; phosp 48.4 9.6 0.00033 30.1 2.5 16 205-220 3-18 (173)
431 2ghi_A Transport protein; mult 48.2 9 0.00031 33.4 2.5 17 203-219 45-61 (260)
432 3dl0_A Adenylate kinase; phosp 48.0 8.7 0.0003 31.8 2.3 15 206-220 2-16 (216)
433 1sxj_A Activator 1 95 kDa subu 47.9 10 0.00036 36.4 3.1 17 204-220 77-93 (516)
434 3gfo_A Cobalt import ATP-bindi 47.8 8.9 0.0003 33.8 2.4 17 203-219 33-49 (275)
435 3cmu_A Protein RECA, recombina 47.8 18 0.0006 41.0 5.1 39 201-247 1078-1116(2050)
436 1jjv_A Dephospho-COA kinase; P 47.7 8.9 0.0003 31.5 2.3 14 207-220 5-18 (206)
437 3hu3_A Transitional endoplasmi 47.4 8.8 0.0003 36.9 2.5 18 203-220 237-254 (489)
438 3pvs_A Replication-associated 47.4 11 0.00036 35.8 3.0 16 205-220 51-66 (447)
439 4g1u_C Hemin import ATP-bindin 47.3 9.2 0.00032 33.5 2.4 17 203-219 36-52 (266)
440 3czc_A RMPB; alpha/beta sandwi 47.3 27 0.00093 25.9 4.8 57 240-299 18-76 (110)
441 2bbw_A Adenylate kinase 4, AK4 47.1 9 0.00031 32.7 2.3 16 204-219 27-42 (246)
442 1g41_A Heat shock protein HSLU 47.1 10 0.00035 36.0 2.8 18 203-220 49-66 (444)
443 1gku_B Reverse gyrase, TOP-RG; 47.0 26 0.00089 37.0 6.2 72 240-324 275-352 (1054)
444 1ukz_A Uridylate kinase; trans 46.7 9.5 0.00032 31.2 2.3 15 206-220 17-31 (203)
445 2v3c_C SRP54, signal recogniti 46.7 17 0.0006 34.2 4.4 16 205-220 100-115 (432)
446 1g6h_A High-affinity branched- 46.6 9.8 0.00033 33.0 2.5 17 203-219 32-48 (257)
447 1ji0_A ABC transporter; ATP bi 46.6 9.9 0.00034 32.6 2.5 17 203-219 31-47 (240)
448 2pcj_A ABC transporter, lipopr 46.6 9.4 0.00032 32.4 2.3 17 203-219 29-45 (224)
449 3tnl_A Shikimate dehydrogenase 46.5 54 0.0018 29.4 7.5 83 202-302 152-239 (315)
450 2gn4_A FLAA1 protein, UDP-GLCN 46.3 70 0.0024 28.5 8.4 80 200-297 17-98 (344)
451 1b0u_A Histidine permease; ABC 45.8 10 0.00035 33.0 2.5 17 203-219 31-47 (262)
452 1mv5_A LMRA, multidrug resista 45.6 8.7 0.0003 33.0 1.9 17 203-219 27-43 (243)
453 1odf_A YGR205W, hypothetical 3 45.4 15 0.00051 32.6 3.5 14 207-220 34-47 (290)
454 2pt5_A Shikimate kinase, SK; a 45.3 10 0.00036 29.8 2.3 15 206-220 2-16 (168)
455 2jaq_A Deoxyguanosine kinase; 45.2 10 0.00035 30.8 2.3 13 207-219 3-15 (205)
456 3l9o_A ATP-dependent RNA helic 45.1 37 0.0013 36.0 7.1 75 239-319 440-553 (1108)
457 3jyo_A Quinate/shikimate dehyd 45.1 38 0.0013 29.8 6.1 81 202-302 125-207 (283)
458 2yz2_A Putative ABC transporte 45.0 11 0.00037 33.0 2.5 17 203-219 32-48 (266)
459 2qi9_C Vitamin B12 import ATP- 45.0 11 0.00037 32.7 2.4 17 203-219 25-41 (249)
460 3a4m_A L-seryl-tRNA(SEC) kinas 45.0 10 0.00034 32.8 2.3 16 205-220 5-20 (260)
461 2vli_A Antibiotic resistance p 45.0 8.2 0.00028 30.9 1.6 17 204-220 5-21 (183)
462 3sju_A Keto reductase; short-c 44.9 1.2E+02 0.0042 25.9 9.5 83 199-298 19-109 (279)
463 3tfo_A Putative 3-oxoacyl-(acy 44.9 1E+02 0.0035 26.3 8.9 80 202-298 2-89 (264)
464 2ixe_A Antigen peptide transpo 44.6 11 0.00038 33.0 2.5 17 203-219 44-60 (271)
465 3nh6_A ATP-binding cassette SU 44.5 10 0.00035 34.0 2.3 17 203-219 79-95 (306)
466 1vpl_A ABC transporter, ATP-bi 44.5 11 0.00038 32.8 2.5 17 203-219 40-56 (256)
467 3sfz_A APAF-1, apoptotic pepti 44.3 20 0.00067 37.9 4.8 32 269-300 236-267 (1249)
468 2nq2_C Hypothetical ABC transp 44.2 11 0.00037 32.7 2.4 17 203-219 30-46 (253)
469 3vkg_A Dynein heavy chain, cyt 44.2 37 0.0013 40.3 7.2 55 174-231 873-931 (3245)
470 2pbr_A DTMP kinase, thymidylat 44.1 11 0.00038 30.3 2.3 14 207-220 3-16 (195)
471 2ce7_A Cell division protein F 44.1 10 0.00034 36.4 2.3 16 205-220 50-65 (476)
472 3aez_A Pantothenate kinase; tr 44.1 15 0.0005 33.0 3.3 17 203-219 89-105 (312)
473 1ypw_A Transitional endoplasmi 43.9 10 0.00035 38.9 2.4 17 203-219 510-526 (806)
474 4akg_A Glutathione S-transfera 43.7 8.5 0.00029 44.8 2.0 19 202-220 1265-1283(2695)
475 2olj_A Amino acid ABC transpor 43.6 12 0.0004 32.8 2.5 17 203-219 49-65 (263)
476 2d2e_A SUFC protein; ABC-ATPas 43.6 15 0.00051 31.7 3.1 17 203-219 28-44 (250)
477 1byi_A Dethiobiotin synthase; 43.4 28 0.00096 28.7 4.8 30 211-248 9-38 (224)
478 2ihy_A ABC transporter, ATP-bi 43.4 12 0.0004 33.1 2.4 17 203-219 46-62 (279)
479 3pxi_A Negative regulator of g 43.3 22 0.00075 35.9 4.8 18 203-220 200-217 (758)
480 3zq6_A Putative arsenical pump 43.1 27 0.00092 31.2 4.9 16 207-222 17-32 (324)
481 2zu0_C Probable ATP-dependent 43.0 15 0.00052 32.0 3.1 17 203-219 45-61 (267)
482 3qkt_A DNA double-strand break 42.9 11 0.00038 34.1 2.3 15 207-221 26-40 (339)
483 4ddu_A Reverse gyrase; topoiso 42.9 44 0.0015 35.5 7.2 71 240-323 309-386 (1104)
484 3be4_A Adenylate kinase; malar 42.8 12 0.0004 31.3 2.3 17 204-220 5-21 (217)
485 4e3z_A Putative oxidoreductase 42.4 1.2E+02 0.0039 25.8 8.9 80 201-297 23-111 (272)
486 1tf7_A KAIC; homohexamer, hexa 42.3 18 0.00062 34.8 3.8 31 200-230 35-65 (525)
487 1uf9_A TT1252 protein; P-loop, 42.3 12 0.00039 30.5 2.1 15 206-220 10-24 (203)
488 2z0h_A DTMP kinase, thymidylat 42.2 12 0.00042 30.1 2.3 14 207-220 3-16 (197)
489 2qen_A Walker-type ATPase; unk 42.2 17 0.00059 32.0 3.5 16 204-219 31-46 (350)
490 2p5t_B PEZT; postsegregational 42.1 8 0.00028 33.3 1.2 18 203-220 31-48 (253)
491 2p67_A LAO/AO transport system 42.1 38 0.0013 30.5 5.8 18 202-219 54-71 (341)
492 3tlx_A Adenylate kinase 2; str 41.9 16 0.00054 31.2 3.0 18 203-220 28-45 (243)
493 1sxj_B Activator 1 37 kDa subu 41.4 24 0.00083 30.7 4.3 15 206-220 44-58 (323)
494 1e4v_A Adenylate kinase; trans 41.3 12 0.00042 31.0 2.2 15 206-220 2-16 (214)
495 2fna_A Conserved hypothetical 41.3 50 0.0017 29.0 6.5 15 205-219 31-45 (357)
496 2woo_A ATPase GET3; tail-ancho 41.3 27 0.00094 31.3 4.7 16 207-222 22-37 (329)
497 1vht_A Dephospho-COA kinase; s 40.7 13 0.00045 30.8 2.3 15 206-220 6-20 (218)
498 1ek0_A Protein (GTP-binding pr 40.6 19 0.00066 27.7 3.2 14 206-219 5-18 (170)
499 4edh_A DTMP kinase, thymidylat 40.5 31 0.0011 28.8 4.7 19 202-220 4-22 (213)
500 1ihu_A Arsenical pump-driving 40.5 29 0.00099 33.8 5.0 19 205-223 9-27 (589)
No 1
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=4e-38 Score=282.20 Aligned_cols=190 Identities=49% Similarity=0.768 Sum_probs=176.1
Q ss_pred cCHHHHHHHHHHcCcEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 141 LTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 141 ~~~~~~~~~r~~~~i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
++.+++..+|...++.+.|...|.|+.+|.+++|++.+++++.+.||..|+|+|.++|+.+++|+|++++++||||||++
T Consensus 3 ~~~~~~~~~~~~~~i~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~ 82 (242)
T 3fe2_A 3 RTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLS 82 (242)
T ss_dssp ---CHHHHHHHHHTEEEESSCCCCCCSSTTTTTCCHHHHHHHHTTTCCSCCHHHHHHHHHHHHTCCEEEEECTTSCHHHH
T ss_pred CCHHHHHHHHhcCceEEeCCCCCCccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCcCHHHHH
Confidence 45667889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHH
Q psy17644 221 FIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGR 300 (330)
Q Consensus 221 ~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~ 300 (330)
|++|++.++...+......++++|||+|||+||.|+++.+++++...++++.+++||.....+...+..+++|+|+||++
T Consensus 83 ~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~ 162 (242)
T 3fe2_A 83 YLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGR 162 (242)
T ss_dssp HHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHH
T ss_pred HHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHH
Confidence 99999999987654444568999999999999999999999999888999999999999988888888889999999999
Q ss_pred HHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 301 IIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 301 L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
|.+++.++...++++.+|||||||+|+++|
T Consensus 163 l~~~l~~~~~~~~~~~~lViDEah~l~~~~ 192 (242)
T 3fe2_A 163 LIDFLECGKTNLRRTTYLVLDEADRMLDMG 192 (242)
T ss_dssp HHHHHHHTSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHHHcCCCCcccccEEEEeCHHHHhhhC
Confidence 999999888889999999999999999876
No 2
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6e-37 Score=297.33 Aligned_cols=178 Identities=38% Similarity=0.677 Sum_probs=166.8
Q ss_pred cCcEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhc
Q psy17644 153 SGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQ 232 (330)
Q Consensus 153 ~~i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~ 232 (330)
..+.+.|.++|.|+.+|.+++|++.+++++.++||..|||+|+++||.+++|+|++++|+||||||++|++|++.+++..
T Consensus 42 ~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~~~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~ 121 (434)
T 2db3_A 42 IPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLED 121 (434)
T ss_dssp SCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHS
T ss_pred ceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhc
Confidence 35778999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred CCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCC
Q psy17644 233 KELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKL 312 (330)
Q Consensus 233 ~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l 312 (330)
.......++++|||+|||+||.|+++.+++++...++++.+++||.....+...+..+++|+|+||++|.+++.++...+
T Consensus 122 ~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l 201 (434)
T 2db3_A 122 PHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITF 201 (434)
T ss_dssp CCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCC
T ss_pred ccccccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCccc
Confidence 54334568999999999999999999999999888899999999999988888888899999999999999999888889
Q ss_pred CCccEEEeecccccCcCC
Q psy17644 313 NRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 313 ~~i~~lVvDEad~lld~G 330 (330)
+++++|||||||+|++||
T Consensus 202 ~~~~~lVlDEah~~~~~g 219 (434)
T 2db3_A 202 EDTRFVVLDEADRMLDMG 219 (434)
T ss_dssp TTCCEEEEETHHHHTSTT
T ss_pred ccCCeEEEccHhhhhccC
Confidence 999999999999999987
No 3
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=3.2e-34 Score=258.20 Aligned_cols=178 Identities=38% Similarity=0.656 Sum_probs=160.4
Q ss_pred cCcEeeCCCCCC--CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 153 SGITVSGADPPY--PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 153 ~~i~~~g~~~p~--p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
+.+.+.|...|. ++.+|.+++|++.++++|.+.||..|+|+|.++++.+++|+|++++++||||||++|++|++.++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~ 86 (253)
T 1wrb_A 7 IPVSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLV 86 (253)
T ss_dssp CCCCEECCSSSCCSCCCSSGGGSCCCSTTTTTTTTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CceeeeCCCCCCCCccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHH
Confidence 346677888877 899999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCCC----CCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHH
Q psy17644 231 DQKEL----EPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVK 306 (330)
Q Consensus 231 ~~~~~----~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~ 306 (330)
..... ....++++|||+|||+||.|+++.+++++...++++..++||.....+...+..+++|+|+||++|..++.
T Consensus 87 ~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~ 166 (253)
T 1wrb_A 87 CQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIE 166 (253)
T ss_dssp TTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHH
T ss_pred hhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHH
Confidence 64321 12346899999999999999999999999888899999999998888888888889999999999999999
Q ss_pred cCCCCCCCccEEEeecccccCcCC
Q psy17644 307 MGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 307 ~~~~~l~~i~~lVvDEad~lld~G 330 (330)
+....++++.+|||||||+|+++|
T Consensus 167 ~~~~~~~~~~~lViDEah~~~~~~ 190 (253)
T 1wrb_A 167 KNKISLEFCKYIVLDEADRMLDMG 190 (253)
T ss_dssp TTSBCCTTCCEEEEETHHHHHHTT
T ss_pred cCCCChhhCCEEEEeCHHHHHhCc
Confidence 888889999999999999998875
No 4
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.8e-34 Score=256.39 Aligned_cols=181 Identities=33% Similarity=0.546 Sum_probs=157.6
Q ss_pred HHHHHHHHcCcEeeCCCCCCCCCCCCCC----CCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 145 EAQELRAKSGITVSGADPPYPVSSFGHF----GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 145 ~~~~~r~~~~i~~~g~~~p~p~~~f~~~----~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
++..+|.++++.+.|..+|.|+.+|.++ ++++.+++++.+.||..|+|+|.++++.+++|++++++++||||||++
T Consensus 3 ~~~~~~~~~~i~~~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 3 KINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIPVMLHGRELLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHHTTEEEESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHH
T ss_pred hHHHHHHhCceEecCCCCCCcccCHHHhhhccCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHH
Confidence 4677899999999999999999999987 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH-HHHHhCCCeEEEEChH
Q psy17644 221 FIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ-SKALELGAEIVVGTPG 299 (330)
Q Consensus 221 ~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~-~~~l~~~~dIiV~TP~ 299 (330)
|++|++.++.... ..++++|||+|||+||.|+++.+++++...+.++..+.|+...... ......+++|+|+||+
T Consensus 83 ~~l~~l~~l~~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~ 158 (245)
T 3dkp_A 83 FSIPILMQLKQPA----NKGFRALIISPTRELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPN 158 (245)
T ss_dssp HHHHHHHHHCSCC----SSSCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHH
T ss_pred HHHHHHHHHhhcc----cCCceEEEEeCCHHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHH
Confidence 9999999885422 2578999999999999999999999998888888877765433222 1222446899999999
Q ss_pred HHHHHHHcC--CCCCCCccEEEeecccccCcC
Q psy17644 300 RIIDMVKMG--ATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 300 ~L~~~l~~~--~~~l~~i~~lVvDEad~lld~ 329 (330)
+|..++.+. ...++++.+|||||||+|+++
T Consensus 159 ~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~ 190 (245)
T 3dkp_A 159 RLIYLLKQDPPGIDLASVEWLVVDESDKLFED 190 (245)
T ss_dssp HHHHHHHSSSCSCCCTTCCEEEESSHHHHHHH
T ss_pred HHHHHHHhCCCCcccccCcEEEEeChHHhccc
Confidence 999999876 467899999999999999874
No 5
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=250.19 Aligned_cols=171 Identities=37% Similarity=0.611 Sum_probs=146.7
Q ss_pred CCCCCCCCCCCCC-CCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCC-CC
Q psy17644 159 GADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKE-LE 236 (330)
Q Consensus 159 g~~~p~p~~~f~~-~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~-~~ 236 (330)
+...|.|+.+|.+ +++++.+++++.+.||..|||+|.++++.+++|+|++++++||||||++|++|++.++..... ..
T Consensus 11 ~~~~p~p~~~f~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~ 90 (228)
T 3iuy_A 11 KRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISRE 90 (228)
T ss_dssp CCCCCCCCCSHHHHHTTCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC-------
T ss_pred cCcCCCChhhHhhhhccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhh
Confidence 4567999999999 899999999999999999999999999999999999999999999999999999998865421 11
Q ss_pred CCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCcc
Q psy17644 237 PGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVT 316 (330)
Q Consensus 237 ~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~ 316 (330)
...++++|||+|||+||.|+++.+++++ ..++++..++||.....+...+..+++|+|+||++|..++.+....++++.
T Consensus 91 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~ 169 (228)
T 3iuy_A 91 QRNGPGMLVLTPTRELALHVEAECSKYS-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSIT 169 (228)
T ss_dssp --CCCSEEEECSSHHHHHHHHHHHHHHC-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCC
T ss_pred ccCCCcEEEEeCCHHHHHHHHHHHHHhc-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccce
Confidence 2367899999999999999999999986 457888999999988888888888999999999999999998888899999
Q ss_pred EEEeecccccCcCC
Q psy17644 317 FLVLDEADRMFDMG 330 (330)
Q Consensus 317 ~lVvDEad~lld~G 330 (330)
+|||||||+|+++|
T Consensus 170 ~lViDEah~~~~~~ 183 (228)
T 3iuy_A 170 YLVIDEADKMLDME 183 (228)
T ss_dssp EEEECCHHHHHHTT
T ss_pred EEEEECHHHHhccc
Confidence 99999999998875
No 6
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.6e-32 Score=263.11 Aligned_cols=176 Identities=40% Similarity=0.697 Sum_probs=160.7
Q ss_pred cEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCC
Q psy17644 155 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKE 234 (330)
Q Consensus 155 i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~ 234 (330)
+.+.|..+|.++.+|.+++|++.++++|...||..|||+|.++||.++.|+|++++++||||||++|++|++.++.....
T Consensus 3 ~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~ 82 (417)
T 2i4i_A 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTGSGKTAAFLLPILSQIYSDGP 82 (417)
T ss_dssp EEEESTTCCCCCSSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCcCCcccCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999876432
Q ss_pred C-------------CCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH
Q psy17644 235 L-------------EPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI 301 (330)
Q Consensus 235 ~-------------~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L 301 (330)
. ....++++|||+|||+||.|+++.+++++...++++..++||.....+...+..+++|+|+||++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l 162 (417)
T 2i4i_A 83 GEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRL 162 (417)
T ss_dssp CHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHH
T ss_pred cchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHH
Confidence 1 122458999999999999999999999998889999999999998888888888899999999999
Q ss_pred HHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 302 IDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 302 ~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
..++......++++.+|||||||+|+++|
T Consensus 163 ~~~l~~~~~~~~~~~~iViDEah~~~~~~ 191 (417)
T 2i4i_A 163 VDMMERGKIGLDFCKYLVLDEADRMLDMG 191 (417)
T ss_dssp HHHHHTTSBCCTTCCEEEESSHHHHHHTT
T ss_pred HHHHHcCCcChhhCcEEEEEChhHhhccC
Confidence 99999888889999999999999998765
No 7
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=3.9e-33 Score=258.03 Aligned_cols=166 Identities=30% Similarity=0.508 Sum_probs=142.9
Q ss_pred cEeeCCCCC---CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHHHHHHHHHH
Q psy17644 155 ITVSGADPP---YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 155 i~~~g~~~p---~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~llp~l~~i 229 (330)
+.+.+.+++ .++.+|.+++|++.++++|.++||..||++|.++||.++.| +|++++|+||||||++|++|++.++
T Consensus 77 v~v~~~~~~~p~~~~~~f~~l~l~~~l~~~l~~~g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l 156 (300)
T 3fmo_B 77 VEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQV 156 (300)
T ss_dssp EEEECSSTTCCCCCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceeccCCCCCCcCCcCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhh
Confidence 444444443 35788999999999999999999999999999999999987 9999999999999999999999987
Q ss_pred HhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHc-
Q psy17644 230 MDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM- 307 (330)
Q Consensus 230 ~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~- 307 (330)
... ..+|++|||+|||+||.|++..++.++... ++.+.+++||....... ..+++||||||++|.+++.+
T Consensus 157 ~~~-----~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~IlV~TP~~l~~~l~~~ 228 (300)
T 3fmo_B 157 EPA-----NKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ---KISEQIVIGTPGTVLDWCSKL 228 (300)
T ss_dssp CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC---CCCCSEEEECHHHHHHHHTTT
T ss_pred hcc-----CCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh---cCCCCEEEECHHHHHHHHHhc
Confidence 553 257899999999999999999999998764 67888888887653322 45689999999999999965
Q ss_pred CCCCCCCccEEEeecccccCc
Q psy17644 308 GATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 308 ~~~~l~~i~~lVvDEad~lld 328 (330)
+...++++.+|||||||+|++
T Consensus 229 ~~~~l~~l~~lVlDEad~l~~ 249 (300)
T 3fmo_B 229 KFIDPKKIKVFVLDEADVMIA 249 (300)
T ss_dssp CCCCGGGCSEEEETTHHHHHH
T ss_pred CCCChhhceEEEEeCHHHHhh
Confidence 566789999999999999997
No 8
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=1.7e-32 Score=243.76 Aligned_cols=166 Identities=29% Similarity=0.453 Sum_probs=143.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCC
Q psy17644 159 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPG 238 (330)
Q Consensus 159 g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~ 238 (330)
+...|.+..+|.+++|++.+++++.+.||..|+++|.++++.+++|+|++++++||+|||++|++|++.++... .
T Consensus 16 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~-----~ 90 (230)
T 2oxc_A 16 GDVLLAEPADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLE-----N 90 (230)
T ss_dssp --------CCGGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----S
T ss_pred CCCCCCCCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 45567788899999999999999999999999999999999999999999999999999999999999887543 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccE
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTF 317 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~ 317 (330)
.++++|||+|||+|+.|+++.+++++... ++++..++||.....+...+. +++|+|+||++|..++......+.++++
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~ 169 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK-KCHIAVGSPGRIKQLIELDYLNPGSIRL 169 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT-SCSEEEECHHHHHHHHHTTSSCGGGCCE
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc-CCCEEEECHHHHHHHHhcCCcccccCCE
Confidence 46899999999999999999999998765 788888999988776655554 6899999999999999888778899999
Q ss_pred EEeecccccCcCC
Q psy17644 318 LVLDEADRMFDMG 330 (330)
Q Consensus 318 lVvDEad~lld~G 330 (330)
|||||||+|+++|
T Consensus 170 lViDEah~~~~~~ 182 (230)
T 2oxc_A 170 FILDEADKLLEEG 182 (230)
T ss_dssp EEESSHHHHHSTT
T ss_pred EEeCCchHhhcCc
Confidence 9999999998876
No 9
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=9.5e-33 Score=246.58 Aligned_cols=167 Identities=31% Similarity=0.510 Sum_probs=138.6
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCC
Q psy17644 159 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPG 238 (330)
Q Consensus 159 g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~ 238 (330)
..+.|.++.+|++++|++.+++++.+.||..|+++|.++++.+++|++++++++||||||++|++|++.++... .
T Consensus 22 ~~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~-----~ 96 (237)
T 3bor_A 22 ESNWNEIVDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIE-----F 96 (237)
T ss_dssp -----CCCCSGGGSCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----S
T ss_pred cCCCCCccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhc-----C
Confidence 34567788999999999999999999999999999999999999999999999999999999999999886532 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCC-CeEEEEChHHHHHHHHcCCCCCCCccE
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELG-AEIVVGTPGRIIDMVKMGATKLNRVTF 317 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~-~dIiV~TP~~L~~~l~~~~~~l~~i~~ 317 (330)
.++++|||+|||+|+.|+++.+++++...+..+..++||.....+...+..+ ++|+|+||++|.+++.++...+.++.+
T Consensus 97 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~ 176 (237)
T 3bor_A 97 KETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKM 176 (237)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCE
T ss_pred CCceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcE
Confidence 4689999999999999999999999988888999999998877666666655 899999999999999988888899999
Q ss_pred EEeecccccCcCC
Q psy17644 318 LVLDEADRMFDMG 330 (330)
Q Consensus 318 lVvDEad~lld~G 330 (330)
|||||||+|+++|
T Consensus 177 lViDEah~~~~~~ 189 (237)
T 3bor_A 177 FVLDEADEMLSRG 189 (237)
T ss_dssp EEEESHHHHHHTT
T ss_pred EEECCchHhhccC
Confidence 9999999998765
No 10
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.4e-32 Score=241.04 Aligned_cols=181 Identities=33% Similarity=0.495 Sum_probs=152.6
Q ss_pred HHHHHHHHHHcCcEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHH
Q psy17644 143 PQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 143 ~~~~~~~r~~~~i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~l 222 (330)
..++..++..+. ...+.++.+|.++++++.+++++.+.||..|+++|.++++.+++|++++++++||+|||++|+
T Consensus 6 ~~~~~~~~~~~~-----~~~~~~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 6 RESISRLMQNYE-----KINVNEITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp HHHHHHHHHTTT-----TCCGGGCSBGGGSCCCHHHHHHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHH
T ss_pred HhHHHHHHhccc-----cCCCcccCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHH
Confidence 344555665553 223567888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHH
Q psy17644 223 WPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRII 302 (330)
Q Consensus 223 lp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~ 302 (330)
+|++.++...+. ....++++|||+|||+||.|+++.+++++...++.+..++||.....+...+ .+++|+|+||++|.
T Consensus 81 ~~~l~~l~~~~~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~iiv~Tp~~l~ 158 (236)
T 2pl3_A 81 VPVLEALYRLQW-TSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERI-NNINILVCTPGRLL 158 (236)
T ss_dssp HHHHHHHHHTTC-CGGGCCCEEEECSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHH-TTCSEEEECHHHHH
T ss_pred HHHHHHHHhhcc-cccCCceEEEEeCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhC-CCCCEEEECHHHHH
Confidence 999998876321 1235789999999999999999999999988889999999998876665555 46899999999999
Q ss_pred HHHHcC-CCCCCCccEEEeecccccCcCC
Q psy17644 303 DMVKMG-ATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 303 ~~l~~~-~~~l~~i~~lVvDEad~lld~G 330 (330)
.++.+. ...+.++.+|||||||+|+++|
T Consensus 159 ~~l~~~~~~~~~~~~~lViDEah~~~~~~ 187 (236)
T 2pl3_A 159 QHMDETVSFHATDLQMLVLDEADRILDMG 187 (236)
T ss_dssp HHHHHCSSCCCTTCCEEEETTHHHHHHTT
T ss_pred HHHHhcCCcccccccEEEEeChHHHhcCC
Confidence 988765 4668899999999999998875
No 11
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=3.7e-32 Score=244.81 Aligned_cols=161 Identities=40% Similarity=0.654 Sum_probs=148.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
++.+|.+++|++.+++++.+.||..|+++|.++++.+++|++++++++||||||++|++|++.++.... .++++|
T Consensus 41 ~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~-----~~~~~l 115 (249)
T 3ber_A 41 ETKTFKDLGVTDVLCEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETP-----QRLFAL 115 (249)
T ss_dssp HHCCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC-----CSSCEE
T ss_pred ccCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCC-----CCceEE
Confidence 467799999999999999999999999999999999999999999999999999999999999987643 468899
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHc-CCCCCCCccEEEeecc
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM-GATKLNRVTFLVLDEA 323 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~-~~~~l~~i~~lVvDEa 323 (330)
||+|||+||.|+++.+++++...++++.+++||.....+...+..+++|+|+||++|.+++.+ ....++++++||||||
T Consensus 116 il~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEa 195 (249)
T 3ber_A 116 VLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEA 195 (249)
T ss_dssp EECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcCh
Confidence 999999999999999999998888999999999998888888888899999999999999876 4567899999999999
Q ss_pred cccCcCC
Q psy17644 324 DRMFDMG 330 (330)
Q Consensus 324 d~lld~G 330 (330)
|+|+++|
T Consensus 196 h~l~~~~ 202 (249)
T 3ber_A 196 DRILNMD 202 (249)
T ss_dssp HHHHHTT
T ss_pred hhhhccC
Confidence 9998765
No 12
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.98 E-value=9e-32 Score=234.27 Aligned_cols=159 Identities=33% Similarity=0.614 Sum_probs=145.4
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
.+|++++|++.+++++.+.||..|+|+|.++++.+++|+++++++|||+|||++|++|++.++... ..++++||+
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~~~~~~lil 77 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLK-----KDNIQAMVI 77 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTTCCSCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTT-----SCSCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhccc-----CCCeeEEEE
Confidence 469999999999999999999999999999999999999999999999999999999999886442 246899999
Q ss_pred cccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
+||++|+.|+++.+++++... +..+..++||.....+...+..+++|+|+||++|..++.++...++++.+|||||||+
T Consensus 78 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~ 157 (206)
T 1vec_A 78 VPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADK 157 (206)
T ss_dssp CSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHH
T ss_pred eCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHH
Confidence 999999999999999998876 7888899999988877777788899999999999999998888899999999999999
Q ss_pred cCcCC
Q psy17644 326 MFDMG 330 (330)
Q Consensus 326 lld~G 330 (330)
|+++|
T Consensus 158 ~~~~~ 162 (206)
T 1vec_A 158 LLSQD 162 (206)
T ss_dssp HTSTT
T ss_pred hHhhC
Confidence 98754
No 13
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.98 E-value=1.1e-32 Score=242.87 Aligned_cols=161 Identities=36% Similarity=0.633 Sum_probs=143.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
|..+|.+++|++.+++++.+.||..|+++|.++++.+++|++++++++||+|||++|++|++.++... ..++++|
T Consensus 2 ~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~-----~~~~~~l 76 (219)
T 1q0u_A 2 AETQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPE-----RAEVQAV 76 (219)
T ss_dssp --CCGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTT-----SCSCCEE
T ss_pred CCCCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhC-----cCCceEE
Confidence 45679999999999999999999999999999999999999999999999999999999999887543 2468999
Q ss_pred EEcccHHHHHHHHHHHHHhccCC----CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKGY----NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~~----~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
||+|||+|+.|+++.+++++... ++.+..++||.....+...+..+++|+|+||++|.+++.++...++++.+|||
T Consensus 77 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lVi 156 (219)
T 1q0u_A 77 ITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVV 156 (219)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEE
T ss_pred EEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEE
Confidence 99999999999999999998766 67888899988776665556667899999999999999988788899999999
Q ss_pred ecccccCcCC
Q psy17644 321 DEADRMFDMG 330 (330)
Q Consensus 321 DEad~lld~G 330 (330)
||||+|+++|
T Consensus 157 DEah~~~~~~ 166 (219)
T 1q0u_A 157 DEADLMLDMG 166 (219)
T ss_dssp CSHHHHHHTT
T ss_pred cCchHHhhhC
Confidence 9999998775
No 14
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.98 E-value=6.6e-32 Score=238.28 Aligned_cols=165 Identities=33% Similarity=0.553 Sum_probs=141.9
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCC
Q psy17644 160 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGD 239 (330)
Q Consensus 160 ~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~ 239 (330)
...+.++.+|.+++|++.+++++.+.||..|+|+|.++++.+++|++++++++||+|||++|++|++.++... ..
T Consensus 7 ~~~~~~~~~f~~l~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~-----~~ 81 (224)
T 1qde_A 7 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VK 81 (224)
T ss_dssp BSCCCCCCCGGGGTCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTT-----CC
T ss_pred cccCcccCChhhcCCCHHHHHHHHHCCCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhcc-----CC
Confidence 3457788999999999999999999999999999999999999999999999999999999999999887543 24
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEE
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLV 319 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lV 319 (330)
++++|||+|||+|+.|+++.+++++...++++..++||.....+...+.. ++|+|+||++|..++.+....++++.+||
T Consensus 82 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 82 APQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRD-AQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECC----------CTT-CSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred CceEEEEECCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCC-CCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 68999999999999999999999998888999999998877666555554 89999999999999998888899999999
Q ss_pred eecccccCcCC
Q psy17644 320 LDEADRMFDMG 330 (330)
Q Consensus 320 vDEad~lld~G 330 (330)
|||||+|+++|
T Consensus 161 iDEah~~~~~~ 171 (224)
T 1qde_A 161 LDEADEMLSSG 171 (224)
T ss_dssp EETHHHHHHTT
T ss_pred EcChhHHhhhh
Confidence 99999998765
No 15
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.1e-31 Score=243.55 Aligned_cols=163 Identities=35% Similarity=0.537 Sum_probs=143.5
Q ss_pred CCCCCCC--CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 167 SSFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 167 ~~f~~~~--l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
.+|.+++ +++.+++++...||..|+|+|.++++.++.|+|++++++||||||++|++|++..+...+. ....++++|
T Consensus 52 ~~f~~l~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~-~~~~~~~~l 130 (262)
T 3ly5_A 52 TSFASLCNLVNENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRF-MPRNGTGVL 130 (262)
T ss_dssp GCC-----CCCHHHHHHHHHTTCCBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTC-CGGGCCCEE
T ss_pred CChhHhccccCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccc-cccCCceEE
Confidence 3466776 9999999999999999999999999999999999999999999999999999999876431 123578999
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcC-CCCCCCccEEEeecc
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG-ATKLNRVTFLVLDEA 323 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~-~~~l~~i~~lVvDEa 323 (330)
||+|||+||.|+++.+++++...+..+..++||.....+...+..+++|+||||++|..++.+. ...++++.+||||||
T Consensus 131 il~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEa 210 (262)
T 3ly5_A 131 ILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEA 210 (262)
T ss_dssp EECSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSH
T ss_pred EEeCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcCh
Confidence 9999999999999999999998899999999999988888888888999999999999988765 367899999999999
Q ss_pred cccCcCC
Q psy17644 324 DRMFDMG 330 (330)
Q Consensus 324 d~lld~G 330 (330)
|+|+++|
T Consensus 211 h~l~~~~ 217 (262)
T 3ly5_A 211 DRILDVG 217 (262)
T ss_dssp HHHHHTT
T ss_pred HHHhhhh
Confidence 9999876
No 16
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.97 E-value=7.4e-31 Score=231.08 Aligned_cols=165 Identities=32% Similarity=0.540 Sum_probs=141.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCC
Q psy17644 159 GADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPG 238 (330)
Q Consensus 159 g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~ 238 (330)
|...+....+|.+++|++.+++++.+.||..|+|+|.++++.+++|++++++++||+|||++|++|++.++... .
T Consensus 6 ~~~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~-----~ 80 (220)
T 1t6n_A 6 GSYVSIHSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----T 80 (220)
T ss_dssp --------CCSTTSCCCHHHHHHHHHTTCCCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCC-----T
T ss_pred CCcccccCCCHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhcc-----C
Confidence 34445566789999999999999999999999999999999999999999999999999999999999876432 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCcc
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVT 316 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~ 316 (330)
.++++|||+||++|+.|+++.+++++... ++++..++||.....+...+.. .++|+|+||++|..++.+....+.++.
T Consensus 81 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~ 160 (220)
T 1t6n_A 81 GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 160 (220)
T ss_dssp TCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCC
T ss_pred CCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCC
Confidence 45799999999999999999999998776 7888899999887766666654 479999999999999998888899999
Q ss_pred EEEeecccccCc
Q psy17644 317 FLVLDEADRMFD 328 (330)
Q Consensus 317 ~lVvDEad~lld 328 (330)
+|||||||+|++
T Consensus 161 ~lViDEah~~~~ 172 (220)
T 1t6n_A 161 HFILDECDKMLE 172 (220)
T ss_dssp EEEEESHHHHHS
T ss_pred EEEEcCHHHHhc
Confidence 999999999976
No 17
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.97 E-value=6.1e-31 Score=228.98 Aligned_cols=159 Identities=45% Similarity=0.692 Sum_probs=143.0
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
+|.+++|++.+++++.+.|+..|+|+|.++++.+++|++++++++||+|||++|++|++.++..... ...++++||++
T Consensus 2 ~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~--~~~~~~~lil~ 79 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQE--RGRKPRALVLT 79 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCC--TTCCCSEEEEC
T ss_pred ChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccc--cCCCCcEEEEE
Confidence 5899999999999999999999999999999999999999999999999999999999988764321 23578999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 248 PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 248 Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
|||+|+.|+++.+++++.. +++..++||.....+...+..+++|+|+||++|..++.++...++++.+|||||||+|+
T Consensus 80 P~~~L~~q~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~ 157 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPH--LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEML 157 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTT--SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhc--ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhh
Confidence 9999999999999999764 67788899988777777777789999999999999998888889999999999999998
Q ss_pred cCC
Q psy17644 328 DMG 330 (330)
Q Consensus 328 d~G 330 (330)
++|
T Consensus 158 ~~~ 160 (207)
T 2gxq_A 158 SMG 160 (207)
T ss_dssp HTT
T ss_pred ccc
Confidence 764
No 18
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.97 E-value=6.3e-30 Score=244.78 Aligned_cols=165 Identities=33% Similarity=0.570 Sum_probs=151.1
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q psy17644 161 DPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDG 240 (330)
Q Consensus 161 ~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~ 240 (330)
..+.+..+|.+++|++.+++++.+.||..|+|+|.++++.+++|++++++++||+|||++|++|++.++... ..+
T Consensus 31 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~ 105 (410)
T 2j0s_A 31 EEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ-----VRE 105 (410)
T ss_dssp TTCCCCCSGGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTT-----SCS
T ss_pred CCccCCCCHhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhc-----cCC
Confidence 344567789999999999999999999999999999999999999999999999999999999999876432 246
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 241 PMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 241 ~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
+++|||+|||+|+.|+++.+++++...++.+..++||.....+...+..+++|+|+||++|.+++.++...+.++.+|||
T Consensus 106 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vVi 185 (410)
T 2j0s_A 106 TQALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVL 185 (410)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEE
T ss_pred ceEEEEcCcHHHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEE
Confidence 89999999999999999999999988899999999999988888888888999999999999999988888899999999
Q ss_pred ecccccCcCC
Q psy17644 321 DEADRMFDMG 330 (330)
Q Consensus 321 DEad~lld~G 330 (330)
||||+|+++|
T Consensus 186 DEah~~~~~~ 195 (410)
T 2j0s_A 186 DEADEMLNKG 195 (410)
T ss_dssp ETHHHHTSTT
T ss_pred ccHHHHHhhh
Confidence 9999998875
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.96 E-value=2.9e-28 Score=233.01 Aligned_cols=166 Identities=33% Similarity=0.521 Sum_probs=149.6
Q ss_pred CCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCC
Q psy17644 160 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGD 239 (330)
Q Consensus 160 ~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~ 239 (330)
...+..+.+|..+++++.+++.+.+.|+..|+++|.++++.+++|++++++++||+|||++|++|++.++... ..
T Consensus 33 ~~~~~~~~~f~~~~l~~~~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~ 107 (414)
T 3eiq_A 33 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELD-----LK 107 (414)
T ss_dssp CCCCCCCCCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTT-----SC
T ss_pred CCccchhcCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhc-----CC
Confidence 3445667889999999999999999999999999999999999999999999999999999999999886543 24
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh-CCCeEEEEChHHHHHHHHcCCCCCCCccEE
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE-LGAEIVVGTPGRIIDMVKMGATKLNRVTFL 318 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~l~~i~~l 318 (330)
++++|||+||++|+.|+++.+++++...+..+..++||.........+. .+++|+|+||++|.+++.+....+.++.+|
T Consensus 108 ~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~v 187 (414)
T 3eiq_A 108 ATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMF 187 (414)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEE
T ss_pred ceeEEEEeChHHHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEE
Confidence 6889999999999999999999999888999999999998877766665 678999999999999999888888999999
Q ss_pred EeecccccCcCC
Q psy17644 319 VLDEADRMFDMG 330 (330)
Q Consensus 319 VvDEad~lld~G 330 (330)
||||||+|+++|
T Consensus 188 ViDEah~~~~~~ 199 (414)
T 3eiq_A 188 VLDEADEMLSRG 199 (414)
T ss_dssp EECSHHHHHHTT
T ss_pred EEECHHHhhccC
Confidence 999999988764
No 20
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.96 E-value=2.5e-28 Score=232.73 Aligned_cols=160 Identities=33% Similarity=0.583 Sum_probs=144.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeE
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMG 243 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~v 243 (330)
.+..+|++++|++.++++|.+.||..|+|+|.++++.+++|++++++++||+|||++|++|++.++... ..++++
T Consensus 18 ~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~~ 92 (400)
T 1s2m_A 18 TKGNTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPK-----LNKIQA 92 (400)
T ss_dssp ---CCGGGGCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTT-----SCSCCE
T ss_pred cccCChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhc-----cCCccE
Confidence 345679999999999999999999999999999999999999999999999999999999999886432 246789
Q ss_pred EEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecc
Q psy17644 244 LILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEA 323 (330)
Q Consensus 244 Lil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEa 323 (330)
|||+||++|+.|+++.+++++...++.+..++|+.....+...+..+++|+|+||++|..++.+....+.++.+||||||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEa 172 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESH
T ss_pred EEEcCCHHHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCc
Confidence 99999999999999999999988899999999999887777777778999999999999999888888999999999999
Q ss_pred cccCc
Q psy17644 324 DRMFD 328 (330)
Q Consensus 324 d~lld 328 (330)
|++++
T Consensus 173 H~~~~ 177 (400)
T 1s2m_A 173 DKMLS 177 (400)
T ss_dssp HHHSS
T ss_pred hHhhh
Confidence 99875
No 21
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.95 E-value=4.8e-28 Score=229.73 Aligned_cols=163 Identities=33% Similarity=0.562 Sum_probs=146.3
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCC
Q psy17644 162 PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGP 241 (330)
Q Consensus 162 ~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~ 241 (330)
...++.+|++++|++.+++++...||..|+|+|.++++.+++|++++++++||+|||++|++|++.++... ..++
T Consensus 16 ~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~-----~~~~ 90 (394)
T 1fuu_A 16 YDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTS-----VKAP 90 (394)
T ss_dssp SCCCCCSSGGGCCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTT-----CCSC
T ss_pred cccccCChhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhcc-----CCCC
Confidence 34567789999999999999999999999999999999999999999999999999999999999886542 2478
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEee
Q psy17644 242 MGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLD 321 (330)
Q Consensus 242 ~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvD 321 (330)
++|||+||++|+.|+++.+.+++...++++..++||.........+. +++|+|+||++|...+.+....+.++.+||||
T Consensus 91 ~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiD 169 (394)
T 1fuu_A 91 QALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILD 169 (394)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHH-HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEE
T ss_pred CEEEEcCCHHHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcC-CCCEEEECHHHHHHHHHhCCcchhhCcEEEEE
Confidence 99999999999999999999999888899999999988776655555 57999999999999998887888999999999
Q ss_pred cccccCcCC
Q psy17644 322 EADRMFDMG 330 (330)
Q Consensus 322 Ead~lld~G 330 (330)
|||+++++|
T Consensus 170 Eah~~~~~~ 178 (394)
T 1fuu_A 170 EADEMLSSG 178 (394)
T ss_dssp THHHHHHTT
T ss_pred ChHHhhCCC
Confidence 999987654
No 22
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.95 E-value=1.7e-27 Score=225.94 Aligned_cols=158 Identities=33% Similarity=0.561 Sum_probs=140.9
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
.+|++++|++.++++|.+.||..|+|+|.++++.++.|++++++++||+|||++|++|++..+... ..++++|||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~-----~~~~~~lil 82 (391)
T 1xti_A 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPV-----TGQVSVLVM 82 (391)
T ss_dssp -CGGGGCCCHHHHHHHHHHSCCSCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCC-----TTCCCEEEE
T ss_pred CChhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhccc-----CCCeeEEEE
Confidence 569999999999999999999999999999999999999999999999999999999999876432 246799999
Q ss_pred cccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEAD 324 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad 324 (330)
+||++|+.|+++.+++++... ++++..++||.........+.. .++|+|+||++|..++.+....+.++.+|||||||
T Consensus 83 ~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH 162 (391)
T 1xti_A 83 CHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 162 (391)
T ss_dssp CSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHH
T ss_pred CCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHH
Confidence 999999999999999998776 7888999999887766665554 47999999999999998888889999999999999
Q ss_pred ccCcC
Q psy17644 325 RMFDM 329 (330)
Q Consensus 325 ~lld~ 329 (330)
+++++
T Consensus 163 ~~~~~ 167 (391)
T 1xti_A 163 KMLEQ 167 (391)
T ss_dssp HHTSS
T ss_pred HHhhc
Confidence 99763
No 23
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.95 E-value=8e-28 Score=241.16 Aligned_cols=163 Identities=33% Similarity=0.519 Sum_probs=139.0
Q ss_pred CCCCCCC----CCHHHHHHHHHCCCCCCCHHHHHhhhhhc--CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q psy17644 167 SSFGHFG----FDEVLMKALRKCEYTSPTPIQAQAVPAAL--SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDG 240 (330)
Q Consensus 167 ~~f~~~~----l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~--~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~ 240 (330)
.+|.++. |++.+++++...||..|||+|.++|+.++ .|+|++++||||+|||++|++|++.++...+. ....+
T Consensus 17 ~~~~~l~~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~-~~~~~ 95 (579)
T 3sqw_A 17 VTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKF-DSQYM 95 (579)
T ss_dssp CCHHHHHHTTSSCHHHHHHHHTTTCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTT-SSTTS
T ss_pred cCHHHHhhcCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccc-cccCC
Confidence 3455543 99999999999999999999999999999 78999999999999999999999999887542 12346
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhcc----CCCceEEEEECCCchHHHHHHHh-CCCeEEEEChHHHHHHHHcC-CCCCCC
Q psy17644 241 PMGLILAPTRELSQQIYNEAKRFGK----GYNLSVVCCYGGGSKWDQSKALE-LGAEIVVGTPGRIIDMVKMG-ATKLNR 314 (330)
Q Consensus 241 ~~vLil~Ptr~La~Qi~~~~~~l~~----~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~-~~~l~~ 314 (330)
+++|||+|||+||.|++..+++++. .....+..++||.....+...+. .+++||||||++|.+++.+. ...++.
T Consensus 96 ~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~ 175 (579)
T 3sqw_A 96 VKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRF 175 (579)
T ss_dssp CCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTT
T ss_pred CeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhcccccccc
Confidence 8999999999999999999999863 23467888899988777766664 37899999999999988764 345788
Q ss_pred ccEEEeecccccCcCC
Q psy17644 315 VTFLVLDEADRMFDMG 330 (330)
Q Consensus 315 i~~lVvDEad~lld~G 330 (330)
+.+|||||||+|++||
T Consensus 176 ~~~lViDEah~l~~~g 191 (579)
T 3sqw_A 176 VDYKVLDEADRLLEIG 191 (579)
T ss_dssp CCEEEEETHHHHTSTT
T ss_pred CCEEEEEChHHhhcCC
Confidence 9999999999999987
No 24
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.95 E-value=1.3e-27 Score=234.02 Aligned_cols=157 Identities=30% Similarity=0.503 Sum_probs=134.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCC
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGP 241 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~ 241 (330)
.++.+|..++|++.++++|.++||..|||+|.++||.++.+ ++++++|+||||||++|++|++.++... ..++
T Consensus 89 ~~~~~f~~~~l~~~l~~~l~~~g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~-----~~~~ 163 (479)
T 3fmp_B 89 YSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----NKYP 163 (479)
T ss_dssp CCCCCSGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTT-----SCSC
T ss_pred cCcCCHHHcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhc-----CCCC
Confidence 34778999999999999999999999999999999999987 9999999999999999999999876543 2467
Q ss_pred eEEEEcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHc-CCCCCCCccEEE
Q psy17644 242 MGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM-GATKLNRVTFLV 319 (330)
Q Consensus 242 ~vLil~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~-~~~~l~~i~~lV 319 (330)
++|||+|||+||.|++..+++++... ++.+.+..++...... ...+++|+||||++|.+++.+ +...++++.+||
T Consensus 164 ~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iV 240 (479)
T 3fmp_B 164 QCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV 240 (479)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEE
T ss_pred cEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCcccccc---ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEE
Confidence 99999999999999999999988754 5677777776654322 134579999999999999965 456689999999
Q ss_pred eecccccCc
Q psy17644 320 LDEADRMFD 328 (330)
Q Consensus 320 vDEad~lld 328 (330)
|||||+|++
T Consensus 241 iDEah~~~~ 249 (479)
T 3fmp_B 241 LDEADVMIA 249 (479)
T ss_dssp ECCHHHHHT
T ss_pred EECHHHHhh
Confidence 999999986
No 25
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.95 E-value=3.3e-27 Score=223.64 Aligned_cols=155 Identities=30% Similarity=0.570 Sum_probs=137.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPM 242 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~ 242 (330)
...+|++++|++.+++++.+.||..|+|+|.++++.++.+ +++++++|||+|||++|++|++.++... ..+++
T Consensus 3 ~~~~f~~~~l~~~l~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~-----~~~~~ 77 (395)
T 3pey_A 3 MAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPE-----DASPQ 77 (395)
T ss_dssp -CCSSTTSCCCHHHHHHHHHTTCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----CCSCC
T ss_pred cccCHhhCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccC-----CCCcc
Confidence 3578999999999999999999999999999999999988 9999999999999999999999886543 25789
Q ss_pred EEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeec
Q psy17644 243 GLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDE 322 (330)
Q Consensus 243 vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDE 322 (330)
+|||+||++|+.|+++.+++++...++.+..++++...... ..+++|+|+||++|..++.+....+.++.+|||||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDSFEKNK----QINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTS----CBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhcccCeeEEEEecCchhhhc----cCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 99999999999999999999998888888888877653321 23689999999999999988888899999999999
Q ss_pred ccccCc
Q psy17644 323 ADRMFD 328 (330)
Q Consensus 323 ad~lld 328 (330)
||++++
T Consensus 154 ah~~~~ 159 (395)
T 3pey_A 154 ADNMLD 159 (395)
T ss_dssp HHHHHH
T ss_pred hhhhcC
Confidence 999875
No 26
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.95 E-value=4.4e-27 Score=220.64 Aligned_cols=158 Identities=38% Similarity=0.676 Sum_probs=142.4
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC-CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG-RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
..+|.+++|++.+++++.+.||..|+|+|.++++.++++ ++++++++||+|||++|++|++.++.. ..++++|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~------~~~~~~l 78 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNE------NNGIEAI 78 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCS------SSSCCEE
T ss_pred cCchhhcCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcc------cCCCcEE
Confidence 356999999999999999999999999999999999988 799999999999999999999887543 2478999
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccc
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEAD 324 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad 324 (330)
||+||++|+.|+++.+++++...++.+..++||.....+...+. +++|+|+||++|..++.+....+.++.+|||||||
T Consensus 79 il~P~~~L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 157 (367)
T 1hv8_A 79 ILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD 157 (367)
T ss_dssp EECSCHHHHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHH-TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHH
T ss_pred EEcCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcC-CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCch
Confidence 99999999999999999998888889999999998877666665 58999999999999998888889999999999999
Q ss_pred ccCcCC
Q psy17644 325 RMFDMG 330 (330)
Q Consensus 325 ~lld~G 330 (330)
++.++|
T Consensus 158 ~~~~~~ 163 (367)
T 1hv8_A 158 EMLNMG 163 (367)
T ss_dssp HHHTTT
T ss_pred Hhhhhc
Confidence 988764
No 27
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.95 E-value=2.1e-27 Score=236.90 Aligned_cols=156 Identities=34% Similarity=0.531 Sum_probs=134.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhc--CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAAL--SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~--~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
|++.+++++.+.||..|||+|.++|+.++ .|+|++++||||||||++|++|++.++...+.. ...++++|||+|||+
T Consensus 79 l~~~l~~~l~~~g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~-~~~~~~~lil~Ptr~ 157 (563)
T 3i5x_A 79 LDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFD-SQYMVKAVIVAPTRD 157 (563)
T ss_dssp SCHHHHHHHHTTCCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTS-STTSCCEEEECSSHH
T ss_pred CCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhcccc-ccCCeeEEEEcCcHH
Confidence 99999999999999999999999999999 679999999999999999999999999875421 234679999999999
Q ss_pred HHHHHHHHHHHhccC----CCceEEEEECCCchHHHHHHH-hCCCeEEEEChHHHHHHHHcC-CCCCCCccEEEeecccc
Q psy17644 252 LSQQIYNEAKRFGKG----YNLSVVCCYGGGSKWDQSKAL-ELGAEIVVGTPGRIIDMVKMG-ATKLNRVTFLVLDEADR 325 (330)
Q Consensus 252 La~Qi~~~~~~l~~~----~~~~~~~~~gg~~~~~~~~~l-~~~~dIiV~TP~~L~~~l~~~-~~~l~~i~~lVvDEad~ 325 (330)
||.|+++.+++++.. ....+..++||.....+...+ ..+++||||||++|.+++.+. ...++.+.+|||||||+
T Consensus 158 La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~ 237 (563)
T 3i5x_A 158 LALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADR 237 (563)
T ss_dssp HHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHH
T ss_pred HHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHH
Confidence 999999999997542 245688889998877766555 447899999999999988764 33578899999999999
Q ss_pred cCcCC
Q psy17644 326 MFDMG 330 (330)
Q Consensus 326 lld~G 330 (330)
|++||
T Consensus 238 l~~~~ 242 (563)
T 3i5x_A 238 LLEIG 242 (563)
T ss_dssp HTSTT
T ss_pred Hhccc
Confidence 99987
No 28
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.95 E-value=3.4e-27 Score=225.22 Aligned_cols=160 Identities=30% Similarity=0.506 Sum_probs=137.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCC
Q psy17644 161 DPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPG 238 (330)
Q Consensus 161 ~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~ 238 (330)
.++.++.+|.+++|++.+++++.+.||..|+|+|.++++.++++ +++++++|||+|||++|++|++.++... .
T Consensus 19 ~~~~~~~~f~~~~l~~~l~~~l~~~g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~-----~ 93 (412)
T 3fht_A 19 SPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPA-----N 93 (412)
T ss_dssp STTCCSSCTGGGTCCHHHHHHHHHTTCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTT-----S
T ss_pred CCccccCCHhhCCCCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhc-----C
Confidence 44566889999999999999999999999999999999999987 9999999999999999999999887543 2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCC-CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHc-CCCCCCCcc
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM-GATKLNRVT 316 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~-~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~-~~~~l~~i~ 316 (330)
.++++|||+||++||.|+++.+++++... +..+....++...... ...+++|+|+||++|..++.+ ....+.++.
T Consensus 94 ~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~ 170 (412)
T 3fht_A 94 KYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERG---QKISEQIVIGTPGTVLDWCSKLKFIDPKKIK 170 (412)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTT---CCCCCSEEEECHHHHHHHHTTSCSSCGGGCC
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhh---hcCCCCEEEECchHHHHHHHhcCCcChhhCc
Confidence 46799999999999999999999998764 5677777777654332 134579999999999999865 456688999
Q ss_pred EEEeecccccCc
Q psy17644 317 FLVLDEADRMFD 328 (330)
Q Consensus 317 ~lVvDEad~lld 328 (330)
+|||||||+|++
T Consensus 171 ~iViDEah~~~~ 182 (412)
T 3fht_A 171 VFVLDEADVMIA 182 (412)
T ss_dssp EEEEETHHHHHS
T ss_pred EEEEeCHHHHhh
Confidence 999999999876
No 29
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.94 E-value=2e-26 Score=213.89 Aligned_cols=145 Identities=36% Similarity=0.622 Sum_probs=132.4
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELS 253 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La 253 (330)
|++.|.+++.++||..|+|+|.++++.+++|+++++++|||+|||++|++|++.. ++++|||+||++|+
T Consensus 1 l~~~i~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~-----------~~~~liv~P~~~L~ 69 (337)
T 2z0m_A 1 MNEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILEL-----------GMKSLVVTPTRELT 69 (337)
T ss_dssp CCHHHHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHH-----------TCCEEEECSSHHHH
T ss_pred CCHHHHHHHHHcCCCCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhh-----------cCCEEEEeCCHHHH
Confidence 5788999999999999999999999999999999999999999999999998864 57899999999999
Q ss_pred HHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 254 QQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 254 ~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
.|+++.+++++...+..+..++||.....+...+.. ++|+|+||++|..++.+....+.++.+|||||||++.++|
T Consensus 70 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~ 145 (337)
T 2z0m_A 70 RQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVRN-ADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG 145 (337)
T ss_dssp HHHHHHHHHHTTTSCCCEEEECTTSCHHHHHHHHTT-CSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTT
T ss_pred HHHHHHHHHHhhhcCCcEEEEECCcchHHHHhhcCC-CCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccc
Confidence 999999999998888999999999888776666654 8999999999999998877788999999999999988764
No 30
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.93 E-value=3.1e-26 Score=233.00 Aligned_cols=184 Identities=19% Similarity=0.220 Sum_probs=148.7
Q ss_pred chhhhhhhcCCCChhhhccCHHHHHHHHHHcCcEeeCCCCCCCCCCCCCCCCCHHHHHHHH--------HCCCCCCCHHH
Q psy17644 123 VYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALR--------KCEYTSPTPIQ 194 (330)
Q Consensus 123 ~~~~~~~~f~~~~~~~~~~~~~~~~~~r~~~~i~~~g~~~p~p~~~f~~~~l~~~l~~~l~--------~~~~~~pt~iQ 194 (330)
.+.++...++...+++..++..++......+...+.... .|...+.+++. ..|+ .|||+|
T Consensus 21 ~~~~~~~~in~~~~~~~~lsd~el~~~t~~~~~~~~~g~-----------~ld~~l~ea~a~vrea~~r~lG~-~pt~VQ 88 (844)
T 1tf5_A 21 RYEKIANDIDAIRGDYENLSDDALKHKTIEFKERLEKGA-----------TTDDLLVEAFAVVREASRRVTGM-FPFKVQ 88 (844)
T ss_dssp HHHHHHHHHHHTTHHHHTCCHHHHHHHHHHHHHHHHTTC-----------CHHHHHHHHHHHHHHHHHHHHSC-CCCHHH
T ss_pred HHHHHHHHHHhhhHHHHhCCHHHHHHHHHHHHHHHhcCC-----------ChHHHHHHHHHHHHHHHHHHcCC-CCcHHH
Confidence 467888888888899999999998776665543322111 12333444433 5799 999999
Q ss_pred HHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEE
Q psy17644 195 AQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCC 274 (330)
Q Consensus 195 ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~ 274 (330)
..++|.++.|+ |+.++||+|||++|+||++.+.+ .++.|+||+|||+||.|+++++..++..+++++.++
T Consensus 89 ~~~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL--------~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v~~i 158 (844)
T 1tf5_A 89 LMGGVALHDGN--IAEMKTGEGKTLTSTLPVYLNAL--------TGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTVGLN 158 (844)
T ss_dssp HHHHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHT--------TSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEEEC
T ss_pred HHhhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHH--------cCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeEEEE
Confidence 99999999999 99999999999999999996654 367899999999999999999999999999999999
Q ss_pred ECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC------CCCCCCccEEEeecccccC-cCC
Q psy17644 275 YGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG------ATKLNRVTFLVLDEADRMF-DMG 330 (330)
Q Consensus 275 ~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~------~~~l~~i~~lVvDEad~ll-d~G 330 (330)
+||.+...+.. ..++||+||||++| ++++... ...++.+.++||||||+|| |+|
T Consensus 159 ~gg~~~~~r~~--~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea 220 (844)
T 1tf5_A 159 LNSMSKDEKRE--AYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEA 220 (844)
T ss_dssp CTTSCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTT
T ss_pred eCCCCHHHHHH--hcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcc
Confidence 99988654433 34689999999999 7777543 2457899999999999998 764
No 31
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.93 E-value=5.2e-26 Score=218.40 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=119.8
Q ss_pred HHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHH
Q psy17644 178 LMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257 (330)
Q Consensus 178 l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~ 257 (330)
+.+.+++.....|||+|.++++.+++|+|+++++|||||||++|++|++..+ ..++++|||+|||+||.|++
T Consensus 10 ~~~~l~~~~~~~~~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~--------~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 10 FRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh--------cCCCEEEEEECCHHHHHHHH
Confidence 4444554333489999999999999999999999999999999999988765 24789999999999999999
Q ss_pred HHHHHhccCCCceEEEEECCCch---HHHHHHHhCC-CeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 258 NEAKRFGKGYNLSVVCCYGGGSK---WDQSKALELG-AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 258 ~~~~~l~~~~~~~~~~~~gg~~~---~~~~~~l~~~-~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
+.+++++. .++++..++||... ..+...+..+ ++|+|+||++|.+++.. ..+.++.+|||||||++++|
T Consensus 82 ~~~~~~~~-~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~ 154 (414)
T 3oiy_A 82 ERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKA 154 (414)
T ss_dssp HHHHHHCC-SSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHC
T ss_pred HHHHHHcc-CCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhc
Confidence 99999988 78999999999987 5555666665 99999999999988764 56779999999999876543
No 32
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.92 E-value=8.5e-25 Score=216.63 Aligned_cols=142 Identities=22% Similarity=0.196 Sum_probs=120.2
Q ss_pred CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
+...|+|+|.++++.+++|++++++++||+|||++|++|++..+...+. ..++++|||+||++|+.|++..+++++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcc---cCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999999999988876432 2378999999999999999999999998
Q ss_pred CCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC-CCCCccEEEeecccccCcCC
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT-KLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-~l~~i~~lVvDEad~lld~G 330 (330)
..++++..++|+.....+...+..+++|+|+||++|..++..... .+.++.+|||||||++.++|
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 146 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH 146 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTS
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCcc
Confidence 888999999999877666666666789999999999999988777 78999999999999998765
No 33
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.91 E-value=1.9e-24 Score=213.62 Aligned_cols=140 Identities=19% Similarity=0.194 Sum_probs=124.6
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
.+|+|+|.++++.+++|++++++++||+|||++|++|++.++...+. ..++++|||+||++|+.|++..+++++...
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 79 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPC---GQKGKVVFFANQIPVYEQQATVFSRYFERL 79 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---CCCCEEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 36999999999999999999999999999999999999998876432 247899999999999999999999999888
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC-CCCCccEEEeecccccCcCC
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT-KLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-~l~~i~~lVvDEad~lld~G 330 (330)
++++..++|+.....+...+..+++|+|+||++|..++..... .+.++.+|||||||++...|
T Consensus 80 ~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~ 143 (555)
T 3tbk_A 80 GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH 143 (555)
T ss_dssp TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC
T ss_pred CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc
Confidence 9999999999877666666666789999999999999988776 68899999999999998754
No 34
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.91 E-value=4.4e-24 Score=217.86 Aligned_cols=146 Identities=18% Similarity=0.185 Sum_probs=124.3
Q ss_pred HHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 180 KALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 180 ~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
.++..+|+..|+|+|.++++.++.|+++|++++||+|||++|++|++.++...+. ..++++|||+||++|+.|++..
T Consensus 4 ~~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 4 SDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQ---GQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp ---CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCT---TCCCCEEEECSSHHHHHHHHHH
T ss_pred CcccccCCCCccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCcc---CCCCeEEEEECCHHHHHHHHHH
Confidence 4556789999999999999999999999999999999999999999998876431 2347899999999999999999
Q ss_pred HHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC-CCCCccEEEeecccccCc
Q psy17644 260 AKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT-KLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 260 ~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-~l~~i~~lVvDEad~lld 328 (330)
+++++...++++..++||.....+...+..+++|+|+||++|.+++..... .++++.+|||||||++..
T Consensus 81 ~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~ 150 (696)
T 2ykg_A 81 FSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSK 150 (696)
T ss_dssp HHHHTTTTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCST
T ss_pred HHHHhccCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccC
Confidence 999998888999999998876555555666799999999999999988766 688999999999999753
No 35
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.90 E-value=8e-24 Score=212.35 Aligned_cols=149 Identities=19% Similarity=0.302 Sum_probs=124.8
Q ss_pred CCCCC--CCCCCHHHHHHHHH-CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q psy17644 166 VSSFG--HFGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPM 242 (330)
Q Consensus 166 ~~~f~--~~~l~~~l~~~l~~-~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~ 242 (330)
...|. .+++++.+...|++ .||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.+ .++
T Consensus 18 ~~~w~~~~~~l~~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g~d~lv~~pTGsGKTl~~~lpal~~-----------~g~ 86 (591)
T 2v1x_A 18 PAAWNKEDFPWSGKVKDILQNVFKLEKFRPLQLETINVTMAGKEVFLVMPTGGGKSLCYQLPALCS-----------DGF 86 (591)
T ss_dssp GGGGCCSCSTTHHHHHHHHHHTSCCCSCCTTHHHHHHHHHTTCCEEEECCTTSCTTHHHHHHHHTS-----------SSE
T ss_pred hhccccccCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEEECCCChHHHHHHHHHHHc-----------CCc
Confidence 34454 57889999999998 69999999999999999999999999999999999999999752 468
Q ss_pred EEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---H---hCCCeEEEEChHHHH------HHHHcCCC
Q psy17644 243 GLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---L---ELGAEIVVGTPGRII------DMVKMGAT 310 (330)
Q Consensus 243 vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l---~~~~dIiV~TP~~L~------~~l~~~~~ 310 (330)
+|||+||++|+.|++..++++ ++.+..+.|+......... + ...++|||+||++|. ..+.+ ..
T Consensus 87 ~lVisP~~~L~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~-~~ 161 (591)
T 2v1x_A 87 TLVICPLISLMEDQLMVLKQL----GISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEK-AY 161 (591)
T ss_dssp EEEECSCHHHHHHHHHHHHHH----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHH-HH
T ss_pred EEEEeCHHHHHHHHHHHHHhc----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHh-hh
Confidence 999999999999999999987 6788888888876654332 2 346899999999874 22322 33
Q ss_pred CCCCccEEEeecccccCcCC
Q psy17644 311 KLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 311 ~l~~i~~lVvDEad~lld~G 330 (330)
.+.++.+|||||||+|++||
T Consensus 162 ~~~~i~~iViDEAH~is~~g 181 (591)
T 2v1x_A 162 EARRFTRIAVDEVHCCSQWG 181 (591)
T ss_dssp HTTCEEEEEEETGGGGSTTC
T ss_pred hccCCcEEEEECcccccccc
Confidence 46789999999999999997
No 36
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.90 E-value=4.2e-25 Score=235.10 Aligned_cols=144 Identities=19% Similarity=0.171 Sum_probs=124.8
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
.|..++++..+...+...++..|||+|.++|+.+.+|++++++|+||||||++|++|++..+. +++++||++
T Consensus 163 ~~~~~~l~~~~~~~~~~~~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~--------~g~rvlvl~ 234 (1108)
T 3l9o_A 163 NYDYTPIAEHKRVNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTS 234 (1108)
T ss_dssp CCCSSTTTTTCCCSCSSCCSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHH--------TTCEEEEEE
T ss_pred CcccCCCChhhhHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHh--------cCCeEEEEc
Confidence 566777777766666677788899999999999999999999999999999999999998873 368999999
Q ss_pred ccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 248 PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 248 Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
|||+|+.|++..+++++. .+..+.|+... ..+++|+|+||++|.+++.+....++++.+|||||||+|+
T Consensus 235 PtraLa~Q~~~~l~~~~~----~VglltGd~~~-------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~ 303 (1108)
T 3l9o_A 235 PIKALSNQKYRELLAEFG----DVGLMTGDITI-------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMR 303 (1108)
T ss_dssp SSHHHHHHHHHHHHHHTS----SEEEECSSCBC-------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTT
T ss_pred CcHHHHHHHHHHHHHHhC----CccEEeCcccc-------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcc
Confidence 999999999999999865 46667777663 3458999999999999998887778899999999999998
Q ss_pred cCC
Q psy17644 328 DMG 330 (330)
Q Consensus 328 d~G 330 (330)
++|
T Consensus 304 d~~ 306 (1108)
T 3l9o_A 304 DKE 306 (1108)
T ss_dssp SHH
T ss_pred ccc
Confidence 764
No 37
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.90 E-value=3.7e-24 Score=217.38 Aligned_cols=133 Identities=18% Similarity=0.164 Sum_probs=116.2
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.| ..|+++|..++|.++.|+ |+.++||+|||++|++|++.+.+ .++.|+||+|||+||.|++..+..++
T Consensus 71 lg-~~p~~VQ~~~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l--------~g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 71 FG-MRHFDVQLLGGMVLNERC--IAEMRTGEGKTLTATLPAYLNAL--------TGKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp HS-CCCCHHHHHHHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHT--------TSSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred cC-CCCChHHHhhcccccCCe--eeeecCCchHHHHHHHHHHHHHH--------cCCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 45 489999999999999998 99999999999999999997654 36789999999999999999999999
Q ss_pred cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcCC------CCCCCccEEEeecccccC-cCC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMGA------TKLNRVTFLVLDEADRMF-DMG 330 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~------~~l~~i~~lVvDEad~ll-d~G 330 (330)
..+++++.+++||.+... +.+..+++|+||||++| ++++..+. ..++.+.++||||||+|| |+|
T Consensus 140 ~~lgl~v~~i~GG~~~~~--r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a 211 (853)
T 2fsf_A 140 EFLGLTVGINLPGMPAPA--KREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEA 211 (853)
T ss_dssp HHTTCCEEECCTTCCHHH--HHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTT
T ss_pred HhcCCeEEEEeCCCCHHH--HHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcC
Confidence 999999999999988643 33444689999999999 78887543 457899999999999999 654
No 38
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.90 E-value=1.6e-24 Score=214.08 Aligned_cols=157 Identities=29% Similarity=0.446 Sum_probs=111.3
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC--CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCC
Q psy17644 163 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDG 240 (330)
Q Consensus 163 p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g--~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~ 240 (330)
|..+..|...++++.+++.+.+.|+..|+++|.++|+.+++| ++++++++||||||++|+++++.++... ..+
T Consensus 115 p~~l~~~~~~~l~~~~~~~l~~~g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~-----~~~ 189 (508)
T 3fho_A 115 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDAS-----VPK 189 (508)
T ss_dssp ------------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTT-----CCS
T ss_pred ccccccccccccccccccccccccccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhC-----CCC
Confidence 445556777789999999999999999999999999999988 9999999999999999999999887543 246
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 241 PMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 241 ~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
+++|||+||++|+.|+++.+++++...++.+...+++..... ...+++|+|+||++|..++.+....+.++.+|||
T Consensus 190 ~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIi 265 (508)
T 3fho_A 190 PQAICLAPSRELARQIMDVVTEMGKYTEVKTAFGIKDSVPKG----AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVL 265 (508)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHSTTSSCCEEC--------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEE
T ss_pred ceEEEEECcHHHHHHHHHHHHHhCCccCeeEEEEeCCccccc----ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEE
Confidence 799999999999999999999998877777766666544322 2346899999999999999888888999999999
Q ss_pred ecccccCc
Q psy17644 321 DEADRMFD 328 (330)
Q Consensus 321 DEad~lld 328 (330)
||||++.+
T Consensus 266 DEaH~~~~ 273 (508)
T 3fho_A 266 DEADNMLD 273 (508)
T ss_dssp CCHHHHTT
T ss_pred echhhhcc
Confidence 99999876
No 39
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.90 E-value=4.3e-24 Score=211.68 Aligned_cols=149 Identities=18% Similarity=0.247 Sum_probs=124.8
Q ss_pred CCCCCCCCCHHHHHHHHH-CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 167 SSFGHFGFDEVLMKALRK-CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~-~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
.+|++++|++.+.+.|++ .||..|+|+|.++|+.+++|+|+++++|||+|||++|++|++.. .+++||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g~d~lv~apTGsGKTl~~~lp~l~~-----------~g~~lv 70 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-----------NGLTVV 70 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTCCSSCCTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-----------SSEEEE
T ss_pred CChhhCCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHh-----------CCCEEE
Confidence 579999999999999998 79999999999999999999999999999999999999999843 367999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHH----HHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEee
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK----ALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLD 321 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~----~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvD 321 (330)
|+|+++|+.|++..++.+ ++.+..+.|+........ .....++|+|+||++|............++.+||||
T Consensus 71 i~P~~aL~~q~~~~l~~~----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViD 146 (523)
T 1oyw_A 71 VSPLISLMKDQVDQLQAN----GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVD 146 (523)
T ss_dssp ECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEES
T ss_pred ECChHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEe
Confidence 999999999999999886 667788888776554332 223458999999999963211112234789999999
Q ss_pred cccccCcCC
Q psy17644 322 EADRMFDMG 330 (330)
Q Consensus 322 Ead~lld~G 330 (330)
|||++.+||
T Consensus 147 EaH~i~~~g 155 (523)
T 1oyw_A 147 EAHCISQWG 155 (523)
T ss_dssp SGGGGCTTS
T ss_pred CccccCcCC
Confidence 999999997
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.90 E-value=8.4e-24 Score=217.06 Aligned_cols=151 Identities=23% Similarity=0.299 Sum_probs=132.3
Q ss_pred CCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhh-hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 168 ~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~-~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
+|.+++|++.+.+.+.+.||..|+|+|.++++. +..++++++++|||||||++|.+|++.++... +.++||+
T Consensus 2 ~f~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~-------~~~~l~i 74 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQ-------GGKAVYI 74 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHH-------CSEEEEE
T ss_pred cHhhcCCCHHHHHHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhC-------CCEEEEE
Confidence 588999999999999999999999999999998 88999999999999999999999999888752 6799999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+|||+||.|++..++++.. .++++..++|+...... . ...++|+|+||++|..++.+....++++.+|||||||++
T Consensus 75 ~P~raLa~q~~~~~~~l~~-~g~~v~~~~G~~~~~~~--~-~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l 150 (720)
T 2zj8_A 75 VPLKALAEEKFQEFQDWEK-IGLRVAMATGDYDSKDE--W-LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLI 150 (720)
T ss_dssp CSSGGGHHHHHHHTGGGGG-GTCCEEEECSCSSCCCG--G-GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGG
T ss_pred cCcHHHHHHHHHHHHHHHh-cCCEEEEecCCCCcccc--c-cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCccc
Confidence 9999999999999976654 47888888887654332 1 235899999999999999887666899999999999999
Q ss_pred CcC
Q psy17644 327 FDM 329 (330)
Q Consensus 327 ld~ 329 (330)
.++
T Consensus 151 ~~~ 153 (720)
T 2zj8_A 151 GSR 153 (720)
T ss_dssp GCT
T ss_pred CCC
Confidence 864
No 41
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.90 E-value=1.4e-23 Score=217.78 Aligned_cols=142 Identities=22% Similarity=0.199 Sum_probs=120.4
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|+..|+|+|.++++.+++|++++++++||+|||++|++|++.++...+. ..++++|||+||++|+.|++..+++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~---~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~ 320 (797)
T 4a2q_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (797)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999999998876421 237899999999999999999999999
Q ss_pred cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC-CCCCccEEEeecccccCcC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT-KLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-~l~~i~~lVvDEad~lld~ 329 (330)
...++++..++||.....+...+..+++||||||++|..++.+... .+.++.+|||||||++...
T Consensus 321 ~~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~ 386 (797)
T 4a2q_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (797)
T ss_dssp GGGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT
T ss_pred ccCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC
Confidence 8888999999999977766666777899999999999999987766 6889999999999998764
No 42
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.90 E-value=1.3e-23 Score=215.38 Aligned_cols=152 Identities=22% Similarity=0.295 Sum_probs=132.6
Q ss_pred CCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhh-hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 167 ~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~-~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
.+|.+++|++.+.+.+.+.||..|+|+|.++++. +.++++++++||||||||++|.++++.++.. ++.++||
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~-------~~~~il~ 80 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLK-------NGGKAIY 80 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTSCCBCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHH-------SCSEEEE
T ss_pred CcHHHcCCCHHHHHHHHhCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHH-------CCCeEEE
Confidence 5699999999999999999999999999999999 7899999999999999999999999988765 3679999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
++|||+||.|++..++++.. .++++..++|+...... .+ .+++|+|+||++|..++.+....++++.+|||||||.
T Consensus 81 i~P~r~La~q~~~~~~~~~~-~g~~v~~~~G~~~~~~~--~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~ 156 (715)
T 2va8_A 81 VTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDYDTDDA--WL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHY 156 (715)
T ss_dssp ECSCHHHHHHHHHHHGGGGG-GTCCEEECCSCSSSCCG--GG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGG
T ss_pred EeCcHHHHHHHHHHHHHhhc-CCCEEEEEeCCCCCchh--hc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhh
Confidence 99999999999999966543 47888888887654332 12 2589999999999999988766689999999999999
Q ss_pred cCcC
Q psy17644 326 MFDM 329 (330)
Q Consensus 326 lld~ 329 (330)
+.++
T Consensus 157 l~~~ 160 (715)
T 2va8_A 157 LNDP 160 (715)
T ss_dssp GGCT
T ss_pred cCCc
Confidence 8764
No 43
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.89 E-value=1.1e-23 Score=183.79 Aligned_cols=141 Identities=20% Similarity=0.210 Sum_probs=107.2
Q ss_pred CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHH-HHHHHHHhc
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQ-IYNEAKRFG 264 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Q-i~~~~~~l~ 264 (330)
....|+++|.++++.++++++++++++||+|||++|+++++.++...+. ...++++|||+||++|+.| +.+.+.++.
T Consensus 30 ~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~--~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHH--TTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhccc--ccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 4568999999999999999999999999999999999999987765321 1246789999999999999 777888886
Q ss_pred cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCC------CCCCCccEEEeecccccCcC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA------TKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~------~~l~~i~~lVvDEad~lld~ 329 (330)
.. ++++..+.|+.........+..+++|+|+||++|..++.... ..+.++.+|||||||+++..
T Consensus 108 ~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~ 177 (216)
T 3b6e_A 108 KK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE 177 (216)
T ss_dssp TT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC------
T ss_pred cc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC
Confidence 54 677777877765444333444468999999999999887643 45788999999999999754
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.89 E-value=1.4e-23 Score=222.93 Aligned_cols=136 Identities=20% Similarity=0.241 Sum_probs=118.9
Q ss_pred HHHH-HCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 180 KALR-KCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 180 ~~l~-~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
+.+. ..||. | |+|.++||.+++|+|++++|+||||||+ |++|++.++.. .++++|||+|||+||.|+++
T Consensus 48 ~~~~~~~g~~-p-~iQ~~ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~-------~~~~~lil~PtreLa~Q~~~ 117 (1054)
T 1gku_B 48 EFFRKCVGEP-R-AIQKMWAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL-------KGKRCYVIFPTSLLVIQAAE 117 (1054)
T ss_dssp HHHHTTTCSC-C-HHHHHHHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT-------TSCCEEEEESCHHHHHHHHH
T ss_pred HHHHHhcCCC-H-HHHHHHHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh-------cCCeEEEEeccHHHHHHHHH
Confidence 3443 36898 9 9999999999999999999999999998 99999988765 47899999999999999999
Q ss_pred HHHHhccCCCc----eEEEEECCCchHHH---HHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 259 EAKRFGKGYNL----SVVCCYGGGSKWDQ---SKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 259 ~~~~l~~~~~~----~~~~~~gg~~~~~~---~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
.+++++...++ ++.+++||.....+ ...+.. ++|+||||++|.+++.+ ++++.+|||||||+|++||
T Consensus 118 ~l~~l~~~~~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~~ 191 (1054)
T 1gku_B 118 TIRKYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKAS 191 (1054)
T ss_dssp HHHHHHTTTCCSGGGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTST
T ss_pred HHHHHHhhcCCCccceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhcc
Confidence 99999988888 88999999887663 344555 89999999999998765 6799999999999999854
No 45
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.89 E-value=6.9e-24 Score=217.14 Aligned_cols=151 Identities=21% Similarity=0.264 Sum_probs=128.3
Q ss_pred CCCCCC--CCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEE
Q psy17644 168 SFGHFG--FDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245 (330)
Q Consensus 168 ~f~~~~--l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLi 245 (330)
+|++++ |++.+.+.+++.||..|+|+|.++++.+++++++++++|||||||++|.++++.++.. ++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g~~~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~--------~~~~l~ 73 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIK--------GGKSLY 73 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC---CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHT--------TCCEEE
T ss_pred chhhhhhccCHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHh--------CCcEEE
Confidence 477888 9999999999999999999999999999999999999999999999999999988653 578999
Q ss_pred EcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 246 LAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 246 l~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
++|||+||.|++..++++. ..++++..++|+...... ....++|+|+||++|..++.+....++++.+|||||||.
T Consensus 74 i~P~r~La~q~~~~~~~~~-~~g~~v~~~~G~~~~~~~---~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~ 149 (702)
T 2p6r_A 74 VVPLRALAGEKYESFKKWE-KIGLRIGISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHL 149 (702)
T ss_dssp EESSHHHHHHHHHHHTTTT-TTTCCEEEECSSCBCCSS---CSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGG
T ss_pred EeCcHHHHHHHHHHHHHHH-hcCCEEEEEeCCCCcchh---hccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeee
Confidence 9999999999999997654 347888888887654332 113689999999999999988766688999999999999
Q ss_pred cCcCC
Q psy17644 326 MFDMG 330 (330)
Q Consensus 326 lld~G 330 (330)
|.+++
T Consensus 150 l~~~~ 154 (702)
T 2p6r_A 150 LDSEK 154 (702)
T ss_dssp GGCTT
T ss_pred cCCCC
Confidence 98753
No 46
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.89 E-value=3.4e-23 Score=210.84 Aligned_cols=133 Identities=20% Similarity=0.225 Sum_probs=116.1
Q ss_pred HCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 184 KCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 184 ~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..|+ .||++|..++|.++.|+ |+.++||+|||++|+||++.+.+. +..|+||+||++||.|+++++..+
T Consensus 107 ~lG~-rP~~VQ~~~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~--------g~~v~VvTpTreLA~Qdae~m~~l 175 (922)
T 1nkt_A 107 VLDQ-RPFDVQVMGAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA--------GNGVHIVTVNDYLAKRDSEWMGRV 175 (922)
T ss_dssp HHSC-CCCHHHHHHHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT--------TSCEEEEESSHHHHHHHHHHHHHH
T ss_pred HcCC-CCCHHHHHHHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh--------CCCeEEEeCCHHHHHHHHHHHHHH
Confidence 4687 99999999999999998 999999999999999999866553 568999999999999999999999
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcC------CCCCCCccEEEeecccccC-cC
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMG------ATKLNRVTFLVLDEADRMF-DM 329 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~------~~~l~~i~~lVvDEad~ll-d~ 329 (330)
+..+|+++.+++||.+...... ..+|+|+||||++| ++++..+ ...++.+.++||||||+|| |+
T Consensus 176 ~~~lGLsv~~i~gg~~~~~r~~--~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDe 247 (922)
T 1nkt_A 176 HRFLGLQVGVILATMTPDERRV--AYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDE 247 (922)
T ss_dssp HHHTTCCEEECCTTCCHHHHHH--HHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTG
T ss_pred HhhcCCeEEEEeCCCCHHHHHH--hcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhc
Confidence 9999999999999988654333 33689999999999 8888654 3457899999999999998 54
No 47
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.88 E-value=8.1e-23 Score=217.47 Aligned_cols=132 Identities=20% Similarity=0.199 Sum_probs=116.0
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|| .|||+|.++||.+++|+|++++|+||||||++|+++++..+ ..++++|||+|||+||.|+++.+++|+
T Consensus 75 ~gf-~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~--------~~~~~~Lil~PtreLa~Q~~~~l~~l~ 145 (1104)
T 4ddu_A 75 FGK-DLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA--------RKGKKSALVFPTVTLVKQTLERLQKLA 145 (1104)
T ss_dssp SSS-CCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH--------TTTCCEEEEESSHHHHHHHHHHHHTTS
T ss_pred cCC-CCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH--------hcCCeEEEEechHHHHHHHHHHHHHhh
Confidence 566 69999999999999999999999999999998888877765 257899999999999999999999988
Q ss_pred cCCCceEEEEECCCch---HHHHHHHhCC-CeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 265 KGYNLSVVCCYGGGSK---WDQSKALELG-AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~---~~~~~~l~~~-~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
..++++..++||... ..+...+..+ ++||||||++|.+++.. ..++++.+|||||||+++.
T Consensus 146 -~~~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 146 -DEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp -CTTSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTT
T ss_pred -CCCCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCcccc
Confidence 778999999999987 6666777776 99999999999888764 5578999999999976553
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.88 E-value=7.3e-23 Score=215.41 Aligned_cols=142 Identities=22% Similarity=0.199 Sum_probs=118.4
Q ss_pred CCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 185 CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.++..|+|+|.++++.+++|++++++++||+|||++|++|++.++...+. ..++++|||+||++|+.|++..+++++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~---~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPA---GRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCS---SCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccc---cCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 36788999999999999999999999999999999999999887755321 237889999999999999999999999
Q ss_pred cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC-CCCCccEEEeecccccCcC
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT-KLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~-~l~~i~~lVvDEad~lld~ 329 (330)
...++++..++|+.....+...+..+++|+|+||++|..++.+... .+.++.+|||||||++...
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC
Confidence 8888999999999876665555556789999999999999987766 6889999999999998764
No 49
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.88 E-value=2.5e-22 Score=204.05 Aligned_cols=131 Identities=17% Similarity=0.168 Sum_probs=115.1
Q ss_pred HCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 184 KCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 184 ~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..|+ .||++|..++|.+++|+ |+.++||+|||++|++|++.+.+. +..|+||+||++||.|++..+..+
T Consensus 75 ~lG~-~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~--------G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 75 YLGM-RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT--------GKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HTCC-CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT--------CSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HhCC-CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHh--------CCCEEEEeCCHHHHHHHHHHHHHH
Confidence 3688 99999999999999998 999999999999999999766543 568999999999999999999999
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHH-HHHHHcCC------CCCC---CccEEEeecccccC
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI-IDMVKMGA------TKLN---RVTFLVLDEADRMF 327 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L-~~~l~~~~------~~l~---~i~~lVvDEad~ll 327 (330)
+..+++++.+++||.+..... ...+++|+||||++| ++++..+. ..++ .+.++||||||+||
T Consensus 144 ~~~lGLsv~~i~Gg~~~~~r~--~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 144 YRGLGLSVGVIQHASTPAERR--KAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHTTTCCEEECCTTCCHHHHH--HHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHhcCCeEEEEeCCCCHHHHH--HHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 999999999999998854433 334689999999999 89887653 3477 89999999999998
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.85 E-value=3.7e-21 Score=211.74 Aligned_cols=147 Identities=21% Similarity=0.260 Sum_probs=122.3
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHHhhhhhcC-CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQAVPAALS-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~-g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L 252 (330)
|+....+++...+|..++|+|.++++.++. +++++++||||||||++|.+|+++++... .+.++|||+|||+|
T Consensus 911 L~~~~~e~l~~~~f~~fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~------~~~kavyi~P~raL 984 (1724)
T 4f92_B 911 LRNSAFESLYQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQS------SEGRCVYITPMEAL 984 (1724)
T ss_dssp SCCHHHHTTTTTTCSBCCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHC------TTCCEEEECSCHHH
T ss_pred ccCHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhC------CCCEEEEEcChHHH
Confidence 556677788888899999999999999975 56899999999999999999999998764 46789999999999
Q ss_pred HHHHHHHHHH-hccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC--CCCCccEEEeecccccCcC
Q psy17644 253 SQQIYNEAKR-FGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT--KLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 253 a~Qi~~~~~~-l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--~l~~i~~lVvDEad~lld~ 329 (330)
|.|++..+++ |+...++++..++|+..... +.+ .+++||||||++|..+++++.. .+++|.+||+||+|+|.+.
T Consensus 985 a~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~--~~~-~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~ 1061 (1724)
T 4f92_B 985 AEQVYMDWYEKFQDRLNKKVVLLTGETSTDL--KLL-GKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE 1061 (1724)
T ss_dssp HHHHHHHHHHHHTTTSCCCEEECCSCHHHHH--HHH-HHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST
T ss_pred HHHHHHHHHHHhchhcCCEEEEEECCCCcch--hhc-CCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC
Confidence 9999999875 66667889888888654332 222 3479999999999888876543 3789999999999988763
No 51
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.85 E-value=9.6e-22 Score=200.67 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=111.8
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHH-HHHHHHhccC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQI-YNEAKRFGKG 266 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi-~~~~~~l~~~ 266 (330)
..|+|+|.++++.+++|++++++++||+|||++|++|++.++...+. ...+.++|||+||++|+.|+ +..+++++..
T Consensus 6 ~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~--~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKK--ASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHH--HTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccc--cCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 46999999999999999999999999999999999999988876421 12347899999999999999 9999998765
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHH------HcCCCCCCCccEEEeecccccCc
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMV------KMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l------~~~~~~l~~i~~lVvDEad~lld 328 (330)
++++..++|+.........+...++|||+||++|...+ ......+..+.+|||||||++..
T Consensus 84 -~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~ 150 (699)
T 4gl2_A 84 -WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 150 (699)
T ss_dssp -TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBT
T ss_pred -CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCc
Confidence 57888888887765555555567899999999999988 44456788999999999999853
No 52
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.84 E-value=1.8e-20 Score=192.77 Aligned_cols=136 Identities=20% Similarity=0.271 Sum_probs=115.5
Q ss_pred HHHHHHHHCCCCCCCHHHHHhhhhhcCC------CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q psy17644 177 VLMKALRKCEYTSPTPIQAQAVPAALSG------RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 177 ~l~~~l~~~~~~~pt~iQ~~~i~~~~~g------~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr 250 (330)
.+...+...+| .||++|.++|+.++++ ++++++|+||||||++|++|++..+.. +.++|||+||+
T Consensus 357 ~~~~~~~~lpf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~--------g~qvlvlaPtr 427 (780)
T 1gm5_A 357 LAEEFIKSLPF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA--------GFQTAFMVPTS 427 (780)
T ss_dssp HHHHHHHHSSS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH--------TSCEEEECSCH
T ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc--------CCeEEEEeCcH
Confidence 34444567888 8999999999998865 699999999999999999999988743 68999999999
Q ss_pred HHHHHHHHHHHHhccCCCceEEEEECCCchHHH---HHHHhCC-CeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 251 ELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ---SKALELG-AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 251 ~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---~~~l~~~-~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+||.|+++.+++++...++++..++|+...... ...+..+ ++|+|+||+.|.. ...+.++.+|||||||++
T Consensus 428 ~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~ 502 (780)
T 1gm5_A 428 ILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRF 502 (780)
T ss_dssp HHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchh
Confidence 999999999999998889999999999876553 3334444 8999999987754 356889999999999996
No 53
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.84 E-value=5.4e-20 Score=177.55 Aligned_cols=131 Identities=27% Similarity=0.266 Sum_probs=113.3
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.|+|+|.++++.++.+ ++++.++||+|||++++++++.++.. .+.++|||+||++|+.|+.+.+.+++...+
T Consensus 9 ~l~~~Q~~~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~~-------~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 9 QPRIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTK-------YGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp CCCHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHH-------SCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CccHHHHHHHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHhc-------CCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 6899999999999998 99999999999999999999887762 467899999999999999999999975445
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
.++..+.|+.......... .+++|+|+||+.|...+.+....+.++.+|||||||++..
T Consensus 81 ~~v~~~~g~~~~~~~~~~~-~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~ 139 (494)
T 1wp9_A 81 EKIVALTGEKSPEERSKAW-ARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG 139 (494)
T ss_dssp GGEEEECSCSCHHHHHHHH-HHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST
T ss_pred hheEEeeCCcchhhhhhhc-cCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC
Confidence 5888888887766543333 3579999999999999988777889999999999999874
No 54
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.83 E-value=1.3e-20 Score=198.91 Aligned_cols=125 Identities=22% Similarity=0.231 Sum_probs=109.7
Q ss_pred CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
+| .|+|+|.++++.+.+|++++++++||||||++|+++++..+. .+.++||++||++|+.|++..+.+++.
T Consensus 84 ~f-~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~--------~g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PF-TLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLK--------NKQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SS-CCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHH--------TTCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CC-CCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhc--------cCCeEEEECChHHHHHHHHHHHHHHhC
Confidence 45 499999999999999999999999999999999999887763 368999999999999999999998765
Q ss_pred CCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
.+..++|+.... ..++|+|+||++|..++.++...++++.+|||||||+|.+++
T Consensus 155 ----~vglltGd~~~~-------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~ 208 (1010)
T 2xgj_A 155 ----DVGLMTGDITIN-------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKE 208 (1010)
T ss_dssp ----CEEEECSSCEEC-------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTT
T ss_pred ----CEEEEeCCCccC-------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccc
Confidence 566677776543 257999999999999998887888999999999999998864
No 55
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.83 E-value=1.3e-20 Score=207.38 Aligned_cols=140 Identities=24% Similarity=0.280 Sum_probs=117.3
Q ss_pred CCCCCCHHHHHhhhhhc-CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCC---CCCCCCeEEEEcccHHHHHHHHHHHH
Q psy17644 186 EYTSPTPIQAQAVPAAL-SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL---EPGDGPMGLILAPTRELSQQIYNEAK 261 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~-~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~---~~~~~~~vLil~Ptr~La~Qi~~~~~ 261 (330)
||..++++|++++|.++ +++|++++||||||||++|.+++++.+.+.... ....+.++|||+|||+||.|+++.++
T Consensus 76 g~~~ln~iQs~~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 76 GFKTLNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp TCSBCCHHHHHTHHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 78999999999999987 578999999999999999999999999875432 23457899999999999999999999
Q ss_pred HhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCC--CCCCccEEEeecccccCc
Q psy17644 262 RFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT--KLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 262 ~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~--~l~~i~~lVvDEad~lld 328 (330)
+.....|+++..++|+...... ....++||||||++|..++++... .++.|++|||||+|.|-|
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~---~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d 221 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKE---EISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD 221 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCT---TGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS
T ss_pred HHHhhCCCEEEEEECCCCCCcc---ccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC
Confidence 9888889999999998764322 123589999999999777765433 378999999999997753
No 56
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.82 E-value=2.1e-20 Score=197.38 Aligned_cols=125 Identities=20% Similarity=0.212 Sum_probs=109.5
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.|+|+|.++|+.+++|++++++++||||||++|+++++..+. .++++||++||++|+.|+++.+++++. +
T Consensus 39 ~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~--------~g~~vlvl~PtraLa~Q~~~~l~~~~~--~ 108 (997)
T 4a4z_A 39 ELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR--------NMTKTIYTSPIKALSNQKFRDFKETFD--D 108 (997)
T ss_dssp CCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH--------TTCEEEEEESCGGGHHHHHHHHHTTC----
T ss_pred CCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh--------cCCeEEEEeCCHHHHHHHHHHHHHHcC--C
Confidence 589999999999999999999999999999999998877643 468999999999999999999998754 5
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
+.+..++|+.... ..++|+|+||++|..++.+....+.++.+|||||||++.+||
T Consensus 109 ~~v~~l~G~~~~~-------~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~ 163 (997)
T 4a4z_A 109 VNIGLITGDVQIN-------PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQD 163 (997)
T ss_dssp CCEEEECSSCEEC-------TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTC
T ss_pred CeEEEEeCCCccC-------CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccc
Confidence 6788888877543 347999999999999998877778999999999999999875
No 57
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.81 E-value=3.1e-20 Score=169.55 Aligned_cols=127 Identities=21% Similarity=0.148 Sum_probs=104.0
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
..|+++|.++++.++.+++.+++++||+|||+++++++..++.. ...++|||+||++|+.|+++.+++++...
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~~lil~Pt~~L~~q~~~~l~~~~~~~ 184 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLFS 184 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHH-------CSSEEEEECSSHHHHHHHHHHHHHHTSCC
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHc-------CCCeEEEEECCHHHHHHHHHHHHHhcccc
Confidence 37999999999999988899999999999999998887776543 23489999999999999999999998766
Q ss_pred CceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 268 NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 268 ~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+..+..++||..... ....+++|+|+||+.+... ....+.++.+|||||||++.
T Consensus 185 ~~~~~~~~~~~~~~~---~~~~~~~I~v~T~~~l~~~---~~~~~~~~~~vIiDEaH~~~ 238 (282)
T 1rif_A 185 HAMIKKIGGGASKDD---KYKNDAPVVVGTWQTVVKQ---PKEWFSQFGMMMNDECHLAT 238 (282)
T ss_dssp GGGEEECSTTCSSTT---CCCTTCSEEEECHHHHTTS---CGGGGGGEEEEEEETGGGCC
T ss_pred cceEEEEeCCCcchh---hhccCCcEEEEchHHHHhh---HHHHHhhCCEEEEECCccCC
Confidence 778888888876532 1224589999999877533 22346789999999999985
No 58
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=161.75 Aligned_cols=139 Identities=14% Similarity=0.095 Sum_probs=104.4
Q ss_pred HHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 180 KALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 180 ~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
..+.......++++|.++++.+..|++++++|+||||||.+|.++++.++..... ..++++|+++|||+|+.|+.+.
T Consensus 52 ~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~---~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 52 AILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR---AAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC---GGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC---CCceEEEEeccchHHHHHHHHH
Confidence 3333334445789999999999999999999999999999999999888765432 2356899999999999999988
Q ss_pred HHHhcc-CCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc-CcC
Q psy17644 260 AKRFGK-GYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM-FDM 329 (330)
Q Consensus 260 ~~~l~~-~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l-ld~ 329 (330)
+..... ..+..+........ .....+++|+||||++|.+++.+ .++++++|||||||++ +++
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~-----~~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~ 192 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFES-----ILPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINT 192 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEE-----ECCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHH
T ss_pred HHHHhccccCceEEEeechhh-----ccCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcch
Confidence 776433 33444433222111 11123579999999999999876 4889999999999986 543
No 59
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.79 E-value=1.9e-19 Score=177.18 Aligned_cols=128 Identities=21% Similarity=0.147 Sum_probs=108.0
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccC
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG 266 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~ 266 (330)
...|+|+|..+++.++++++++++++||+|||++|+++++..+.. .++++|||+||++|+.|+++.+++++..
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~-------~~~~vlvl~P~~~L~~Q~~~~~~~~~~~ 183 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLEN-------YEGKILIIVPTTALTTQMADDFVDYRLF 183 (510)
T ss_dssp EECCCHHHHHHHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHH-------CSSEEEEEESSHHHHHHHHHHHHHTTSS
T ss_pred CCCCCHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhC-------CCCeEEEEECcHHHHHHHHHHHHHhhcC
Confidence 347999999999999999999999999999999999988877653 2459999999999999999999999776
Q ss_pred CCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 267 YNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 267 ~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
.+..+..++||.....+ +..+++|+|+||+.|.. .....+.++.+|||||||++.
T Consensus 184 ~~~~v~~~~~~~~~~~~---~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~ 238 (510)
T 2oca_A 184 SHAMIKKIGGGASKDDK---YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLAT 238 (510)
T ss_dssp CGGGEEECGGGCCTTGG---GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCC
T ss_pred CccceEEEecCCccccc---cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCC
Confidence 67788888888776554 45568999999997653 223457789999999999985
No 60
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.77 E-value=5e-18 Score=181.63 Aligned_cols=141 Identities=23% Similarity=0.282 Sum_probs=114.2
Q ss_pred CCCCHHHHHHHHHC-CCCCCCHHHHHhhhhhcC----CC--cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEE
Q psy17644 172 FGFDEVLMKALRKC-EYTSPTPIQAQAVPAALS----GR--DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244 (330)
Q Consensus 172 ~~l~~~l~~~l~~~-~~~~pt~iQ~~~i~~~~~----g~--d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vL 244 (330)
++++....+.+... +| .|||+|.++++.++. |+ |++++++||+|||.+|+++++..+. .++++|
T Consensus 586 ~~~~~~~~~~~~~~f~~-~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~--------~g~~vl 656 (1151)
T 2eyq_A 586 FKHDREQYQLFCDSFPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD--------NHKQVA 656 (1151)
T ss_dssp CCCCHHHHHHHHHTCCS-CCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT--------TTCEEE
T ss_pred CCCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH--------hCCeEE
Confidence 45666777776554 55 579999999999885 66 9999999999999999999887653 367999
Q ss_pred EEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH---HHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 245 ILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ---SKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 245 il~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
||+||++||.|+++.+++++...++++..+.|....... ...+.. .++|+|+||..|. ....++++.+|||
T Consensus 657 vlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIi 731 (1151)
T 2eyq_A 657 VLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIV 731 (1151)
T ss_dssp EECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEE
T ss_pred EEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEE
Confidence 999999999999999998888778888888876665443 333444 4899999997663 3456889999999
Q ss_pred eccccc
Q psy17644 321 DEADRM 326 (330)
Q Consensus 321 DEad~l 326 (330)
||||++
T Consensus 732 DEaH~~ 737 (1151)
T 2eyq_A 732 DEEHRF 737 (1151)
T ss_dssp ESGGGS
T ss_pred echHhc
Confidence 999995
No 61
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.77 E-value=1.9e-18 Score=172.12 Aligned_cols=129 Identities=19% Similarity=0.069 Sum_probs=103.6
Q ss_pred CCCHHHHHhhhh----hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 189 SPTPIQAQAVPA----ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 189 ~pt~iQ~~~i~~----~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|+|.|.+++.. +..|+++++.||||+|||++|++|++.. ++++||++||++|+.|+.+.+..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~-----------~~~v~i~~pt~~l~~q~~~~~~~l~ 71 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEFYPIYRDLTKIR 71 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH-----------CSEEEEEESSGGGHHHHHHHHTTCC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhC-----------CCeEEEEcCCHHHHHHHHHHHHHHh
Confidence 689999997765 4589999999999999999999999972 6899999999999999999999998
Q ss_pred cCCCceEEEEECCCch---------------------------------HH------------------HHHHHhCCCeE
Q psy17644 265 KGYNLSVVCCYGGGSK---------------------------------WD------------------QSKALELGAEI 293 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~---------------------------------~~------------------~~~~l~~~~dI 293 (330)
+..++++..+.|+... +. ..+....+++|
T Consensus 72 ~~~~~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adI 151 (551)
T 3crv_A 72 EKRNITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADV 151 (551)
T ss_dssp CSSCCCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSE
T ss_pred hhcCccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCE
Confidence 7778888777663210 11 12333457899
Q ss_pred EEEChHHHHHHHHcCCCCC-CCccEEEeecccccCc
Q psy17644 294 VVGTPGRIIDMVKMGATKL-NRVTFLVLDEADRMFD 328 (330)
Q Consensus 294 iV~TP~~L~~~l~~~~~~l-~~i~~lVvDEad~lld 328 (330)
||+||..|++...+....+ ....+|||||||+|.+
T Consensus 152 VV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 152 IALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999999998765443333 4678999999999986
No 62
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.75 E-value=1.1e-18 Score=169.81 Aligned_cols=121 Identities=15% Similarity=0.121 Sum_probs=94.8
Q ss_pred CCCCCCHHHHHhhhhhcCCCcE-EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 186 EYTSPTPIQAQAVPAALSGRDI-IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~~g~d~-i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
|+..|+|+|. +||.+++++++ +++++||||||++|++|++.++.. .++++||++|||+||.|++..+..+
T Consensus 1 G~~q~~~iq~-~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~- 71 (451)
T 2jlq_A 1 GSAMGEPDYE-VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL-------RRLRTLILAPTRVVAAEMEEALRGL- 71 (451)
T ss_dssp CCCCCSCCCC-CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTS-
T ss_pred CCCCCCCcHH-HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh-------cCCcEEEECCCHHHHHHHHHHhcCc-
Confidence 6788999985 79999999988 888999999999999999988776 4689999999999999999987532
Q ss_pred cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 265 KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 265 ~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
.+....+.... ....+..|.++|++.|...+.+. ..++++.+|||||||++
T Consensus 72 -----~v~~~~~~~~~-----~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 122 (451)
T 2jlq_A 72 -----PIRYQTPAVKS-----DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 122 (451)
T ss_dssp -----CEEECCTTCSC-----CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC
T ss_pred -----eeeeeeccccc-----cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC
Confidence 22211111110 11234579999999998877643 55889999999999986
No 63
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.74 E-value=9.3e-18 Score=163.56 Aligned_cols=115 Identities=23% Similarity=0.124 Sum_probs=96.7
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
..|+|+|.++++.++.+++++++++||+|||++|++++... +.++|||+||++|+.|+++.+.+|
T Consensus 92 ~~l~~~Q~~ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~-----------~~~~Lvl~P~~~L~~Q~~~~~~~~---- 156 (472)
T 2fwr_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (472)
T ss_dssp CCBCHHHHHHHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH-----------CSCEEEEESSHHHHHHHHHHGGGG----
T ss_pred CCcCHHHHHHHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEECCHHHHHHHHHHHHhC----
Confidence 47999999999999999999999999999999999987754 468999999999999999999885
Q ss_pred Cce-EEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 268 NLS-VVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 268 ~~~-~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
++. +..+.|+... .++|+|+||+.+...+... ..++.+|||||||++...
T Consensus 157 ~~~~v~~~~g~~~~---------~~~Ivv~T~~~l~~~~~~~---~~~~~liIvDEaH~~~~~ 207 (472)
T 2fwr_A 157 GEEYVGEFSGRIKE---------LKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAE 207 (472)
T ss_dssp CGGGEEEBSSSCBC---------CCSEEEEEHHHHHHTHHHH---TTTCSEEEEETGGGTTST
T ss_pred CCcceEEECCCcCC---------cCCEEEEEcHHHHHHHHHh---cCCCCEEEEECCcCCCCh
Confidence 566 6666665542 4799999999998766421 246899999999998754
No 64
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=4.1e-17 Score=145.45 Aligned_cols=115 Identities=23% Similarity=0.113 Sum_probs=94.2
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
..|+++|..++..++.+++++++++||+|||.+++.++... +.++||++||++|+.|+.+.+.+|
T Consensus 92 ~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-----------~~~~liv~P~~~L~~q~~~~~~~~---- 156 (237)
T 2fz4_A 92 ISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVPTLALAEQWKERLGIF---- 156 (237)
T ss_dssp CCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-----------CSCEEEEESSHHHHHHHHHHHGGG----
T ss_pred CCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-----------CCCEEEEeCCHHHHHHHHHHHHhC----
Confidence 57999999999999999999999999999999988776542 467999999999999999999885
Q ss_pred Cce-EEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcC
Q psy17644 268 NLS-VVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329 (330)
Q Consensus 268 ~~~-~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~ 329 (330)
++. +..+.|+.. ...+|+|+||+.+....... ..++.+|||||||++.+.
T Consensus 157 ~~~~v~~~~g~~~---------~~~~i~v~T~~~l~~~~~~~---~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 157 GEEYVGEFSGRIK---------ELKPLTVSTYDSAYVNAEKL---GNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp CGGGEEEESSSCB---------CCCSEEEEEHHHHHHTHHHH---TTTCSEEEEECSSCCCTT
T ss_pred CCCeEEEEeCCCC---------CcCCEEEEeHHHHHhhHHHh---cccCCEEEEECCccCCCh
Confidence 566 666665543 24799999999988765421 246899999999998753
No 65
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.70 E-value=3.3e-18 Score=172.30 Aligned_cols=135 Identities=16% Similarity=0.107 Sum_probs=97.4
Q ss_pred CCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 172 FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 172 ~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
+++++.+.+++... ...|+|+|++++|.+++|+|++++|+||||||++|++|++.++.. .++++|||+|||+
T Consensus 155 l~~~~~~~~~l~~~-~~~~lpiq~~~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~-------~~~~vLvl~Ptre 226 (618)
T 2whx_A 155 VTKSGDYVSAITQA-ERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK-------RRLRTLILAPTRV 226 (618)
T ss_dssp -------CEECBCC-CCCCCCCCCCCGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHH
T ss_pred ccchHHHHHHHhhc-cccCCCccccCHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCeEEEEcChHH
Confidence 44555555554432 478999999999999999999999999999999999999999876 3689999999999
Q ss_pred HHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 252 LSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 252 La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
||.|+++.++.+ .+. ..++... .....+.-|.++|.+.|...+... ..++++++|||||||+|
T Consensus 227 La~Qi~~~l~~~------~v~-~~~~~l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~ 289 (618)
T 2whx_A 227 VAAEMEEALRGL------PIR-YQTPAVK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT 289 (618)
T ss_dssp HHHHHHHHTTTS------CEE-ECCTTSS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC
T ss_pred HHHHHHHHhcCC------cee-Eecccce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC
Confidence 999999887632 222 1111100 001123467778888887765543 45889999999999998
No 66
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.69 E-value=1.1e-17 Score=168.29 Aligned_cols=114 Identities=17% Similarity=0.106 Sum_probs=91.2
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.+.+.|..+++.+..+++++++|+||||||++|.+|++. .+.++||++|||+||.|+++.+.+.. +
T Consensus 217 P~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~-----------~g~~vLVl~PTReLA~Qia~~l~~~~---g 282 (666)
T 3o8b_A 217 PVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAA-----------QGYKVLVLNPSVAATLGFGAYMSKAH---G 282 (666)
T ss_dssp CSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHH-----------TTCCEEEEESCHHHHHHHHHHHHHHH---S
T ss_pred CcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHH-----------CCCeEEEEcchHHHHHHHHHHHHHHh---C
Confidence 344566666667778899999999999999999998875 25689999999999999998776553 3
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
..+...+|+.. +..+++|+|+||++| +.+....++++++|||||||.+
T Consensus 283 ~~vg~~vG~~~-------~~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~l 330 (666)
T 3o8b_A 283 IDPNIRTGVRT-------ITTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHST 330 (666)
T ss_dssp CCCEEECSSCE-------ECCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTCC
T ss_pred CCeeEEECcEe-------ccCCCCEEEECcHHH---HhCCCcccCcccEEEEccchhc
Confidence 45566677654 355689999999998 4566777889999999999654
No 67
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.68 E-value=3.6e-17 Score=162.55 Aligned_cols=127 Identities=19% Similarity=0.139 Sum_probs=88.5
Q ss_pred CCCCCCCHHHHHhhhh----hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 185 CEYTSPTPIQAQAVPA----ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 185 ~~~~~pt~iQ~~~i~~----~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
.|| .|+|+|.+++.. +..|+++++.+|||+|||++|++|++.+ ++++||++||++|+.|+++.+
T Consensus 4 ~~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~-----------~~~~~~~~~t~~l~~q~~~~~ 71 (540)
T 2vl7_A 4 LKL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQL-----------KKKVLIFTRTHSQLDSIYKNA 71 (540)
T ss_dssp ------CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH-----------TCEEEEEESCHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC-----------CCcEEEEcCCHHHHHHHHHHH
Confidence 356 799999998654 4589999999999999999999999764 579999999999999999988
Q ss_pred HHhccCCCceEEEEECCCc-----------------------------------------------hHHHHHHHhCCCeE
Q psy17644 261 KRFGKGYNLSVVCCYGGGS-----------------------------------------------KWDQSKALELGAEI 293 (330)
Q Consensus 261 ~~l~~~~~~~~~~~~gg~~-----------------------------------------------~~~~~~~l~~~~dI 293 (330)
.++ ++++..+.|... .....+....+++|
T Consensus 72 ~~l----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adi 147 (540)
T 2vl7_A 72 KLL----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDV 147 (540)
T ss_dssp GGG----TCCEEEC---------------------------------------------------------CTTGGGCSE
T ss_pred Hhc----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCE
Confidence 875 333333332110 00011112335899
Q ss_pred EEEChHHHHHHHHcCCC-------CCCCccEEEeecccccC
Q psy17644 294 VVGTPGRIIDMVKMGAT-------KLNRVTFLVLDEADRMF 327 (330)
Q Consensus 294 iV~TP~~L~~~l~~~~~-------~l~~i~~lVvDEad~ll 327 (330)
||+|+..|++....+.. .+....+|||||||+|.
T Consensus 148 VV~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 148 IAMTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EEEETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EEEChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 99999999885432211 24577899999999994
No 68
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.63 E-value=4.7e-16 Score=164.01 Aligned_cols=140 Identities=19% Similarity=0.184 Sum_probs=104.9
Q ss_pred HHHHHHHHHCC-------CCCCCHHHHHhhhhhcC--------------CCcEEEEcCCCChhHHHHHHHHHHHHHhcCC
Q psy17644 176 EVLMKALRKCE-------YTSPTPIQAQAVPAALS--------------GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKE 234 (330)
Q Consensus 176 ~~l~~~l~~~~-------~~~pt~iQ~~~i~~~~~--------------g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~ 234 (330)
..+++.+...- ...|+|+|..+++.++. +++++++++||||||+++ ++++.. +...
T Consensus 251 ~~ll~~l~~f~~~~~~~~~~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~l-l~~~- 327 (1038)
T 2w00_A 251 HTLLNVLVNYSVFDSSQTLLVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARL-ATEL- 327 (1038)
T ss_dssp HHHHHHHHHSEEECTTCCEEECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHH-HTTC-
T ss_pred HHHHHHHHhheeeccccccccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHH-HHhc-
Confidence 44555555432 23599999999999874 478999999999999997 556544 3321
Q ss_pred CCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh-CCCeEEEEChHHHHHHHHcCC--CC
Q psy17644 235 LEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE-LGAEIVVGTPGRIIDMVKMGA--TK 311 (330)
Q Consensus 235 ~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~--~~ 311 (330)
...+++||||||++|+.|+...+..++.. .+.++.+.......+. .+++|+|+||++|..++.... ..
T Consensus 328 ---~~~~rvLvlvpr~eL~~Q~~~~f~~f~~~------~v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~ 398 (1038)
T 2w00_A 328 ---DFIDKVFFVVDRKDLDYQTMKEYQRFSPD------SVNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPV 398 (1038)
T ss_dssp ---TTCCEEEEEECGGGCCHHHHHHHHTTSTT------CSSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGG
T ss_pred ---CCCceEEEEeCcHHHHHHHHHHHHHhccc------ccccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhc
Confidence 23479999999999999999999998653 1235555555556664 468999999999999886542 23
Q ss_pred CCCccEEEeecccccC
Q psy17644 312 LNRVTFLVLDEADRMF 327 (330)
Q Consensus 312 l~~i~~lVvDEad~ll 327 (330)
++.+.+||+||||++.
T Consensus 399 ~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 399 YNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp GGSCEEEEEESCCTTH
T ss_pred cccccEEEEEccchhc
Confidence 5678999999999975
No 69
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.63 E-value=1.3e-15 Score=156.96 Aligned_cols=152 Identities=16% Similarity=0.118 Sum_probs=110.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcC-CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCe
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALS-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPM 242 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~-g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~ 242 (330)
.++.+|..+++++.+.+.+...+ ..|+++|+++|+.++. +++++++|+||||||+ ++|++....... ...+++
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~-~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTt--llp~ll~~~~~~---~~~g~~ 142 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRR-ELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTT--QIPQFVLFDEMP---HLENTQ 142 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHT-TSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHH--HHHHHHHHHHCG---GGGTCE
T ss_pred CCCCCccccCCCHHHHHHHHHhh-cCChHHHHHHHHHHHhCCCeEEEECCCCCCHHH--HHHHHHHHhccc---cCCCce
Confidence 35678999999999999998887 7899999999998884 5679999999999997 566663222111 113678
Q ss_pred EEEEcccHHHHHHHHHHHHHhc-cCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEee
Q psy17644 243 GLILAPTRELSQQIYNEAKRFG-KGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLD 321 (330)
Q Consensus 243 vLil~Ptr~La~Qi~~~~~~l~-~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvD 321 (330)
++|++|||+||.|++..+.... ...+..+........ ......+|+|+||++|...+... ..+.++.+||||
T Consensus 143 ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~------~~~~~~~I~v~T~G~l~r~l~~~-~~l~~~~~lIlD 215 (773)
T 2xau_A 143 VACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFEN------KTSNKTILKYMTDGMLLREAMED-HDLSRYSCIILD 215 (773)
T ss_dssp EEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEE------ECCTTCSEEEEEHHHHHHHHHHS-TTCTTEEEEEEC
T ss_pred EEecCchHHHHHHHHHHHHHHhCCchhheecceecccc------ccCCCCCEEEECHHHHHHHHhhC-ccccCCCEEEec
Confidence 9999999999999998765543 222222221111111 01235799999999999877653 458899999999
Q ss_pred cccc-cCc
Q psy17644 322 EADR-MFD 328 (330)
Q Consensus 322 Ead~-lld 328 (330)
|||. +++
T Consensus 216 Eah~R~ld 223 (773)
T 2xau_A 216 EAHERTLA 223 (773)
T ss_dssp SGGGCCHH
T ss_pred Cccccccc
Confidence 9995 654
No 70
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.63 E-value=1.7e-16 Score=159.17 Aligned_cols=128 Identities=20% Similarity=0.171 Sum_probs=75.5
Q ss_pred CCCCHHHHHhhhhhcC----C-CcEEEEcCCCChhHHHHHHHHHHHHHhcC--CCCCCCCCeEEEEcccHHHHHHHH-HH
Q psy17644 188 TSPTPIQAQAVPAALS----G-RDIIGVAKTGSGKTGAFIWPMLVHIMDQK--ELEPGDGPMGLILAPTRELSQQIY-NE 259 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~----g-~d~i~~a~TGsGKT~a~llp~l~~i~~~~--~~~~~~~~~vLil~Ptr~La~Qi~-~~ 259 (330)
..|+|+|.++++.++. | ++++++++||+|||++++. ++..++... ......++++|||+||++|+.|++ +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~-~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQ-ISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHH-HHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3699999999999875 4 6689999999999998654 444454432 001124689999999999999999 77
Q ss_pred HHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHc----CCCCCCCccEEEeecccccCc
Q psy17644 260 AKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM----GATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 260 ~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~----~~~~l~~i~~lVvDEad~lld 328 (330)
++.++. .+..+.++ ....+++|+|+||++|...+.. ..+....+.+|||||||++..
T Consensus 256 ~~~~~~----~~~~~~~~--------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 256 FTPFGD----ARHKIEGG--------KVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp CTTTCS----SEEECCC----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHhcch----hhhhhhcc--------CCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 776643 33333332 1234689999999999887652 233467799999999999875
No 71
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.62 E-value=1.4e-16 Score=161.72 Aligned_cols=125 Identities=14% Similarity=0.140 Sum_probs=87.7
Q ss_pred HHCCCC-----CCCHHHH-----Hhhhhhc------CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 183 RKCEYT-----SPTPIQA-----QAVPAAL------SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 183 ~~~~~~-----~pt~iQ~-----~~i~~~~------~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
...||. .||++|+ .+||.++ +|+|++++++||||||++|++|++.++.. +++++|||
T Consensus 204 ~~~Gf~~~~~~~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~-------~~~~~lil 276 (673)
T 2wv9_A 204 YGNGVILGNGAYVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ-------KRLRTAVL 276 (673)
T ss_dssp EEEEEECSSSCEEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH-------TTCCEEEE
T ss_pred eeccccccCCCccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh-------CCCcEEEE
Confidence 345655 8999999 9999988 99999999999999999999999998765 46899999
Q ss_pred cccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 247 ~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+|||+||.|+++.++.+. +. . ..+ ... .....+.-+-+.+.+.+...+... ..++++.+|||||||+|
T Consensus 277 aPTr~La~Q~~~~l~~~~----i~--~-~~~-~l~---~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~ 344 (673)
T 2wv9_A 277 APTRVVAAEMAEALRGLP----VR--Y-LTP-AVQ---REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT 344 (673)
T ss_dssp ESSHHHHHHHHHHTTTSC----CE--E-CCC-------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC
T ss_pred ccHHHHHHHHHHHHhcCC----ee--e-ecc-ccc---ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc
Confidence 999999999999887652 22 1 110 000 000011223344555554433332 56889999999999998
No 72
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.59 E-value=1.1e-15 Score=148.94 Aligned_cols=110 Identities=15% Similarity=0.139 Sum_probs=80.3
Q ss_pred hhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEC
Q psy17644 197 AVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYG 276 (330)
Q Consensus 197 ~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~g 276 (330)
...++.++++++++++||||||++|++|++.+++. .++++|||+|||+||.|++..++.+ .+....+
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~-------~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~ 80 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ-------QRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTS 80 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEECSHHHHHHHHHHTTTS------CEEECC-
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh-------CCCcEEEECchHHHHHHHHHHhcCc------eEeEEec
Confidence 35556789999999999999999999999998875 4689999999999999999988632 2222111
Q ss_pred CCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccc
Q psy17644 277 GGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR 325 (330)
Q Consensus 277 g~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ 325 (330)
.... .-..+.-+.++|.+.+...+... ..++++.+|||||||+
T Consensus 81 ~~~~-----~~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~ 123 (459)
T 2z83_A 81 AVQR-----EHQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHF 123 (459)
T ss_dssp ------------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTC
T ss_pred cccc-----CCCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCcc
Confidence 1110 01223457788888887766543 5588999999999998
No 73
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.58 E-value=6.9e-17 Score=156.63 Aligned_cols=100 Identities=20% Similarity=0.248 Sum_probs=74.8
Q ss_pred hhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCc
Q psy17644 200 AALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGS 279 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~ 279 (330)
++++|+|++++++||||||++|++|++.++.. +++++|||+|||+||.|+++.++.+. + .. .++..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~-------~~~~~lil~Ptr~La~Q~~~~l~~~~----v--~~-~~~~~ 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECAR-------RRLRTLVLAPTRVVLSEMKEAFHGLD----V--KF-HTQAF 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTTTSC----E--EE-ESSCC
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHh-------cCCeEEEEcchHHHHHHHHHHHhcCC----e--EE-ecccc
Confidence 56789999999999999999999999998875 46899999999999999999887542 2 21 11110
Q ss_pred hHHHHHHHhCCCeEEEEChHHHHHHHH--------cCCCCCCCccEEEeeccccc
Q psy17644 280 KWDQSKALELGAEIVVGTPGRIIDMVK--------MGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 280 ~~~~~~~l~~~~dIiV~TP~~L~~~l~--------~~~~~l~~i~~lVvDEad~l 326 (330)
-+|+||+++.+++. .....++++.+|||||||+|
T Consensus 70 -------------~~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~ 111 (440)
T 1yks_A 70 -------------SAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL 111 (440)
T ss_dssp -------------CCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC
T ss_pred -------------eeccCCccceeeecccchhHhhhCcccccCccEEEEECcccc
Confidence 02566655433221 12345889999999999998
No 74
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.56 E-value=8.5e-15 Score=141.51 Aligned_cols=105 Identities=13% Similarity=0.138 Sum_probs=77.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD 282 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 282 (330)
.|++++++++||||||++|++|++.++.. +++++|||+||++||.|++..+. +..+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~-------~g~~~lvl~Pt~~La~Q~~~~~~------~~~v~~~~~~~~~-- 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK-------KRLRTVILAPTRVVASEMYEALR------GEPIRYMTPAVQS-- 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHTT------TSCEEEC--------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh-------CCCCEEEECcHHHHHHHHHHHhC------CCeEEEEecCccc--
Confidence 47899999999999999999999987765 46899999999999999998775 3344433332111
Q ss_pred HHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 283 QSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 283 ~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
.-..+.-+.+.|.+.+...+.. ...++++.+|||||||++
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~ 105 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL 105 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC
T ss_pred ---cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC
Confidence 1112345677888888776555 456889999999999997
No 75
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.54 E-value=1e-14 Score=146.93 Aligned_cols=82 Identities=18% Similarity=0.134 Sum_probs=68.9
Q ss_pred CCCHHHHHhhhh----hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 189 SPTPIQAQAVPA----ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 189 ~pt~iQ~~~i~~----~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|+|.|.+.+.. +.+|+++++.||||+|||++|++|++.++.. .+++++|++||++|+.|+++.+.++.
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~-------~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSE-------RKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHH-------HTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhh-------cCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 588999998864 4589999999999999999999999999865 36799999999999999999999987
Q ss_pred cCCCceEEEEECC
Q psy17644 265 KGYNLSVVCCYGG 277 (330)
Q Consensus 265 ~~~~~~~~~~~gg 277 (330)
...+++++.+.|+
T Consensus 76 ~~~~~~~~~l~gr 88 (620)
T 4a15_A 76 STMKIRAIPMQGR 88 (620)
T ss_dssp HHSCCCEEECCCH
T ss_pred hccCeEEEEEECC
Confidence 7666776666553
No 76
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.49 E-value=4.3e-14 Score=138.55 Aligned_cols=124 Identities=19% Similarity=0.188 Sum_probs=91.2
Q ss_pred CCCCHHHHHhhhhh----cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAA----LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~----~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..|+|+|.+++..+ ..++++|++.+||+|||++++. ++..+... ....++|||||+ .|+.||.++++++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~-----~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKE-----NELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHT-----TCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhc-----CCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 46899999999876 3688999999999999988654 44444432 134679999995 6899999999999
Q ss_pred ccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
+.. .++..+.|+... .....++|+|+||+.|..... .....+.+|||||||++..
T Consensus 109 ~~~--~~v~~~~g~~~~-----~~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn 163 (500)
T 1z63_A 109 APH--LRFAVFHEDRSK-----IKLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKN 163 (500)
T ss_dssp CTT--SCEEECSSSTTS-----CCGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSC
T ss_pred CCC--ceEEEEecCchh-----ccccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCC
Confidence 753 455555554421 112347999999999976443 2234689999999999864
No 77
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.45 E-value=5.6e-14 Score=142.45 Aligned_cols=111 Identities=17% Similarity=0.109 Sum_probs=79.6
Q ss_pred HHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q psy17644 194 QAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVC 273 (330)
Q Consensus 194 Q~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~ 273 (330)
|.......++|++++++||||||||+ +++..+... +.+||++|||+||.|+++.+..+ ++.+..
T Consensus 145 ~~~p~ar~l~rk~vlv~apTGSGKT~----~al~~l~~~--------~~gl~l~PtR~LA~Qi~~~l~~~----g~~v~l 208 (677)
T 3rc3_A 145 NWYPDARAMQRKIIFHSGPTNSGKTY----HAIQKYFSA--------KSGVYCGPLKLLAHEIFEKSNAA----GVPCDL 208 (677)
T ss_dssp GGCHHHHTSCCEEEEEECCTTSSHHH----HHHHHHHHS--------SSEEEEESSHHHHHHHHHHHHHT----TCCEEE
T ss_pred hhCHHHHhcCCCEEEEEcCCCCCHHH----HHHHHHHhc--------CCeEEEeCHHHHHHHHHHHHHhc----CCcEEE
Confidence 33334456789999999999999997 445555442 34599999999999999999886 567788
Q ss_pred EECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccCcCC
Q psy17644 274 CYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330 (330)
Q Consensus 274 ~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld~G 330 (330)
++|+....- ..-....+++++|++.+. ....+.+|||||||+|+++|
T Consensus 209 ltG~~~~iv--~TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~~ 255 (677)
T 3rc3_A 209 VTGEERVTV--QPNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDPA 255 (677)
T ss_dssp ECSSCEECC--STTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCTT
T ss_pred EECCeeEEe--cCCCcccceeEecHhHhh--------hcccCCEEEEecceecCCcc
Confidence 888765410 000112578888874332 24678999999999998764
No 78
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.35 E-value=6.8e-12 Score=127.06 Aligned_cols=134 Identities=18% Similarity=0.181 Sum_probs=94.3
Q ss_pred CCCHHHHHhhhhhc---------CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHH
Q psy17644 189 SPTPIQAQAVPAAL---------SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~---------~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~ 259 (330)
.++|+|.+++..+. .++..|+..+||.|||+..+..+.. ++.+.........++|||||+ .|+.||.++
T Consensus 55 ~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~-l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 55 VLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWT-LLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHH-HHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHH-HHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 58899999998873 5677899999999999877655544 333322111123568999997 899999999
Q ss_pred HHHhccCCCceEEEEECCCchHHH--HHH-HhC-----CCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 260 AKRFGKGYNLSVVCCYGGGSKWDQ--SKA-LEL-----GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 260 ~~~l~~~~~~~~~~~~gg~~~~~~--~~~-l~~-----~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+.+++.. .+.++.+++|...... ... +.. ..+|+|+|++.+..... .+....+.+||+||||++-
T Consensus 133 ~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~--~l~~~~~~~vI~DEaH~ik 205 (644)
T 1z3i_X 133 VGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAE--VLHKGKVGLVICDEGHRLK 205 (644)
T ss_dssp HHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTT--TTTTSCCCEEEETTGGGCC
T ss_pred HHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHH--HhhcCCccEEEEECceecC
Confidence 9999765 4566667776543221 111 111 37899999999876432 2334578899999999985
No 79
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.34 E-value=5.7e-13 Score=140.59 Aligned_cols=130 Identities=18% Similarity=0.059 Sum_probs=89.7
Q ss_pred CCCCHHHHHhhhhhcC--CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 188 TSPTPIQAQAVPAALS--GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~--g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
..|+|+|..++..++. +..+|++++||+|||++++..+...+... ...++|||||+ .|+.||..++.+..
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g------~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSG------AAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTS------SCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhC------CCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 4699999999988875 45889999999999999877665554331 23479999999 99999999997654
Q ss_pred CCCceEEEEECCCchHHHHHH---HhCCCeEEEEChHHHHHHHHc-CCCCCCCccEEEeecccccCc
Q psy17644 266 GYNLSVVCCYGGGSKWDQSKA---LELGAEIVVGTPGRIIDMVKM-GATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 266 ~~~~~~~~~~gg~~~~~~~~~---l~~~~dIiV~TP~~L~~~l~~-~~~~l~~i~~lVvDEad~lld 328 (330)
+..+..+.|+ ........ .....+|+|+|+..|...... .......+.+|||||||++-.
T Consensus 224 --~l~v~v~~~~-~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn 287 (968)
T 3dmq_A 224 --NLRFALFDDE-RYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVW 287 (968)
T ss_dssp --CCCCEECCHH-HHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCC
T ss_pred --CCCEEEEccc-hhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcC
Confidence 4454444332 22111111 112469999999888532110 011245789999999999863
No 80
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=4.2e-12 Score=131.63 Aligned_cols=130 Identities=16% Similarity=0.202 Sum_probs=93.9
Q ss_pred CCCCHHHHHhhhhhc----CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAAL----SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~----~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..++|+|..++..+. .++++|++.+||.|||+..+..+...+...+ ....+||||| ..|+.||..++.++
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~-----~~~~~LIV~P-~sll~qW~~E~~~~ 308 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARR-----QNGPHIIVVP-LSTMPAWLDTFEKW 308 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHS-----CCSCEEEECC-TTTHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcC-----CCCCEEEEEC-chHHHHHHHHHHHH
Confidence 468999999998765 8899999999999999876655443333321 2456899999 67889999999999
Q ss_pred ccCCCceEEEEECCCchHHHHHHH------------hCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 264 GKGYNLSVVCCYGGGSKWDQSKAL------------ELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 264 ~~~~~~~~~~~~gg~~~~~~~~~l------------~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+. ++.+.+++|+.......... ...++|+|+|++.+...... +....+.+|||||||++-
T Consensus 309 ~p--~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 309 AP--DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp ST--TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGC
T ss_pred CC--CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhc
Confidence 74 45666666655444333322 12478999999999764321 112367899999999984
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.30 E-value=1.3e-11 Score=123.85 Aligned_cols=128 Identities=19% Similarity=0.151 Sum_probs=102.3
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCC
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY 267 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~ 267 (330)
-.|+++|....-.+..|+ |+...||+|||+++.+|++...+. |..|.||+||+.||.|-++++..+...+
T Consensus 74 ~r~~dvQligg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~--------G~~vhVvT~ndyLA~rdae~m~~l~~~L 143 (822)
T 3jux_A 74 MRPFDVQVMGGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI--------GKGVHLVTVNDYLARRDALWMGPVYLFL 143 (822)
T ss_dssp CCCCHHHHHHHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT--------SSCEEEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCCcHHHHHHHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc--------CCceEEEeccHHHHHhHHHHHHHHHHHh
Confidence 468899999888888887 889999999999999999877654 6779999999999999999999999999
Q ss_pred CceEEEEECC--------------------------------------------------CchHHHHHHHhCCCeEEEEC
Q psy17644 268 NLSVVCCYGG--------------------------------------------------GSKWDQSKALELGAEIVVGT 297 (330)
Q Consensus 268 ~~~~~~~~gg--------------------------------------------------~~~~~~~~~l~~~~dIiV~T 297 (330)
|+++.+++.. .+.......+ .|||+.+|
T Consensus 144 glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY--~~DItYgT 221 (822)
T 3jux_A 144 GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY--LCDVTYGT 221 (822)
T ss_dssp TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH--HSSEEEEE
T ss_pred CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh--cCCCEEcc
Confidence 9999998872 1222222222 37999999
Q ss_pred hHHH-HHHHHcCC------CCCCCccEEEeecccccC
Q psy17644 298 PGRI-IDMVKMGA------TKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 298 P~~L-~~~l~~~~------~~l~~i~~lVvDEad~ll 327 (330)
..-| +++|+.+- .-...+.|.||||+|.||
T Consensus 222 n~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiL 258 (822)
T 3jux_A 222 NNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVL 258 (822)
T ss_dssp HHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHH
T ss_pred CcchhhHhHHhhccCCHHHhccCCCCeEEEeccccee
Confidence 9876 44554321 124678999999999886
No 82
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.87 E-value=1.1e-09 Score=110.07 Aligned_cols=72 Identities=22% Similarity=0.210 Sum_probs=59.4
Q ss_pred CHHHHHhhhhhcCCCcEEEEcCCCChhH--HHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 191 TPIQAQAVPAALSGRDIIGVAKTGSGKT--GAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~d~i~~a~TGsGKT--~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
++.|+.+++.++.++.+++.|++|+||| ++++++++..+.. ..+.++++++||+.+|.++.+.+..++..++
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~------~~~~~vll~APTg~AA~~L~e~~~~~~~~l~ 224 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMAD------GERCRIRLAAPTGKAAARLTESLGKALRQLP 224 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCS------SCCCCEEEEBSSHHHHHHHHHHHTHHHHHSS
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh------cCCCeEEEEeCChhHHHHHHHHHHHHHhcCC
Confidence 7899999999999999999999999999 6677777765321 2467899999999999999988877655443
No 83
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.26 E-value=1.8e-06 Score=87.25 Aligned_cols=68 Identities=24% Similarity=0.256 Sum_probs=54.0
Q ss_pred CCCCHHHHHhhhhhcCCCc-EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAALSGRD-IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d-~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..+.+-|.+|+..+++.++ .|+.||.|+|||.+ +..++.++++ .+.++|+++||...+.++...+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~t-i~~~I~~l~~-------~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKELAIIHGPPGTGKTTT-VVEIILQAVK-------QGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSSEEEEECCTTSCHHHH-HHHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCCceEEECCCCCCHHHH-HHHHHHHHHh-------CCCeEEEEcCchHHHHHHHHHHHhc
Confidence 3578999999999987776 46669999999955 4455556665 3678999999999999998888664
No 84
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.24 E-value=5.9e-06 Score=83.15 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=55.7
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
...+++.|..++..++...-+++.||+|+|||.+. ..++.++... .+.++|+++||...+.++...+.+.
T Consensus 178 ~~~ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp SCCCCHHHHHHHHHHHTCSEEEEECCTTSCHHHHH-HHHHHHHHTS------SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHHhcCCCeEEECCCCCCHHHHH-HHHHHHHHHc------CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 45688999999999888777888999999999543 3445555432 3578999999999999999888764
No 85
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.13 E-value=1.2e-05 Score=83.03 Aligned_cols=70 Identities=17% Similarity=0.188 Sum_probs=55.8
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
+..+++.|..++..++.+.-+++.||.|+|||.+. ..++.++... .+.++|+++||...+.++...+.+.
T Consensus 358 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i-~~~i~~l~~~------~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTS-ATIVYHLSKI------HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp SCCCCHHHHHHHHHHTTCSEEEEECSTTSSHHHHH-HHHHHHHHHH------HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHHhcCCCEEEECCCCCCHHHHH-HHHHHHHHhC------CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 45688999999999988777889999999999543 3344454442 2568999999999999999988775
No 86
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.09 E-value=1.6e-05 Score=82.11 Aligned_cols=70 Identities=20% Similarity=0.158 Sum_probs=55.7
Q ss_pred CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 187 ~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
...+++.|..++..++.+.-+++.|++|+|||.+. ..++.++... .+.++|+++||...+.++...+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti-~~~i~~l~~~------~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTS-ATIVYHLARQ------GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSSEEEEECCTTSCHHHHH-HHHHHHHHTT------CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCCeEEEEcCCCCCHHHHH-HHHHHHHHHc------CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 45688999999999888777889999999999543 3445555542 3578999999999999998887764
No 87
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.03 E-value=1.7e-05 Score=76.75 Aligned_cols=70 Identities=13% Similarity=0.150 Sum_probs=49.7
Q ss_pred HCCCCCCCHHHHHhhhhhcC----CC-cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 184 KCEYTSPTPIQAQAVPAALS----GR-DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 184 ~~~~~~pt~iQ~~~i~~~~~----g~-d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
-+.|..+++-|+.++..++. ++ .+++.|+.|||||. .+..++.++... ....+++++||...|..+..
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~-ll~~~~~~l~~~------~~~~il~~a~T~~Aa~~l~~ 92 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATT-LTKFIIEALIST------GETGIILAAPTHAAKKILSK 92 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHH-HHHHHHHHHHHT------TCCCEEEEESSHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHH-HHHHHHHHHHhc------CCceEEEecCcHHHHHHHHh
Confidence 34577889999999987753 23 88888999999994 334455555543 12478999999988876655
Q ss_pred HH
Q psy17644 259 EA 260 (330)
Q Consensus 259 ~~ 260 (330)
.+
T Consensus 93 ~~ 94 (459)
T 3upu_A 93 LS 94 (459)
T ss_dssp HH
T ss_pred hh
Confidence 44
No 88
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.92 E-value=1.7e-05 Score=78.92 Aligned_cols=65 Identities=15% Similarity=0.075 Sum_probs=49.8
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
..+++.|+.++..++.++.+++.|+.|+|||.+. ..++..+.. .+.++++++||...+..+.+.+
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~-------~g~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES-------LGLEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH-------TTCCEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh-------cCCeEEEecCcHHHHHHhHhhh
Confidence 4578999999999999999999999999999432 223333322 4678999999999988776543
No 89
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.53 E-value=0.00038 Score=65.67 Aligned_cols=118 Identities=17% Similarity=0.128 Sum_probs=77.2
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.++|+|..++..+...|-+++..+-+.|||.+.+.-++..++.. .+..+++++||+..|..++..++.+....+
T Consensus 163 ~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~------~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P 236 (385)
T 2o0j_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (385)
T ss_dssp CCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS------SSCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHHHHHHhCh
Confidence 68999999998765556788889999999977666555544432 367899999999999999988887755332
Q ss_pred --c--eEEEEECCCchHHHHHHHhCCCeEEEEC--hHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 269 --L--SVVCCYGGGSKWDQSKALELGAEIVVGT--PGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 269 --~--~~~~~~gg~~~~~~~~~l~~~~dIiV~T--P~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
+ .+.. .... ...+.+|+.|.+.+ |..+. =.++.++|+||+|.+-
T Consensus 237 ~ll~~~~~~-~~~~-----~I~f~nGs~i~~lsa~~~slr---------G~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 237 DFLQPGIVE-WNKG-----SIELDNGSSIGAYASSPDAVR---------GNSFAMIYIEDCAFIP 286 (385)
T ss_dssp TTTSCCEEE-ECSS-----EEEETTSCEEEEEECSHHHHH---------TSCCSEEEEESGGGST
T ss_pred Hhhhhhhcc-CCcc-----EEEeCCCCEEEEEECCCCCcc---------CCCCCEEEechhhhcC
Confidence 1 1111 1100 01123455554433 44443 1246899999999763
No 90
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=97.37 E-value=0.00035 Score=70.68 Aligned_cols=68 Identities=26% Similarity=0.349 Sum_probs=51.1
Q ss_pred CCCCCCHHHHHhhhhhc----CCC-cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 186 EYTSPTPIQAQAVPAAL----SGR-DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 186 ~~~~pt~iQ~~~i~~~~----~g~-d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
+| .|++.|..+|..+. .|. ..++.+.||||||+++.- ++..+ +..+|||+|+..+|.|++..+
T Consensus 6 ~~-~~~~~q~~ai~~l~~~~~~~~~~~~l~g~tgs~kt~~~a~-~~~~~----------~~~~lvv~~~~~~A~ql~~el 73 (664)
T 1c4o_A 6 GP-SPKGDQPKAIAGLVEALRDGERFVTLLGATGTGKTVTMAK-VIEAL----------GRPALVLAPNKILAAQLAAEF 73 (664)
T ss_dssp SC-CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH----------TCCEEEEESSHHHHHHHHHHH
T ss_pred CC-CCCCCChHHHHHHHHHHhcCCCcEEEEcCCCcHHHHHHHH-HHHHh----------CCCEEEEecCHHHHHHHHHHH
Confidence 45 89999999887654 343 467789999999965442 22221 224899999999999999999
Q ss_pred HHhcc
Q psy17644 261 KRFGK 265 (330)
Q Consensus 261 ~~l~~ 265 (330)
+.|..
T Consensus 74 ~~~~~ 78 (664)
T 1c4o_A 74 RELFP 78 (664)
T ss_dssp HHHCT
T ss_pred HHHCC
Confidence 99964
No 91
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.30 E-value=0.00096 Score=66.54 Aligned_cols=118 Identities=16% Similarity=0.120 Sum_probs=77.9
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCC
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~ 268 (330)
.++|+|..++..+...+-+++..+-|+|||.+...-++..++.. .+..+++++||+..|..++..++.+....+
T Consensus 163 ~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~------~~~~i~~va~t~~qA~~~~~~i~~~i~~~p 236 (592)
T 3cpe_A 163 QLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN------KDKAVGILAHKGSMSAEVLDRTKQAIELLP 236 (592)
T ss_dssp CCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTS------SSCEEEEEESSHHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhC------CCCeEEEEECCHHHHHHHHHHHHHHHHhCh
Confidence 58999999988775567788999999999977665555444432 356899999999999999988888766543
Q ss_pred --ceEE-EEECCCchHHHHHHHhCCCeEEEE--ChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 269 --LSVV-CCYGGGSKWDQSKALELGAEIVVG--TPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 269 --~~~~-~~~gg~~~~~~~~~l~~~~dIiV~--TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
+... ....... ..+.+|+.|.+. +|..+.- .++.++|+||+|.+
T Consensus 237 ~~~~~~~~~~~~~~-----i~~~nGs~i~~~s~~~~~lrG---------~~~~~~iiDE~~~~ 285 (592)
T 3cpe_A 237 DFLQPGIVEWNKGS-----IELDNGSSIGAYASSPDAVRG---------NSFAMIYIEDCAFI 285 (592)
T ss_dssp TTTSCCEEEECSSE-----EEETTSCEEEEEECCHHHHHH---------SCCSEEEEETGGGC
T ss_pred HhhccccccCCccE-----EEecCCCEEEEEeCCCCCccC---------CCcceEEEehhccC
Confidence 1110 1011110 112345555443 3554431 14678999999975
No 92
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.04 E-value=0.002 Score=64.47 Aligned_cols=72 Identities=18% Similarity=0.180 Sum_probs=54.1
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
..+++-|.+++.. ....+++.|+.|||||.+ ++.-+.+++.... ....++|+|++|+..+.++.+.+.++..
T Consensus 8 ~~Ln~~Q~~av~~--~~~~~lV~a~aGsGKT~~-l~~ri~~l~~~~~---~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PRSNLLVLAGAGSGKTRV-LVHRIAWLMSVEN---CSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TTCCHHHHHHHTC--CSSCEEEEECTTSCHHHH-HHHHHHHHHHTSC---CCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred hcCCHHHHHHHhC--CCCCEEEEECCCCCHHHH-HHHHHHHHHHhCC---CChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 4688999999974 356799999999999954 3444455554321 1235899999999999999999888743
No 93
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=96.49 E-value=0.0054 Score=61.90 Aligned_cols=71 Identities=18% Similarity=0.120 Sum_probs=52.6
Q ss_pred CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
.+++-|++++... +..+++.|+.|||||.+.+ .-+.+++.... ....++|+|+.|+..|.++.+.+.++..
T Consensus 2 ~L~~~Q~~av~~~--~~~~lV~AgaGSGKT~~l~-~ri~~ll~~~~---~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--TGPCLVLAGAGSGKTRVIT-NKIAHLIRGCG---YQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp CCCHHHHHHHHCC--SSEEEECCCTTSCHHHHHH-HHHHHHHHHHC---CCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHhCC--CCCEEEEeCCCCChHHHHH-HHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 4789999999763 5788999999999995433 33344443211 1345899999999999999999887654
No 94
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=96.38 E-value=0.0087 Score=61.04 Aligned_cols=71 Identities=18% Similarity=0.145 Sum_probs=52.9
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
..+++-|++++... ...+++.|+.|||||.+. +.-+.+++.... ....++|+|+.|+..|.++.+.+.++.
T Consensus 10 ~~Ln~~Q~~av~~~--~g~~lV~AgAGSGKT~vL-~~ri~~ll~~~~---~~p~~IL~vTFTnkAA~Em~~Rl~~~l 80 (724)
T 1pjr_A 10 AHLNKEQQEAVRTT--EGPLLIMAGAGSGKTRVL-THRIAYLMAEKH---VAPWNILAITFTNKAAREMRERVQSLL 80 (724)
T ss_dssp TTSCHHHHHHHHCC--SSCEEEEECTTSCHHHHH-HHHHHHHHHTTC---CCGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred hhCCHHHHHHHhCC--CCCEEEEEcCCCCHHHHH-HHHHHHHHHhcC---CCHHHeEEEeccHHHHHHHHHHHHHHh
Confidence 46889999998763 568999999999999543 334445554311 123579999999999999998887764
No 95
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=96.19 E-value=0.01 Score=64.22 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=53.8
Q ss_pred CCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 188 ~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.++|+-|.++|..- ++++++.|..|||||.+.+--++..+..... .....++|+|++|+..|..+.+.+...
T Consensus 9 ~~~t~eQ~~~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~--~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 9 STWTDDQWNAIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEEN--PIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp -CCCHHHHHHHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSS--CCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCC--CCCccceEEEeccHHHHHHHHHHHHHH
Confidence 35799999999765 8899999999999996655444444433211 113458999999999999999988774
No 96
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.12 E-value=0.022 Score=47.04 Aligned_cols=17 Identities=35% Similarity=0.534 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|+.+++.|++|+|||.
T Consensus 37 ~g~~~~l~G~~G~GKTt 53 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTH 53 (180)
T ss_dssp GCCEEEECCSSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 47889999999999994
No 97
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.08 E-value=0.0073 Score=57.82 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=31.1
Q ss_pred cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 206 DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
=.++.|+.|+|||... ..++. ....+|++||++++..+.+.+.+
T Consensus 163 v~~I~G~aGsGKTt~I-----~~~~~--------~~~~lVlTpT~~aa~~l~~kl~~ 206 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEI-----LSRVN--------FEEDLILVPGRQAAEMIRRRANA 206 (446)
T ss_dssp EEEEEECTTSCHHHHH-----HHHCC--------TTTCEEEESCHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHH-----HHHhc--------cCCeEEEeCCHHHHHHHHHHhhh
Confidence 3566799999999533 22222 12459999999999888877754
No 98
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.72 E-value=0.018 Score=50.00 Aligned_cols=91 Identities=14% Similarity=0.150 Sum_probs=50.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD 282 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 282 (330)
.|.=+++.|++|+|||.+.+ -++.++.. .+.+++|+.|...- . ....++...++..
T Consensus 11 ~G~i~litG~mGsGKTT~ll-~~~~r~~~-------~g~kVli~~~~~d~--r---~~~~i~srlG~~~----------- 66 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELI-RRLHRLEY-------ADVKYLVFKPKIDT--R---SIRNIQSRTGTSL----------- 66 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHH-HHHHHHHH-------TTCCEEEEEECCCG--G---GCSSCCCCCCCSS-----------
T ss_pred CcEEEEEECCCCCcHHHHHH-HHHHHHHh-------cCCEEEEEEeccCc--h---HHHHHHHhcCCCc-----------
Confidence 35556777999999995543 33444333 35678888775421 0 0011222222111
Q ss_pred HHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEEEeeccccc
Q psy17644 283 QSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326 (330)
Q Consensus 283 ~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvDEad~l 326 (330)
..+-+.+...+...+..... -...++||||||+.+
T Consensus 67 --------~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l 101 (223)
T 2b8t_A 67 --------PSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFF 101 (223)
T ss_dssp --------CCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGS
T ss_pred --------cccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccC
Confidence 12335566667766654322 245789999999875
No 99
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.71 E-value=0.015 Score=49.27 Aligned_cols=40 Identities=18% Similarity=0.069 Sum_probs=26.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr 250 (330)
.|+=.++.+++|+|||.+.+- ++.+... .+.+++++.|..
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~-~a~r~~~-------~g~kV~v~k~~~ 46 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIR-RIRRAKI-------AKQKIQVFKPEI 46 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHH-HHHHHHH-------TTCCEEEEEEC-
T ss_pred CCEEEEEECCCCCcHHHHHHH-HHHHHHH-------CCCEEEEEEecc
Confidence 355567779999999965443 3333332 467899998873
No 100
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.65 E-value=0.024 Score=57.18 Aligned_cols=66 Identities=26% Similarity=0.367 Sum_probs=48.5
Q ss_pred CCCHHHHHhhhhhc----CCC-cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 189 SPTPIQAQAVPAAL----SGR-DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~----~g~-d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.|+..|..+|..+. .|. ..++.+-||||||++..- ++... +..+|||+|+..+|.|++..++.|
T Consensus 12 ~p~~~Q~~~i~~l~~~~~~~~~~~~l~g~~gs~k~~~~a~-~~~~~----------~~~~lvv~~~~~~A~~l~~el~~~ 80 (661)
T 2d7d_A 12 QPQGDQPKAIEKLVKGIQEGKKHQTLLGATGTGKTFTVSN-LIKEV----------NKPTLVIAHNKTLAGQLYSEFKEF 80 (661)
T ss_dssp CCCTTHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHH-HHHHH----------CCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhcCCCcEEEECcCCcHHHHHHHH-HHHHh----------CCCEEEEECCHHHHHHHHHHHHHH
Confidence 68888988887554 343 467789999999954432 22221 124899999999999999999999
Q ss_pred cc
Q psy17644 264 GK 265 (330)
Q Consensus 264 ~~ 265 (330)
..
T Consensus 81 ~~ 82 (661)
T 2d7d_A 81 FP 82 (661)
T ss_dssp CT
T ss_pred cC
Confidence 64
No 101
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=95.55 E-value=0.13 Score=43.13 Aligned_cols=71 Identities=17% Similarity=0.201 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---h-CCCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---E-LGAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
++++||.|+|+..|..+...++.. ++.+..++|+.+...+...+ + ....|+|||. .+. ..+++..+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----~~~-~Gldi~~v 123 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLK----GVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATD-----VAS-KGLDFPAI 123 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH-----HHH-TTCCCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC-----chh-cCCCcccC
Confidence 468999999999999999988876 57788889988765543332 2 2578999993 333 35567777
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 124 ~~VI~ 128 (191)
T 2p6n_A 124 QHVIN 128 (191)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 77765
No 102
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.46 E-value=0.013 Score=49.19 Aligned_cols=40 Identities=18% Similarity=0.097 Sum_probs=25.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr 250 (330)
.|+=.++.+++|+|||...+- ++..... .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~-~~~~~~~-------~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLS-FVEIYKL-------GKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHH-HHHHHHH-------TTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHH-HHHHHHH-------CCCeEEEEeecc
Confidence 355567889999999965432 3333332 356788888873
No 103
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=95.17 E-value=0.15 Score=41.33 Aligned_cols=73 Identities=14% Similarity=0.176 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|..+...+... +..+..++|+.+....... ++. ...|||||. .+ ...+++..
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gld~~~ 103 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDDL----GYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATD-----VA-ARGIDIEN 103 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TTTCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hh-hcCCchhc
Confidence 3568999999999999999988875 6778888998876554333 333 478999993 22 23556777
Q ss_pred ccEEEee
Q psy17644 315 VTFLVLD 321 (330)
Q Consensus 315 i~~lVvD 321 (330)
+.+||.-
T Consensus 104 ~~~Vi~~ 110 (163)
T 2hjv_A 104 ISLVINY 110 (163)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7777753
No 104
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=95.04 E-value=0.12 Score=42.35 Aligned_cols=72 Identities=14% Similarity=0.094 Sum_probs=52.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|..+...+... +..+..++|+.+....... ++. ...|+|||. .+ ...+++..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----GHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-----VC-ARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-----SC-CTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-----ch-hcCCCccc
Confidence 3568999999999999999888765 6678888998876554333 333 478999993 11 23456777
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+.+||.
T Consensus 103 ~~~Vi~ 108 (175)
T 2rb4_A 103 VTIVVN 108 (175)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 888874
No 105
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=94.86 E-value=0.19 Score=40.67 Aligned_cols=73 Identities=11% Similarity=0.238 Sum_probs=52.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.++|+..|..+...+... +..+..++|+.+....... ++. ...|+|||. .+ ....++..
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~G~d~~~ 98 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD-----LL-ARGIDVQQ 98 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEG-----GG-TTTCCCCS
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcC-----hh-hcCCCccc
Confidence 3578999999999999999988875 5678888888876554333 333 478999993 22 23456777
Q ss_pred ccEEEee
Q psy17644 315 VTFLVLD 321 (330)
Q Consensus 315 i~~lVvD 321 (330)
+.+||.=
T Consensus 99 ~~~Vi~~ 105 (165)
T 1fuk_A 99 VSLVINY 105 (165)
T ss_dssp CSEEEES
T ss_pred CCEEEEe
Confidence 7777753
No 106
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.79 E-value=0.12 Score=47.14 Aligned_cols=18 Identities=11% Similarity=-0.101 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+.++++.|++|+|||++
T Consensus 44 ~~~~lli~GpPGTGKT~~ 61 (318)
T 3te6_A 44 QNKLFYITNADDSTKFQL 61 (318)
T ss_dssp CCCEEEEECCCSHHHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999954
No 107
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=94.76 E-value=0.031 Score=45.13 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|+.+++.+++|+|||.
T Consensus 35 ~g~~~~l~G~~G~GKTt 51 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSH 51 (149)
T ss_dssp CCSEEEEESSSTTTTCH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 68889999999999993
No 108
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=94.69 E-value=0.16 Score=43.19 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=52.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---hC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---EL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+.++||.|+|+.-+..++..+... +..+..++|+.+...+...+ +. ..+|+|||. ++ ...+++..+
T Consensus 31 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~-~~Gidi~~v 100 (212)
T 3eaq_A 31 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-----VA-ARGLDIPQV 100 (212)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHH----TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-----TT-TCSSSCCCB
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHc----CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-----hh-hcCCCCccC
Confidence 568999999999999999988876 57788899998876654333 33 478999993 22 234556677
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 101 ~~Vi~ 105 (212)
T 3eaq_A 101 DLVVH 105 (212)
T ss_dssp SEEEE
T ss_pred cEEEE
Confidence 77664
No 109
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.44 E-value=0.034 Score=47.88 Aligned_cols=40 Identities=15% Similarity=0.104 Sum_probs=25.5
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
|+=.+++++.|+|||.+.+--+.+. .. .+-+++|+.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~-~~-------~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRT-QF-------AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH-HH-------TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHH-HH-------CCCEEEEEEeccC
Confidence 4444567999999996554444333 22 4678999998753
No 110
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.44 E-value=0.06 Score=45.62 Aligned_cols=39 Identities=13% Similarity=0.019 Sum_probs=27.4
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
.|+=.++.+++|+||| +.|+-++.+... .+.+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKT-t~Ll~~i~n~~~-------~~~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKS-TELMRRVRRFQI-------AQYKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHH-HHHHHHHHHHHH-------TTCCEEEEEET
T ss_pred ceEEEEEECCCCCcHH-HHHHHHHHHHHH-------cCCeEEEEccc
Confidence 3555677799999999 455555555444 25788999887
No 111
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.37 E-value=0.083 Score=48.54 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++.+++.|++|+|||..
T Consensus 43 ~~~~vll~G~~G~GKT~l 60 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAV 60 (387)
T ss_dssp CCCCEEECBCTTSSHHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 457899999999999943
No 112
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.11 E-value=0.15 Score=46.08 Aligned_cols=17 Identities=29% Similarity=0.247 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.+..+++.|++|+|||.
T Consensus 36 ~~~~lll~G~~GtGKT~ 52 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTH 52 (324)
T ss_dssp SCSSEEEECSSSSSHHH
T ss_pred CCCeEEEECCCCCcHHH
Confidence 35789999999999994
No 113
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.09 E-value=0.26 Score=47.16 Aligned_cols=117 Identities=17% Similarity=0.062 Sum_probs=56.7
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
+..|.=+++.|++|+||| +|++.++.++... .+-.|+|+..-- -..|+...+........... ...|....
T Consensus 200 l~~G~liiI~G~pG~GKT-tl~l~ia~~~~~~------~g~~Vl~~s~E~-s~~~l~~r~~~~~~~~~~~~-l~~g~l~~ 270 (454)
T 2r6a_A 200 FQRSDLIIVAARPSVGKT-AFALNIAQNVATK------TNENVAIFSLEM-SAQQLVMRMLCAEGNINAQN-LRTGKLTP 270 (454)
T ss_dssp BCTTCEEEEECCTTSCHH-HHHHHHHHHHHHH------SSCCEEEEESSS-CHHHHHHHHHHHHHTCCHHH-HHTSCCCH
T ss_pred CCCCCEEEEECCCCCCHH-HHHHHHHHHHHHh------CCCcEEEEECCC-CHHHHHHHHHHHHcCCCHHH-HhcCCCCH
Confidence 345667778899999999 4555555555432 244577766432 22344443321100111100 00111222
Q ss_pred HHH------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 281 WDQ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 281 ~~~------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
... ...+.. ..+.|. |.+.+...+.+-.. -..+++||||+.+.|..
T Consensus 271 ~~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~i~~~~~~l~~-~~~~~livID~l~~~~~ 327 (454)
T 2r6a_A 271 EDWGKLTMAMGSLSN-AGIYIDDTPSIRVSDIRAKCRRLKQ-ESGLGMIVIDYLQLIQG 327 (454)
T ss_dssp HHHHHHHHHHHHHHS-SCEEEECCTTCCHHHHHHHHHHHHT-TTCCCEEEEECGGGSCC
T ss_pred HHHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEccHHHhcc
Confidence 111 111222 345553 45555554432111 13589999999998873
No 114
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.44 E-value=0.098 Score=52.53 Aligned_cols=59 Identities=19% Similarity=0.224 Sum_probs=40.3
Q ss_pred CCCHHHHHhhhhhcC--CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 189 SPTPIQAQAVPAALS--GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 189 ~pt~iQ~~~i~~~~~--g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
.+|.-|.+++..++. ..-.++.|.-|.|||.+.-+.+ ..+ . ..++|.+||.+-+..+.+
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~-a~~-~---------~~~~vtAP~~~a~~~l~~ 235 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLI-SRI-A---------GRAIVTAPAKASTDVLAQ 235 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHH-HHS-S---------SCEEEECSSCCSCHHHHH
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHH-HHH-H---------hCcEEECCCHHHHHHHHH
Confidence 689999999987774 2235777999999994433322 222 1 135999999887765444
No 115
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=93.35 E-value=0.38 Score=39.32 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=50.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|..++..+... +..+..++|+......... ++. ...|+|||.. + ...+++..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~-----~-~~Gldi~~ 99 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNL-----F-GRGMDIER 99 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSC-----C-STTCCGGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCc-----h-hcCcchhh
Confidence 3568999999999999999988875 5678888888876554333 333 4789999931 1 12344556
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+.+||.
T Consensus 100 ~~~Vi~ 105 (172)
T 1t5i_A 100 VNIAFN 105 (172)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 666654
No 116
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.28 E-value=0.74 Score=41.59 Aligned_cols=17 Identities=29% Similarity=0.223 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
...+++.|++|+|||..
T Consensus 55 ~~~vll~G~~GtGKT~l 71 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTL 71 (338)
T ss_dssp CCCEEEECSTTSSHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35799999999999943
No 117
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.26 E-value=0.11 Score=45.71 Aligned_cols=17 Identities=24% Similarity=0.122 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
.+.+++.|++|+|||..
T Consensus 64 ~~~vLl~G~~GtGKT~l 80 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTAL 80 (272)
T ss_dssp EEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCcHHHH
Confidence 35799999999999944
No 118
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=93.18 E-value=1.1 Score=43.54 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=56.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh----CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE----LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~----~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+.-|..++..++.... .+..+..++|+.........+. ...+|||||. .+ ...+++..
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~-~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~-----~~-~~GiDip~ 410 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 410 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc-CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcc-----hh-hcCCCccc
Confidence 467999999999999999999987643 2567888888887665443332 3579999994 22 24566777
Q ss_pred ccEEEeec
Q psy17644 315 VTFLVLDE 322 (330)
Q Consensus 315 i~~lVvDE 322 (330)
+.+||.-.
T Consensus 411 v~~VI~~~ 418 (563)
T 3i5x_A 411 VHEVLQIG 418 (563)
T ss_dssp CCEEEEES
T ss_pred CCEEEEEC
Confidence 88887544
No 119
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=93.16 E-value=0.3 Score=40.52 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=43.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---HHHh-CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS---KALE-LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~l~-~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|..+...++.. ++.+..++|+.+..... ..++ ....|||||. .+. ..+++..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~----g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~-----~~~-~Gldi~~ 114 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 114 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHT----TCCEEEEC--------CHHHHHHHHTSSSEEEEEC------------CCCS
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHc----CCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcC-----hhh-cCCCccc
Confidence 4678999999999999999888775 56788888877654432 2222 3578999993 222 2345666
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+.+||.
T Consensus 115 ~~~VI~ 120 (185)
T 2jgn_A 115 VKHVIN 120 (185)
T ss_dssp BSEEEE
T ss_pred CCEEEE
Confidence 776664
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.08 E-value=0.45 Score=39.42 Aligned_cols=15 Identities=27% Similarity=0.441 Sum_probs=13.1
Q ss_pred CcEEEEcCCCChhHH
Q psy17644 205 RDIIGVAKTGSGKTG 219 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~ 219 (330)
..+++.|++|+|||.
T Consensus 39 ~~~ll~G~~G~GKT~ 53 (226)
T 2chg_A 39 PHLLFSGPPGTGKTA 53 (226)
T ss_dssp CCEEEECSTTSSHHH
T ss_pred CeEEEECCCCCCHHH
Confidence 459999999999994
No 121
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.03 E-value=0.16 Score=44.27 Aligned_cols=40 Identities=13% Similarity=0.041 Sum_probs=26.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr 250 (330)
.|+=.++.|+.|+|||.+.+--+.+.. . .+-+++|+-|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~-~-------~g~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQ-I-------AQYKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH-T-------TTCCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHH-H-------CCCeEEEEeecC
Confidence 355567779999999965444443332 2 467889988864
No 122
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.00 E-value=0.55 Score=45.34 Aligned_cols=52 Identities=13% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhcc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK 265 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~ 265 (330)
.|....+.+-||||||++ +..+. .+ .+..+|||+|+...|.|++..++.|..
T Consensus 13 ~~~~~~l~g~~gs~ka~~--~a~l~---~~------~~~p~lvv~~~~~~A~~l~~~l~~~~~ 64 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATL--VAEIA---ER------HAGPVVLIAPDMQNALRLHDEISQFTD 64 (483)
T ss_dssp TTCEEEEECCCTTHHHHH--HHHHH---HH------SSSCEEEEESSHHHHHHHHHHHHHTCS
T ss_pred CCCeEEEeCCCchHHHHH--HHHHH---HH------hCCCEEEEeCCHHHHHHHHHHHHhhCC
Confidence 456778889999999943 22222 21 133479999999999999999999864
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.87 E-value=0.24 Score=45.55 Aligned_cols=15 Identities=27% Similarity=0.372 Sum_probs=13.1
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.|++|+|||..
T Consensus 46 ~~li~G~~G~GKTtl 60 (389)
T 1fnn_A 46 RATLLGRPGTGKTVT 60 (389)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 789999999999943
No 124
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.86 E-value=0.34 Score=43.90 Aligned_cols=53 Identities=13% Similarity=0.031 Sum_probs=32.5
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
+..|.=+++.|++|+||| +|++-+..++.. ++..++|++-- .-..|+...+..
T Consensus 65 l~~G~l~li~G~pG~GKT-tl~l~ia~~~a~-------~g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKT-AFALKQAKNMSD-------NDDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp BCTTCEEEEECCTTSSHH-HHHHHHHHHHHT-------TTCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHH-HHHHHHHHHHHH-------cCCeEEEEECC-CCHHHHHHHHHH
Confidence 345667888899999999 455555555543 23567777643 334455544443
No 125
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=92.84 E-value=0.18 Score=46.44 Aligned_cols=115 Identities=14% Similarity=0.059 Sum_probs=55.8
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
..|.=+++.|++|+||| +|++-+..++.. .+..|+|++.- .-..|+...+.......+... +..|..+..
T Consensus 44 ~~G~LiiIaG~pG~GKT-t~al~ia~~~a~-------~g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~~~~-l~~g~Ls~~ 113 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKT-SLMMNMVLSALN-------DDRGVAVFSLE-MSAEQLALRALSDLTSINMHD-LESGRLDDD 113 (338)
T ss_dssp CTTCEEEEEECTTSCHH-HHHHHHHHHHHH-------TTCEEEEEESS-SCHHHHHHHHHHHHHCCCHHH-HHHTCCCHH
T ss_pred CCCcEEEEEeCCCCCHH-HHHHHHHHHHHH-------cCCeEEEEeCC-CCHHHHHHHHHHHhhCCCHHH-HhcCCCCHH
Confidence 35556777799999999 455555555544 25567777642 233444444322211111110 001212221
Q ss_pred HHH------HHHhCCCeEEE-EC----hHHHHHHHHcCCCCCCCccEEEeecccccC
Q psy17644 282 DQS------KALELGAEIVV-GT----PGRIIDMVKMGATKLNRVTFLVLDEADRMF 327 (330)
Q Consensus 282 ~~~------~~l~~~~dIiV-~T----P~~L~~~l~~~~~~l~~i~~lVvDEad~ll 327 (330)
++. ..+.. ..|.| .+ +..|...+++-......+.+||||-.+.|.
T Consensus 114 e~~~l~~a~~~l~~-~~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 114 QWENLAKCFDHLSQ-KKLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMS 169 (338)
T ss_dssp HHHHHHHHHHHHHH-SCEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHhc-CCeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhc
Confidence 111 11222 34555 33 444544443211111168999999988774
No 126
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=92.76 E-value=0.46 Score=45.25 Aligned_cols=16 Identities=25% Similarity=0.181 Sum_probs=14.3
Q ss_pred CCcEEEEcCCCChhHH
Q psy17644 204 GRDIIGVAKTGSGKTG 219 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~ 219 (330)
+..+++.|++|+|||.
T Consensus 130 ~~~lll~Gp~G~GKTt 145 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTH 145 (440)
T ss_dssp SCCEEEECSSSSSHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5789999999999994
No 127
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.64 E-value=0.14 Score=47.22 Aligned_cols=17 Identities=29% Similarity=0.178 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++.+++.|++|+|||..
T Consensus 45 ~~~vll~G~~G~GKT~l 61 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFV 61 (384)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CCcEEEECCCCCCHHHH
Confidence 45689999999999943
No 128
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=92.56 E-value=0.98 Score=41.74 Aligned_cols=72 Identities=15% Similarity=0.209 Sum_probs=53.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---h-CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---E-LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|..++..+... +..+..++|+.....+...+ + ...+|||||. .+. ...++..
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-----~~~-~Gidip~ 344 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE----GYACTSIHGDRSQRDREEALHQFRSGKSPILVATA-----VAA-RGLDISN 344 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-----HHH-TTSCCCC
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC----CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-----hhh-cCCCccc
Confidence 4678999999999999999988875 56788888888765543332 2 3578999994 333 3566777
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+.+||.
T Consensus 345 v~~Vi~ 350 (417)
T 2i4i_A 345 VKHVIN 350 (417)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 887775
No 129
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=92.35 E-value=0.54 Score=42.68 Aligned_cols=59 Identities=20% Similarity=0.167 Sum_probs=32.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH-HHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL-SQQIYNEAKRF 263 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L-a~Qi~~~~~~l 263 (330)
.|+-+++.|++|+|||. +++.++..+..... ..+.+.+++++.-...+ ..++...+.++
T Consensus 106 ~G~i~~i~G~~GsGKT~-la~~la~~~~~~~~-~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQ-LCHQLSVNVQLPPE-KGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp TTSEEEEEESTTSSHHH-HHHHHHHHTTSCGG-GTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHhH-HHHHHHHHHhcccc-cCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 56778888999999994 44444433222110 00114577877654322 44555555544
No 130
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=92.33 E-value=0.13 Score=44.30 Aligned_cols=41 Identities=20% Similarity=0.098 Sum_probs=26.1
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
.|.=.+++++.|+|||...+- .+.+... .+.+++|+.|...
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr-~~~r~~~-------~g~kvli~kp~~D 67 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIR-RLRRGIY-------AKQKVVVFKPAID 67 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHH-HHHHHHH-------TTCCEEEEEEC--
T ss_pred CceEEEEECCCCCCHHHHHHH-HHHHHHH-------cCCceEEEEeccC
Confidence 355567789999999954433 3344333 3578899988643
No 131
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.19 E-value=0.47 Score=45.19 Aligned_cols=116 Identities=18% Similarity=0.090 Sum_probs=56.7
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
..|.=+++.|++|+||| +|++.+..++... .+..|+|+..- .-..|+...+........... ...|.....
T Consensus 198 ~~G~l~ii~G~pg~GKT-~lal~ia~~~a~~------~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~~~-l~~g~l~~~ 268 (444)
T 2q6t_A 198 GPGSLNIIAARPAMGKT-AFALTIAQNAALK------EGVGVGIYSLE-MPAAQLTLRMMCSEARIDMNR-VRLGQLTDR 268 (444)
T ss_dssp CTTCEEEEEECTTSCHH-HHHHHHHHHHHHT------TCCCEEEEESS-SCHHHHHHHHHHHHTTCCTTT-CCGGGCCHH
T ss_pred CCCcEEEEEeCCCCCHH-HHHHHHHHHHHHh------CCCeEEEEECC-CCHHHHHHHHHHHHcCCCHHH-HhCCCCCHH
Confidence 35566777899999999 5555555555432 24457776542 223344444322111111100 001222222
Q ss_pred HH------HHHHhCCCeEEEE-----ChHHHHHHHHcCCCCCCCccEEEeecccccCc
Q psy17644 282 DQ------SKALELGAEIVVG-----TPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328 (330)
Q Consensus 282 ~~------~~~l~~~~dIiV~-----TP~~L~~~l~~~~~~l~~i~~lVvDEad~lld 328 (330)
.+ ...+.. ..|.|. |+..+...+.+-.. -..+++||||..+.|..
T Consensus 269 ~~~~~~~a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~l~~-~~~~~lIvID~l~~~~~ 324 (444)
T 2q6t_A 269 DFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLVS-QNQVGLIIIDYLQLMSG 324 (444)
T ss_dssp HHHHHHHHHHHHHT-SCEEEECCTTCBHHHHHHHHHHHHH-HSCCCEEEEECGGGCBC
T ss_pred HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHH-HcCCCEEEEcChhhcCC
Confidence 21 112222 345553 44555544332110 12588999999998863
No 132
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=92.13 E-value=1.8 Score=42.35 Aligned_cols=77 Identities=16% Similarity=0.106 Sum_probs=55.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---h-CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---E-LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|..++..++.... .+..+..++|+.........+ + ....|||||- .+ ...+++..
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~-~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~-----~~-~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFK-KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTD-----VG-ARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHT-TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECG-----GG-TSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhc-CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcc-----hh-hcCCCccc
Confidence 467899999999999999999987643 256788888888765543332 2 3579999994 22 23566777
Q ss_pred ccEEEeec
Q psy17644 315 VTFLVLDE 322 (330)
Q Consensus 315 i~~lVvDE 322 (330)
+.+||.-.
T Consensus 360 v~~VI~~~ 367 (579)
T 3sqw_A 360 VHEVLQIG 367 (579)
T ss_dssp CCEEEEES
T ss_pred CCEEEEcC
Confidence 88887644
No 133
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=92.09 E-value=1.1 Score=40.28 Aligned_cols=71 Identities=13% Similarity=0.200 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---h-CCCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---E-LGAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+.++||.|+|+.-+..++..+... +..+..++|+.+...+...+ + ...+|+|||- ++. ..+++..+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~~----g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~-----va~-~Gidi~~v 97 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLRL----GHPAQALHGDMSQGERERVMGAFRQGEVRVLVATD-----VAA-RGLDIPQV 97 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT----TCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECS-----TTT-CSTTCCCC
T ss_pred CCCEEEEECCHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEec-----hhh-cCccccce
Confidence 578999999999999888887664 67888999998766554333 2 2478999992 222 34566777
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 98 ~~VI~ 102 (300)
T 3i32_A 98 DLVVH 102 (300)
T ss_dssp SEEEE
T ss_pred eEEEE
Confidence 77764
No 134
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.91 E-value=0.53 Score=44.95 Aligned_cols=86 Identities=17% Similarity=0.201 Sum_probs=44.8
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEECCCchHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA--PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD 282 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~--Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~ 282 (330)
+-+++++++|+|||.+.. -+..+ +.. .+.+++++. |.|.-+. ..++.++...++.+.....+.....
T Consensus 101 ~vIlivG~~G~GKTTt~~-kLA~~-l~~------~G~kVllv~~D~~R~aa~---eqL~~~~~~~gvpv~~~~~~~dp~~ 169 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVA-KLARY-FQK------RGYKVGVVCSDTWRPGAY---HQLRQLLDRYHIEVFGNPQEKDAIK 169 (443)
T ss_dssp EEEEEECCTTSSHHHHHH-HHHHH-HHT------TTCCEEEEECCCSSTHHH---HHHHHHHGGGTCEEECCTTCCCHHH
T ss_pred eEEEEECcCCCCHHHHHH-HHHHH-HHH------CCCeEEEEeCCCcchhHH---HHHHHHHHhcCCcEEecCCCCCHHH
Confidence 456777999999994433 22223 332 355666665 4455443 3455555555666554433333221
Q ss_pred ----HHHHH-hCCCeEEE-EChHHH
Q psy17644 283 ----QSKAL-ELGAEIVV-GTPGRI 301 (330)
Q Consensus 283 ----~~~~l-~~~~dIiV-~TP~~L 301 (330)
..... ..++|+|| =||+++
T Consensus 170 i~~~al~~a~~~~~DvVIIDTaGrl 194 (443)
T 3dm5_A 170 LAKEGVDYFKSKGVDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHHHHhCCCCEEEEECCCcc
Confidence 11222 23577654 577754
No 135
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=91.90 E-value=0.17 Score=45.18 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+..+++.|++|+|||..
T Consensus 66 ~~~~vll~G~~GtGKT~l 83 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTV 83 (309)
T ss_dssp CCCEEEEEECTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 456799999999999944
No 136
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=91.65 E-value=0.25 Score=42.32 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=32.5
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
..|.-+++.|++|+|||. +++.++..+.. .+.+++++.- .....++...+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTt-l~~~~~~~~~~-------~~~~v~~~~~-e~~~~~~~~~~~~~ 73 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTI-FSQQFLWNGLK-------MGEPGIYVAL-EEHPVQVRQNMAQF 73 (247)
T ss_dssp ETTCEEEEEECTTSSHHH-HHHHHHHHHHH-------TTCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEEc-cCCHHHHHHHHHHc
Confidence 467788889999999994 33444444433 2446676653 33445666655544
No 137
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.36 E-value=0.97 Score=40.56 Aligned_cols=14 Identities=36% Similarity=0.579 Sum_probs=10.2
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
+++.+++|+|||..
T Consensus 51 ~L~~G~~G~GKT~l 64 (324)
T 3u61_B 51 ILHSPSPGTGKTTV 64 (324)
T ss_dssp EEECSSTTSSHHHH
T ss_pred EEeeCcCCCCHHHH
Confidence 45557799999943
No 138
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=90.60 E-value=1.5 Score=41.22 Aligned_cols=70 Identities=7% Similarity=0.129 Sum_probs=51.2
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---hC-CCeEEEEChHHHHHHHHcCCCCCCCcc
Q psy17644 241 PMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---EL-GAEIVVGTPGRIIDMVKMGATKLNRVT 316 (330)
Q Consensus 241 ~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~ 316 (330)
.++||.|+|+.-|..++..+... +..+..++|+.....+...+ +. ...|||||. . -...+++..+.
T Consensus 301 ~~~lVF~~t~~~a~~l~~~L~~~----~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~-----v-~~rGlDi~~v~ 370 (434)
T 2db3_A 301 DGTIVFVETKRGADFLASFLSEK----EFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATS-----V-ASRGLDIKNIK 370 (434)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECG-----G-GTSSCCCTTCC
T ss_pred CCEEEEEeCcHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEch-----h-hhCCCCcccCC
Confidence 34999999999999999988875 56788888888765544333 33 478999994 2 23456677788
Q ss_pred EEEe
Q psy17644 317 FLVL 320 (330)
Q Consensus 317 ~lVv 320 (330)
+||.
T Consensus 371 ~VI~ 374 (434)
T 2db3_A 371 HVIN 374 (434)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 7774
No 139
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=90.58 E-value=1.5 Score=39.92 Aligned_cols=75 Identities=12% Similarity=0.182 Sum_probs=54.7
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.++++.-|..++..++.. +..+..++|+.....+... ++. ...|||||. .+ ....++..
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTN-----VL-ARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECG-----GG-SSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hcCCCccc
Confidence 4578999999999999999988875 5677888888876554333 333 478999994 22 34567778
Q ss_pred ccEEEeecc
Q psy17644 315 VTFLVLDEA 323 (330)
Q Consensus 315 i~~lVvDEa 323 (330)
+.+||.-..
T Consensus 312 ~~~Vi~~~~ 320 (395)
T 3pey_A 312 VSMVVNYDL 320 (395)
T ss_dssp EEEEEESSC
T ss_pred CCEEEEcCC
Confidence 888886443
No 140
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=90.58 E-value=2.1 Score=39.28 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=52.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---hC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---EL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+.++||.|+|+..|..++..+... +..+..++|+.....+...+ +. ...|||||. .+ ....++..+
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~~ 335 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VC-ARGIDVEQV 335 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECG-----GG-TSSCCCTTE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhC----CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcC-----cc-ccCCCccCC
Confidence 568999999999999999998876 56778888888766554333 33 478999994 22 235667788
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 336 ~~Vi~ 340 (412)
T 3fht_A 336 SVVIN 340 (412)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 88774
No 141
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=90.47 E-value=3.3 Score=34.30 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.8
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.|++|+|||..
T Consensus 47 ~~ll~G~~G~GKT~l 61 (250)
T 1njg_A 47 AYLFSGTRGVGKTSI 61 (250)
T ss_dssp EEEEECSTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578899999999943
No 142
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=90.40 E-value=0.46 Score=42.59 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
..+.+++.|++|+|||..
T Consensus 37 ~~~~vll~G~~GtGKT~l 54 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTL 54 (324)
T ss_dssp CCCCCEEECCTTCCCHHH
T ss_pred CCCcEEEECCCCCCHHHH
Confidence 347899999999999943
No 143
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.34 E-value=0.29 Score=46.34 Aligned_cols=28 Identities=18% Similarity=0.189 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
..+++++.|+||||||... .+++..++.
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~ 79 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLL 79 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHH
Confidence 4578999999999999763 344444443
No 144
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.30 E-value=1.5 Score=37.25 Aligned_cols=21 Identities=19% Similarity=0.058 Sum_probs=16.4
Q ss_pred hcCCCcEEEEcCCCChhHHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~ 221 (330)
+-.|.-+++.+++|+|||...
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHH
Confidence 346677888999999999443
No 145
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=90.26 E-value=1.4 Score=40.52 Aligned_cols=72 Identities=7% Similarity=0.114 Sum_probs=51.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||+|+++..|..++..++.. +..+..++|+.....+... ++. ...|||||. .+ ....++..
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-----~~-~~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-----LL-TRGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-----CS-SSSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-----cc-ccCCCccC
Confidence 3568999999999999999998876 5677888888876554333 333 468999993 11 22455667
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+.+||.
T Consensus 327 ~~~Vi~ 332 (400)
T 1s2m_A 327 VNVVIN 332 (400)
T ss_dssp EEEEEE
T ss_pred CCEEEE
Confidence 777664
No 146
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=89.80 E-value=0.24 Score=42.45 Aligned_cols=53 Identities=23% Similarity=0.396 Sum_probs=30.9
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.|.-+++.|++|+||| +|++.++.+...+ .+..++|++- ..-..++...+..+
T Consensus 29 ~G~l~~i~G~pG~GKT-~l~l~~~~~~~~~------~~~~v~~~s~-E~~~~~~~~~~~~~ 81 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKT-TFAAQFIYKGAEE------YGEPGVFVTL-EERARDLRREMASF 81 (251)
T ss_dssp TTCEEEEECCTTSSHH-HHHHHHHHHHHHH------HCCCEEEEES-SSCHHHHHHHHHTT
T ss_pred CCeEEEEEeCCCCCHH-HHHHHHHHHHHHh------cCCCceeecc-cCCHHHHHHHHHHc
Confidence 4567888899999999 4555544433221 2345666653 23455555555543
No 147
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=89.74 E-value=1.7 Score=39.01 Aligned_cols=72 Identities=13% Similarity=0.217 Sum_probs=50.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||+|+|+.-|..+++.++.. +..+..++|+.+....... ++. ...|+|||. .+.. ..++..
T Consensus 237 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~~-Gid~~~ 306 (367)
T 1hv8_A 237 KEFYGLVFCKTKRDTKELASMLRDI----GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-----VMSR-GIDVND 306 (367)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-----THHH-HCCCSC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-----hhhc-CCCccc
Confidence 4678999999999999999988876 5678888888776554332 233 468999993 2221 345566
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+.+||.
T Consensus 307 ~~~Vi~ 312 (367)
T 1hv8_A 307 LNCVIN 312 (367)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 666664
No 148
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=89.32 E-value=1.8 Score=42.84 Aligned_cols=72 Identities=15% Similarity=0.144 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---h-CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---E-LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+.-|.+++..+... ++.+..++||.+.......+ . ....|||||- .+ ...+++.+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~-----a~-~~GID~p~ 335 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATV-----AF-GMGIDKPD 335 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECT-----TS-CTTCCCSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hcCCCccc
Confidence 4678999999999999999998875 67888899988766553332 2 3478999993 11 23456777
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+++||.
T Consensus 336 V~~VI~ 341 (591)
T 2v1x_A 336 VRFVIH 341 (591)
T ss_dssp EEEEEE
T ss_pred ccEEEE
Confidence 888774
No 149
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=89.29 E-value=0.55 Score=43.72 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
..+.+++.|++|+|||..
T Consensus 147 ~~~~vLL~GppGtGKT~l 164 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTML 164 (389)
T ss_dssp CCSEEEEESSTTSCHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 357899999999999943
No 150
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=89.23 E-value=1.4 Score=39.60 Aligned_cols=60 Identities=18% Similarity=0.226 Sum_probs=31.8
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcC----CC-CCCCC----CeEEEEcccHHH-HHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQK----EL-EPGDG----PMGLILAPTREL-SQQIYNEAKRF 263 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~----~~-~~~~~----~~vLil~Ptr~L-a~Qi~~~~~~l 263 (330)
.|+-+++.+++|+|||. +++.++..+.... .. ....+ .+++|+.-...+ ..++...+.++
T Consensus 97 ~g~i~~i~G~~gsGKT~-la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQ-IMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp TTEEEEEEESTTSSHHH-HHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 45678888999999994 4433333321100 00 00112 577777654332 45555555554
No 151
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=89.02 E-value=1.1 Score=41.00 Aligned_cols=74 Identities=11% Similarity=0.070 Sum_probs=52.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||+++++..|..++..+... +..+..++|+......... ++. ...|||||. .+ ....++..
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~-~~Gidi~~ 318 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-----LF-GRGMDIER 318 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-----CC-SSCBCCTT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-----hh-hcCCCccc
Confidence 4578999999999999999988875 5678888888776554333 232 478999993 11 22455677
Q ss_pred ccEEEeec
Q psy17644 315 VTFLVLDE 322 (330)
Q Consensus 315 i~~lVvDE 322 (330)
+.+||.-.
T Consensus 319 ~~~Vi~~~ 326 (391)
T 1xti_A 319 VNIAFNYD 326 (391)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 77777543
No 152
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=88.74 E-value=0.36 Score=44.08 Aligned_cols=18 Identities=33% Similarity=0.414 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++.+++.|++|+|||..
T Consensus 44 ~~~~vli~G~~G~GKTtl 61 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAV 61 (386)
T ss_dssp CCCCEEEEECTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 356899999999999943
No 153
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=88.53 E-value=4.7 Score=37.03 Aligned_cols=71 Identities=10% Similarity=0.183 Sum_probs=51.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---h-CCCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---E-LGAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
..++||.|+|+..|..++..+... +..+..++|+.....+...+ + ....|||||. .+ ...+++..+
T Consensus 276 ~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidi~~v 345 (410)
T 2j0s_A 276 ITQAVIFCNTKRKVDWLTEKMREA----NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTD-----VW-ARGLDVPQV 345 (410)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECG-----GG-SSSCCCTTE
T ss_pred CCcEEEEEcCHHHHHHHHHHHHhC----CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECC-----hh-hCcCCcccC
Confidence 458999999999999999888875 56778888888765543332 2 2478999994 22 235667778
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 346 ~~Vi~ 350 (410)
T 2j0s_A 346 SLIIN 350 (410)
T ss_dssp EEEEE
T ss_pred CEEEE
Confidence 87775
No 154
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=88.38 E-value=1.4 Score=42.73 Aligned_cols=72 Identities=18% Similarity=0.174 Sum_probs=52.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---Hh-CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LE-LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+||.-|..++..++.. ++.+..++|+.+....... +. ....|||||. .+ ...+++.+
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~-----a~-~~GiD~p~ 304 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV-----AF-GMGINKPN 304 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT-----TS-CTTTCCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEec-----hh-hCCCCccC
Confidence 3568999999999999999998875 5678888898876554322 22 3578999994 11 23456777
Q ss_pred ccEEEe
Q psy17644 315 VTFLVL 320 (330)
Q Consensus 315 i~~lVv 320 (330)
+++||.
T Consensus 305 v~~VI~ 310 (523)
T 1oyw_A 305 VRFVVH 310 (523)
T ss_dssp CCEEEE
T ss_pred ccEEEE
Confidence 887775
No 155
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.21 E-value=2 Score=34.40 Aligned_cols=17 Identities=24% Similarity=0.393 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++.+++.|++|+|||..
T Consensus 43 ~~~~ll~G~~G~GKT~l 59 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAI 59 (195)
T ss_dssp SCEEEEECCTTSCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 46799999999999943
No 156
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=88.17 E-value=2.3 Score=42.68 Aligned_cols=77 Identities=14% Similarity=0.223 Sum_probs=56.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---Hh-CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LE-LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|..+...+... ++.+..++|+......... ++ ...+|+|||- .+ ...+++..
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~-----~l-~~GlDip~ 513 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI----GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGIN-----LL-REGLDIPE 513 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESC-----CC-STTCCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc----CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecc-----hh-hCCcccCC
Confidence 4679999999999999999888876 5677778887765554433 33 2478999983 22 34566788
Q ss_pred ccEEEeecccc
Q psy17644 315 VTFLVLDEADR 325 (330)
Q Consensus 315 i~~lVvDEad~ 325 (330)
+.+||+=+++.
T Consensus 514 v~lVi~~d~d~ 524 (661)
T 2d7d_A 514 VSLVAILDADK 524 (661)
T ss_dssp EEEEEETTTTC
T ss_pred CCEEEEeCccc
Confidence 99998887754
No 157
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=88.04 E-value=1.3 Score=42.18 Aligned_cols=87 Identities=21% Similarity=0.148 Sum_probs=42.6
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEECCCchH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA--PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~--Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~ 281 (330)
++-+++++++|+|||.... .|...+.. .+.+++++. +.|.-+. +.+..++...++.+.....+....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~--kLA~~l~~------~G~kVllv~~D~~r~~a~---eqL~~~~~~~gv~~~~~~~~~dp~ 165 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAG--KLAYFYKK------RGYKVGLVAADVYRPAAY---DQLLQLGNQIGVQVYGEPNNQNPI 165 (433)
T ss_dssp SEEEEECCCTTSCHHHHHH--HHHHHHHH------TTCCEEEEEECCSCHHHH---HHHHHHHHTTTCCEECCTTCSCHH
T ss_pred CeEEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEEecCccchhHH---HHHHHHHHhcCCceeeccccCCHH
Confidence 4456777999999994433 22223332 355666655 3444332 334444444455544333333321
Q ss_pred H----HHHHHh-CCCeE-EEEChHHH
Q psy17644 282 D----QSKALE-LGAEI-VVGTPGRI 301 (330)
Q Consensus 282 ~----~~~~l~-~~~dI-iV~TP~~L 301 (330)
. ....+. .++++ ||=||+++
T Consensus 166 ~i~~~al~~a~~~~~DvvIIDTaGr~ 191 (433)
T 3kl4_A 166 EIAKKGVDIFVKNKMDIIIVDTAGRH 191 (433)
T ss_dssp HHHHHHHHHTTTTTCSEEEEEECCCS
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCc
Confidence 1 112222 34555 45677763
No 158
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.01 E-value=1.1 Score=40.68 Aligned_cols=15 Identities=20% Similarity=0.383 Sum_probs=12.8
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.|++|+|||..
T Consensus 38 ~~ll~Gp~G~GKTtl 52 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTR 52 (354)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 489999999999943
No 159
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=87.28 E-value=2.9 Score=33.35 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
.+.+++.|++|+|||..
T Consensus 43 ~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAI 59 (187)
T ss_dssp SCEEEEESCGGGCHHHH
T ss_pred CCceEEECCCCCCHHHH
Confidence 56789999999999943
No 160
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=87.18 E-value=0.49 Score=37.40 Aligned_cols=20 Identities=10% Similarity=0.159 Sum_probs=16.8
Q ss_pred hcCCCcEEEEcCCCChhHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a 220 (330)
...+.++++.|++|+|||..
T Consensus 21 a~~~~~vll~G~~GtGKt~l 40 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTG 40 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHH
T ss_pred hCCCCCEEEECCCCCCHHHH
Confidence 35678999999999999944
No 161
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=87.15 E-value=0.4 Score=37.85 Aligned_cols=19 Identities=16% Similarity=0.052 Sum_probs=16.3
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
...+.++++.+++|+|||.
T Consensus 24 ~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 24 AKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HTCSSCEEEEEETTCCHHH
T ss_pred hCCCCcEEEECCCCccHHH
Confidence 4567899999999999994
No 162
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=87.02 E-value=0.12 Score=42.26 Aligned_cols=55 Identities=13% Similarity=0.187 Sum_probs=39.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---hC-CCeEEEEC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---EL-GAEIVVGT 297 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiV~T 297 (330)
.+.++||.|+|+..|..+...+... +..+..++|+.+.......+ +. ...|||||
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT 87 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT 87 (170)
Confidence 3568999999999999988887765 56777788876654433222 22 36789988
No 163
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.52 E-value=0.7 Score=41.73 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=14.9
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++.+++.|++|+|||..
T Consensus 152 ~~~lll~G~~GtGKT~L 168 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYL 168 (308)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CceEEEECCCCCCHHHH
Confidence 68899999999999943
No 164
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.49 E-value=1.5 Score=36.26 Aligned_cols=16 Identities=25% Similarity=0.202 Sum_probs=14.2
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
+.+++.|++|+|||..
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999953
No 165
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.36 E-value=3.1 Score=46.90 Aligned_cols=41 Identities=17% Similarity=0.181 Sum_probs=27.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
.|+.+++++|+|+|||...+. ++..... +|.+++|+.....
T Consensus 1426 ~g~~vll~GppGtGKT~LA~a-la~ea~~-------~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQ-VIAAAQR-------EGKTCAFIDAEHA 1466 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHH-HHHHHHT-------TTCCEEEECTTSC
T ss_pred CCeEEEEECCCCCCHHHHHHH-HHHHHHH-------cCCcEEEEEcccc
Confidence 478999999999999954432 2222222 4678888876543
No 166
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=85.23 E-value=1.8 Score=36.23 Aligned_cols=19 Identities=26% Similarity=0.101 Sum_probs=15.4
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+..|.-+.+++++|+|||.
T Consensus 22 i~~G~~~~l~G~nGsGKST 40 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQ 40 (231)
T ss_dssp EESSEEEEEEESTTSSHHH
T ss_pred CCCCcEEEEECCCCCCHHH
Confidence 4466778888999999994
No 167
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=85.21 E-value=2.5 Score=39.26 Aligned_cols=93 Identities=15% Similarity=0.170 Sum_probs=56.4
Q ss_pred CCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEC--------CCchHHHH
Q psy17644 213 TGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYG--------GGSKWDQS 284 (330)
Q Consensus 213 TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~g--------g~~~~~~~ 284 (330)
..++|. ..+.-++...+.. ..+.++||.++++..+..+...+... ++.+..+.| +.+..++.
T Consensus 340 ~~~~k~-~~l~~~l~~~~~~-----~~~~k~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~g~~~~~~~~~~~~~~r~ 409 (494)
T 1wp9_A 340 LDHPKM-DKLKEIIREQLQR-----KQNSKIIVFTNYRETAKKIVNELVKD----GIKAKRFVGQASKENDRGLSQREQK 409 (494)
T ss_dssp CSCHHH-HHHHHHHHHHHHH-----CTTCCEEEECSCHHHHHHHHHHHHHT----TCCEEEECCSSCC-------CCHHH
T ss_pred CCChHH-HHHHHHHHHHhcc-----CCCCeEEEEEccHHHHHHHHHHHHHc----CCCcEEEeccccccccccCCHHHHH
Confidence 344554 3344445444422 14678999999999999999988876 667788888 55443332
Q ss_pred ---HHHh-CCCeEEEEChHHHHHHHHcCCCCCCCccEEEee
Q psy17644 285 ---KALE-LGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLD 321 (330)
Q Consensus 285 ---~~l~-~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVvD 321 (330)
..++ ..+.|||||. .+ ...+++..+.+||+=
T Consensus 410 ~~~~~F~~~~~~vLv~T~-----~~-~~Gldl~~~~~Vi~~ 444 (494)
T 1wp9_A 410 LILDEFARGEFNVLVATS-----VG-EEGLDVPEVDLVVFY 444 (494)
T ss_dssp HHHHHHHHTSCSEEEECG-----GG-GGGGGSTTCCEEEES
T ss_pred HHHHHHhcCCceEEEECC-----cc-ccCCCchhCCEEEEe
Confidence 2222 2478999993 11 124456667777653
No 168
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.06 E-value=1.4 Score=40.15 Aligned_cols=43 Identities=23% Similarity=0.164 Sum_probs=28.7
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L 252 (330)
.| -+++.+++|+||| .+++.++....++ ..+.+++++..-..+
T Consensus 28 ~G-iteI~G~pGsGKT-tL~Lq~~~~~~~~-----g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 28 SG-LLILAGPSKSFKS-NFGLTMVSSYMRQ-----YPDAVCLFYDSEFGI 70 (333)
T ss_dssp SE-EEEEEESSSSSHH-HHHHHHHHHHHHH-----CTTCEEEEEESSCCC
T ss_pred CC-eEEEECCCCCCHH-HHHHHHHHHHHhc-----CCCceEEEEeccchh
Confidence 35 4677899999999 4555666555442 125688888765555
No 169
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=85.03 E-value=1.3 Score=39.84 Aligned_cols=19 Identities=32% Similarity=0.483 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChhHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~ 221 (330)
.++-+++++++|+|||...
T Consensus 104 ~g~vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTL 122 (296)
T ss_dssp CSSEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5677888899999999443
No 170
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=84.86 E-value=1 Score=41.83 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+.+++++|+||+|||..
T Consensus 34 ~~~~~~i~G~~G~GKs~~ 51 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFT 51 (392)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred ccCceEEEcCCCCCHHHH
Confidence 567899999999999954
No 171
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=84.81 E-value=1.5 Score=42.80 Aligned_cols=17 Identities=29% Similarity=0.349 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|..+++.+|+|+|||.
T Consensus 107 ~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTS 123 (543)
T ss_dssp CSCEEEEESSSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 57889999999999994
No 172
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=84.59 E-value=1 Score=39.64 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=15.8
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+..|.-+++++|||||||.
T Consensus 22 i~~g~~v~i~Gp~GsGKST 40 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKST 40 (261)
T ss_dssp GCSSEEEEEECSTTCSHHH
T ss_pred hCCCCEEEEECCCCccHHH
Confidence 4567778889999999983
No 173
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=84.50 E-value=1.5 Score=46.89 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=58.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---Hh-CCCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LE-LGAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~-~~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.+++|+|+++.-|..++..+++... +.++..++|+......... +. ...+|||||- ++. ..+++.+
T Consensus 811 ~g~qvlvf~~~v~~~~~l~~~L~~~~p--~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-----v~e-~GiDip~ 882 (1151)
T 2eyq_A 811 RGGQVYYLYNDVENIQKAAERLAELVP--EARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-----IIE-TGIDIPT 882 (1151)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHHCT--TSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-----TTG-GGSCCTT
T ss_pred cCCeEEEEECCHHHHHHHHHHHHHhCC--CCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-----cce-eeecccC
Confidence 467899999999999999999988743 4677888888776544322 33 3579999994 222 3567888
Q ss_pred ccEEEeecccc
Q psy17644 315 VTFLVLDEADR 325 (330)
Q Consensus 315 i~~lVvDEad~ 325 (330)
+.+||+..++.
T Consensus 883 v~~VIi~~~~~ 893 (1151)
T 2eyq_A 883 ANTIIIERADH 893 (1151)
T ss_dssp EEEEEETTTTS
T ss_pred CcEEEEeCCCC
Confidence 99999877754
No 174
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=84.14 E-value=1.7 Score=40.98 Aligned_cols=54 Identities=7% Similarity=-0.076 Sum_probs=38.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh-CCCeEEEECh
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE-LGAEIVVGTP 298 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiV~TP 298 (330)
+.++||+|||+.-|..++..+++. +.++..++|+. .......++ ...+|||||-
T Consensus 171 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~v~~lhg~~-r~~~~~~f~~g~~~vLVaT~ 225 (431)
T 2v6i_A 171 DGRTVWFVHSIKQGAEIGTCLQKA----GKKVLYLNRKT-FESEYPKCKSEKWDFVITTD 225 (431)
T ss_dssp SSCEEEECSSHHHHHHHHHHHHHT----TCCEEEESTTT-HHHHTTHHHHSCCSEEEECG
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCeEEEeCCcc-HHHHHHhhcCCCCeEEEECc
Confidence 457999999999999999998876 56777777763 222223333 3478898883
No 175
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=84.09 E-value=4.7 Score=40.34 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=55.5
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.|+|+..|..+...+... ++.+..++|+......... ++. ..+|+|||- .+ ...+++..
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~----gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~-----~l-~~GlDip~ 507 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEH----GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGIN-----LL-REGLDIPE 507 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESC-----CC-CTTCCCTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhc----CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccC-----hh-hcCccCCC
Confidence 3679999999999999999888876 5677778887765554433 333 478999982 22 23556778
Q ss_pred ccEEEeecccc
Q psy17644 315 VTFLVLDEADR 325 (330)
Q Consensus 315 i~~lVvDEad~ 325 (330)
+.+||+=+++.
T Consensus 508 v~lVI~~d~d~ 518 (664)
T 1c4o_A 508 VSLVAILDADK 518 (664)
T ss_dssp EEEEEETTTTS
T ss_pred CCEEEEeCCcc
Confidence 88888766643
No 176
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=83.20 E-value=3.3 Score=37.30 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=13.5
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++-+++++++|+|||..
T Consensus 103 ~~~vi~ivG~~GsGKTTl 120 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTS 120 (306)
T ss_dssp SCEEEEEECCTTSSHHHH
T ss_pred CCeEEEEEcCCCChHHHH
Confidence 345567789999999943
No 177
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=83.18 E-value=10 Score=38.74 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=54.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhc-------cCCCceEEEEECCCchHHHHHHHhC---------CCeEEEEChHHHHH
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFG-------KGYNLSVVCCYGGGSKWDQSKALEL---------GAEIVVGTPGRIID 303 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~-------~~~~~~~~~~~gg~~~~~~~~~l~~---------~~dIiV~TP~~L~~ 303 (330)
+.++||.+|++.-|..++..+...+ ...++.+..++|+.+...+...+.. ...|||||.
T Consensus 303 ~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~----- 377 (773)
T 2xau_A 303 AGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTN----- 377 (773)
T ss_dssp SCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECT-----
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCc-----
Confidence 5789999999999999999887532 2246788899999988776555432 358999994
Q ss_pred HHHcCCCCCCCccEEE
Q psy17644 304 MVKMGATKLNRVTFLV 319 (330)
Q Consensus 304 ~l~~~~~~l~~i~~lV 319 (330)
.+.. .+++..+.+||
T Consensus 378 iae~-GidIp~v~~VI 392 (773)
T 2xau_A 378 IAET-SLTIDGIVYVV 392 (773)
T ss_dssp HHHH-TCCCTTEEEEE
T ss_pred HHHh-CcCcCCeEEEE
Confidence 3332 55677888776
No 178
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=83.15 E-value=1.1 Score=37.49 Aligned_cols=19 Identities=32% Similarity=0.221 Sum_probs=15.6
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+..|.-+++.+++|+|||.
T Consensus 20 i~~G~~~~i~G~~GsGKTt 38 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTI 38 (235)
T ss_dssp EETTCEEEEECSTTSSHHH
T ss_pred CcCCCEEEEEcCCCCCHHH
Confidence 4467778888999999994
No 179
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.85 E-value=2.2 Score=40.58 Aligned_cols=39 Identities=18% Similarity=0.139 Sum_probs=26.9
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP 248 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P 248 (330)
..|.=+++.|++|+||| +|++.++.++..+ +.+|+|++-
T Consensus 195 ~~G~liiIaG~pG~GKT-tlal~ia~~~a~~-------g~~vl~fSl 233 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKT-AFALKQAKNMSDN-------DDVVNLHSL 233 (444)
T ss_dssp CSSCEEEEEECSSSSHH-HHHHHHHHHHHHT-------TCEEEEECS
T ss_pred CCCcEEEEEeCCCCChH-HHHHHHHHHHHHc-------CCEEEEEEC
Confidence 35566777899999999 5666666665542 456777764
No 180
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=82.78 E-value=1.6 Score=36.67 Aligned_cols=18 Identities=22% Similarity=0.091 Sum_probs=15.4
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++.+++.|++|+|||..
T Consensus 51 ~~~~~ll~G~~G~GKT~l 68 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHL 68 (242)
T ss_dssp SCSEEEEECSTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 468899999999999943
No 181
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=82.25 E-value=1.8 Score=41.00 Aligned_cols=68 Identities=10% Similarity=0.085 Sum_probs=44.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccEE
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFL 318 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~l 318 (330)
+.++||+|||+.-|..++..++.. +.++..++|. ........++. ..+|||||. .+. ...++. +.+|
T Consensus 177 ~~~~lVF~~s~~~a~~l~~~L~~~----~~~v~~lhg~-~R~~~~~~F~~g~~~vLVaT~-----v~e-~GiDip-v~~V 244 (440)
T 1yks_A 177 KRPTAWFLPSIRAANVMAASLRKA----GKSVVVLNRK-TFEREYPTIKQKKPDFILATD-----IAE-MGANLC-VERV 244 (440)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEECCSS-SCC--------CCCSEEEESS-----STT-CCTTCC-CSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHc----CCCEEEecch-hHHHHHhhhcCCCceEEEECC-----hhh-eeeccC-ceEE
Confidence 568999999999999999998876 5677777773 33333334443 479999993 222 344566 7776
Q ss_pred E
Q psy17644 319 V 319 (330)
Q Consensus 319 V 319 (330)
|
T Consensus 245 I 245 (440)
T 1yks_A 245 L 245 (440)
T ss_dssp E
T ss_pred E
Confidence 6
No 182
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=81.67 E-value=5.9 Score=35.75 Aligned_cols=40 Identities=15% Similarity=0.243 Sum_probs=25.4
Q ss_pred CHHHHHhhhhhc----CCC---cEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 191 TPIQAQAVPAAL----SGR---DIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 191 t~iQ~~~i~~~~----~g~---d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
.|+|..++..+. +|+ -+++.|+.|+|||... ..+...+..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a-~~la~~l~~ 50 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALI-YALSRYLLC 50 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHH-HHHHHHHTC
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHH-HHHHHHHhC
Confidence 477777665543 444 4888999999999433 334444443
No 183
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.37 E-value=1.6 Score=40.54 Aligned_cols=29 Identities=17% Similarity=0.171 Sum_probs=21.2
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
-.|+-+++.+++|+||| ++++.++.++..
T Consensus 72 ~~G~li~I~G~pGsGKT-tlal~la~~~~~ 100 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKT-TLALAIVAQAQK 100 (366)
T ss_dssp ETTSEEEEEESTTSSHH-HHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChH-HHHHHHHHHHHH
Confidence 35677888899999999 566666666544
No 184
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=81.23 E-value=1.7 Score=40.14 Aligned_cols=39 Identities=18% Similarity=0.190 Sum_probs=25.3
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP 248 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P 248 (330)
-.|+-+++.+++|+|||. +++.++..+... +.+++|+..
T Consensus 61 ~~G~ii~I~G~pGsGKTt-Lal~la~~~~~~-------g~~vlyid~ 99 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTT-LTLQVIAAAQRE-------GKTCAFIDA 99 (356)
T ss_dssp ETTSEEEEECSTTSSHHH-HHHHHHHHHHHT-------TCCEEEEES
T ss_pred cCCeEEEEECCCCCCHHH-HHHHHHHHHHHC-------CCeEEEEeC
Confidence 356778888999999994 445555554432 345566554
No 185
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.19 E-value=1.6 Score=40.09 Aligned_cols=29 Identities=24% Similarity=0.151 Sum_probs=20.2
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
-.|+-+++.+++|+|||. +++.++..+..
T Consensus 59 ~~G~iv~I~G~pGsGKTt-Lal~la~~~~~ 87 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTT-VALHAVANAQA 87 (349)
T ss_dssp ETTSEEEEEESTTSSHHH-HHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHH-HHHHHHHHHHh
Confidence 356778888999999994 44555544443
No 186
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=80.97 E-value=1.1 Score=37.39 Aligned_cols=61 Identities=16% Similarity=0.138 Sum_probs=40.9
Q ss_pred CHHHHHhhhhhcCCC--cEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHH
Q psy17644 191 TPIQAQAVPAALSGR--DIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~--d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~ 258 (330)
++-|..++..++..+ -.++.+.-|++||...+.-++ ++... .|.+|.||+|+..-.....+
T Consensus 36 ~~~~~~a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~-~~a~~------~Gr~V~vLAp~~~s~~~l~~ 98 (189)
T 2l8b_A 36 TAGYSDAVSVLAQDRPSLAIVSGQGGAAGQRERVAELV-MMARE------QGREVQIIAADRRSQMNMKQ 98 (189)
T ss_dssp HHHHHHHHHHHHHHSCCEECCBCSSCSHHHHHHHHHHH-HHHHH------TTCCEEEECSTTHHHHHHSC
T ss_pred CccchhHHHHHhccCCceEEEecccchHHHHHHHHHHH-HHHHh------cCeEEEEEcCchHHHHHHHh
Confidence 466888888887443 344458889999976433332 22222 68899999999887665444
No 187
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=80.83 E-value=4.8 Score=38.04 Aligned_cols=88 Identities=23% Similarity=0.240 Sum_probs=42.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc--ccHHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA--PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~--Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
.++-+++++++|+|||.... .|...+.. .+.+++++. +.|..+...... ++...++.+.....+...
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~--~LA~~l~~------~g~~Vllvd~D~~r~aa~~qL~~---~~~~~gv~v~~~~~~~~p 165 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAA--KLALYYKG------KGRRPLLVAADTQRPAAREQLRL---LGEKVGVPVLEVMDGESP 165 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHH--HHHHHHHT------TTCCEEEEECCSSCHHHHHHHHH---HHHHHTCCEEECCTTCCH
T ss_pred CCeEEEEECCCCCCHHHHHH--HHHHHHHH------cCCeEEEeeccccCchhHHHHHH---hcccCCccEEecCCCCCH
Confidence 44556777999999994433 22333332 245565554 344444332222 222234444332222222
Q ss_pred H----HHHHHH-hCCCe-EEEEChHHH
Q psy17644 281 W----DQSKAL-ELGAE-IVVGTPGRI 301 (330)
Q Consensus 281 ~----~~~~~l-~~~~d-IiV~TP~~L 301 (330)
. .....+ ..++| |||=||+++
T Consensus 166 ~~i~~~~l~~~~~~~~DvVIIDTaG~l 192 (425)
T 2ffh_A 166 ESIRRRVEEKARLEARDLILVDTAGRL 192 (425)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCCCS
T ss_pred HHHHHHHHHHHHHCCCCEEEEcCCCcc
Confidence 1 122333 25666 566788764
No 188
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=80.76 E-value=2.1 Score=42.95 Aligned_cols=67 Identities=16% Similarity=0.232 Sum_probs=49.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhCCCeEEEEChHHHHHHHHcCCCCCCCccEE
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFL 318 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~L~~~l~~~~~~l~~i~~l 318 (330)
.+.++||.++|+.-|.++++.+++. ++.+..++|+.....+ .+.+.+|||||- .+.++. ++. +++|
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g~~v~~lHG~l~q~er---~~~~~~VLVATd-----VaerGI-DId-V~~V 460 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----GINAVAYYRGLDVSVI---PTIGDVVVVATD-----ALMTGY-TGD-FDSV 460 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----TCCEEEECTTSCGGGS---CSSSCEEEEECT-----THHHHC-CCC-BSEE
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----CCcEEEecCCCCHHHH---HhCCCcEEEECC-----hHHccC-CCC-CcEE
Confidence 4578999999999999999988865 6788889998876542 234569999994 444333 354 8877
Q ss_pred E
Q psy17644 319 V 319 (330)
Q Consensus 319 V 319 (330)
|
T Consensus 461 I 461 (666)
T 3o8b_A 461 I 461 (666)
T ss_dssp E
T ss_pred E
Confidence 7
No 189
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=80.68 E-value=4.2 Score=36.53 Aligned_cols=15 Identities=13% Similarity=-0.117 Sum_probs=12.7
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
..++.||.|+|||.+
T Consensus 20 ~~Lf~Gp~G~GKtt~ 34 (305)
T 2gno_A 20 SILINGEDLSYPREV 34 (305)
T ss_dssp EEEEECSSSSHHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 578889999999843
No 190
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=80.63 E-value=4.2 Score=38.81 Aligned_cols=94 Identities=15% Similarity=0.113 Sum_probs=52.9
Q ss_pred ChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEC--------CCchHHH---
Q psy17644 215 SGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYG--------GGSKWDQ--- 283 (330)
Q Consensus 215 sGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~g--------g~~~~~~--- 283 (330)
++|. ..+..+|...+... .+.++||.|+++..|..+...+...+....+.+..++| +.+..++
T Consensus 370 ~~k~-~~l~~~l~~~~~~~-----~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~ 443 (555)
T 3tbk_A 370 NPKL-RDLYLVLQEEYHLK-----PETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCV 443 (555)
T ss_dssp CHHH-HHHHHHHHHHHHHC-----TTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC------------------
T ss_pred CHHH-HHHHHHHHHHhccC-----CCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHH
Confidence 4554 33444454444321 35789999999999999999998865433344444444 4433333
Q ss_pred HHHHhC--CCeEEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 284 SKALEL--GAEIVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 284 ~~~l~~--~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
...++. ..+|||||- .+ ...+++..+.+||.
T Consensus 444 ~~~F~~~g~~~vLvaT~-----~~-~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 444 LEAFRASGDNNILIATS-----VA-DEGIDIAECNLVIL 476 (555)
T ss_dssp --------CCSEEEECC-----CT-TCCEETTSCSEEEE
T ss_pred HHHHhcCCCeeEEEEcc-----hh-hcCCccccCCEEEE
Confidence 233333 368999993 22 23456778888875
No 191
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=80.62 E-value=10 Score=36.08 Aligned_cols=76 Identities=12% Similarity=0.076 Sum_probs=48.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHH---HH-hCCCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK---AL-ELGAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~---~l-~~~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+...+|++..+.-|..+.+.+... +.++..+.|+........ .+ ....+|||||+..+-. .+++..+
T Consensus 347 ~~~~~ivf~~~~~~~~l~~~L~~~----~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~-----GiDip~v 417 (510)
T 2oca_A 347 DENAFVMFKHVSHGKAIFDLIKNE----YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFST-----GISVKNL 417 (510)
T ss_dssp TCEEEEEESSHHHHHHHHHHHHTT----CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHH-----SCCCCSE
T ss_pred CCCeEEEEecHHHHHHHHHHHHHc----CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhc-----ccccccC
Confidence 445555555566676666666654 347788888877554332 22 2346899999655542 4567788
Q ss_pred cEEEeeccc
Q psy17644 316 TFLVLDEAD 324 (330)
Q Consensus 316 ~~lVvDEad 324 (330)
.+||+..+.
T Consensus 418 ~~vi~~~~~ 426 (510)
T 2oca_A 418 HHVVLAHGV 426 (510)
T ss_dssp EEEEESSCC
T ss_pred cEEEEeCCC
Confidence 888876655
No 192
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.42 E-value=0.76 Score=40.37 Aligned_cols=52 Identities=19% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHH-HHhhh--hhcCCCcEEEEcCCCChhHHH
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQ-AQAVP--AALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ-~~~i~--~~~~g~d~i~~a~TGsGKT~a 220 (330)
-.+|.++.-....++.+...-.. +.+ ...+. .+..++.+++.|++|+|||..
T Consensus 13 ~~~~~~i~G~~~~~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~l 67 (285)
T 3h4m_A 13 NVRYEDIGGLEKQMQEIREVVEL---PLKHPELFEKVGIEPPKGILLYGPPGTGKTLL 67 (285)
T ss_dssp CCCGGGSCSCHHHHHHHHHHTHH---HHHCHHHHHHHCCCCCSEEEEESSSSSSHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHH---HhhCHHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 34588876666666655432100 000 01111 123567899999999999943
No 193
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=80.30 E-value=3 Score=44.65 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=31.1
Q ss_pred EEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 208 IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 208 i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
++.|..|||||. .++.-+.+++.+. ..+.++|+|||.. +..++...+..
T Consensus 5 lV~agAGSGKT~-~l~~ri~~ll~~~----~~~~~il~lVP~q-~TFt~~~rl~~ 53 (1166)
T 3u4q_B 5 FLVGRSGSGKTK-LIINSIQDELRRA----PFGKPIIFLVPDQ-MTFLMEYELAK 53 (1166)
T ss_dssp EEEECTTSSHHH-HHHHHHHHHHHHC----TTSSCEEEECCGG-GHHHHHHHHTC
T ss_pred EEEeCCCCChHH-HHHHHHHHHHHhC----CCCCcEEEEecCc-ccHHHHHHHHH
Confidence 677999999995 4444455555542 1457899999976 33444444433
No 194
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=79.99 E-value=3.8 Score=36.27 Aligned_cols=69 Identities=7% Similarity=0.048 Sum_probs=46.9
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
.+.++||.++|+..+..++..+. .+..++|+......... ++. ..+|||||. .+. ...++..
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~--------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-----~~~-~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD--------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-----VAS-RGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT--------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-----HHH-TTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh--------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-----ccc-cCCCccC
Confidence 46789999999999887766544 35667777765544333 222 478999994 333 3566778
Q ss_pred ccEEEee
Q psy17644 315 VTFLVLD 321 (330)
Q Consensus 315 i~~lVvD 321 (330)
+.+||.-
T Consensus 285 ~~~Vi~~ 291 (337)
T 2z0m_A 285 VEKVINF 291 (337)
T ss_dssp BSEEEES
T ss_pred CCEEEEe
Confidence 8888763
No 195
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=79.73 E-value=2.2 Score=37.77 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.0
Q ss_pred hcCCCcEEEEcCCCChhHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a 220 (330)
+..|.=+++.|++|+|||..
T Consensus 32 l~~G~~~~i~G~~G~GKTTl 51 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTF 51 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHH
Confidence 44677788889999999943
No 196
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=79.70 E-value=7.3 Score=35.60 Aligned_cols=18 Identities=28% Similarity=0.150 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|+=+.+.+++|+|||..
T Consensus 130 ~G~i~~I~G~~GsGKTTL 147 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQL 147 (349)
T ss_dssp SSEEEEEEESTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 566788889999999943
No 197
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=79.63 E-value=1.6 Score=40.27 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=25.6
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEccc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Pt 249 (330)
.|+-+++.+++|+||| ++++.++..+.. .+.+++++..-
T Consensus 60 ~G~i~~I~GppGsGKS-TLal~la~~~~~-------~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKT-TLALHAIAEAQK-------MGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHH-HHHHHHHHHHHH-------TTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHH-HHHHHHHHHHHh-------cCCeEEEEecc
Confidence 4667888899999999 455555555443 24456666543
No 198
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=79.44 E-value=9.2 Score=38.30 Aligned_cols=76 Identities=16% Similarity=0.137 Sum_probs=53.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccC--C------------------------------CceEEEEECCCchHHHHHH
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKG--Y------------------------------NLSVVCCYGGGSKWDQSKA 286 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~--~------------------------------~~~~~~~~gg~~~~~~~~~ 286 (330)
.+.++||.+|+|.-|..++..+...... . ...+..++||.+...+...
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 3578999999999999999998875322 0 1247788999887665443
Q ss_pred Hh----CCCeEEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 287 LE----LGAEIVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 287 l~----~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
.. ....|||||. .+ ....++..+.+||-
T Consensus 331 ~~~f~~g~~~vlvaT~-----~l-~~Gidip~~~~VI~ 362 (715)
T 2va8_A 331 EEGFRQRKIKVIVATP-----TL-AAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHHTTCSCEEEECG-----GG-GGSSCCCBSEEEEC
T ss_pred HHHHHcCCCeEEEECh-----HH-hcccCCCceEEEEe
Confidence 32 3478999994 22 23567788877663
No 199
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=79.36 E-value=1.1 Score=41.62 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=18.0
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.++.+. |+||||||.+
T Consensus 96 lv~~~l~G~N~tifAYGQTGSGKTyT 121 (359)
T 3nwn_A 96 VVSQALDGYNGTIMCYGQTGAGKTYT 121 (359)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCCEEEEEeCCCCCCccEE
Confidence 45666788875444 9999999965
No 200
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=79.03 E-value=2 Score=40.41 Aligned_cols=25 Identities=36% Similarity=0.484 Sum_probs=19.0
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
++..++.|.++.+. |+||||||.+.
T Consensus 132 lv~~~l~G~N~tifAYGqTGSGKTyTM 158 (403)
T 4etp_A 132 LVQSSLDGYNVAIFAYGQTGSGKTFTM 158 (403)
T ss_dssp HHHHHHTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHHhCCcceEEEEECCCCCCCceEe
Confidence 56677789885444 99999999654
No 201
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=78.57 E-value=3.7 Score=35.91 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=18.1
Q ss_pred hhhhcCCCcEEEEcCCCChhHHH
Q psy17644 198 VPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 198 i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
++-+..|.-+++.+++|+|||..
T Consensus 24 lggl~~G~i~~i~G~~GsGKTtl 46 (279)
T 1nlf_A 24 LPNMVAGTVGALVSPGGAGKSML 46 (279)
T ss_dssp ETTEETTSEEEEEESTTSSHHHH
T ss_pred ECCccCCCEEEEEcCCCCCHHHH
Confidence 34455788889999999999943
No 202
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.42 E-value=0.82 Score=43.51 Aligned_cols=54 Identities=13% Similarity=0.202 Sum_probs=34.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCC---CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCE---YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~---~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
.|-.+|++.+--....+.|...- +..|.-++...++ ..+.+++.||+|+|||+.
T Consensus 175 ~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~---~prGvLLyGPPGTGKTll 231 (434)
T 4b4t_M 175 KPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR---APKGALMYGPPGTGKTLL 231 (434)
T ss_dssp SCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC---CCCEEEEESCTTSSHHHH
T ss_pred CCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCeeEEECcCCCCHHHH
Confidence 46678999987777666665421 1223333332222 247899999999999944
No 203
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=78.32 E-value=1.7 Score=42.25 Aligned_cols=37 Identities=22% Similarity=-0.038 Sum_probs=23.8
Q ss_pred HHHHCCCCCCCHHHHHhhhh-hcCCCcEEEEcCCCChhHH
Q psy17644 181 ALRKCEYTSPTPIQAQAVPA-ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 181 ~l~~~~~~~pt~iQ~~~i~~-~~~g~d~i~~a~TGsGKT~ 219 (330)
.+.+.|. +++.+...+.. +..|..++++|+||||||.
T Consensus 238 ~l~~~G~--~~~~~l~~l~~~v~~g~~i~I~GptGSGKTT 275 (511)
T 2oap_1 238 DLIEKGT--VPSGVLAYLWLAIEHKFSAIVVGETASGKTT 275 (511)
T ss_dssp HHHHTTS--SCHHHHHHHHHHHHTTCCEEEEESTTSSHHH
T ss_pred hHHhcCC--CCHHHHHHHHHHHhCCCEEEEECCCCCCHHH
Confidence 3444452 33444444433 3478889999999999993
No 204
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.92 E-value=3 Score=39.33 Aligned_cols=17 Identities=35% Similarity=0.376 Sum_probs=13.5
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+++++|||||||.
T Consensus 166 ~ggii~I~GpnGSGKTT 182 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKST 182 (418)
T ss_dssp SSEEEEEECSTTSCHHH
T ss_pred cCCeEEEECCCCCCHHH
Confidence 44557788999999993
No 205
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=77.91 E-value=1.3 Score=35.93 Aligned_cols=21 Identities=24% Similarity=0.224 Sum_probs=17.1
Q ss_pred hhcCCCcEEEEcCCCChhHHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~a 220 (330)
.+..++.++++|++|||||..
T Consensus 7 ~~~~~~~i~i~G~~GsGKst~ 27 (180)
T 3iij_A 7 EFMLLPNILLTGTPGVGKTTL 27 (180)
T ss_dssp TTCCCCCEEEECSTTSSHHHH
T ss_pred ccccCCeEEEEeCCCCCHHHH
Confidence 345678899999999999944
No 206
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=77.84 E-value=3.8 Score=35.07 Aligned_cols=18 Identities=22% Similarity=0.242 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
..+.+++.|++|+|||..
T Consensus 38 ~~~~vll~G~~GtGKT~l 55 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLL 55 (262)
T ss_dssp CCCEEEEESCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 346799999999999943
No 207
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=77.83 E-value=3 Score=38.25 Aligned_cols=71 Identities=10% Similarity=0.187 Sum_probs=43.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHH---HhC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA---LEL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~---l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+.++||.++++..|..++..+... +..+..++|+.....+... ++. ...|||||. .+ ...+++..+
T Consensus 280 ~~~~lvf~~~~~~~~~l~~~l~~~----~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~-----~~-~~Gidip~v 349 (414)
T 3eiq_A 280 ITQAVIFINTRRKVDWLTEKMHAR----DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTD-----LL-ARGIDVQQV 349 (414)
T ss_dssp CSSCEEECSCHHHHHHHHHHHHTT----TCCCEEC---CHHHHHHHHHHHHSCC---CEEECS-----SC-C--CCGGGC
T ss_pred CCcEEEEeCCHHHHHHHHHHHHhc----CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECC-----cc-ccCCCccCC
Confidence 468999999999999998888764 5677788888776554333 333 367999993 11 123445566
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 350 ~~Vi~ 354 (414)
T 3eiq_A 350 SLVIN 354 (414)
T ss_dssp SCEEE
T ss_pred CEEEE
Confidence 66654
No 208
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=77.75 E-value=3.1 Score=37.73 Aligned_cols=18 Identities=33% Similarity=0.663 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++.+++.||+|+|||..
T Consensus 69 ~~~~vLl~GppGtGKT~l 86 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAI 86 (368)
T ss_dssp TTCEEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 357899999999999943
No 209
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=77.74 E-value=1.3 Score=40.33 Aligned_cols=24 Identities=33% Similarity=0.292 Sum_probs=17.1
Q ss_pred hhhhhcCCCcEEE--EcCCCChhHHH
Q psy17644 197 AVPAALSGRDIIG--VAKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~--~a~TGsGKT~a 220 (330)
++..++.|.+..+ -|+||||||.+
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyT 94 (325)
T 1bg2_A 69 IVKDVLEGYNGTIFAYGQTSSGKTHT 94 (325)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred hHHHHhCCCeEEEEEECCCCCCCceE
Confidence 3445678887444 39999999955
No 210
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=77.30 E-value=1.6 Score=40.15 Aligned_cols=26 Identities=38% Similarity=0.511 Sum_probs=19.8
Q ss_pred HhhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 196 QAVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 196 ~~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
.++..++.|.++.+. |+||||||.+.
T Consensus 76 ~lv~~~l~G~n~tifAYGqTGSGKTyTm 103 (349)
T 3t0q_A 76 QLVQSSLDGYNVCIFAYGQTGSGKTYTM 103 (349)
T ss_dssp HHHHGGGTTCEEEEEEECSTTSSHHHHH
T ss_pred HHHHHHHCCcceeEEEeCCCCCCCceEe
Confidence 367778899885444 99999999654
No 211
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=76.88 E-value=1.8 Score=39.87 Aligned_cols=26 Identities=38% Similarity=0.496 Sum_probs=19.3
Q ss_pred HhhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 196 QAVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 196 ~~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
.++..++.|.++.+. |+||||||.+.
T Consensus 75 ~lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 75 QLVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhcCCceeEEEEECCCCCCCcEec
Confidence 356777888875444 99999999654
No 212
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=76.85 E-value=1.4 Score=40.79 Aligned_cols=24 Identities=33% Similarity=0.331 Sum_probs=17.2
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.+..+. |+||||||.+
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyT 101 (365)
T 2y65_A 76 IVTDVLAGYNGTIFAYGQTSSGKTHT 101 (365)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCCceEEEeecCCCCCCceE
Confidence 34456688875443 9999999965
No 213
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=76.84 E-value=8.3 Score=38.72 Aligned_cols=74 Identities=15% Similarity=0.141 Sum_probs=54.4
Q ss_pred CeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchH---HHHHHHhC---CCeEEEEChHHHHHHHHcCCCCCCC
Q psy17644 241 PMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW---DQSKALEL---GAEIVVGTPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 241 ~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~---~~~~~l~~---~~dIiV~TP~~L~~~l~~~~~~l~~ 314 (330)
+..+|+++|+.-+.+++..+.+. +..+..++|+.... .+...++. ..+|||||- .+. ..+++ .
T Consensus 321 ~g~iIf~~s~~~ie~la~~L~~~----g~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATd-----i~e-~GlDi-~ 389 (677)
T 3rc3_A 321 PGDCIVCFSKNDIYSVSRQIEIR----GLESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATD-----AIG-MGLNL-S 389 (677)
T ss_dssp TTEEEECSSHHHHHHHHHHHHHT----TCCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECG-----GGG-SSCCC-C
T ss_pred CCCEEEEcCHHHHHHHHHHHHhc----CCCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCc-----HHH-CCcCc-C
Confidence 34477799999999888888874 57888999998876 44555554 379999994 333 45667 8
Q ss_pred ccEEEeecccc
Q psy17644 315 VTFLVLDEADR 325 (330)
Q Consensus 315 i~~lVvDEad~ 325 (330)
+.+||.-.+.+
T Consensus 390 v~~VI~~~~~k 400 (677)
T 3rc3_A 390 IRRIIFYSLIK 400 (677)
T ss_dssp BSEEEESCSBC
T ss_pred ccEEEECCccc
Confidence 99998866643
No 214
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=76.79 E-value=1.9 Score=35.84 Aligned_cols=17 Identities=24% Similarity=0.450 Sum_probs=13.5
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|+-++++||+|+|||.
T Consensus 3 ~g~~i~lvGpsGaGKST 19 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKST 19 (198)
T ss_dssp --CCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 46788999999999994
No 215
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=76.70 E-value=1.3 Score=36.14 Aligned_cols=18 Identities=11% Similarity=0.276 Sum_probs=15.0
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
+.|+-++++||+|+|||.
T Consensus 3 ~~g~~i~i~GpsGsGKST 20 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRH 20 (180)
T ss_dssp CCCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457778889999999994
No 216
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=76.69 E-value=4.6 Score=36.38 Aligned_cols=49 Identities=22% Similarity=0.255 Sum_probs=28.5
Q ss_pred CCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhc-----CCCcEEEEcCCCChhHHH
Q psy17644 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAAL-----SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 166 ~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~-----~g~d~i~~a~TGsGKT~a 220 (330)
-.+|++++=...+.+.|...-. .|+. .|.++ ..+.+++.||+|+|||..
T Consensus 8 ~~~~~di~G~~~~k~~l~~~v~---~p~~---~~~~~~~~~~~~~~iLL~GppGtGKT~l 61 (322)
T 1xwi_A 8 NVKWSDVAGLEGAKEALKEAVI---LPIK---FPHLFTGKRTPWRGILLFGPPGTGKSYL 61 (322)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHH---HHHH---CGGGSCTTCCCCSEEEEESSSSSCHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHH---HHHh---CHHHHhCCCCCCceEEEECCCCccHHHH
Confidence 3568888755565555543110 0111 12222 236799999999999943
No 217
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=76.69 E-value=3.8 Score=35.25 Aligned_cols=17 Identities=29% Similarity=0.429 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
.+.+++.|++|+|||..
T Consensus 45 ~~~vll~G~~GtGKT~l 61 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLL 61 (257)
T ss_dssp CCEEEEECCTTSCHHHH
T ss_pred CCeEEEECcCCCCHHHH
Confidence 35699999999999943
No 218
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=76.54 E-value=0.92 Score=40.56 Aligned_cols=53 Identities=17% Similarity=0.246 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHH--Hhhh-hhcCCCcEEEEcCCCChhHHH
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQA--QAVP-AALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~--~~i~-~~~~g~d~i~~a~TGsGKT~a 220 (330)
|-.+|++++-...+++.+...-. .|+.. .... .+..++.+++.|++|+|||..
T Consensus 10 ~~~~~~di~G~~~~~~~l~~~v~---~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~l 65 (301)
T 3cf0_A 10 PQVTWEDIGGLEDVKRELQELVQ---YPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 65 (301)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHH---HHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCceEEEECCCCcCHHHH
Confidence 34568887655555555543100 01100 0000 123567899999999999943
No 219
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=76.35 E-value=1.6 Score=40.32 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=17.1
Q ss_pred hhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 198 VPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 198 i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
+..++.|.+..+. |+||||||.+.
T Consensus 73 v~~~l~G~n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 73 VDDILNGYNGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp HHHHTTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCcceEEEECCCCCCcceEe
Confidence 4456788875443 99999999653
No 220
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=76.33 E-value=1.6 Score=40.33 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=17.8
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
++..++.|.+..+. |+||||||.+.
T Consensus 97 lv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 97 ILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHhCCCceEEEEeCCCCCCceeee
Confidence 44556788875444 99999999653
No 221
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=76.28 E-value=1.5 Score=40.25 Aligned_cols=24 Identities=33% Similarity=0.357 Sum_probs=17.3
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.+..+. ++||||||.+
T Consensus 75 lv~~~l~G~n~tifAYGqTGSGKTyT 100 (344)
T 4a14_A 75 LLEAFFEGFNATVFAYGQTGSGKTYT 100 (344)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHHhhcCeeEEEecccCCCceEe
Confidence 34456688875444 9999999965
No 222
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=76.06 E-value=1.6 Score=40.29 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=17.1
Q ss_pred hhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 198 VPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 198 i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
+..++.|.+..+. |+||||||.+.
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEe
Confidence 4455688775444 99999999653
No 223
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=75.96 E-value=38 Score=34.76 Aligned_cols=16 Identities=25% Similarity=0.435 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCChhHH
Q psy17644 204 GRDIIGVAKTGSGKTG 219 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~ 219 (330)
.++++++|++|+|||.
T Consensus 191 ~~~vlL~G~pG~GKT~ 206 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTA 206 (854)
T ss_dssp CCCCEEEECTTSCHHH
T ss_pred CCceEEEcCCCCCHHH
Confidence 4579999999999994
No 224
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=75.81 E-value=1.3 Score=40.70 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=16.9
Q ss_pred hhhhhcCCCcEEE--EcCCCChhHHH
Q psy17644 197 AVPAALSGRDIIG--VAKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~--~a~TGsGKT~a 220 (330)
++..++.|.++.+ -|+||||||.+
T Consensus 86 lv~~~l~G~N~tifAYGQTGSGKTyT 111 (344)
T 3dc4_A 86 LVDKLLEGFQCTALAYGQTGTGKSYS 111 (344)
T ss_dssp HHHHHHHTCCEEEEEESSTTSSHHHH
T ss_pred hhhHhhCCCceEEEEecCCCCCCCeE
Confidence 3445567877544 39999999965
No 225
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=75.77 E-value=2.1 Score=37.17 Aligned_cols=18 Identities=17% Similarity=0.318 Sum_probs=15.6
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
..+..+++.|++|+|||.
T Consensus 27 ~~~~~vll~G~~GtGKt~ 44 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKEL 44 (265)
T ss_dssp TSCSCEEEECCTTSCHHH
T ss_pred CCCCCEEEECCCCCcHHH
Confidence 356889999999999994
No 226
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=75.73 E-value=10 Score=34.09 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.3
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
+++.||+|+|||..
T Consensus 49 ~ll~Gp~G~GKTtl 62 (340)
T 1sxj_C 49 LLFYGPPGTGKTST 62 (340)
T ss_dssp EEEECSSSSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 89999999999943
No 227
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=75.69 E-value=1.8 Score=43.29 Aligned_cols=74 Identities=9% Similarity=0.154 Sum_probs=45.9
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHh--ccCCCceEEEEECC--------CchHHHHHHH---hC-CCeEEEEChHHHHHHH
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRF--GKGYNLSVVCCYGG--------GSKWDQSKAL---EL-GAEIVVGTPGRIIDMV 305 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l--~~~~~~~~~~~~gg--------~~~~~~~~~l---~~-~~dIiV~TP~~L~~~l 305 (330)
+.++||.++|+..+..+...+... ....++++..++|+ .+...+...+ +. ..+|||||- .
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~-----~- 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATT-----V- 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEEC-----S-
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEcc-----c-
Confidence 678999999999999999998864 22336777888887 6655544333 33 367888883 1
Q ss_pred HcCCCCCCCccEEE
Q psy17644 306 KMGATKLNRVTFLV 319 (330)
Q Consensus 306 ~~~~~~l~~i~~lV 319 (330)
-...+++..+.+||
T Consensus 474 ~~~GIDip~v~~VI 487 (699)
T 4gl2_A 474 AEEGLDIKECNIVI 487 (699)
T ss_dssp CCTTSCCCSCCCCE
T ss_pred cccCCccccCCEEE
Confidence 12244556666655
No 228
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=75.66 E-value=1.6 Score=39.82 Aligned_cols=25 Identities=28% Similarity=0.426 Sum_probs=18.2
Q ss_pred hhhhhcCCCcEEE--EcCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIG--VAKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~--~a~TGsGKT~a~ 221 (330)
++..++.|.+..+ -|+||||||.+.
T Consensus 72 lv~~~l~G~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 72 LVTSCIDGFNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHhCCCEEEEEeECCCCCCCcEEE
Confidence 4556678887544 499999999553
No 229
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=75.64 E-value=1.6 Score=40.45 Aligned_cols=24 Identities=38% Similarity=0.427 Sum_probs=17.8
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.++.+. ++||||||.+
T Consensus 95 lv~~~l~G~N~tIfAYGqTGSGKTyT 120 (358)
T 2nr8_A 95 VVSQALDGYNGTIMCYGQTGAGKTYT 120 (358)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCceEEEEECCCCCCCceE
Confidence 45566788875444 9999999965
No 230
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=75.58 E-value=1.6 Score=40.66 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=17.3
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.++.+. |+||||||.+
T Consensus 93 lv~~~l~G~n~tifAYGqTGSGKTyT 118 (372)
T 3b6u_A 93 LVDSVLQGFNGTIFAYGQTGTGKTYT 118 (372)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHH
T ss_pred HHHHHhCCCeeeEEeecCCCCCCCEe
Confidence 34456788875444 9999999965
No 231
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=75.44 E-value=6.1 Score=37.41 Aligned_cols=17 Identities=24% Similarity=0.345 Sum_probs=12.9
Q ss_pred CcEEEEcCCCChhHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~ 221 (330)
+-+++++++|+|||.+.
T Consensus 101 ~vI~ivG~~GvGKTT~a 117 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSV 117 (433)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45667799999999443
No 232
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=75.38 E-value=1.6 Score=40.78 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=16.7
Q ss_pred hhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 199 PAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 199 ~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
..++.|.+..+. |+||||||.+.
T Consensus 92 ~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 92 RHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp HHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHhhcCceeeEeeecCCCCCCCeEe
Confidence 445688875444 99999999653
No 233
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=75.31 E-value=1.7 Score=40.36 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=17.4
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.+..+. |+||||||.+
T Consensus 81 lv~~~l~G~N~tifAYGqTGSGKTyT 106 (366)
T 2zfi_A 81 MLQHAFEGYNVCIFAYGQTGAGKSYT 106 (366)
T ss_dssp HHHHHHTTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhcCCeeEEEEeCCCCCCCceE
Confidence 44556788875444 9999999955
No 234
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=75.21 E-value=11 Score=33.01 Aligned_cols=15 Identities=27% Similarity=0.474 Sum_probs=13.0
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.|++|+|||..
T Consensus 40 ~~ll~G~~G~GKt~l 54 (319)
T 2chq_A 40 HLLFSGPPGTGKTAT 54 (319)
T ss_dssp CEEEESSSSSSHHHH
T ss_pred eEEEECcCCcCHHHH
Confidence 589999999999943
No 235
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=75.18 E-value=17 Score=31.76 Aligned_cols=92 Identities=18% Similarity=0.152 Sum_probs=56.9
Q ss_pred CCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---HHHh
Q psy17644 212 KTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS---KALE 288 (330)
Q Consensus 212 ~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~l~ 288 (330)
...+||.. .+.-+|..+.. .+.++||.+.++..+..+...+.... ++.+..+.|+.+..... ..++
T Consensus 92 ~~~s~K~~-~L~~ll~~~~~-------~~~kvlIFs~~~~~~~~l~~~L~~~~---g~~~~~l~G~~~~~~R~~~i~~F~ 160 (271)
T 1z5z_A 92 VRRSGKMI-RTMEIIEEALD-------EGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQ 160 (271)
T ss_dssp STTCHHHH-HHHHHHHHHHH-------TTCCEEEEESCHHHHHHHHHHHHHHH---CSCCCEECTTSCHHHHHHHHHHHH
T ss_pred cccCHHHH-HHHHHHHHHHh-------CCCeEEEEeccHHHHHHHHHHHHHhc---CCcEEEEECCCCHHHHHHHHHHhc
Confidence 35678874 44555555543 36789999999999888888887631 45667788887754433 3333
Q ss_pred CC--Ce-EEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 289 LG--AE-IVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 289 ~~--~d-IiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
.+ +. +|++|-. -...+++..+.+||+
T Consensus 161 ~~~~~~v~L~st~~------~g~Glnl~~a~~VI~ 189 (271)
T 1z5z_A 161 NNPSVKFIVLSVKA------GGFGINLTSANRVIH 189 (271)
T ss_dssp HCTTCCEEEEECCT------TCCCCCCTTCSEEEE
T ss_pred CCCCCCEEEEehhh------hcCCcCcccCCEEEE
Confidence 33 45 5666621 123455666666654
No 236
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=75.16 E-value=6.1 Score=42.35 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=41.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcC----CCCCCCCCeEEEEcccHHHHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQK----ELEPGDGPMGLILAPTRELSQQIYNEAKRF 263 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~----~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l 263 (330)
.|.. ++.|.-|||||.+-.--++..++... ........++|+|+=|+.-|..+...++..
T Consensus 16 ~g~~-lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 16 QGER-LIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SSCE-EEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCCE-EEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 4544 89999999999766555666555321 000113457999999999999888887764
No 237
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=75.14 E-value=2.4 Score=40.82 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=31.9
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~ 260 (330)
+..|.=+++.|++|+||| +|++.++.++..+ .+.+|+|+.- -.-..|+...+
T Consensus 239 l~~G~l~li~G~pG~GKT-~lal~~a~~~a~~------~g~~vl~~s~-E~s~~~l~~r~ 290 (503)
T 1q57_A 239 ARGGEVIMVTSGSGMVMS-TFVRQQALQWGTA------MGKKVGLAML-EESVEETAEDL 290 (503)
T ss_dssp CCTTCEEEEEESSCHHHH-HHHHHHHHHHTTT------SCCCEEEEES-SSCHHHHHHHH
T ss_pred cCCCeEEEEeecCCCCch-HHHHHHHHHHHHh------cCCcEEEEec-cCCHHHHHHHH
Confidence 345667788899999999 4556665555432 2456777653 23344555544
No 238
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=75.09 E-value=1.6 Score=40.24 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=18.4
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
++..++.|.+..+. |+||||||.+.
T Consensus 84 lv~~~l~G~n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 84 ILQNAFDGYNACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp HHHHHHTTCCEEEEEEECTTSSHHHHH
T ss_pred HHHHHhCCceeEEEeeCCCCCCCceEE
Confidence 45566788875444 99999999653
No 239
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=75.08 E-value=3.6 Score=41.36 Aligned_cols=69 Identities=10% Similarity=0.042 Sum_probs=47.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCccE
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTF 317 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~ 317 (330)
.+.++||+|||+.-|..++..++.. ++++..++|. ........++. ..+|||||- .+. ..+++. +.+
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~----g~~v~~lHg~-eR~~v~~~F~~g~~~VLVaTd-----v~e-~GIDip-v~~ 476 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRA----GKRVIQLNRK-SYDTEYPKCKNGDWDFVITTD-----ISE-MGANFG-ASR 476 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECSS-SHHHHGGGGGTCCCSEEEECG-----GGG-TTCCCC-CSE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhC----CCeEEEeChH-HHHHHHHHHHCCCceEEEECc-----hhh-cceeeC-CcE
Confidence 3578999999999999999888775 5677777773 33322333333 478999993 333 344566 666
Q ss_pred EE
Q psy17644 318 LV 319 (330)
Q Consensus 318 lV 319 (330)
||
T Consensus 477 VI 478 (673)
T 2wv9_A 477 VI 478 (673)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 240
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=75.01 E-value=1.5 Score=40.54 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=17.5
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.++.+. |+||||||.+
T Consensus 80 lv~~~l~G~n~tifAYGqTGSGKTyT 105 (359)
T 1x88_A 80 ILDEVIMGYNCTIFAYGQTGTGKTFT 105 (359)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHH
T ss_pred hHHHHhCCCceEEEEeCCCCCCCceE
Confidence 45556788875444 9999999954
No 241
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=74.71 E-value=1.6 Score=41.20 Aligned_cols=25 Identities=40% Similarity=0.521 Sum_probs=18.7
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
++..++.|.++.+. |+||||||.+.
T Consensus 130 lv~~~l~G~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 130 LIQSALDGYNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHHHCCCceEEEEecCCCCCCeeEe
Confidence 56667788875444 99999999653
No 242
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=74.62 E-value=1.7 Score=40.01 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=17.7
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
++..++.|.+..+. |+||||||.+.
T Consensus 69 lv~~~l~G~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 69 IIDSAIQGYNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp HHHHHHTTCCEEEEEEESTTSSHHHHH
T ss_pred HHHHHHcCCccceeeecCCCCCCCeEE
Confidence 34556788875443 99999999654
No 243
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=74.53 E-value=1.9 Score=39.72 Aligned_cols=16 Identities=31% Similarity=0.408 Sum_probs=13.3
Q ss_pred CCCcEEEEcCCCChhH
Q psy17644 203 SGRDIIGVAKTGSGKT 218 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT 218 (330)
.+.-++++||||||||
T Consensus 122 ~~g~i~I~GptGSGKT 137 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKS 137 (356)
T ss_dssp SSEEEEEECSTTSCHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4456788899999998
No 244
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=74.52 E-value=3.9 Score=38.71 Aligned_cols=54 Identities=15% Similarity=0.050 Sum_probs=38.4
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC-CCeEEEECh
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL-GAEIVVGTP 298 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~TP 298 (330)
+.++||.|||+.-|..++..+++. +..+..++|... ......++. ..+|||||-
T Consensus 188 ~~~~lVF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~-~~~~~~f~~g~~~vLVaT~ 242 (451)
T 2jlq_A 188 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRKTF-DTEYPKTKLTDWDFVVTTD 242 (451)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHTT----TCCEEEECTTTH-HHHGGGGGSSCCSEEEECG
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHc----CCeEEECCHHHH-HHHHHhhccCCceEEEECC
Confidence 458999999999999999988765 566666666443 222333333 479999993
No 245
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=74.52 E-value=1.8 Score=40.82 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=17.2
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
++..++.|.++.+. |+||||||.+.
T Consensus 146 lV~~~l~G~N~tifAYGQTGSGKTyTM 172 (410)
T 1v8k_A 146 LVQTIFEGGKATCFAYGQTGSGKTHTM 172 (410)
T ss_dssp HHHHHHTTCEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcCCceeEEeecCCCCCCCeEe
Confidence 34455688774443 99999999653
No 246
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=74.52 E-value=4.2 Score=37.04 Aligned_cols=59 Identities=15% Similarity=0.098 Sum_probs=31.2
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHH-HHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL-SQQIYNEAKRF 263 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~L-a~Qi~~~~~~l 263 (330)
.|.-+++.|++|+|||. +++.++..+.... ...+.+.+++|+.-...+ ..++...+.++
T Consensus 121 ~G~i~~I~G~~GsGKTt-la~~la~~~~~~~-~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~ 180 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQ-LSHTLCVTAQLPG-AGGYPGGKIIFIDTENTFRPDRLRDIADRF 180 (343)
T ss_dssp SSEEEEEECCTTCTHHH-HHHHHHHHTTSCB-TTTBCCCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHH-HHHHHHHHHhccc-ccCCCCCeEEEEECCCCCCHHHHHHHHHHc
Confidence 45667888999999994 4444443322111 011135577777654321 33444444443
No 247
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=74.09 E-value=2.8 Score=35.42 Aligned_cols=30 Identities=33% Similarity=0.269 Sum_probs=23.9
Q ss_pred CHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 191 TPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 191 t~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
+.-|..++..+..|.-+.+.+++|+|||..
T Consensus 9 ~~g~~~~l~~i~~Ge~~~liG~nGsGKSTL 38 (208)
T 3b85_A 9 TLGQKHYVDAIDTNTIVFGLGPAGSGKTYL 38 (208)
T ss_dssp SHHHHHHHHHHHHCSEEEEECCTTSSTTHH
T ss_pred CHhHHHHHHhccCCCEEEEECCCCCCHHHH
Confidence 445667777778888888999999999843
No 248
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=74.09 E-value=1.5 Score=40.74 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=18.3
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
++..++.|.++.+. |+||||||.+.
T Consensus 71 lv~~~l~G~n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 71 LVQSAVDGYNVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp HHHHHHTTCEEEEEEEECTTSSHHHHH
T ss_pred hhHhhhcCCceEEEEECCCCCCCeEee
Confidence 45566788875444 99999999653
No 249
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=74.08 E-value=4.5 Score=40.24 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=42.3
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEEC--------CCchHHHH---HHHhC--CCeEEEEChHHHHHHH
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYG--------GGSKWDQS---KALEL--GAEIVVGTPGRIIDMV 305 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~g--------g~~~~~~~---~~l~~--~~dIiV~TP~~L~~~l 305 (330)
.+.++||.++|+..|..++..+...+...++++..++| +.+..++. ..++. ...|||||- .
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~-----v- 470 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATS-----V- 470 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CCSCSEEEE-----S-
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEec-----h-
Confidence 45789999999999999999998864333366666654 55443333 22332 468999993 1
Q ss_pred HcCCCCCCCccEEEe
Q psy17644 306 KMGATKLNRVTFLVL 320 (330)
Q Consensus 306 ~~~~~~l~~i~~lVv 320 (330)
-...+++..+.+||.
T Consensus 471 ~~~GiDip~v~~VI~ 485 (696)
T 2ykg_A 471 ADEGIDIAQCNLVIL 485 (696)
T ss_dssp SCCC---CCCSEEEE
T ss_pred hhcCCcCccCCEEEE
Confidence 123556778888875
No 250
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=74.04 E-value=2.5 Score=36.40 Aligned_cols=51 Identities=20% Similarity=0.236 Sum_probs=27.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCC--CCCCCHHHHHhhhhh--cCCCcEEEEcCCCChhHH
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCE--YTSPTPIQAQAVPAA--LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~--~~~pt~iQ~~~i~~~--~~g~d~i~~a~TGsGKT~ 219 (330)
.|-.+|+++.-.......+.... +..+ .++..+ .-.+.+++.+++|+|||.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~~~~~~~~~~~g~ll~G~~G~GKTt 64 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTH 64 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCSEEEEECCTTSSHHH
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCCCCHHH
Confidence 34556888766665555544321 1111 111111 112348999999999994
No 251
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=73.99 E-value=2 Score=39.94 Aligned_cols=24 Identities=42% Similarity=0.455 Sum_probs=18.3
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.++.+. ++||||||.+
T Consensus 107 lv~~~l~G~N~tifAYGqTGSGKTyT 132 (376)
T 2rep_A 107 LVQSALDGYPVCIFAYGQTGSGKTFT 132 (376)
T ss_dssp HHHGGGGTCCEEEEEECSTTSSHHHH
T ss_pred HHHHhcCCCceEEEEeCCCCCCCceE
Confidence 56677888875444 9999999954
No 252
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=73.83 E-value=4.7 Score=44.79 Aligned_cols=51 Identities=20% Similarity=0.289 Sum_probs=36.1
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|+-+.+.+|.|||||. .++|++....+ .|..++++.+-.+|.... +++++
T Consensus 1430 rg~~iei~g~~~sGktt-l~~~~~a~~~~-------~g~~~~~i~~e~~~~~~~---~~~~G 1480 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTT-LTLQVIAAAQR-------EGKTCAFIDAEHALDPIY---ARKLG 1480 (1706)
T ss_dssp TTSEEEEECSTTSSHHH-HHHHHHHHHHH-------TTCCEEEECTTSCCCHHH---HHHTT
T ss_pred CCCEEEEEcCCCCCHHH-HHHHHHHHHHh-------cCCeEEEEecCCCCCHHH---HHHcC
Confidence 45778888999999994 45566655444 477889998877775543 55654
No 253
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=73.46 E-value=3 Score=40.32 Aligned_cols=25 Identities=28% Similarity=0.313 Sum_probs=20.4
Q ss_pred HHhhhhhcCCCcEEEEcCCCChhHH
Q psy17644 195 AQAVPAALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 195 ~~~i~~~~~g~d~i~~a~TGsGKT~ 219 (330)
..++-.+..+.++++.|++|+|||.
T Consensus 32 ~~l~~al~~~~~VLL~GpPGtGKT~ 56 (500)
T 3nbx_X 32 RLCLLAALSGESVFLLGPPGIAKSL 56 (500)
T ss_dssp HHHHHHHHHTCEEEEECCSSSSHHH
T ss_pred HHHHHHHhcCCeeEeecCchHHHHH
Confidence 4455566788999999999999994
No 254
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=73.46 E-value=1.8 Score=40.42 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=17.1
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.+..+. |+||||||.+
T Consensus 126 lv~~~l~G~N~tifAYGQTGSGKTyT 151 (387)
T 2heh_A 126 LVQTIFEGGKATCFAYGQTGSGKTHT 151 (387)
T ss_dssp HHHHHHTTCEEEEEEESCTTSSHHHH
T ss_pred HHHHHhcCCceEEEEecCCCCCCCeE
Confidence 34456688774443 9999999965
No 255
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=73.43 E-value=1.6 Score=40.55 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=16.9
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..++.|.+..+. |+||||||.+
T Consensus 92 lv~~~l~G~n~tifAYGqTGSGKTyT 117 (373)
T 2wbe_C 92 LIEEVLNGYNCTVFAYGQTGTGKTHT 117 (373)
T ss_dssp HHHHHHHTCCEEEEEECSTTSSHHHH
T ss_pred HHHHHhCCceEEEEeecCCCCCccee
Confidence 34456678775444 9999999954
No 256
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=73.12 E-value=20 Score=34.63 Aligned_cols=16 Identities=44% Similarity=0.441 Sum_probs=12.7
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
+.+++++++|+|||..
T Consensus 102 ~vI~ivG~~GvGKTTl 117 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTT 117 (504)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577789999999944
No 257
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=73.03 E-value=4.5 Score=36.27 Aligned_cols=50 Identities=20% Similarity=0.252 Sum_probs=29.9
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhc-----CCCcEEEEcCCCChhHHH
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAAL-----SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~-----~g~d~i~~a~TGsGKT~a 220 (330)
|-.+|.++.-...+++.+...-. .|. ..|.++ ..+.+++.||+|+|||..
T Consensus 13 ~~~~~~di~G~~~~~~~l~~~i~---~~~---~~~~~~~~~~~~~~~vLl~GppGtGKT~l 67 (322)
T 3eie_A 13 PNVKWEDVAGLEGAKEALKEAVI---LPV---KFPHLFKGNRKPTSGILLYGPPGTGKSYL 67 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTH---HHH---HCGGGCCTTCCCCCEEEEECSSSSCHHHH
T ss_pred CCCCHHHhcChHHHHHHHHHHHH---HHH---hCHHHHhcCCCCCCeEEEECCCCCcHHHH
Confidence 34568888766666666654211 011 112222 236799999999999943
No 258
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=72.85 E-value=7.2 Score=34.10 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.3
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++.+++.|++|+|||..
T Consensus 49 ~~~~vll~G~~GtGKT~l 66 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEI 66 (310)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 467899999999999943
No 259
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=72.23 E-value=2.1 Score=35.64 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=16.4
Q ss_pred hhcCCCcEEEEcCCCChhHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~ 219 (330)
.+..|+-++++|++|||||.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsT 27 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGT 27 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHH
T ss_pred ccccCCEEEEECCCCCCHHH
Confidence 34578889999999999984
No 260
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=72.07 E-value=2.2 Score=40.63 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=17.9
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGAF 221 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a~ 221 (330)
++..++.|.+..+. |+||||||.+.
T Consensus 128 lv~~~l~GyN~tIfAYGQTGSGKTyTM 154 (443)
T 2owm_A 128 FLDHNFEGYHTCIFAYGQTGSGKSYTM 154 (443)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred HHHHhhcCCceEEEEeCCCCCCCCEEe
Confidence 44556788875444 99999999654
No 261
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.98 E-value=1.7 Score=39.18 Aligned_cols=20 Identities=25% Similarity=0.192 Sum_probs=16.7
Q ss_pred hhcCCCcEEEEcCCCChhHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~ 219 (330)
.+..++++++.|++|+|||.
T Consensus 42 ~l~~~~~vll~G~pGtGKT~ 61 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTL 61 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHH
Confidence 34457899999999999994
No 262
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=71.53 E-value=2.1 Score=35.50 Aligned_cols=18 Identities=28% Similarity=0.213 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++.++++|++|||||..
T Consensus 24 ~~~~i~l~G~~GsGKsTl 41 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTL 41 (199)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCCEEEEEcCCCCCHHHH
Confidence 567889999999999944
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=71.32 E-value=2.2 Score=34.31 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++-++++|++|||||..
T Consensus 3 ~~~i~l~G~~GsGKST~ 19 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 45688899999999943
No 264
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=71.32 E-value=7 Score=38.78 Aligned_cols=67 Identities=12% Similarity=0.069 Sum_probs=45.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh-CCCeEEEEChHHHHHHHHcCCCCCCCccEE
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE-LGAEIVVGTPGRIIDMVKMGATKLNRVTFL 318 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiV~TP~~L~~~l~~~~~~l~~i~~l 318 (330)
+.++||.|+|+.-|..++..+++. +.++..++|. ........++ ....|||||. .+.+ .+++. +.+|
T Consensus 355 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~v~~lhg~-~R~~~l~~F~~g~~~VLVaTd-----v~~r-GiDi~-v~~V 422 (618)
T 2whx_A 355 QGKTVWFVPSIKAGNDIANCLRKS----GKRVIQLSRK-TFDTEYPKTKLTDWDFVVTTD-----ISEM-GANFR-AGRV 422 (618)
T ss_dssp CSCEEEECSSHHHHHHHHHHHHHT----TCCEEEECTT-THHHHTTHHHHSCCSEEEECG-----GGGT-TCCCC-CSEE
T ss_pred CCCEEEEECChhHHHHHHHHHHHc----CCcEEEEChH-HHHHHHHhhcCCCcEEEEECc-----HHHc-CcccC-ceEE
Confidence 468999999999999999998876 5677777764 3222223333 3578999994 3333 34453 6655
No 265
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=71.03 E-value=6.4 Score=35.83 Aligned_cols=18 Identities=39% Similarity=0.458 Sum_probs=15.5
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
..+.+++.||+|+|||..
T Consensus 50 ~~~~vll~GppGtGKT~l 67 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLL 67 (363)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 457899999999999954
No 266
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=70.62 E-value=2.3 Score=35.06 Aligned_cols=18 Identities=28% Similarity=0.261 Sum_probs=15.0
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
..|+-++++|++|||||.
T Consensus 4 ~~g~~i~l~G~~GsGKST 21 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGT 21 (207)
T ss_dssp CCCCEEEEECSTTSCHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 457778889999999984
No 267
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=70.56 E-value=2.6 Score=38.80 Aligned_cols=19 Identities=42% Similarity=0.449 Sum_probs=16.5
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+..|..++++|+||||||.
T Consensus 172 i~~G~~i~ivG~sGsGKST 190 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTT 190 (361)
T ss_dssp HHTTCCEEEEESSSSCHHH
T ss_pred HhcCCEEEEECCCCCCHHH
Confidence 4478999999999999993
No 268
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=70.55 E-value=5.1 Score=35.98 Aligned_cols=27 Identities=30% Similarity=0.367 Sum_probs=17.5
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
.|.-+.+++++|+|||.. +..|..++.
T Consensus 101 ~g~vi~lvG~nGsGKTTl--l~~Lagll~ 127 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTT--IAKLGRYYQ 127 (304)
T ss_dssp SSSEEEEECSTTSSHHHH--HHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHH--HHHHHHHHH
Confidence 356677789999999943 233444443
No 269
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.50 E-value=2.6 Score=35.95 Aligned_cols=75 Identities=15% Similarity=0.064 Sum_probs=37.5
Q ss_pred hhhccCHHHHHHHHHHcCcEeeCCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHhhhhhcCC----CcEEEEcC
Q psy17644 137 DIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG----RDIIGVAK 212 (330)
Q Consensus 137 ~~~~~~~~~~~~~r~~~~i~~~g~~~p~p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~~i~~~~~g----~d~i~~a~ 212 (330)
....|+-.+|-..|...- . +. +=-..|.+-|+-.++. +... ..++..++.+ +.+++.+|
T Consensus 4 ~~~~m~~~~~i~~~~~~~-~--~~------------~~w~~I~~~l~yq~~~-~~~f-~~~l~~~~~~iPkkn~ili~GP 66 (212)
T 1tue_A 4 FGSGSNMSQWIRFRCSKI-D--EG------------GDWRPIVQFLRYQQIE-FITF-LGALKSFLKGTPKKNCLVFCGP 66 (212)
T ss_dssp --CCSCHHHHHHHHHHTS-C--SC------------CCSHHHHHHHHHTTCC-HHHH-HHHHHHHHHTCTTCSEEEEESC
T ss_pred HHHhcCHHHHHHHHHHHc-c--CC------------CCHHHHHHHHHHcCcC-HHHH-HHHHHHHHhcCCcccEEEEECC
Confidence 455677777766554431 1 10 1123455555544432 2222 2223333333 34888899
Q ss_pred CCChhHHHHHHHHHHHH
Q psy17644 213 TGSGKTGAFIWPMLVHI 229 (330)
Q Consensus 213 TGsGKT~a~llp~l~~i 229 (330)
.|+|||. +++.+++.+
T Consensus 67 PGtGKTt-~a~ala~~l 82 (212)
T 1tue_A 67 ANTGKSY-FGMSFIHFI 82 (212)
T ss_dssp GGGCHHH-HHHHHHHHH
T ss_pred CCCCHHH-HHHHHHHHh
Confidence 9999994 334455554
No 270
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=70.41 E-value=13 Score=37.23 Aligned_cols=75 Identities=13% Similarity=0.059 Sum_probs=49.8
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccC--------------------------CCceEEEEECCCchHHHHHHH---hC-
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKG--------------------------YNLSVVCCYGGGSKWDQSKAL---EL- 289 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~--------------------------~~~~~~~~~gg~~~~~~~~~l---~~- 289 (330)
+.++||.+|||.-|..++..+...... .+..+..++||.+...+.... +.
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g 321 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRG 321 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTT
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCC
Confidence 568999999999999999888764221 012356788888876654333 22
Q ss_pred CCeEEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 290 GAEIVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 290 ~~dIiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
...|||||. . -....++..+.+||-
T Consensus 322 ~~~vlvaT~-----~-l~~Gidip~~~~VI~ 346 (702)
T 2p6r_A 322 NIKVVVATP-----T-LAAGVNLPARRVIVR 346 (702)
T ss_dssp SCCEEEECS-----T-TTSSSCCCBSEEEEC
T ss_pred CCeEEEECc-----H-HhccCCCCceEEEEc
Confidence 468999994 1 223556777776553
No 271
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=70.32 E-value=5.8 Score=32.39 Aligned_cols=13 Identities=38% Similarity=0.179 Sum_probs=10.8
Q ss_pred EEEEcCCCChhHH
Q psy17644 207 IIGVAKTGSGKTG 219 (330)
Q Consensus 207 ~i~~a~TGsGKT~ 219 (330)
+.+.+++|||||.
T Consensus 7 i~i~G~sGsGKTT 19 (169)
T 1xjc_A 7 WQVVGYKHSGKTT 19 (169)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 5677999999994
No 272
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=70.16 E-value=2.7 Score=38.88 Aligned_cols=19 Identities=32% Similarity=0.239 Sum_probs=15.4
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+..|.-++++|+||||||.
T Consensus 133 ~~~g~~i~ivG~~GsGKTT 151 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKST 151 (372)
T ss_dssp TSSSEEEEEECSSSSSHHH
T ss_pred hcCCCEEEEECCCCCCHHH
Confidence 3456778889999999993
No 273
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=70.15 E-value=1.1 Score=39.54 Aligned_cols=52 Identities=19% Similarity=0.298 Sum_probs=23.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHH-Hhhhhh--cCCCcEEEEcCCCChhHH
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQA-QAVPAA--LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~-~~i~~~--~~g~d~i~~a~TGsGKT~ 219 (330)
|-.+|.+++-...+.+.|...-. .|+.. .++..+ .-.+.+++.||+|+|||.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~---~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTt 59 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAIL---APVRNPDQFKALGLVTPAGVLLAGPPGCGKTL 59 (274)
T ss_dssp -------CCHHHHHHHHHHHHHT---HHHHSHHHHHHTTCCCCSEEEEESSTTSCHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHH---HHhhCHHHHHHcCCCCCCeEEEECCCCCcHHH
Confidence 34568888765666665543211 11111 111111 112348999999999994
No 274
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=70.07 E-value=2.4 Score=34.95 Aligned_cols=17 Identities=35% Similarity=0.395 Sum_probs=14.3
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.=+.++||+|||||.
T Consensus 6 ~g~ii~l~Gp~GsGKST 22 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTS 22 (205)
T ss_dssp CCCEEEEECCTTSCHHH
T ss_pred CCcEEEEECcCCCCHHH
Confidence 56777888999999994
No 275
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=70.05 E-value=4.7 Score=34.10 Aligned_cols=22 Identities=27% Similarity=0.314 Sum_probs=17.2
Q ss_pred hhcCCCcEEEEcCCCChhHHHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~a~ 221 (330)
-+-.|.-+.+.+|+|+|||...
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFA 47 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHH
Confidence 3456788888999999999443
No 276
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=69.76 E-value=2.5 Score=35.59 Aligned_cols=18 Identities=11% Similarity=0.403 Sum_probs=15.7
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
+.|+-++++||+|+|||.
T Consensus 17 ~~g~~ivl~GPSGaGKsT 34 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSH 34 (197)
T ss_dssp CSCCEEEEECCTTSSHHH
T ss_pred CCCCEEEEECcCCCCHHH
Confidence 467888999999999994
No 277
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=69.56 E-value=1.9 Score=35.16 Aligned_cols=18 Identities=33% Similarity=0.518 Sum_probs=14.9
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
..|+-++++|++|||||.
T Consensus 7 ~~g~~i~l~G~~GsGKST 24 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKST 24 (191)
T ss_dssp CTTEEEEEEECTTSCHHH
T ss_pred CCCeEEEEECCCCCCHHH
Confidence 356778889999999994
No 278
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=69.35 E-value=8.5 Score=33.93 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=28.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHh-hhhhcCCC-----cEEEEcCCCChhHHHHH
Q psy17644 176 EVLMKALRKCEYTSPTPIQAQA-VPAALSGR-----DIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 176 ~~l~~~l~~~~~~~pt~iQ~~~-i~~~~~g~-----d~i~~a~TGsGKT~a~l 222 (330)
..+.+-|+..|+. |++... +-.++.++ .+++.||.|+|||+.+.
T Consensus 73 n~i~~~l~~qg~~---~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 73 NRIYKILELNGYD---PQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CHHHHHHHHTTCC---HHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHcCCC---HHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHH
Confidence 3677778777765 665333 33444443 48888999999995544
No 279
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.94 E-value=1.7 Score=41.31 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=29.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCC---CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCE---YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~---~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
.|-.+|++.+=-....+.|+..- +..|.-++...+ .-.+.+++.||+|+|||+.
T Consensus 175 ~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~---~~prGvLL~GPPGtGKTll 231 (437)
T 4b4t_L 175 QGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGI---KPPKGVLLYGPPGTGKTLL 231 (437)
T ss_dssp SCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTSSHHHH
T ss_pred CCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCeEEEECCCCCcHHHH
Confidence 34567998874445444443310 111111221111 1347899999999999954
No 280
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=68.94 E-value=16 Score=33.23 Aligned_cols=18 Identities=28% Similarity=0.359 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
..+.+++.|++|+|||..
T Consensus 116 ~~~~vLl~GppGtGKT~l 133 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLI 133 (357)
T ss_dssp CCSEEEEESSTTSSHHHH
T ss_pred CCceEEEECCCCCCHHHH
Confidence 457899999999999944
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=68.90 E-value=2.5 Score=34.24 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++.++++|++|||||..
T Consensus 5 ~~~i~l~G~~GsGKst~ 21 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSV 21 (185)
T ss_dssp CCEEEEECSTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 56788999999999944
No 282
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=68.73 E-value=3.3 Score=34.61 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|+=++++||+|+|||..
T Consensus 7 ~g~~i~l~GpsGsGKsTl 24 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTV 24 (208)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECcCCCCHHHH
Confidence 466688889999999943
No 283
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.68 E-value=2.5 Score=39.68 Aligned_cols=53 Identities=19% Similarity=0.269 Sum_probs=29.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC---CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCE---YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~---~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
|-.+|++.+=-....+.|+..- +..|.-++...+ ...+.+++.||+|+|||+.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi---~~prGvLL~GPPGTGKTll 198 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGI---AQPKGVILYGPPGTGKTLL 198 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTC---CCCCCEEEESCSSSSHHHH
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCCceEEeCCCCCCHHHH
Confidence 4567998874444444443321 111222222211 1347899999999999954
No 284
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.63 E-value=3 Score=39.95 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=31.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCC---CCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCE---YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~---~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
.|-.+|++.+=-..+.+.|+..- +..|--++... +...+.+|+.||+|+|||+.
T Consensus 203 ~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~G---i~pprGILLyGPPGTGKTlL 259 (467)
T 4b4t_H 203 KPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLG---IDPPKGILLYGPPGTGKTLC 259 (467)
T ss_dssp SCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHT---CCCCSEEEECSCTTSSHHHH
T ss_pred CCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCC---CCCCCceEeeCCCCCcHHHH
Confidence 35567999876666666654421 11111112111 12357899999999999943
No 285
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=68.54 E-value=2.9 Score=38.34 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=13.4
Q ss_pred CcEEEEcCCCChhHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~ 221 (330)
+-++++||||+|||...
T Consensus 41 ~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLS 57 (339)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45778899999999443
No 286
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=68.50 E-value=3.5 Score=36.04 Aligned_cols=50 Identities=20% Similarity=0.256 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHCC--CCCCCHHHHHhhhhh--cCCCcEEEEcCCCChhHH
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCE--YTSPTPIQAQAVPAA--LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~--~~~pt~iQ~~~i~~~--~~g~d~i~~a~TGsGKT~ 219 (330)
|-.+|+++.-...+...+.... +..+ .++..+ .-.+.+++.+++|+|||.
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~-----~~l~~~~~~~~~gvll~Gp~GtGKTt 88 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNP-----SRFHEMGARIPKGVLLVGPPGVGKTH 88 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCH-----HHHHHTTCCCCCEEEEECCTTSSHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCH-----HHHHHcCCCCCCeEEEECCCcChHHH
Confidence 4456888766666655554321 1111 111111 112348999999999994
No 287
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=68.39 E-value=2.7 Score=35.00 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=13.3
Q ss_pred CcEEEEcCCCChhHH
Q psy17644 205 RDIIGVAKTGSGKTG 219 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~ 219 (330)
|-++++||+|+|||.
T Consensus 2 RpIVi~GPSG~GK~T 16 (186)
T 1ex7_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEECCTTSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 568999999999984
No 288
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=68.35 E-value=7.3 Score=34.16 Aligned_cols=53 Identities=15% Similarity=0.130 Sum_probs=35.1
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhc
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~ 264 (330)
.|..+++.+.+|+||| ++.+.++..-+. +|-+++|++- .+-..++...++.++
T Consensus 20 ~gs~~li~g~p~~~~~-~l~~qfl~~g~~-------~Ge~~~~~~~-~e~~~~l~~~~~~~G 72 (260)
T 3bs4_A 20 HSLILIHEEDASSRGK-DILFYILSRKLK-------SDNLVGMFSI-SYPLQLIIRILSRFG 72 (260)
T ss_dssp TCEEEEEECSGGGCHH-HHHHHHHHHHHH-------TTCEEEEEEC-SSCHHHHHHHHHHTT
T ss_pred CCcEEEEEeCCCccHH-HHHHHHHHHHHH-------CCCcEEEEEE-eCCHHHHHHHHHHcC
Confidence 5667888878888888 666666665554 3566777654 455566677776664
No 289
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.34 E-value=3 Score=33.32 Aligned_cols=16 Identities=38% Similarity=0.563 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCChhHH
Q psy17644 204 GRDIIGVAKTGSGKTG 219 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~ 219 (330)
++-++++|++|||||.
T Consensus 4 ~~~i~l~G~~GsGKST 19 (173)
T 1kag_A 4 KRNIFLVGPMGAGKST 19 (173)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 5678899999999994
No 290
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=68.19 E-value=7.2 Score=36.93 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=15.7
Q ss_pred CCCcEEEEcCCCChhHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~ 221 (330)
.++.+++.||+|+|||...
T Consensus 62 ~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCcCCHHHHH
Confidence 4578999999999999443
No 291
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=68.18 E-value=3.6 Score=36.79 Aligned_cols=19 Identities=21% Similarity=0.261 Sum_probs=15.9
Q ss_pred cCCCcEEEEcCCCChhHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a 220 (330)
.....+++.|++|+|||..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~l 41 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELV 41 (304)
T ss_dssp STTSCEEEESCTTSCHHHH
T ss_pred CCCCcEEEECCCCchHHHH
Confidence 3567899999999999943
No 292
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=67.90 E-value=2.5 Score=38.30 Aligned_cols=14 Identities=43% Similarity=0.451 Sum_probs=11.7
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
++++||||||||..
T Consensus 13 i~i~GptgsGKt~l 26 (316)
T 3foz_A 13 IFLMGPTASGKTAL 26 (316)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 67789999999944
No 293
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=67.84 E-value=1.1 Score=42.67 Aligned_cols=70 Identities=13% Similarity=0.146 Sum_probs=0.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---hC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---EL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+.++||.|+|+.-|..++..+... +..+..++|+.....+...+ +. ..+|||||- ++. ..+++..+
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~-----~~~-~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTN-----VCA-RGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----CccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEcc-----ccc-cCCccccC
Confidence 468999999999999988888765 56677788877654443322 22 368999993 222 23445555
Q ss_pred cEEE
Q psy17644 316 TFLV 319 (330)
Q Consensus 316 ~~lV 319 (330)
.+||
T Consensus 403 ~~VI 406 (479)
T 3fmp_B 403 SVVI 406 (479)
T ss_dssp ----
T ss_pred CEEE
Confidence 5555
No 294
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=67.77 E-value=2.4 Score=38.59 Aligned_cols=16 Identities=31% Similarity=0.171 Sum_probs=12.5
Q ss_pred cEEEEcCCCChhHHHH
Q psy17644 206 DIIGVAKTGSGKTGAF 221 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~ 221 (330)
=++++||||+|||...
T Consensus 5 ~i~i~GptgsGKt~la 20 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCcCCHHHHH
Confidence 3677899999999443
No 295
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=67.51 E-value=12 Score=38.46 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=38.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC--CCeEEEEC
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL--GAEIVVGT 297 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~--~~dIiV~T 297 (330)
+..+||.|.|++-+..+...+.+. |+.+.++.|+....+....... ...|+|||
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~----gi~~~vLhg~~~~rEr~ii~~ag~~g~VlIAT 487 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNK----GIPHQVLNAKNHEREAQIIEEAGQKGAVTIAT 487 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTT----TCCCEEECSSCHHHHHHHHTTTTSTTCEEEEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC----CCCEEEeeCCccHHHHHHHHHcCCCCeEEEeC
Confidence 456899999999999988877764 6777788887654443222211 25799999
No 296
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=67.15 E-value=2.6 Score=37.13 Aligned_cols=53 Identities=15% Similarity=0.177 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHH-Hhhh-hhcCCCcEEEEcCCCChhHHH
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQA-QAVP-AALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~-~~i~-~~~~g~d~i~~a~TGsGKT~a 220 (330)
+-.+|.++.=....++.+...-. .|... ..+. ....++.+++.|++|+|||..
T Consensus 16 ~~~~~~~i~G~~~~~~~l~~~i~---~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~l 70 (297)
T 3b9p_A 16 AKVEWTDIAGQDVAKQALQEMVI---LPSVRPELFTGLRAPAKGLLLFGPPGNGKTLL 70 (297)
T ss_dssp SCCCGGGSCCCHHHHHHHHHHTH---HHHHCGGGSCGGGCCCSEEEEESSSSSCHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHH---hhhhCHHHHhcCCCCCCeEEEECcCCCCHHHH
Confidence 33467777655666665543210 00000 0000 112357899999999999943
No 297
>3nzo_A UDP-N-acetylglucosamine 4,6-dehydratase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, NAD; HET: MSE NAD; 2.10A {Vibrio fischeri} PDB: 3pvz_A*
Probab=67.09 E-value=46 Score=30.55 Aligned_cols=88 Identities=9% Similarity=0.039 Sum_probs=53.7
Q ss_pred HhhhhhcCCCcEEEEcCCCC-hhHHHHHHHHHHHHHhcCCCCCCCCC-eEEEEcccHHHHHHHHHHHHHhccCCCceEEE
Q psy17644 196 QAVPAALSGRDIIGVAKTGS-GKTGAFIWPMLVHIMDQKELEPGDGP-MGLILAPTRELSQQIYNEAKRFGKGYNLSVVC 273 (330)
Q Consensus 196 ~~i~~~~~g~d~i~~a~TGs-GKT~a~llp~l~~i~~~~~~~~~~~~-~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~ 273 (330)
..+...+.++.+++.|.||. |..++ .+++. .|+ .++++.-+..-..++...+.......+..+..
T Consensus 27 ~~~~~~~~~k~vLVTGatG~IG~~l~------~~L~~-------~g~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~v~~ 93 (399)
T 3nzo_A 27 KELQSVVSQSRFLVLGGAGSIGQAVT------KEIFK-------RNPQKLHVVDISENNMVELVRDIRSSFGYINGDFQT 93 (399)
T ss_dssp HHHHHHHHTCEEEEETTTSHHHHHHH------HHHHT-------TCCSEEEEECSCHHHHHHHHHHHHHHTCCCSSEEEE
T ss_pred HHHHHHhCCCEEEEEcCChHHHHHHH------HHHHH-------CCCCEEEEEECCcchHHHHHHHHHHhcCCCCCcEEE
Confidence 34555678899999998885 65533 33333 354 66666666666666666666554433456666
Q ss_pred EECCCchHHHHHHHh--CCCeEEEE
Q psy17644 274 CYGGGSKWDQSKALE--LGAEIVVG 296 (330)
Q Consensus 274 ~~gg~~~~~~~~~l~--~~~dIiV~ 296 (330)
+.+..........+. .++++||-
T Consensus 94 ~~~Dl~d~~~~~~~~~~~~~D~Vih 118 (399)
T 3nzo_A 94 FALDIGSIEYDAFIKADGQYDYVLN 118 (399)
T ss_dssp ECCCTTSHHHHHHHHHCCCCSEEEE
T ss_pred EEEeCCCHHHHHHHHHhCCCCEEEE
Confidence 766665544333332 46898883
No 298
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=66.96 E-value=2.6 Score=35.75 Aligned_cols=18 Identities=22% Similarity=0.471 Sum_probs=15.4
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
..|+-+++.++||+|||.
T Consensus 32 ~~g~~ilI~GpsGsGKSt 49 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSE 49 (205)
T ss_dssp ETTEEEEEECCCTTTTHH
T ss_pred ECCEEEEEECCCCCCHHH
Confidence 367889999999999983
No 299
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=66.91 E-value=14 Score=35.27 Aligned_cols=76 Identities=14% Similarity=0.119 Sum_probs=35.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEE--------EECCCchHHHH---HHHhC--CCeEEEEChHHHHHHH
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVC--------CYGGGSKWDQS---KALEL--GAEIVVGTPGRIIDMV 305 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~--------~~gg~~~~~~~---~~l~~--~~dIiV~TP~~L~~~l 305 (330)
.+.++||.|+++..+..+...+.......++++.. +.||.+..++. ..++. ...|||||- .+
T Consensus 389 ~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~-----~~ 463 (556)
T 4a2p_A 389 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 463 (556)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC-------
T ss_pred CCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcC-----ch
Confidence 46799999999999999999887652222233333 33444433332 33333 368999994 22
Q ss_pred HcCCCCCCCccEEEe
Q psy17644 306 KMGATKLNRVTFLVL 320 (330)
Q Consensus 306 ~~~~~~l~~i~~lVv 320 (330)
. ..+++..+.+||.
T Consensus 464 ~-~GiDip~v~~VI~ 477 (556)
T 4a2p_A 464 D-EGIDIVQCNLVVL 477 (556)
T ss_dssp ----------CEEEE
T ss_pred h-cCCCchhCCEEEE
Confidence 2 3456777887775
No 300
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=66.76 E-value=2.9 Score=33.82 Aligned_cols=17 Identities=18% Similarity=0.311 Sum_probs=13.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.++-++++|++|||||.
T Consensus 2 ~~~~I~i~G~~GsGKsT 18 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTT 18 (192)
T ss_dssp -CCEEEEECCTTSCHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 35668889999999994
No 301
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=66.73 E-value=10 Score=34.93 Aligned_cols=70 Identities=19% Similarity=0.280 Sum_probs=47.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC-CCeEEEE----ChHHHHHHHHcCCCCCCC
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL-GAEIVVG----TPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~----TP~~L~~~l~~~~~~l~~ 314 (330)
+.++||.|+|+.-|..++..++.. ++.+...+.|. ... ...++. ..+|||| |- .+ ...+++..
T Consensus 252 ~~~~lVF~~~~~~~~~l~~~L~~~----~~~~~~~~h~~-~r~-~~~f~~g~~~vLvat~s~T~-----~~-~~GiDip~ 319 (414)
T 3oiy_A 252 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSEF-EKN-FEDFKVGKINILIGVQAYYG-----KL-TRGVDLPE 319 (414)
T ss_dssp CSSEEEEESSHHHHHHHHHHHHHT----TCCEEESSSCH-HHH-HHHHHTTSCSEEEEECCTTC-----CC-CCCCCCTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc----CCceehhhcCc-chH-HHHHhCCCCeEEEEecCcCc-----hh-hccCcccc
Confidence 468999999999999999998875 45665234443 222 455554 4799999 62 11 23456777
Q ss_pred -ccEEEee
Q psy17644 315 -VTFLVLD 321 (330)
Q Consensus 315 -i~~lVvD 321 (330)
+.+||.=
T Consensus 320 ~v~~VI~~ 327 (414)
T 3oiy_A 320 RIKYVIFW 327 (414)
T ss_dssp TCCEEEEE
T ss_pred ccCEEEEE
Confidence 8888753
No 302
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=66.57 E-value=5.6 Score=35.61 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|.-+.+++++|+|||..
T Consensus 99 ~g~vi~lvG~nGsGKTTl 116 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTS 116 (302)
T ss_dssp SCEEEEEECCTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456677889999999943
No 303
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=66.57 E-value=3.2 Score=35.86 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.1
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
.+.+++.|++|+|||..
T Consensus 44 ~~~vll~G~~GtGKT~l 60 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLL 60 (268)
T ss_dssp CSCCCCBCSSCSSHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 45689999999999943
No 304
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.45 E-value=2.3 Score=37.77 Aligned_cols=16 Identities=19% Similarity=-0.080 Sum_probs=13.5
Q ss_pred CCcEEEEcCCCChhHH
Q psy17644 204 GRDIIGVAKTGSGKTG 219 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~ 219 (330)
.+.+++.||+|+|||.
T Consensus 36 p~~lLl~GppGtGKT~ 51 (293)
T 3t15_A 36 PLILGIWGGKGQGKSF 51 (293)
T ss_dssp CSEEEEEECTTSCHHH
T ss_pred CeEEEEECCCCCCHHH
Confidence 3568888999999994
No 305
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=66.43 E-value=2.8 Score=33.10 Aligned_cols=13 Identities=38% Similarity=0.534 Sum_probs=11.3
Q ss_pred EEEEcCCCChhHH
Q psy17644 207 IIGVAKTGSGKTG 219 (330)
Q Consensus 207 ~i~~a~TGsGKT~ 219 (330)
++++|++|||||.
T Consensus 4 I~l~G~~GsGKsT 16 (179)
T 3lw7_A 4 ILITGMPGSGKSE 16 (179)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 6778999999994
No 306
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=66.06 E-value=2.3 Score=40.37 Aligned_cols=53 Identities=15% Similarity=0.232 Sum_probs=28.8
Q ss_pred CCCCCCCCCCCHHHHHHHHHC---CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 165 PVSSFGHFGFDEVLMKALRKC---EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~---~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
|-.+|++.+=-..+.+.|... -+..|--++...+ ...|.+++.||+|+|||+.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~---~~prGiLL~GPPGtGKT~l 222 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGI---DPPRGVLLYGPPGTGKTML 222 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC---CCCCEEEEESCTTTTHHHH
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCC---CCCceEEEECCCCCCHHHH
Confidence 446788886444444444321 0111111222111 2346799999999999944
No 307
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=65.93 E-value=3.4 Score=34.87 Aligned_cols=18 Identities=17% Similarity=0.130 Sum_probs=15.0
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
..|+-+.++||+|+|||.
T Consensus 21 ~~G~~~~lvGpsGsGKST 38 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGT 38 (218)
T ss_dssp -CCCCEEEECSTTSSHHH
T ss_pred CCCCEEEEECCCCCCHHH
Confidence 367888899999999994
No 308
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=65.79 E-value=3.3 Score=33.81 Aligned_cols=15 Identities=33% Similarity=0.563 Sum_probs=12.4
Q ss_pred CcEEEEcCCCChhHH
Q psy17644 205 RDIIGVAKTGSGKTG 219 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~ 219 (330)
+=+.++||+|+|||.
T Consensus 2 ~ii~l~GpsGaGKsT 16 (186)
T 3a00_A 2 RPIVISGPSGTGKST 16 (186)
T ss_dssp CCEEEESSSSSSHHH
T ss_pred CEEEEECCCCCCHHH
Confidence 446788999999994
No 309
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=65.73 E-value=2.8 Score=38.08 Aligned_cols=18 Identities=44% Similarity=0.634 Sum_probs=16.0
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
..|+.++++++||||||.
T Consensus 169 ~~g~~v~i~G~~GsGKTT 186 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTT 186 (330)
T ss_dssp HHTCCEEEEESTTSCHHH
T ss_pred cCCCEEEEECCCCCCHHH
Confidence 478899999999999994
No 310
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=65.54 E-value=15 Score=38.49 Aligned_cols=76 Identities=8% Similarity=0.075 Sum_probs=53.8
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH---HHHHhCC---CeEEEEChHHHHHHHHcCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ---SKALELG---AEIVVGTPGRIIDMVKMGATKL 312 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---~~~l~~~---~dIiV~TP~~L~~~l~~~~~~l 312 (330)
.+.++||+|+++.-+..+...+... .++.+..++|+.+..+. ...++.+ ++|+|||- .+ ...+++
T Consensus 502 ~~~k~iVF~~~~~~~~~l~~~L~~~---~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~-----v~-~~GlDl 572 (968)
T 3dmq_A 502 RSQKVLVICAKAATALQLEQVLRER---EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSE-----IG-SEGRNF 572 (968)
T ss_dssp SSSCCCEECSSTHHHHHHHHHHHTT---TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSC-----CT-TCSSCC
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHH---cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecc-----hh-hcCCCc
Confidence 4678999999999999888888742 26788889998765443 3444454 89999992 11 235567
Q ss_pred CCccEEEeecc
Q psy17644 313 NRVTFLVLDEA 323 (330)
Q Consensus 313 ~~i~~lVvDEa 323 (330)
..+.+||+-.+
T Consensus 573 ~~~~~VI~~d~ 583 (968)
T 3dmq_A 573 QFASHMVMFDL 583 (968)
T ss_dssp TTCCEEECSSC
T ss_pred ccCcEEEEecC
Confidence 77877776544
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=65.48 E-value=2.9 Score=36.34 Aligned_cols=14 Identities=36% Similarity=0.223 Sum_probs=11.6
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
++++|+||||||..
T Consensus 4 i~I~G~~GSGKSTl 17 (253)
T 2ze6_A 4 HLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCcCHHHH
Confidence 57889999999843
No 312
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=65.47 E-value=3.3 Score=33.75 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++.++++|++|||||.+
T Consensus 9 ~~~~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 9 KGINILITGTPGTGKTSM 26 (184)
T ss_dssp SSCEEEEECSTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 467789999999999944
No 313
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=65.45 E-value=23 Score=31.71 Aligned_cols=15 Identities=27% Similarity=0.302 Sum_probs=12.6
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-+++.|++|+|||..
T Consensus 40 ~~ll~G~~G~GKT~l 54 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSI 54 (373)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478999999999943
No 314
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=65.45 E-value=3.2 Score=35.30 Aligned_cols=20 Identities=30% Similarity=0.361 Sum_probs=15.1
Q ss_pred hhcCCCcEEEEcCCCChhHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~ 219 (330)
.+-.|+=++++||+|+|||.
T Consensus 12 ~~~~G~ii~l~GpsGsGKST 31 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSS 31 (219)
T ss_dssp ---CCCEEEEECCTTSCHHH
T ss_pred cCCCCcEEEEECCCCCCHHH
Confidence 34577888899999999994
No 315
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=64.78 E-value=15 Score=37.32 Aligned_cols=76 Identities=14% Similarity=0.111 Sum_probs=37.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCc--------eEEEEECCCchHHHH---HHHhC--CCeEEEEChHHHHHHH
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNL--------SVVCCYGGGSKWDQS---KALEL--GAEIVVGTPGRIIDMV 305 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~--------~~~~~~gg~~~~~~~---~~l~~--~~dIiV~TP~~L~~~l 305 (330)
.+.++||.|+++..|..+...+.......++ ....+.||.+...+. ..++. ..+|||||- .+
T Consensus 630 ~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~-----~~ 704 (797)
T 4a2q_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (797)
T ss_dssp SSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcC-----ch
Confidence 4679999999999999999999874322222 233334444443332 33333 368999993 22
Q ss_pred HcCCCCCCCccEEEe
Q psy17644 306 KMGATKLNRVTFLVL 320 (330)
Q Consensus 306 ~~~~~~l~~i~~lVv 320 (330)
. ..+++..+.+||.
T Consensus 705 ~-~GIDlp~v~~VI~ 718 (797)
T 4a2q_A 705 D-EGIDIVQCNLVVL 718 (797)
T ss_dssp -------CCCSEEEE
T ss_pred h-cCCCchhCCEEEE
Confidence 2 2456778888875
No 316
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=64.72 E-value=4.1 Score=33.74 Aligned_cols=33 Identities=21% Similarity=0.303 Sum_probs=20.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHH
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~ 251 (330)
+++.+++||||| +|..-+. .. +..+++++....
T Consensus 2 ilV~Gg~~SGKS-~~A~~la----~~-------~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKS-RHAEALI----GD-------APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHH-HHHHHHH----CS-------CSSEEEEECCCC
T ss_pred EEEECCCCCcHH-HHHHHHH----hc-------CCCeEEEecCCC
Confidence 578899999999 3433221 11 345788877443
No 317
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=64.47 E-value=2.4 Score=34.30 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|.-++++|+.|||||..
T Consensus 3 ~g~~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQ 20 (186)
T ss_dssp CEEEEEEECCTTSCHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 455688899999999943
No 318
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=64.41 E-value=5.2 Score=31.65 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=11.5
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
.++.+++|+|||..
T Consensus 26 ~~I~G~NGsGKSti 39 (149)
T 1f2t_A 26 NLIIGQNGSGKSSL 39 (149)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56779999999944
No 319
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=64.00 E-value=4.4 Score=33.70 Aligned_cols=17 Identities=24% Similarity=0.257 Sum_probs=13.1
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.|++|||||.
T Consensus 21 ~g~~v~I~G~sGsGKST 37 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKST 37 (208)
T ss_dssp SCEEEEEECCTTSCTHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45556677999999993
No 320
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=63.87 E-value=5.2 Score=37.94 Aligned_cols=53 Identities=9% Similarity=-0.006 Sum_probs=37.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC-CCeEEEEC
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL-GAEIVVGT 297 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~-~~dIiV~T 297 (330)
+.++||.|||+.-|..++..+++. +..+..+.|.. .......++. ...|||||
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~----g~~v~~lh~~~-R~~~~~~f~~g~~~iLVaT 243 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRA----GKKVIQLNRKS-YDTEYPKCKNGDWDFVITT 243 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT----TCCEEEESTTC-CCCCGGGSSSCCCSEEEES
T ss_pred CCCEEEEeCChHHHHHHHHHHHhc----CCcEEecCHHH-HHHHHhhccCCCceEEEEC
Confidence 568999999999999999998876 56677776642 2111222222 46899999
No 321
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=63.71 E-value=3.9 Score=41.34 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=18.1
Q ss_pred hhhhhcCCCcEEEE--cCCCChhHHH
Q psy17644 197 AVPAALSGRDIIGV--AKTGSGKTGA 220 (330)
Q Consensus 197 ~i~~~~~g~d~i~~--a~TGsGKT~a 220 (330)
++..+++|.++.+. |+||||||.+
T Consensus 454 ~v~~~~~G~n~~i~ayGqtgsGKT~T 479 (715)
T 4h1g_A 454 LIQCSLDGTNVCVFAYGQTGSGKTFT 479 (715)
T ss_dssp HHHHHHTTCCEEEEEESSTTSSHHHH
T ss_pred HHHHHhCCceEEEEccCCCCCchhhc
Confidence 55667788875444 9999999965
No 322
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=63.59 E-value=4.6 Score=32.52 Aligned_cols=15 Identities=33% Similarity=0.297 Sum_probs=12.0
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
=+++++++|+|||..
T Consensus 28 ~~~i~G~NGsGKStl 42 (182)
T 3kta_A 28 FTAIVGANGSGKSNI 42 (182)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred cEEEECCCCCCHHHH
Confidence 456779999999943
No 323
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=63.17 E-value=9.6 Score=31.08 Aligned_cols=14 Identities=36% Similarity=0.302 Sum_probs=11.4
Q ss_pred cEEEEcCCCChhHH
Q psy17644 206 DIIGVAKTGSGKTG 219 (330)
Q Consensus 206 d~i~~a~TGsGKT~ 219 (330)
-+++++++|+|||.
T Consensus 8 ~i~i~G~sGsGKTT 21 (174)
T 1np6_A 8 LLAFAAWSGTGKTT 21 (174)
T ss_dssp EEEEECCTTSCHHH
T ss_pred EEEEEeCCCCCHHH
Confidence 36677999999993
No 324
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=63.12 E-value=3.8 Score=33.82 Aligned_cols=18 Identities=33% Similarity=0.527 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|+-++++|++|||||..
T Consensus 28 ~g~~i~l~G~~GsGKSTl 45 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTI 45 (200)
T ss_dssp CCCEEEEECCTTSCHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 467788899999999943
No 325
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=63.11 E-value=3.2 Score=33.51 Aligned_cols=19 Identities=21% Similarity=0.230 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCChhHHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~ 221 (330)
.|.=+.++|++|||||..+
T Consensus 8 ~gei~~l~G~nGsGKSTl~ 26 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFA 26 (171)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566788899999999443
No 326
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.80 E-value=4 Score=33.98 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.0
Q ss_pred hhcCCCcEEEEcCCCChhHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~ 219 (330)
.+..|+-+.+++|+|+|||.
T Consensus 16 ~i~~Gei~~l~GpnGsGKST 35 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKST 35 (207)
T ss_dssp ---CCCEEEEECSTTSSHHH
T ss_pred CCCCCCEEEEECCCCCCHHH
Confidence 45678888899999999994
No 327
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=62.53 E-value=1.4 Score=42.43 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=43.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHH---HHHHhC-CCeEEEEChHHHHHHHHcCCCCCCCc
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQ---SKALEL-GAEIVVGTPGRIIDMVKMGATKLNRV 315 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~---~~~l~~-~~dIiV~TP~~L~~~l~~~~~~l~~i 315 (330)
+.++||.|+++.-|..++..+... +..+.+++|+.....+ ...++. ..+|||||- ++. ...++..+
T Consensus 357 ~~~~LVF~~s~~~a~~l~~~L~~~----~~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-----~l~-~GiDip~v 426 (508)
T 3fho_A 357 IGQSIIFCKKKDTAEEIARRMTAD----GHTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-----VIA-RGIDVSQV 426 (508)
T ss_dssp CCCEEEBCSSTTTTTHHHHHHTTT----TCCCCEEC-----CTTGGGTHHHHSSSCCCCEECC-----------CCCTTC
T ss_pred CCcEEEEECCHHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-----hhh-cCCCccCC
Confidence 468999999999999888877654 5667777777654322 233333 468899994 222 34566777
Q ss_pred cEEEe
Q psy17644 316 TFLVL 320 (330)
Q Consensus 316 ~~lVv 320 (330)
.+||.
T Consensus 427 ~~VI~ 431 (508)
T 3fho_A 427 NLVVN 431 (508)
T ss_dssp CEEEC
T ss_pred CEEEE
Confidence 77774
No 328
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=62.40 E-value=7.3 Score=35.17 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=13.6
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++-+++++++|+|||..
T Consensus 104 ~~~vI~ivG~~G~GKTT~ 121 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTS 121 (320)
T ss_dssp SCEEEEEESSTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345577779999999944
No 329
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=62.10 E-value=8.3 Score=31.15 Aligned_cols=18 Identities=33% Similarity=0.298 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|.-++++|..|||||..
T Consensus 12 ~~~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTI 29 (186)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 456688889999999943
No 330
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=61.97 E-value=3.9 Score=33.53 Aligned_cols=17 Identities=35% Similarity=0.247 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|+-++++|+.|||||.
T Consensus 3 ~~~~I~l~G~~GsGKsT 19 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTT 19 (204)
T ss_dssp CCCEEEEECCTTSSHHH
T ss_pred CCcEEEEEcCCCCCHHH
Confidence 46778889999999994
No 331
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=61.93 E-value=4.1 Score=37.66 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=14.3
Q ss_pred CCCcE--EEEcCCCChhHHHH
Q psy17644 203 SGRDI--IGVAKTGSGKTGAF 221 (330)
Q Consensus 203 ~g~d~--i~~a~TGsGKT~a~ 221 (330)
.|.+. +.-|+||||||.+.
T Consensus 82 ~G~n~tifAYGqTGSGKTyTM 102 (360)
T 1ry6_A 82 NGCVCSCFAYGQTGSGKTYTM 102 (360)
T ss_dssp HCCEEEEEEECCTTSSHHHHH
T ss_pred CCceeEEEeeCCCCCCCCEEE
Confidence 57774 55599999999543
No 332
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=61.90 E-value=3.5 Score=33.02 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|+-++++|++|||||..
T Consensus 7 ~g~~i~l~G~~GsGKSTl 24 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAV 24 (175)
T ss_dssp TSEEEEEECSTTSCHHHH
T ss_pred CCcEEEEEcCCCCCHHHH
Confidence 355678889999999943
No 333
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=61.83 E-value=7.5 Score=35.82 Aligned_cols=18 Identities=33% Similarity=0.353 Sum_probs=13.9
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|.-+.+++++|+|||..
T Consensus 156 ~g~vi~lvG~nGsGKTTl 173 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTS 173 (359)
T ss_dssp SSEEEEEECCTTSCHHHH
T ss_pred CCeEEEEEcCCCChHHHH
Confidence 455677889999999943
No 334
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=61.80 E-value=39 Score=31.64 Aligned_cols=20 Identities=30% Similarity=0.200 Sum_probs=17.0
Q ss_pred cCCCcEEEEcCCCChhHHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGAF 221 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~ 221 (330)
-.|+-+.+.+++|+|||...
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl 191 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLL 191 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHH
T ss_pred cCCcEEEEecCCCCChhHHH
Confidence 37899999999999999543
No 335
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=61.75 E-value=7.5 Score=35.29 Aligned_cols=17 Identities=41% Similarity=0.319 Sum_probs=13.8
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+++++|+|||.
T Consensus 128 ~g~vi~lvG~nGaGKTT 144 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTT 144 (328)
T ss_dssp SSEEEEEECCTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45667788999999994
No 336
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=61.40 E-value=10 Score=32.61 Aligned_cols=20 Identities=40% Similarity=0.514 Sum_probs=14.7
Q ss_pred CCC-cEEEEcCCCChhHHHHH
Q psy17644 203 SGR-DIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 203 ~g~-d~i~~a~TGsGKT~a~l 222 (330)
.|+ .+++.++.|.|||.+.+
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHH
Confidence 344 47778999999995544
No 337
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=61.34 E-value=6.2 Score=32.81 Aligned_cols=30 Identities=20% Similarity=0.085 Sum_probs=21.2
Q ss_pred CCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 190 pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
.++.++.. ..+..|+-++++|++|||||..
T Consensus 12 ~~~~~r~~-~~~~~~~~i~~~G~~GsGKsT~ 41 (211)
T 1m7g_A 12 LTRSERTE-LRNQRGLTIWLTGLSASGKSTL 41 (211)
T ss_dssp CCHHHHHH-HHTSSCEEEEEECSTTSSHHHH
T ss_pred cCHHHhhc-ccCCCCCEEEEECCCCCCHHHH
Confidence 34555554 3455677888899999999843
No 338
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=61.09 E-value=4 Score=32.54 Aligned_cols=15 Identities=33% Similarity=0.406 Sum_probs=12.1
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-++++|++|||||..
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 367889999999843
No 339
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=60.97 E-value=6.1 Score=35.55 Aligned_cols=16 Identities=13% Similarity=0.193 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCChhH
Q psy17644 203 SGRDIIGVAKTGSGKT 218 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT 218 (330)
.|+-+.+++|+|+|||
T Consensus 125 ~Ge~vaIvGpsGsGKS 140 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKS 140 (305)
T ss_dssp TCSEEEEECSSSSSHH
T ss_pred CCCEEEEECCCCCcHH
Confidence 6788888999999999
No 340
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=60.81 E-value=49 Score=33.59 Aligned_cols=89 Identities=13% Similarity=0.113 Sum_probs=54.7
Q ss_pred CChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC----
Q psy17644 214 GSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL---- 289 (330)
Q Consensus 214 GsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~---- 289 (330)
.|||. ..+.-+|..+.. .+.++||.+..+..+.-+...+... ++.+..+.|+.+...+...+..
T Consensus 554 ~s~K~-~~L~~lL~~~~~-------~g~kvLIFsq~~~~ld~L~~~L~~~----g~~~~~i~G~~~~~eR~~~i~~F~~~ 621 (800)
T 3mwy_W 554 SSGKM-VLLDQLLTRLKK-------DGHRVLIFSQMVRMLDILGDYLSIK----GINFQRLDGTVPSAQRRISIDHFNSP 621 (800)
T ss_dssp TCHHH-HHHHHHHHHHTT-------TTCCEEEEESCHHHHHHHHHHHHHH----TCCCEEESTTSCHHHHHHHHHTTSST
T ss_pred cChHH-HHHHHHHHHHhh-------CCCeEEEEechHHHHHHHHHHHHhC----CCCEEEEeCCCCHHHHHHHHHHhhCC
Confidence 46665 334444444432 4679999999999888777777654 6677888888877665554433
Q ss_pred CCe---EEEEChHHHHHHHHcCCCCCCCccEEEe
Q psy17644 290 GAE---IVVGTPGRIIDMVKMGATKLNRVTFLVL 320 (330)
Q Consensus 290 ~~d---IiV~TP~~L~~~l~~~~~~l~~i~~lVv 320 (330)
... +|++|- .. ...+++..+..||+
T Consensus 622 ~~~~~v~LlSt~-ag-----g~GlNL~~a~~VI~ 649 (800)
T 3mwy_W 622 DSNDFVFLLSTR-AG-----GLGINLMTADTVVI 649 (800)
T ss_dssp TCSCCCEEEEHH-HH-----TTTCCCTTCCEEEE
T ss_pred CCCceEEEEecc-cc-----cCCCCccccceEEE
Confidence 122 555552 11 23456666666665
No 341
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=60.50 E-value=7.7 Score=37.45 Aligned_cols=35 Identities=26% Similarity=0.288 Sum_probs=21.0
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
|.-+.++|++|+|||... -.|..++.. .+.+++|.
T Consensus 293 GeVI~LVGpNGSGKTTLl--~~LAgll~~------~~G~V~l~ 327 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTI--GKLARQFEQ------QGKSVMLA 327 (503)
T ss_dssp TEEEEEECCTTSSHHHHH--HHHHHHHHH------TTCCEEEE
T ss_pred CeEEEEECCCcccHHHHH--HHHHHHhhh------cCCeEEEe
Confidence 445677799999999432 234444432 24566665
No 342
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=60.44 E-value=6.6 Score=32.09 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=11.7
Q ss_pred cEEEEcCCCChhHH
Q psy17644 206 DIIGVAKTGSGKTG 219 (330)
Q Consensus 206 d~i~~a~TGsGKT~ 219 (330)
.+.+.+++|+|||.
T Consensus 2 ~i~l~G~nGsGKTT 15 (178)
T 1ye8_A 2 KIIITGEPGVGKTT 15 (178)
T ss_dssp EEEEECCTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 36788999999994
No 343
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=60.28 E-value=12 Score=36.29 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+.++++.+.||||||.+
T Consensus 166 ~~pHlLIaG~TGSGKSt~ 183 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVG 183 (512)
T ss_dssp GSCSEEEECCTTSSHHHH
T ss_pred cCceEEEECCCCCCHHHH
Confidence 457899999999999943
No 344
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=60.17 E-value=4.3 Score=32.12 Aligned_cols=15 Identities=20% Similarity=-0.126 Sum_probs=12.1
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-++++|+.|||||..
T Consensus 3 ~i~l~G~~GsGKsT~ 17 (173)
T 3kb2_A 3 LIILEGPDCCFKSTV 17 (173)
T ss_dssp EEEEECSSSSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 367789999999943
No 345
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=59.87 E-value=5.2 Score=36.36 Aligned_cols=15 Identities=33% Similarity=0.381 Sum_probs=12.5
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-++++|+||||||..
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 478889999999943
No 346
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=59.68 E-value=6.1 Score=32.66 Aligned_cols=20 Identities=25% Similarity=0.024 Sum_probs=15.6
Q ss_pred hcCCCcEEEEcCCCChhHHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a 220 (330)
+..|.-+++.+++|+|||..
T Consensus 17 i~~G~~~~i~G~~GsGKTtl 36 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTL 36 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHH
T ss_pred CcCCEEEEEECCCCCCHHHH
Confidence 34567788889999999943
No 347
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=59.43 E-value=3.8 Score=33.91 Aligned_cols=23 Identities=35% Similarity=0.128 Sum_probs=16.9
Q ss_pred hhhhcCCCcEEEEcCCCChhHHH
Q psy17644 198 VPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 198 i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
++.+..+.-+.+.|++|||||..
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl 37 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTL 37 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHH
Confidence 44555566677889999999943
No 348
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=59.30 E-value=6.2 Score=36.09 Aligned_cols=18 Identities=44% Similarity=0.501 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
....+++.|++|+|||..
T Consensus 71 ~~~~ill~Gp~GtGKT~l 88 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLM 88 (376)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCCCEEEECCCCCCHHHH
Confidence 456899999999999943
No 349
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=59.15 E-value=7.9 Score=34.59 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.5
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
.++++.|++|+|||..
T Consensus 59 ~~~ll~G~~G~GKT~l 74 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTST 74 (353)
T ss_dssp CCEEEECSTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4599999999999943
No 350
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=59.13 E-value=12 Score=31.28 Aligned_cols=34 Identities=24% Similarity=0.114 Sum_probs=24.1
Q ss_pred CcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE
Q psy17644 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil 246 (330)
-.+++..++|.|||.+.+--++..+- .|-+|+|+
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g--------~G~rV~~v 62 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVG--------HGKNVGVV 62 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHH--------TTCCEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHH--------CCCeEEEE
Confidence 35777788999999776655554442 47788887
No 351
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=58.98 E-value=8.6 Score=34.50 Aligned_cols=13 Identities=31% Similarity=0.325 Sum_probs=11.0
Q ss_pred EEEEcCCCChhHH
Q psy17644 207 IIGVAKTGSGKTG 219 (330)
Q Consensus 207 ~i~~a~TGsGKT~ 219 (330)
+++.|+.|||||.
T Consensus 7 ~~i~G~~GaGKTT 19 (318)
T 1nij_A 7 TLLTGFLGAGKTT 19 (318)
T ss_dssp EEEEESSSSSCHH
T ss_pred EEEEecCCCCHHH
Confidence 5677999999994
No 352
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=58.87 E-value=8.3 Score=31.86 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=13.3
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
|.-+.+++++|+|||..
T Consensus 1 G~~i~i~G~nG~GKTTl 17 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTL 17 (189)
T ss_dssp CCCEEEESCCSSCHHHH
T ss_pred CCEEEEECCCCChHHHH
Confidence 34577889999999943
No 353
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=58.77 E-value=2 Score=39.11 Aligned_cols=56 Identities=13% Similarity=0.236 Sum_probs=0.0
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHH---hC-CCeEEEECh
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL---EL-GAEIVVGTP 298 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l---~~-~~dIiV~TP 298 (330)
.+.++||+|+|+.-|..++..++.. +..+..++|+.....+...+ +. ...|||||.
T Consensus 258 ~~~~~lVf~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~ 317 (394)
T 1fuu_A 258 SVTQAVIFCNTRRKVEELTTKLRND----KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTD 317 (394)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCCcEEEEECCHHHHHHHHHHHHHc----CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECC
Confidence 3568999999999999888887764 55677777776544433222 22 357888884
No 354
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=58.31 E-value=7.2 Score=33.91 Aligned_cols=19 Identities=47% Similarity=0.634 Sum_probs=16.4
Q ss_pred cCCCcEEEEcCCCChhHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a 220 (330)
+.|+.++++|++|+|||..
T Consensus 46 l~g~~i~l~G~~GsGKSTl 64 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTV 64 (250)
T ss_dssp HTTCCEEEECSTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3589999999999999944
No 355
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=58.25 E-value=4.4 Score=33.27 Aligned_cols=17 Identities=35% Similarity=0.309 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.++-++++|+.|||||.
T Consensus 3 ~~~~I~i~G~~GsGKsT 19 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSS 19 (213)
T ss_dssp CCEEEEEECCTTSSHHH
T ss_pred CCeEEEEEcCCCCCHHH
Confidence 45668888999999994
No 356
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=58.09 E-value=13 Score=36.41 Aligned_cols=26 Identities=31% Similarity=0.454 Sum_probs=18.1
Q ss_pred CCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 204 GRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
..++++.+.||||||.+ +-.++..++
T Consensus 214 ~pHlLIaG~TGSGKS~~-L~tlI~sLl 239 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVG-VNAMLLSIL 239 (574)
T ss_dssp SCCEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHH-HHHHHHHHH
Confidence 35899999999999944 333444444
No 357
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=57.98 E-value=12 Score=33.80 Aligned_cols=23 Identities=17% Similarity=0.161 Sum_probs=14.7
Q ss_pred EEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 207 IIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
+.+.|++|||||.. +-+|..++.
T Consensus 95 igI~GpsGSGKSTl--~~~L~~ll~ 117 (321)
T 3tqc_A 95 IGIAGSVAVGKSTT--SRVLKALLS 117 (321)
T ss_dssp EEEECCTTSSHHHH--HHHHHHHHT
T ss_pred EEEECCCCCCHHHH--HHHHHHHhc
Confidence 44559999999933 334555554
No 358
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=57.89 E-value=5.9 Score=36.26 Aligned_cols=15 Identities=47% Similarity=0.388 Sum_probs=12.1
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-++++|+||||||..
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 467789999999943
No 359
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=57.68 E-value=6.7 Score=35.81 Aligned_cols=17 Identities=24% Similarity=0.282 Sum_probs=14.5
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
.+.+++.|++|+|||..
T Consensus 84 ~~~iLL~GppGtGKT~l 100 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYL 100 (355)
T ss_dssp CCCEEEECSTTSCHHHH
T ss_pred CceEEEECCCCCcHHHH
Confidence 46799999999999944
No 360
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=57.63 E-value=4.4 Score=32.74 Aligned_cols=17 Identities=18% Similarity=0.208 Sum_probs=13.4
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++-++++|++|||||..
T Consensus 3 ~~~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQ 19 (196)
T ss_dssp CEEEEEECCTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34578889999999844
No 361
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=57.54 E-value=11 Score=43.97 Aligned_cols=48 Identities=21% Similarity=0.208 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHCCCCCCCHHHH----HhhhhhcCCCcEEEEcCCCChhHHHHH
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQA----QAVPAALSGRDIIGVAKTGSGKTGAFI 222 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~----~~i~~~~~g~d~i~~a~TGsGKT~a~l 222 (330)
+...+.+.+.+.++. +++.+. +....+...+.++++||||||||.++-
T Consensus 890 l~~~i~~~~~~~~l~-~~~~~~~K~~ql~e~~~~r~gvmlvGptgsGKTt~~~ 941 (2695)
T 4akg_A 890 IVQCLKDAGQRSGFS-MSEEFLKKCMQFYYMQKTQQALILVGKAGCGKTATWK 941 (2695)
T ss_dssp HHHHHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHCSEEEEECSTTSSHHHHHH
T ss_pred HHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHhcceEEEECCCCCCHHHHHH
Confidence 455566677777764 555542 223344466789999999999996643
No 362
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=57.41 E-value=7.3 Score=32.57 Aligned_cols=15 Identities=33% Similarity=0.353 Sum_probs=12.4
Q ss_pred EEEEcCCCChhHHHH
Q psy17644 207 IIGVAKTGSGKTGAF 221 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~ 221 (330)
.+++|+.|||||...
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 578899999999653
No 363
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.40 E-value=5.4 Score=32.33 Aligned_cols=19 Identities=32% Similarity=0.251 Sum_probs=15.1
Q ss_pred cCCCcEEEEcCCCChhHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a 220 (330)
..++-++++|+.|||||..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQ 25 (196)
T ss_dssp TTSCEEEEEECTTSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3566788889999999943
No 364
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=57.35 E-value=14 Score=37.02 Aligned_cols=74 Identities=15% Similarity=0.114 Sum_probs=49.3
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccC-----------------------------CCceEEEEECCCchHHHHHH---H
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKG-----------------------------YNLSVVCCYGGGSKWDQSKA---L 287 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~-----------------------------~~~~~~~~~gg~~~~~~~~~---l 287 (330)
+.++||.||||.-|..++..+...... ....+..++||.+...+... +
T Consensus 237 ~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f 316 (720)
T 2zj8_A 237 KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENF 316 (720)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHH
T ss_pred CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHH
Confidence 578999999999999999888764321 01237788888887665433 2
Q ss_pred hC-CCeEEEEChHHHHHHHHcCCCCCCCccEEE
Q psy17644 288 EL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLV 319 (330)
Q Consensus 288 ~~-~~dIiV~TP~~L~~~l~~~~~~l~~i~~lV 319 (330)
+. ...|||||. .+ ....++..+.+||
T Consensus 317 ~~g~~~vlvaT~-----~l-~~Gvdip~~~~VI 343 (720)
T 2zj8_A 317 RKGIIKAVVATP-----TL-SAGINTPAFRVII 343 (720)
T ss_dssp HTTSSCEEEECS-----TT-GGGCCCCBSEEEE
T ss_pred HCCCCeEEEECc-----Hh-hccCCCCceEEEE
Confidence 33 468999994 12 1244566666654
No 365
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=57.11 E-value=4.8 Score=37.84 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=11.6
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
++++||||+|||..
T Consensus 5 i~i~GptgsGKttl 18 (409)
T 3eph_A 5 IVIAGTTGVGKSQL 18 (409)
T ss_dssp EEEEECSSSSHHHH
T ss_pred EEEECcchhhHHHH
Confidence 56779999999944
No 366
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=57.11 E-value=5.2 Score=32.48 Aligned_cols=16 Identities=25% Similarity=0.302 Sum_probs=12.5
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
+-+++++++|+|||..
T Consensus 3 ~ii~l~G~~GaGKSTl 18 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTT 18 (189)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCcHHHH
Confidence 3467789999999943
No 367
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=57.04 E-value=3.6 Score=34.80 Aligned_cols=19 Identities=26% Similarity=0.312 Sum_probs=11.5
Q ss_pred hcCCCcEEEEcCCCChhHH
Q psy17644 201 ALSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~ 219 (330)
+..|+-+.++||+|+|||.
T Consensus 24 v~~G~ii~l~Gp~GsGKST 42 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTT 42 (231)
T ss_dssp EECCCEEEEECSCC----C
T ss_pred cCCCCEEEEECCCCCCHHH
Confidence 3467778888999999993
No 368
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=57.01 E-value=4.8 Score=35.44 Aligned_cols=16 Identities=31% Similarity=0.380 Sum_probs=13.4
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
..+++.|++|+|||..
T Consensus 48 ~~~ll~G~~GtGKt~l 63 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTEL 63 (311)
T ss_dssp EEEEEESCSSSSHHHH
T ss_pred eEEEEECCCCcCHHHH
Confidence 3689999999999944
No 369
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=56.91 E-value=13 Score=35.27 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
...++++.|++|+|||..
T Consensus 200 ~~~~~LL~G~pG~GKT~l 217 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAI 217 (468)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 446899999999999954
No 370
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=56.90 E-value=4.6 Score=32.72 Aligned_cols=17 Identities=29% Similarity=0.231 Sum_probs=13.5
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++-++++|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTL 21 (193)
T ss_dssp CEEEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45578889999999943
No 371
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=56.85 E-value=16 Score=35.17 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=30.1
Q ss_pred hhcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~ 262 (330)
-+..|.-+++.+++|+|||... ..++.. ... .|-+++++++... ..|+...+..
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl-~~l~g~-~~~------~G~~vi~~~~ee~-~~~l~~~~~~ 330 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLV-SRFVEN-ACA------NKERAILFAYEES-RAQLLRNAYS 330 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHH-HHHHHH-HHT------TTCCEEEEESSSC-HHHHHHHHHT
T ss_pred CCCCCcEEEEEeCCCCCHHHHH-HHHHHH-HHh------CCCCEEEEEEeCC-HHHHHHHHHH
Confidence 3456778888999999999432 222222 221 2445677765422 2355554443
No 372
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=56.14 E-value=8.3 Score=32.11 Aligned_cols=15 Identities=27% Similarity=0.370 Sum_probs=11.8
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
=.++.+++|+|||..
T Consensus 25 ~~~I~G~NgsGKSti 39 (203)
T 3qks_A 25 INLIIGQNGSGKSSL 39 (203)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred eEEEEcCCCCCHHHH
Confidence 356779999999944
No 373
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=56.14 E-value=41 Score=32.55 Aligned_cols=78 Identities=8% Similarity=0.042 Sum_probs=46.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccC----CCceEEEEECCCch--HHHHHHHhCC-Ce---EEEEChHHHHHHHHcC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKG----YNLSVVCCYGGGSK--WDQSKALELG-AE---IVVGTPGRIIDMVKMG 308 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~----~~~~~~~~~gg~~~--~~~~~~l~~~-~d---IiV~TP~~L~~~l~~~ 308 (330)
.+.++||+|+++.-|..++..+.+.... .+..+..+.|.... ......++.+ .. |+|||- ++. .
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~~r~~~l~~F~~~~~~~~~ilvtt~-----~l~-~ 511 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGKIGKGHLSRFQELETSTPVILTTSQ-----LLT-T 511 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHHHHHHHHHHHHCTTCCCCCEEEESS-----TTT-T
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChHHHHHHHHHHhCCCCCCCEEEEECC-----hhh-c
Confidence 4679999999999999999999876431 12234445555432 1223444442 23 777771 121 2
Q ss_pred CCCCCCccEEEeec
Q psy17644 309 ATKLNRVTFLVLDE 322 (330)
Q Consensus 309 ~~~l~~i~~lVvDE 322 (330)
.+++..+.+||++.
T Consensus 512 GiDip~v~~Vi~~~ 525 (590)
T 3h1t_A 512 GVDAPTCKNVVLAR 525 (590)
T ss_dssp TCCCTTEEEEEEES
T ss_pred CccchheeEEEEEe
Confidence 34566666666644
No 374
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=56.00 E-value=9.9 Score=31.57 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=12.1
Q ss_pred CCccEEEeecccccC
Q psy17644 313 NRVTFLVLDEADRMF 327 (330)
Q Consensus 313 ~~i~~lVvDEad~ll 327 (330)
....+|||||+|.+.
T Consensus 103 ~~~~vliiDe~~~~~ 117 (242)
T 3bos_A 103 EQFDLICIDDVDAVA 117 (242)
T ss_dssp GGSSEEEEETGGGGT
T ss_pred cCCCEEEEecccccc
Confidence 456799999999874
No 375
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=55.93 E-value=5.5 Score=32.76 Aligned_cols=16 Identities=31% Similarity=0.538 Sum_probs=13.2
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
+-++++|+.|||||..
T Consensus 19 ~~I~l~G~~GsGKSTl 34 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSV 34 (202)
T ss_dssp SCEEEECSTTSCHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4688889999999943
No 376
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=55.74 E-value=13 Score=30.67 Aligned_cols=17 Identities=24% Similarity=-0.078 Sum_probs=12.5
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
+.=+.++|++|||||..
T Consensus 22 ~~~i~i~G~~GsGKstl 38 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTL 38 (201)
T ss_dssp SEEEEEEECTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34466679999999943
No 377
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=55.74 E-value=11 Score=41.84 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=20.3
Q ss_pred CCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
.|+-+++.+++|+||| ++++.++.....
T Consensus 382 ~G~lilI~G~pGsGKT-tLaLq~a~~~~~ 409 (1706)
T 3cmw_A 382 MGRIVEIYGPESSGKT-TLTLQVIAAAQR 409 (1706)
T ss_dssp TTSEEEEECSTTSSHH-HHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHH-HHHHHHHHHHHH
Confidence 4567888899999999 455555555544
No 378
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=55.50 E-value=5.3 Score=36.77 Aligned_cols=16 Identities=25% Similarity=0.399 Sum_probs=12.9
Q ss_pred cEEEEcCCCChhHHHH
Q psy17644 206 DIIGVAKTGSGKTGAF 221 (330)
Q Consensus 206 d~i~~a~TGsGKT~a~ 221 (330)
-.+++|+||+|||..+
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4667899999999554
No 379
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=55.39 E-value=8.7 Score=34.60 Aligned_cols=16 Identities=25% Similarity=0.339 Sum_probs=13.6
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
..+++.||+|+|||..
T Consensus 52 ~~~ll~Gp~G~GKTTL 67 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTL 67 (334)
T ss_dssp CCEEEESSTTSSHHHH
T ss_pred CeEEEECCCCCcHHHH
Confidence 5789999999999943
No 380
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=55.15 E-value=14 Score=37.90 Aligned_cols=56 Identities=16% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHCCCC-CCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKCEYT-SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~~~~-~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
.|-.+|.+++.-....+.|...-.. .-.|.+..-+ -+...+.+++.+|.|+|||+.
T Consensus 471 ~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~-g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 471 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKF-GMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSS-CCCCCSCCEEESSTTSSHHHH
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhc-CCCCCceEEEecCCCCCchHH
Confidence 4556799988777777777553211 1111110000 012346799999999999943
No 381
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=55.07 E-value=6.1 Score=33.89 Aligned_cols=17 Identities=29% Similarity=0.423 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+++|+|||||.
T Consensus 30 ~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKST 46 (235)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778888999999993
No 382
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=55.06 E-value=29 Score=35.63 Aligned_cols=55 Identities=15% Similarity=0.061 Sum_probs=38.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh--CCCeEEEECh
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE--LGAEIVVGTP 298 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~--~~~dIiV~TP 298 (330)
+..+||.|.|++-+..+...+++. |+.+.++.|.....+...... ....|+|||.
T Consensus 441 gqpvLVft~sie~se~Ls~~L~~~----gi~~~vLnak~~~rEa~iia~agr~G~VtIATn 497 (853)
T 2fsf_A 441 GQPVLVGTISIEKSELVSNELTKA----GIKHNVLNAKFHANEAAIVAQAGYPAAVTIATN 497 (853)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHT----TCCCEECCTTCHHHHHHHHHTTTSTTCEEEEES
T ss_pred CCCEEEEECcHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEecc
Confidence 556899999999999998888875 667777777654333322211 1247999993
No 383
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.05 E-value=5 Score=38.02 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHC---CCCCCCHHHHHhhhhhcCCCcEEEEcCCCChhHHH
Q psy17644 164 YPVSSFGHFGFDEVLMKALRKC---EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 164 ~p~~~f~~~~l~~~l~~~l~~~---~~~~pt~iQ~~~i~~~~~g~d~i~~a~TGsGKT~a 220 (330)
.|-.+|++.+=-....+.|... -+..|.-++...++ -.+.+++.||+|+|||+.
T Consensus 176 ~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~---~prGvLLyGPPGTGKTlL 232 (437)
T 4b4t_I 176 SPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIK---PPKGVILYGAPGTGKTLL 232 (437)
T ss_dssp SCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC---CCSEEEEESSTTTTHHHH
T ss_pred CCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC---CCCCCceECCCCchHHHH
Confidence 3556799987334444444321 11122222222221 247899999999999954
No 384
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=54.70 E-value=27 Score=36.35 Aligned_cols=77 Identities=14% Similarity=0.092 Sum_probs=40.2
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEE--------EEECCCchHHHH---HHHhC--CCeEEEEChHHHHHHH
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVV--------CCYGGGSKWDQS---KALEL--GAEIVVGTPGRIIDMV 305 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~--------~~~gg~~~~~~~---~~l~~--~~dIiV~TP~~L~~~l 305 (330)
.+.++||.++|+..+..+...+.......++++. .++|+.+..++. ..++. ..+|||||- .+
T Consensus 630 ~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~-----~~ 704 (936)
T 4a2w_A 630 PQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATS-----VA 704 (936)
T ss_dssp TTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEEC-----C-
T ss_pred CCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeC-----ch
Confidence 4689999999999999999999875322223333 334445443332 33333 368999993 22
Q ss_pred HcCCCCCCCccEEEee
Q psy17644 306 KMGATKLNRVTFLVLD 321 (330)
Q Consensus 306 ~~~~~~l~~i~~lVvD 321 (330)
. ..+++..+.+||.=
T Consensus 705 ~-eGIDlp~v~~VI~y 719 (936)
T 4a2w_A 705 D-EGIDIVQCNLVVLY 719 (936)
T ss_dssp ------CCCCSEEEEE
T ss_pred h-cCCcchhCCEEEEe
Confidence 2 34567788888763
No 385
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=54.70 E-value=8.4 Score=31.76 Aligned_cols=16 Identities=38% Similarity=0.069 Sum_probs=12.1
Q ss_pred CCcEEEEcCCCChhHH
Q psy17644 204 GRDIIGVAKTGSGKTG 219 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~ 219 (330)
|.-+.+.|++|||||.
T Consensus 6 ~~~i~i~G~~GsGKST 21 (211)
T 3asz_A 6 PFVIGIAGGTASGKTT 21 (211)
T ss_dssp CEEEEEEESTTSSHHH
T ss_pred cEEEEEECCCCCCHHH
Confidence 3345677999999994
No 386
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=54.36 E-value=17 Score=33.11 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=12.6
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
.-+++++.+|+|||..
T Consensus 80 ~~I~i~G~~G~GKSTl 95 (355)
T 3p32_A 80 HRVGITGVPGVGKSTA 95 (355)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577789999999943
No 387
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=53.35 E-value=40 Score=35.58 Aligned_cols=39 Identities=13% Similarity=0.199 Sum_probs=29.4
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhcc--------CCCceEEEEECC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGK--------GYNLSVVCCYGG 277 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~--------~~~~~~~~~~gg 277 (330)
.+.++||+|+++.-|..++..+.++.. ..++++.++++|
T Consensus 536 ~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~ 582 (1038)
T 2w00_A 536 KGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSF 582 (1038)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCC
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeC
Confidence 356899999999999999999988762 123566555554
No 388
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=53.32 E-value=13 Score=32.98 Aligned_cols=18 Identities=33% Similarity=0.243 Sum_probs=13.9
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++-+.+++++|+|||..
T Consensus 97 ~~~~i~i~g~~G~GKTT~ 114 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTT 114 (295)
T ss_dssp SSEEEEEECCTTTTHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 456677779999999843
No 389
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=52.98 E-value=7.8 Score=31.86 Aligned_cols=19 Identities=32% Similarity=0.293 Sum_probs=14.9
Q ss_pred cCCCcEEEEcCCCChhHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a 220 (330)
..|.-++++|++|||||..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp SCCEEEEEECSTTSSHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3566778889999999843
No 390
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=52.84 E-value=9.2 Score=37.70 Aligned_cols=14 Identities=21% Similarity=0.458 Sum_probs=13.2
Q ss_pred cEEEEcCCCChhHH
Q psy17644 206 DIIGVAKTGSGKTG 219 (330)
Q Consensus 206 d~i~~a~TGsGKT~ 219 (330)
++++.|++|+|||.
T Consensus 329 ~vLL~GppGtGKT~ 342 (595)
T 3f9v_A 329 HILIIGDPGTAKSQ 342 (595)
T ss_dssp CEEEEESSCCTHHH
T ss_pred ceEEECCCchHHHH
Confidence 89999999999994
No 391
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=52.73 E-value=6 Score=35.03 Aligned_cols=17 Identities=29% Similarity=0.323 Sum_probs=13.4
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
+.-++++|++|||||..
T Consensus 33 ~~livl~G~sGsGKSTl 49 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSL 49 (287)
T ss_dssp CEEEEEECCTTSCTHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34578889999999943
No 392
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=52.66 E-value=4 Score=36.60 Aligned_cols=17 Identities=24% Similarity=0.370 Sum_probs=14.2
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
...+++.|++|+|||..
T Consensus 45 ~~~vLl~G~~GtGKT~l 61 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTA 61 (350)
T ss_dssp GCCEEEECCGGGCTTHH
T ss_pred CceEEEECCCCccHHHH
Confidence 45699999999999943
No 393
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=52.63 E-value=7.3 Score=31.95 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=13.9
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+.-++++|+.|||||..
T Consensus 19 ~~~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp SCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345588889999999943
No 394
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=52.54 E-value=88 Score=26.90 Aligned_cols=81 Identities=15% Similarity=0.158 Sum_probs=51.2
Q ss_pred cCCCcEEEEcC-CCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 202 LSGRDIIGVAK-TGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 202 ~~g~d~i~~a~-TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
++||-+|+.+. .|-|+..+-. +.. .|-+++++.-..+-+.++.++++.. +.++..+......
T Consensus 5 L~gKvalVTGas~GIG~aiA~~------la~-------~Ga~Vv~~~~~~~~~~~~~~~i~~~----g~~~~~~~~Dvt~ 67 (254)
T 4fn4_A 5 LKNKVVIVTGAGSGIGRAIAKK------FAL-------NDSIVVAVELLEDRLNQIVQELRGM----GKEVLGVKADVSK 67 (254)
T ss_dssp GTTCEEEEETTTSHHHHHHHHH------HHH-------TTCEEEEEESCHHHHHHHHHHHHHT----TCCEEEEECCTTS
T ss_pred CCCCEEEEeCCCCHHHHHHHHH------HHH-------cCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEccCCC
Confidence 57888888843 4567764432 222 4778888777778888888888775 3456666666655
Q ss_pred HHHHHHHh-------CCCeEEEEChH
Q psy17644 281 WDQSKALE-------LGAEIVVGTPG 299 (330)
Q Consensus 281 ~~~~~~l~-------~~~dIiV~TP~ 299 (330)
......+- ...||+|.+.+
T Consensus 68 ~~~v~~~~~~~~~~~G~iDiLVNNAG 93 (254)
T 4fn4_A 68 KKDVEEFVRRTFETYSRIDVLCNNAG 93 (254)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECCC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECCc
Confidence 44433321 25788886543
No 395
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=52.51 E-value=6.3 Score=31.68 Aligned_cols=18 Identities=28% Similarity=0.372 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|.-++++++.|||||..
T Consensus 4 ~g~~i~l~G~~GsGKST~ 21 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTV 21 (179)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456678889999999843
No 396
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=52.43 E-value=36 Score=32.01 Aligned_cols=74 Identities=18% Similarity=0.117 Sum_probs=47.1
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHH---HHHhCC--Ce-EEEEChHHHHHHHHcCCCCC
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS---KALELG--AE-IVVGTPGRIIDMVKMGATKL 312 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~---~~l~~~--~d-IiV~TP~~L~~~l~~~~~~l 312 (330)
.+.++||.+.++..+..+...+.... +..+..+.|+.+..+.. ..++.+ +. |+|+|-. . ...+++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~---~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~-----~-~~Glnl 410 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL---NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKA-----G-GFGINL 410 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH---TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCC-----C--CCCCC
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh---CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEeccc-----c-cCCCch
Confidence 46789999999999988888887632 45667788888755443 333333 33 5666621 1 124456
Q ss_pred CCccEEEee
Q psy17644 313 NRVTFLVLD 321 (330)
Q Consensus 313 ~~i~~lVvD 321 (330)
..+..||+=
T Consensus 411 ~~~~~vi~~ 419 (500)
T 1z63_A 411 TSANRVIHF 419 (500)
T ss_dssp TTCSEEEES
T ss_pred hhCCEEEEe
Confidence 677766653
No 397
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=52.27 E-value=49 Score=34.25 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=38.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHhC--CCeEEEEC
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL--GAEIVVGT 297 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~~--~~dIiV~T 297 (330)
+..+||.|.|++-+..+...+++. |+.+.++.|.....+....... ...|+|||
T Consensus 460 gqpvLVft~Sie~sE~Ls~~L~~~----Gi~~~vLnak~~~rEa~iia~agr~G~VtIAT 515 (922)
T 1nkt_A 460 GQPVLIGTTSVERSEYLSRQFTKR----RIPHNVLNAKYHEQEATIIAVAGRRGGVTVAT 515 (922)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHT----TCCCEEECSSCHHHHHHHHHTTTSTTCEEEEE
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC----CCCEEEecCChhHHHHHHHHhcCCCCeEEEec
Confidence 456899999999999998888875 6777778877544332222111 24799999
No 398
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=52.26 E-value=9.3 Score=30.57 Aligned_cols=17 Identities=24% Similarity=0.157 Sum_probs=13.7
Q ss_pred cCCCcEEEEcCCCChhH
Q psy17644 202 LSGRDIIGVAKTGSGKT 218 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT 218 (330)
..|.-+.+.++.|+|||
T Consensus 31 ~~Ge~v~L~G~nGaGKT 47 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKT 47 (158)
T ss_dssp SSCEEEEEECSTTSSHH
T ss_pred CCCCEEEEECCCCCCHH
Confidence 35566777899999999
No 399
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=51.54 E-value=32 Score=31.37 Aligned_cols=15 Identities=20% Similarity=0.197 Sum_probs=9.7
Q ss_pred EEEE-cCCCChhHHHH
Q psy17644 207 IIGV-AKTGSGKTGAF 221 (330)
Q Consensus 207 ~i~~-a~TGsGKT~a~ 221 (330)
+.+. +.-|.|||...
T Consensus 146 Iav~s~KGGvGKTT~a 161 (373)
T 3fkq_A 146 VIFTSPCGGVGTSTVA 161 (373)
T ss_dssp EEEECSSTTSSHHHHH
T ss_pred EEEECCCCCChHHHHH
Confidence 4444 57789999543
No 400
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=51.48 E-value=7.2 Score=32.08 Aligned_cols=19 Identities=26% Similarity=0.219 Sum_probs=15.3
Q ss_pred cCCCcEEEEcCCCChhHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a 220 (330)
..++-++++|+.|||||..
T Consensus 8 ~~~~~I~l~G~~GsGKST~ 26 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQ 26 (212)
T ss_dssp BCSCEEEEEESTTSSHHHH
T ss_pred hcCCEEEEEcCCCCCHHHH
Confidence 4567788899999999943
No 401
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=51.31 E-value=7.1 Score=31.78 Aligned_cols=14 Identities=36% Similarity=0.342 Sum_probs=11.3
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
+.+++++|||||..
T Consensus 5 v~IvG~SGsGKSTL 18 (171)
T 2f1r_A 5 LSIVGTSDSGKTTL 18 (171)
T ss_dssp EEEEESCHHHHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56779999999943
No 402
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=51.17 E-value=8.1 Score=30.87 Aligned_cols=15 Identities=33% Similarity=0.481 Sum_probs=12.7
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.++++++.|||||..
T Consensus 6 ~i~i~G~~GsGKsTl 20 (175)
T 1via_A 6 NIVFIGFMGSGKSTL 20 (175)
T ss_dssp CEEEECCTTSCHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 588899999999843
No 403
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=51.04 E-value=7.7 Score=33.26 Aligned_cols=17 Identities=29% Similarity=0.491 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+++++|+|||.
T Consensus 30 ~Ge~~~i~G~nGsGKST 46 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSS 46 (237)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 404
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=50.77 E-value=7.5 Score=32.68 Aligned_cols=17 Identities=24% Similarity=0.182 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++-++++|++|||||..
T Consensus 7 ~~~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTV 23 (227)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688899999999943
No 405
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=50.75 E-value=7.7 Score=30.72 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.4
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
+.+++.+..|||||..
T Consensus 8 ~~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSL 23 (168)
T ss_dssp CEEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 5688889999999944
No 406
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=50.59 E-value=10 Score=34.83 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.2
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
=.+++|+||+|||..
T Consensus 27 l~vi~G~NGaGKT~i 41 (371)
T 3auy_A 27 IVAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 357779999999954
No 407
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=50.57 E-value=7.7 Score=34.17 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=13.1
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.|++|+|||..
T Consensus 48 ~~ll~G~~G~GKT~l 62 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTA 62 (327)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 589999999999943
No 408
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=50.52 E-value=17 Score=30.88 Aligned_cols=14 Identities=43% Similarity=0.520 Sum_probs=11.2
Q ss_pred cEEEEcCCCChhHH
Q psy17644 206 DIIGVAKTGSGKTG 219 (330)
Q Consensus 206 d~i~~a~TGsGKT~ 219 (330)
-+++.+..|+|||.
T Consensus 16 i~~~~GkgGvGKTT 29 (262)
T 1yrb_A 16 IVVFVGTAGSGKTT 29 (262)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEeCCCCCCHHH
Confidence 45667999999994
No 409
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=50.46 E-value=10 Score=32.59 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=14.1
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.|.-+.+.+++|||||..
T Consensus 26 ~g~~I~I~G~~GsGKSTl 43 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTL 43 (252)
T ss_dssp TSCEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 456677789999999844
No 410
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=50.40 E-value=9.5 Score=32.22 Aligned_cols=18 Identities=22% Similarity=0.357 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+..+++.|++|||||..
T Consensus 15 ~~~~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQ 32 (233)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 346788899999999943
No 411
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=50.25 E-value=9.1 Score=30.74 Aligned_cols=16 Identities=31% Similarity=0.368 Sum_probs=13.0
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
.-++++++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTI 18 (184)
T ss_dssp CSEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 3478899999999944
No 412
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=50.18 E-value=9.3 Score=36.06 Aligned_cols=53 Identities=21% Similarity=0.199 Sum_probs=29.0
Q ss_pred CCCCCCCCCCCHHHHHHHHHCCCCCCCHHHHH-hhh-hhcCCCcEEEEcCCCChhHHH
Q psy17644 165 PVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQ-AVP-AALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 165 p~~~f~~~~l~~~l~~~l~~~~~~~pt~iQ~~-~i~-~~~~g~d~i~~a~TGsGKT~a 220 (330)
|-.+|+++.-...+.+.|...-. .|+... .+. .....+.+++.||+|+|||..
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~---~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~l 183 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVI---LPIKFPHLFTGKRTPWRGILLFGPPGTGKSYL 183 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHT---HHHHCTTTTSGGGCCCSEEEEECSTTSSHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHH---HHhhCHHHhhccCCCCceEEEECCCCCCHHHH
Confidence 44568887655566665543210 011100 000 112347899999999999943
No 413
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=50.02 E-value=8.6 Score=32.07 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
+..+++.|+.|||||..
T Consensus 4 ~~~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQ 20 (220)
T ss_dssp CCEEEEECCTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 45688899999999943
No 414
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=49.93 E-value=8.9 Score=32.41 Aligned_cols=17 Identities=29% Similarity=0.268 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 34 ~Ge~~~iiG~NGsGKST 50 (214)
T 1sgw_A 34 KGNVVNFHGPNGIGKTT 50 (214)
T ss_dssp TTCCEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 77888899999999993
No 415
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=49.68 E-value=7.9 Score=32.04 Aligned_cols=14 Identities=29% Similarity=0.427 Sum_probs=11.9
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999843
No 416
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=49.57 E-value=8.6 Score=31.60 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.++-++++|+.|||||..
T Consensus 8 ~~~~I~l~G~~GsGKsT~ 25 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQ 25 (215)
T ss_dssp CCCEEEEEESTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 466788889999999943
No 417
>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}
Probab=49.28 E-value=1e+02 Score=25.67 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=48.1
Q ss_pred cCCCcEEEEcCCC-ChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 202 LSGRDIIGVAKTG-SGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 202 ~~g~d~i~~a~TG-sGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
+.++-+++.+.+| -|+.++- ++.. .|.+++++..+.+-+.++...+... +.++..+.+....
T Consensus 7 ~~~k~vlITGas~giG~~~a~------~l~~-------~G~~V~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~D~~~ 69 (253)
T 3qiv_A 7 FENKVGIVTGSGGGIGQAYAE------ALAR-------EGAAVVVADINAEAAEAVAKQIVAD----GGTAISVAVDVSD 69 (253)
T ss_dssp TTTCEEEEETTTSHHHHHHHH------HHHH-------TTCEEEEEESCHHHHHHHHHHHHHT----TCEEEEEECCTTS
T ss_pred cCCCEEEEECCCChHHHHHHH------HHHH-------CCCEEEEEcCCHHHHHHHHHHHHhc----CCcEEEEEccCCC
Confidence 4678888886654 3665433 3333 3677888888877777777777654 3355555555554
Q ss_pred HHHHHHHh-------CCCeEEEECh
Q psy17644 281 WDQSKALE-------LGAEIVVGTP 298 (330)
Q Consensus 281 ~~~~~~l~-------~~~dIiV~TP 298 (330)
......+. .+.|+||.+.
T Consensus 70 ~~~~~~~~~~~~~~~g~id~li~~A 94 (253)
T 3qiv_A 70 PESAKAMADRTLAEFGGIDYLVNNA 94 (253)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 44332222 2678888654
No 418
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=49.25 E-value=12 Score=36.70 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=17.8
Q ss_pred hhhcCCCcEEEEcCCCChhHHH
Q psy17644 199 PAALSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 199 ~~~~~g~d~i~~a~TGsGKT~a 220 (330)
..+..|+.+++.+++|+|||..
T Consensus 55 ~~i~~g~~vll~Gp~GtGKTtl 76 (604)
T 3k1j_A 55 TAANQKRHVLLIGEPGTGKSML 76 (604)
T ss_dssp HHHHTTCCEEEECCTTSSHHHH
T ss_pred ccccCCCEEEEEeCCCCCHHHH
Confidence 3445788999999999999943
No 419
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=49.24 E-value=15 Score=32.65 Aligned_cols=17 Identities=35% Similarity=0.352 Sum_probs=13.2
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++-+++++++|+|||..
T Consensus 98 ~~vi~i~G~~G~GKTT~ 114 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTT 114 (297)
T ss_dssp SEEEEEECSSCSSTTHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45567779999999944
No 420
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=49.15 E-value=8.1 Score=32.19 Aligned_cols=15 Identities=27% Similarity=0.200 Sum_probs=12.1
Q ss_pred CcEEEEcCCCChhHH
Q psy17644 205 RDIIGVAKTGSGKTG 219 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~ 219 (330)
.-+.+.|++|||||.
T Consensus 6 ~~i~i~G~~GsGKST 20 (227)
T 1cke_A 6 PVITIDGPSGAGKGT 20 (227)
T ss_dssp CEEEEECCTTSSHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 456778999999984
No 421
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=49.14 E-value=6.8 Score=31.80 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=13.7
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++-++++|++|||||..
T Consensus 12 ~~~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQ 28 (199)
T ss_dssp SCEEEEEECTTSSHHHH
T ss_pred CCEEEEECCCCCCHHHH
Confidence 45688889999999943
No 422
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=49.12 E-value=37 Score=34.12 Aligned_cols=18 Identities=28% Similarity=0.394 Sum_probs=15.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+.+++++|++|+|||..
T Consensus 206 ~~~~vlL~G~~GtGKT~l 223 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAI 223 (758)
T ss_dssp SSCEEEEECCTTSSHHHH
T ss_pred CCCCeEEEcCCCCCHHHH
Confidence 457899999999999944
No 423
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=49.10 E-value=7.8 Score=31.10 Aligned_cols=13 Identities=31% Similarity=0.271 Sum_probs=11.3
Q ss_pred EEEEcCCCChhHH
Q psy17644 207 IIGVAKTGSGKTG 219 (330)
Q Consensus 207 ~i~~a~TGsGKT~ 219 (330)
++++|+.|||||.
T Consensus 4 I~i~G~~GsGKsT 16 (194)
T 1nks_A 4 GIVTGIPGVGKST 16 (194)
T ss_dssp EEEEECTTSCHHH
T ss_pred EEEECCCCCCHHH
Confidence 6788999999994
No 424
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=49.03 E-value=9.3 Score=31.91 Aligned_cols=17 Identities=18% Similarity=0.141 Sum_probs=13.8
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++-++++|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQ 21 (222)
T ss_dssp SCCEEEEESTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 35688999999999943
No 425
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=48.64 E-value=8.2 Score=31.00 Aligned_cols=15 Identities=27% Similarity=0.344 Sum_probs=12.3
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-++++|+.|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 477889999999943
No 426
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=48.54 E-value=8.8 Score=33.15 Aligned_cols=17 Identities=41% Similarity=0.518 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 34 ~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKST 50 (247)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 427
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=48.53 E-value=19 Score=33.52 Aligned_cols=17 Identities=18% Similarity=0.135 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+++.+++|+|||.
T Consensus 177 ~Gei~~I~G~sGsGKTT 193 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQ 193 (400)
T ss_dssp TTSEEEEEESTTSSHHH
T ss_pred CCcEEEEEcCCCCChHH
Confidence 56778888999999994
No 428
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=48.45 E-value=8.9 Score=32.66 Aligned_cols=17 Identities=35% Similarity=0.515 Sum_probs=14.9
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 33 ~Ge~~~i~G~nGsGKST 49 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTS 49 (229)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67888889999999993
No 429
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=48.41 E-value=8.1 Score=31.65 Aligned_cols=15 Identities=27% Similarity=0.279 Sum_probs=12.0
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-+.++|++|||||..
T Consensus 3 ~i~i~G~~GsGKSTl 17 (204)
T 2if2_A 3 RIGLTGNIGCGKSTV 17 (204)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 367789999999943
No 430
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=48.35 E-value=9.6 Score=30.10 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.0
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
+-++++++.|||||..
T Consensus 3 ~~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTV 18 (173)
T ss_dssp CCEEEESCTTSSHHHH
T ss_pred ceEEEECCCCCCHHHH
Confidence 4578889999999943
No 431
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=48.18 E-value=9 Score=33.36 Aligned_cols=17 Identities=47% Similarity=0.556 Sum_probs=14.8
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 45 ~Ge~~~i~G~nGsGKST 61 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKST 61 (260)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67788888999999993
No 432
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=48.00 E-value=8.7 Score=31.82 Aligned_cols=15 Identities=20% Similarity=0.421 Sum_probs=12.3
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.++++|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 377889999999843
No 433
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=47.88 E-value=10 Score=36.44 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=14.4
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
.+.++++||+|+|||.+
T Consensus 77 ~~~lLL~GppGtGKTtl 93 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTA 93 (516)
T ss_dssp CSEEEEECSTTSSHHHH
T ss_pred CcEEEEECCCCCCHHHH
Confidence 36799999999999944
No 434
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=47.78 E-value=8.9 Score=33.82 Aligned_cols=17 Identities=24% Similarity=0.306 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+|+|+|||.
T Consensus 33 ~Ge~~~iiGpnGsGKST 49 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKST 49 (275)
T ss_dssp TTSEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 435
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=47.76 E-value=18 Score=41.01 Aligned_cols=39 Identities=18% Similarity=0.175 Sum_probs=25.8
Q ss_pred hcCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEc
Q psy17644 201 ALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247 (330)
Q Consensus 201 ~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~ 247 (330)
+-.|+.+++++++|+|||...+ .++....+ .|-+++|+.
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~-~~~~ea~k-------~Ge~~~Fit 1116 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTL-QVIAAAQR-------EGKTCAFID 1116 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHH-HHHHHHHT-------TTCCEEEEC
T ss_pred cCCCcEEEEECCCCCCHHHHHH-HHHHHHHH-------cCCeEEEEE
Confidence 4478999999999999995433 33333333 355666664
No 436
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=47.71 E-value=8.9 Score=31.50 Aligned_cols=14 Identities=36% Similarity=0.292 Sum_probs=11.3
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
+.+.|+.|||||..
T Consensus 5 i~l~G~~GsGKST~ 18 (206)
T 1jjv_A 5 VGLTGGIGSGKTTI 18 (206)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56779999999943
No 437
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=47.42 E-value=8.8 Score=36.87 Aligned_cols=18 Identities=33% Similarity=0.373 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
..+.+++.|++|+|||+.
T Consensus 237 ~~~~vLL~GppGtGKT~l 254 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLI 254 (489)
T ss_dssp CCCEEEEECSTTSSHHHH
T ss_pred CCCcEEEECcCCCCHHHH
Confidence 446799999999999953
No 438
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=47.37 E-value=11 Score=35.81 Aligned_cols=16 Identities=31% Similarity=0.391 Sum_probs=13.7
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
..+++.|++|+|||..
T Consensus 51 ~~vLL~GppGtGKTtl 66 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTL 66 (447)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred cEEEEECCCCCcHHHH
Confidence 4689999999999943
No 439
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=47.33 E-value=9.2 Score=33.46 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+++++|+|||.
T Consensus 36 ~Ge~~~liG~nGsGKST 52 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKST 52 (266)
T ss_dssp TTCEEEEECCTTSCHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778888999999993
No 440
>3czc_A RMPB; alpha/beta sandwich, phosphotransferase system, transferase, transport; 2.02A {Streptococcus mutans}
Probab=47.32 E-value=27 Score=25.91 Aligned_cols=57 Identities=14% Similarity=0.011 Sum_probs=30.9
Q ss_pred CCeEEEEcccHHHHHHHHH-HHHHhccCCCce-EEEEECCCchHHHHHHHhCCCeEEEEChH
Q psy17644 240 GPMGLILAPTRELSQQIYN-EAKRFGKGYNLS-VVCCYGGGSKWDQSKALELGAEIVVGTPG 299 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~-~~~~l~~~~~~~-~~~~~gg~~~~~~~~~l~~~~dIiV~TP~ 299 (330)
..++|++|++---...+.. .+++.++..++. +..-..+. ... ......+|+||+||.
T Consensus 18 ~~kIlvvC~sG~gTS~m~~~kl~~~~~~~gi~~~~i~~~~~--~~~-~~~~~~~DlIi~t~~ 76 (110)
T 3czc_A 18 MVKVLTACGNGMGSSMVIKMKVENALRQLGVSDIESASCSV--GEA-KGLASNYDIVVASNH 76 (110)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECH--HHH-HHHGGGCSEEEEETT
T ss_pred CcEEEEECCCcHHHHHHHHHHHHHHHHHcCCCeEEEEEeeH--HHH-hhccCCCcEEEECCc
Confidence 3578899987544444444 566665555554 32222211 111 111245899999974
No 441
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=47.13 E-value=9 Score=32.65 Aligned_cols=16 Identities=25% Similarity=0.191 Sum_probs=13.3
Q ss_pred CCcEEEEcCCCChhHH
Q psy17644 204 GRDIIGVAKTGSGKTG 219 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~ 219 (330)
+.-++++|++|||||.
T Consensus 27 ~~~i~l~G~~GsGKST 42 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGT 42 (246)
T ss_dssp CCEEEEECCTTSSHHH
T ss_pred CcEEEEECCCCCCHHH
Confidence 4567888999999994
No 442
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=47.08 E-value=10 Score=35.98 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
..+++++.+|+|+|||..
T Consensus 49 ~~~~iLl~GppGtGKT~l 66 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEI 66 (444)
T ss_dssp CCCCEEEECCTTSSHHHH
T ss_pred CCceEEEEcCCCCCHHHH
Confidence 347899999999999943
No 443
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=47.02 E-value=26 Score=37.02 Aligned_cols=72 Identities=18% Similarity=0.204 Sum_probs=47.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCchHHHHHHHh-CCCeEEEE----ChHHHHHHHHcCCCCCCC
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALE-LGAEIVVG----TPGRIIDMVKMGATKLNR 314 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~~~~~~~l~-~~~dIiV~----TP~~L~~~l~~~~~~l~~ 314 (330)
+.++||.|+|+..|..++..++.. +++..++|+... ....++ ...+|||| | +.+. ..+++..
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~-----~~v~~lhg~~~~--~l~~F~~G~~~VLVaTas~T-----dv~~-rGIDip~ 341 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK-----FRIGIVTATKKG--DYEKFVEGEIDHLIGTAHYY-----GTLV-RGLDLPE 341 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS-----SCEEECTTSSSH--HHHHHHHTSCSEEEEECC------------CCSCCTT
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc-----cCeeEEeccHHH--HHHHHHcCCCcEEEEecCCC-----CeeE-eccccCC
Confidence 578999999999998888776553 567777777642 223333 34799999 5 2233 3667888
Q ss_pred c-cEEEeeccc
Q psy17644 315 V-TFLVLDEAD 324 (330)
Q Consensus 315 i-~~lVvDEad 324 (330)
| .+||.=.+-
T Consensus 342 VI~~VI~~~~P 352 (1054)
T 1gku_B 342 RIRFAVFVGCP 352 (1054)
T ss_dssp TCCEEEEESCC
T ss_pred cccEEEEeCCC
Confidence 4 888765443
No 444
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=46.74 E-value=9.5 Score=31.20 Aligned_cols=15 Identities=27% Similarity=0.339 Sum_probs=12.2
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-++++|+.|||||..
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999944
No 445
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=46.73 E-value=17 Score=34.18 Aligned_cols=16 Identities=44% Similarity=0.463 Sum_probs=13.3
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
+.+++++++|+|||..
T Consensus 100 ~vI~ivG~~GvGKTTl 115 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTT 115 (432)
T ss_dssp CCEEEECCSSSSTTHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 4788889999999944
No 446
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.63 E-value=9.8 Score=33.02 Aligned_cols=17 Identities=29% Similarity=0.466 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKST 48 (257)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 447
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=46.59 E-value=9.9 Score=32.61 Aligned_cols=17 Identities=29% Similarity=0.487 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 31 ~Ge~~~l~G~nGsGKST 47 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTT 47 (240)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 448
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=46.55 E-value=9.4 Score=32.37 Aligned_cols=17 Identities=29% Similarity=0.454 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 29 ~Ge~~~iiG~nGsGKST 45 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKST 45 (224)
T ss_dssp TTCEEEEEECTTSCHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67777888999999993
No 449
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=46.49 E-value=54 Score=29.38 Aligned_cols=83 Identities=10% Similarity=0.020 Sum_probs=46.8
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCC-eEEEEccc---HHHHHHHHHHHHHhccCCCceEEEEECC
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGP-MGLILAPT---RELSQQIYNEAKRFGKGYNLSVVCCYGG 277 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~-~vLil~Pt---r~La~Qi~~~~~~l~~~~~~~~~~~~gg 277 (330)
+.++.+++.+.-|.|+..++.|.. .|. ++.|+.-| .+-+.++...+.... +..+..+ .-
T Consensus 152 l~gk~~lVlGaGG~g~aia~~L~~-------------~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~---~~~~~~~-~~ 214 (315)
T 3tnl_A 152 IIGKKMTICGAGGAATAICIQAAL-------------DGVKEISIFNRKDDFYANAEKTVEKINSKT---DCKAQLF-DI 214 (315)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHH-------------TTCSEEEEEECSSTTHHHHHHHHHHHHHHS---SCEEEEE-ET
T ss_pred ccCCEEEEECCChHHHHHHHHHHH-------------CCCCEEEEEECCCchHHHHHHHHHHhhhhc---CCceEEe-cc
Confidence 467888888766777776655432 244 67777777 777777777666532 3333222 11
Q ss_pred CchHHHHHHHhCCCeEEE-EChHHHH
Q psy17644 278 GSKWDQSKALELGAEIVV-GTPGRII 302 (330)
Q Consensus 278 ~~~~~~~~~l~~~~dIiV-~TP~~L~ 302 (330)
.........+ ..++||| |||..+.
T Consensus 215 ~~~~~l~~~l-~~aDiIINaTp~Gm~ 239 (315)
T 3tnl_A 215 EDHEQLRKEI-AESVIFTNATGVGMK 239 (315)
T ss_dssp TCHHHHHHHH-HTCSEEEECSSTTST
T ss_pred chHHHHHhhh-cCCCEEEECccCCCC
Confidence 1111112223 3478888 5776554
No 450
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=46.35 E-value=70 Score=28.46 Aligned_cols=80 Identities=16% Similarity=0.197 Sum_probs=43.7
Q ss_pred hhcCCCcEEEEcCCCC-hhHHHHHHHHHHHHHhcCCCCCCCCC-eEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECC
Q psy17644 200 AALSGRDIIGVAKTGS-GKTGAFIWPMLVHIMDQKELEPGDGP-MGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGG 277 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGs-GKT~a~llp~l~~i~~~~~~~~~~~~-~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg 277 (330)
..++++.+++.+.||. |+.++ .+++.. .+. .++++.-...-...+... +. . ..+..+.+.
T Consensus 17 ~~~~~k~vlVTGatG~iG~~l~------~~L~~~------~g~~~V~~~~r~~~~~~~~~~~---~~-~--~~v~~~~~D 78 (344)
T 2gn4_A 17 NMLDNQTILITGGTGSFGKCFV------RKVLDT------TNAKKIIVYSRDELKQSEMAME---FN-D--PRMRFFIGD 78 (344)
T ss_dssp CTTTTCEEEEETTTSHHHHHHH------HHHHHH------CCCSEEEEEESCHHHHHHHHHH---HC-C--TTEEEEECC
T ss_pred HhhCCCEEEEECCCcHHHHHHH------HHHHhh------CCCCEEEEEECChhhHHHHHHH---hc-C--CCEEEEECC
Confidence 3467888999998875 66543 333331 144 556655543333322222 21 1 234555566
Q ss_pred CchHHHHHHHhCCCeEEEEC
Q psy17644 278 GSKWDQSKALELGAEIVVGT 297 (330)
Q Consensus 278 ~~~~~~~~~l~~~~dIiV~T 297 (330)
..........-.++|+||-.
T Consensus 79 l~d~~~l~~~~~~~D~Vih~ 98 (344)
T 2gn4_A 79 VRDLERLNYALEGVDICIHA 98 (344)
T ss_dssp TTCHHHHHHHTTTCSEEEEC
T ss_pred CCCHHHHHHHHhcCCEEEEC
Confidence 55555555555578988854
No 451
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=45.80 E-value=10 Score=33.04 Aligned_cols=17 Identities=35% Similarity=0.519 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.|++|+|||.
T Consensus 31 ~Ge~~~liG~nGsGKST 47 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKST 47 (262)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 66777888999999993
No 452
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=45.64 E-value=8.7 Score=33.02 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.4
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 27 ~Ge~~~i~G~nGsGKST 43 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKST 43 (243)
T ss_dssp TTEEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 453
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=45.40 E-value=15 Score=32.57 Aligned_cols=14 Identities=36% Similarity=0.339 Sum_probs=10.7
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
+.++|++|||||..
T Consensus 34 i~I~G~sGsGKSTl 47 (290)
T 1odf_A 34 IFFSGPQGSGKSFT 47 (290)
T ss_dssp EEEECCTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45569999999843
No 454
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=45.29 E-value=10 Score=29.77 Aligned_cols=15 Identities=27% Similarity=0.197 Sum_probs=12.2
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.+..|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEEESCTTSCHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 367889999999943
No 455
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=45.22 E-value=10 Score=30.75 Aligned_cols=13 Identities=31% Similarity=0.445 Sum_probs=11.3
Q ss_pred EEEEcCCCChhHH
Q psy17644 207 IIGVAKTGSGKTG 219 (330)
Q Consensus 207 ~i~~a~TGsGKT~ 219 (330)
+++.|+.|||||.
T Consensus 3 I~i~G~~GsGKsT 15 (205)
T 2jaq_A 3 IAIFGTVGAGKST 15 (205)
T ss_dssp EEEECCTTSCHHH
T ss_pred EEEECCCccCHHH
Confidence 6788999999994
No 456
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=45.13 E-value=37 Score=36.04 Aligned_cols=75 Identities=4% Similarity=-0.091 Sum_probs=45.6
Q ss_pred CCCeEEEEcccHHHHHHHHHHHHHhccCC-----------------------------------CceEEEEECCCchHHH
Q psy17644 239 DGPMGLILAPTRELSQQIYNEAKRFGKGY-----------------------------------NLSVVCCYGGGSKWDQ 283 (330)
Q Consensus 239 ~~~~vLil~Ptr~La~Qi~~~~~~l~~~~-----------------------------------~~~~~~~~gg~~~~~~ 283 (330)
.+.++||.++++.-|.+++..+..++-.. ...+..++||.....+
T Consensus 440 ~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R 519 (1108)
T 3l9o_A 440 KYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILK 519 (1108)
T ss_dssp TCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHH
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHH
Confidence 35689999999999999888775532111 0116778888876655
Q ss_pred HHHH---h-CCCeEEEEChHHHHHHHHcCCCCCCCccEEE
Q psy17644 284 SKAL---E-LGAEIVVGTPGRIIDMVKMGATKLNRVTFLV 319 (330)
Q Consensus 284 ~~~l---~-~~~dIiV~TP~~L~~~l~~~~~~l~~i~~lV 319 (330)
...+ + ....|||||. .+ ...+++..+.+||
T Consensus 520 ~~v~~~F~~G~ikVLVAT~-----vl-a~GIDiP~v~~VI 553 (1108)
T 3l9o_A 520 EVIEILFQEGFLKVLFATE-----TF-SIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHHTCCCEEEEES-----CC-CSCCCC--CEEEE
T ss_pred HHHHHHHhCCCCeEEEECc-----HH-hcCCCCCCceEEE
Confidence 4332 2 2468888883 11 1234566666654
No 457
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=45.12 E-value=38 Score=29.81 Aligned_cols=81 Identities=16% Similarity=0.089 Sum_probs=47.0
Q ss_pred cCCCcEEEEcCCCChhHHHHHHHHHHHHHhcCCCCCCCCC-eEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGP-MGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~-~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
+.++.+++.+.-|.|+..++.+.. .+. ++.|+..+.+-+.++...+...... ..+.. +.-...
T Consensus 125 l~~k~vlVlGaGG~g~aia~~L~~-------------~G~~~v~i~~R~~~~a~~la~~~~~~~~~--~~i~~-~~~~~l 188 (283)
T 3jyo_A 125 AKLDSVVQVGAGGVGNAVAYALVT-------------HGVQKLQVADLDTSRAQALADVINNAVGR--EAVVG-VDARGI 188 (283)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHH-------------TTCSEEEEECSSHHHHHHHHHHHHHHHTS--CCEEE-ECSTTH
T ss_pred cCCCEEEEECCcHHHHHHHHHHHH-------------CCCCEEEEEECCHHHHHHHHHHHHhhcCC--ceEEE-cCHHHH
Confidence 467888888776777776554322 244 5777888888888877777654322 22222 111111
Q ss_pred HHHHHHHhCCCeEEE-EChHHHH
Q psy17644 281 WDQSKALELGAEIVV-GTPGRII 302 (330)
Q Consensus 281 ~~~~~~l~~~~dIiV-~TP~~L~ 302 (330)
. ..+. .+|||| |||..+.
T Consensus 189 ~---~~l~-~~DiVInaTp~Gm~ 207 (283)
T 3jyo_A 189 E---DVIA-AADGVVNATPMGMP 207 (283)
T ss_dssp H---HHHH-HSSEEEECSSTTST
T ss_pred H---HHHh-cCCEEEECCCCCCC
Confidence 1 1222 378888 6776553
No 458
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=45.03 E-value=11 Score=32.96 Aligned_cols=17 Identities=35% Similarity=0.573 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 32 ~Ge~~~liG~nGsGKST 48 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKST 48 (266)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67777888999999993
No 459
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=44.97 E-value=11 Score=32.70 Aligned_cols=17 Identities=29% Similarity=0.436 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 25 ~Ge~~~liG~NGsGKST 41 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKST 41 (249)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778888999999993
No 460
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=44.97 E-value=10 Score=32.81 Aligned_cols=16 Identities=31% Similarity=0.208 Sum_probs=12.8
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
.-++++|.+|||||..
T Consensus 5 ~lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred EEEEEEcCCCCCHHHH
Confidence 3578889999999943
No 461
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=44.95 E-value=8.2 Score=30.86 Aligned_cols=17 Identities=29% Similarity=0.120 Sum_probs=9.7
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
++-++++|..|||||..
T Consensus 5 ~~~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHT 21 (183)
T ss_dssp CCEEEEECCC----CHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 45678889999999843
No 462
>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}
Probab=44.95 E-value=1.2e+02 Score=25.90 Aligned_cols=83 Identities=11% Similarity=-0.068 Sum_probs=44.4
Q ss_pred hhhcCCCcEEEEcCCC-ChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECC
Q psy17644 199 PAALSGRDIIGVAKTG-SGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGG 277 (330)
Q Consensus 199 ~~~~~g~d~i~~a~TG-sGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg 277 (330)
+.++.+|-+++.+.+| -|+.++- ++.. .|-+++++.-..+.+.+....+... +.++..+...
T Consensus 19 ~~m~~~k~~lVTGas~GIG~aia~------~la~-------~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~D 81 (279)
T 3sju_A 19 SHMSRPQTAFVTGVSSGIGLAVAR------TLAA-------RGIAVYGCARDAKNVSAAVDGLRAA----GHDVDGSSCD 81 (279)
T ss_dssp ------CEEEEESTTSHHHHHHHH------HHHH-------TTCEEEEEESCHHHHHHHHHHHHTT----TCCEEEEECC
T ss_pred ccccCCCEEEEeCCCCHHHHHHHH------HHHH-------CCCEEEEEeCCHHHHHHHHHHHHhc----CCcEEEEECC
Confidence 4456788888886553 4665433 2222 3677777777777677766666554 3445555555
Q ss_pred CchHHHHHHHh-------CCCeEEEECh
Q psy17644 278 GSKWDQSKALE-------LGAEIVVGTP 298 (330)
Q Consensus 278 ~~~~~~~~~l~-------~~~dIiV~TP 298 (330)
.........+- ...|+||.+.
T Consensus 82 v~d~~~v~~~~~~~~~~~g~id~lv~nA 109 (279)
T 3sju_A 82 VTSTDEVHAAVAAAVERFGPIGILVNSA 109 (279)
T ss_dssp TTCHHHHHHHHHHHHHHHCSCCEEEECC
T ss_pred CCCHHHHHHHHHHHHHHcCCCcEEEECC
Confidence 54433322211 2578888653
No 463
>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}
Probab=44.89 E-value=1e+02 Score=26.32 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=45.7
Q ss_pred cCCCcEEEEcCC-CChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcccHHHHHHHHHHHHHhccCCCceEEEEECCCch
Q psy17644 202 LSGRDIIGVAKT-GSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSK 280 (330)
Q Consensus 202 ~~g~d~i~~a~T-GsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~~~ 280 (330)
+.+|-+++.+.+ |-|+.++- ++.. .|-+++++.-..+-+.++...+... +..+..+......
T Consensus 2 l~~k~~lVTGas~GIG~aia~------~la~-------~G~~V~~~~r~~~~~~~~~~~l~~~----~~~~~~~~~Dv~d 64 (264)
T 3tfo_A 2 VMDKVILITGASGGIGEGIAR------ELGV-------AGAKILLGARRQARIEAIATEIRDA----GGTALAQVLDVTD 64 (264)
T ss_dssp CTTCEEEESSTTSHHHHHHHH------HHHH-------TTCEEEEEESSHHHHHHHHHHHHHT----TCEEEEEECCTTC
T ss_pred CCCCEEEEeCCccHHHHHHHH------HHHH-------CCCEEEEEECCHHHHHHHHHHHHhc----CCcEEEEEcCCCC
Confidence 456777777554 34665433 2333 3677777777777777777776654 3355555555544
Q ss_pred HHHHHHHh-------CCCeEEEECh
Q psy17644 281 WDQSKALE-------LGAEIVVGTP 298 (330)
Q Consensus 281 ~~~~~~l~-------~~~dIiV~TP 298 (330)
......+- ...|+||.+.
T Consensus 65 ~~~v~~~~~~~~~~~g~iD~lVnnA 89 (264)
T 3tfo_A 65 RHSVAAFAQAAVDTWGRIDVLVNNA 89 (264)
T ss_dssp HHHHHHHHHHHHHHHSCCCEEEECC
T ss_pred HHHHHHHHHHHHHHcCCCCEEEECC
Confidence 43332221 2578888653
No 464
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=44.62 E-value=11 Score=33.04 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 44 ~Ge~~~i~G~nGsGKST 60 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKST 60 (271)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 465
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=44.54 E-value=10 Score=34.04 Aligned_cols=17 Identities=29% Similarity=0.565 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+++++|+|||.
T Consensus 79 ~Ge~vaivG~sGsGKST 95 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKST 95 (306)
T ss_dssp TTCEEEEESSSCHHHHH
T ss_pred CCCEEEEECCCCchHHH
Confidence 67888899999999993
No 466
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=44.48 E-value=11 Score=32.76 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 40 ~Gei~~l~G~NGsGKST 56 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTT 56 (256)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCcEEEEECCCCCCHHH
Confidence 67778888999999993
No 467
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=44.32 E-value=20 Score=37.89 Aligned_cols=32 Identities=13% Similarity=-0.045 Sum_probs=22.7
Q ss_pred ceEEEEECCCchHHHHHHHhCCCeEEEEChHH
Q psy17644 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGR 300 (330)
Q Consensus 269 ~~~~~~~gg~~~~~~~~~l~~~~dIiV~TP~~ 300 (330)
-++.++..+.....+...+..++.|||+|-.+
T Consensus 236 ~~~LlvlDd~~~~~~~~~~~~~~~ilvTtR~~ 267 (1249)
T 3sfz_A 236 PRSLLILDDVWDPWVLKAFDNQCQILLTTRDK 267 (1249)
T ss_dssp CSCEEEEESCCCHHHHTTTCSSCEEEEEESST
T ss_pred CCEEEEEecCCCHHHHHhhcCCCEEEEEcCCH
Confidence 36677777666666666667789999999643
No 468
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=44.21 E-value=11 Score=32.68 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 30 ~Ge~~~l~G~nGsGKST 46 (253)
T 2nq2_C 30 KGDILAVLGQNGCGKST 46 (253)
T ss_dssp TTCEEEEECCSSSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 469
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=44.16 E-value=37 Score=40.29 Aligned_cols=55 Identities=9% Similarity=0.167 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHCCCCCCCHHHHH----hhhhhcCCCcEEEEcCCCChhHHHHHHHHHHHHHh
Q psy17644 174 FDEVLMKALRKCEYTSPTPIQAQ----AVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMD 231 (330)
Q Consensus 174 l~~~l~~~l~~~~~~~pt~iQ~~----~i~~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~~ 231 (330)
|...|.+.+.+.|+. |++.+.. ....+...+.++++||||||||.++- +|...+.
T Consensus 873 l~~ai~~~~~~~~L~-~~~~~v~KviQLye~~~vRhGvmlVGp~gsGKTt~~~--~L~~al~ 931 (3245)
T 3vkg_A 873 LRKKIQEIAKQRHLV-TKQEWVEKILQLHQILNINHGVMMVGPSGGGKTTSWE--VYLEAIE 931 (3245)
T ss_dssp HHHHHHHHHHHTTCC-CCHHHHHHHHHHHHHHTTCSEEEEECSSSSSHHHHHH--HHHHHHT
T ss_pred HHHHHHHHHHHcCCc-cCHHHHHHHHHHHHHHHheeeEEEECCCCCCHHHHHH--HHHHHHH
Confidence 445566666777764 5554322 22334456678899999999996643 5555544
No 470
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=44.10 E-value=11 Score=30.26 Aligned_cols=14 Identities=43% Similarity=0.342 Sum_probs=11.6
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
++++|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 67789999999943
No 471
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=44.08 E-value=10 Score=36.40 Aligned_cols=16 Identities=38% Similarity=0.488 Sum_probs=13.8
Q ss_pred CcEEEEcCCCChhHHH
Q psy17644 205 RDIIGVAKTGSGKTGA 220 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a 220 (330)
+.+++.+|+|+|||..
T Consensus 50 ~gvLL~GppGtGKT~L 65 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLL 65 (476)
T ss_dssp SEEEEECCTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5699999999999954
No 472
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=44.07 E-value=15 Score=33.00 Aligned_cols=17 Identities=18% Similarity=-0.056 Sum_probs=12.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.=+.+.|++|||||.
T Consensus 89 ~g~ivgI~G~sGsGKST 105 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKST 105 (312)
T ss_dssp CCEEEEEECCTTSCHHH
T ss_pred CCEEEEEECCCCchHHH
Confidence 34456666999999993
No 473
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=43.89 E-value=10 Score=38.87 Aligned_cols=17 Identities=24% Similarity=0.350 Sum_probs=15.0
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.++.+++.+|+|+|||.
T Consensus 510 ~~~~vLL~GppGtGKT~ 526 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTL 526 (806)
T ss_dssp CCCCCCCBCCTTSSHHH
T ss_pred CCceeEEECCCCCCHHH
Confidence 56789999999999995
No 474
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=43.71 E-value=8.5 Score=44.76 Aligned_cols=19 Identities=47% Similarity=0.410 Sum_probs=16.7
Q ss_pred cCCCcEEEEcCCCChhHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a 220 (330)
..++.++++||||+|||..
T Consensus 1265 ~~~~~vLL~GPpGtGKT~l 1283 (2695)
T 4akg_A 1265 NSKRGIILCGPPGSGKTMI 1283 (2695)
T ss_dssp HHTCEEEEECSTTSSHHHH
T ss_pred HCCCeEEEECCCCCCHHHH
Confidence 4789999999999999954
No 475
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=43.60 E-value=12 Score=32.79 Aligned_cols=17 Identities=29% Similarity=0.603 Sum_probs=14.5
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 49 ~Gei~~liG~NGsGKST 65 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKST 65 (263)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEEcCCCCcHHH
Confidence 67778888999999993
No 476
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=43.57 E-value=15 Score=31.67 Aligned_cols=17 Identities=24% Similarity=0.329 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 28 ~Ge~~~l~G~nGsGKST 44 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKST 44 (250)
T ss_dssp TTCEEEEECSTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999994
No 477
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=43.36 E-value=28 Score=28.67 Aligned_cols=30 Identities=27% Similarity=0.151 Sum_probs=16.5
Q ss_pred cCCCChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEEcc
Q psy17644 211 AKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP 248 (330)
Q Consensus 211 a~TGsGKT~a~llp~l~~i~~~~~~~~~~~~~vLil~P 248 (330)
..+|.|||.+.+- |.+.+.+ .|.+|+++=|
T Consensus 9 ~kgGvGKTt~a~n--La~~la~------~G~rVll~dp 38 (224)
T 1byi_A 9 TDTEVGKTVASCA--LLQAAKA------AGYRTAGYKP 38 (224)
T ss_dssp SSTTSCHHHHHHH--HHHHHHH------TTCCEEEECS
T ss_pred CCCCCCHHHHHHH--HHHHHHH------CCCCEEEEcc
Confidence 5689999954432 2222222 3556776644
No 478
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=43.35 E-value=12 Score=33.09 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=14.7
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 46 ~Ge~~~liG~NGsGKST 62 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTT 62 (279)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCcHHH
Confidence 67778888999999993
No 479
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=43.26 E-value=22 Score=35.92 Aligned_cols=18 Identities=22% Similarity=0.399 Sum_probs=15.1
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
...++++.|++|+|||..
T Consensus 200 ~~~~vLL~G~pGtGKT~l 217 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAI 217 (758)
T ss_dssp SSCEEEEESCTTTTTHHH
T ss_pred CCCCeEEECCCCCCHHHH
Confidence 446899999999999954
No 480
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=43.07 E-value=27 Score=31.22 Aligned_cols=16 Identities=31% Similarity=0.237 Sum_probs=11.2
Q ss_pred EEEEcCCCChhHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFI 222 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~l 222 (330)
+++.+..|.|||.+.+
T Consensus 17 ~v~sgKGGvGKTTvA~ 32 (324)
T 3zq6_A 17 VFIGGKGGVGKTTISA 32 (324)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEeCCCCchHHHHHH
Confidence 3444888999995544
No 481
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=42.98 E-value=15 Score=32.00 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=14.6
Q ss_pred CCCcEEEEcCCCChhHH
Q psy17644 203 SGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~ 219 (330)
.|.-+.+.+++|+|||.
T Consensus 45 ~Ge~~~l~G~NGsGKST 61 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKST 61 (267)
T ss_dssp TTCEEEEECCTTSSHHH
T ss_pred CCCEEEEECCCCCCHHH
Confidence 67778888999999993
No 482
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=42.93 E-value=11 Score=34.05 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=12.0
Q ss_pred EEEEcCCCChhHHHH
Q psy17644 207 IIGVAKTGSGKTGAF 221 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~ 221 (330)
.+++|++|+|||..+
T Consensus 26 ~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 26 NLIIGQNGSGKSSLL 40 (339)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 467799999999543
No 483
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=42.88 E-value=44 Score=35.45 Aligned_cols=71 Identities=18% Similarity=0.266 Sum_probs=49.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhccCCCceEE-EEECCCchHHHHHHHhC-CCeEEEE----ChHHHHHHHHcCCCCCC
Q psy17644 240 GPMGLILAPTRELSQQIYNEAKRFGKGYNLSVV-CCYGGGSKWDQSKALEL-GAEIVVG----TPGRIIDMVKMGATKLN 313 (330)
Q Consensus 240 ~~~vLil~Ptr~La~Qi~~~~~~l~~~~~~~~~-~~~gg~~~~~~~~~l~~-~~dIiV~----TP~~L~~~l~~~~~~l~ 313 (330)
+.++||.|+|+.-|..++..++.. ++.+. .++| . ... ...++. ..+|||| | +++. ..+++.
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~----g~~~~~~lhg-~-rr~-l~~F~~G~~~VLVatas~T-----dvla-rGIDip 375 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRF----KFNVGETWSE-F-EKN-FEDFKVGKINILIGVQAYY-----GKLT-RGVDLP 375 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHT----TCCEEESSSS-H-HHH-HHHHHHTSCSEEEEETTTH-----HHHC-CSCCCT
T ss_pred CCCEEEEECcHHHHHHHHHHHHhC----CCCeeeEecC-c-HHH-HHHHHCCCCCEEEEecCCC-----CeeE-ecCcCC
Confidence 478999999999999999988875 55665 4444 2 222 444443 4799999 6 2333 466788
Q ss_pred C-ccEEEeecc
Q psy17644 314 R-VTFLVLDEA 323 (330)
Q Consensus 314 ~-i~~lVvDEa 323 (330)
. |++||.=..
T Consensus 376 ~~V~~VI~~d~ 386 (1104)
T 4ddu_A 376 ERIKYVIFWGT 386 (1104)
T ss_dssp TTCCEEEEESC
T ss_pred CCCCEEEEECC
Confidence 8 888886443
No 484
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=42.78 E-value=12 Score=31.27 Aligned_cols=17 Identities=29% Similarity=0.464 Sum_probs=13.5
Q ss_pred CCcEEEEcCCCChhHHH
Q psy17644 204 GRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~a 220 (330)
+..+++.|+.|||||..
T Consensus 5 ~~~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQ 21 (217)
T ss_dssp CCEEEEEECTTSSHHHH
T ss_pred ceEEEEECCCCCCHHHH
Confidence 34688889999999943
No 485
>4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli}
Probab=42.41 E-value=1.2e+02 Score=25.79 Aligned_cols=80 Identities=11% Similarity=-0.043 Sum_probs=43.0
Q ss_pred hcCCCcEEEEcCCC-ChhHHHHHHHHHHHHHhcCCCCCCCCCeEEEE-cccHHHHHHHHHHHHHhccCCCceEEEEECCC
Q psy17644 201 ALSGRDIIGVAKTG-SGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL-APTRELSQQIYNEAKRFGKGYNLSVVCCYGGG 278 (330)
Q Consensus 201 ~~~g~d~i~~a~TG-sGKT~a~llp~l~~i~~~~~~~~~~~~~vLil-~Ptr~La~Qi~~~~~~l~~~~~~~~~~~~gg~ 278 (330)
+..++-+++.+.+| -|+.++- ++.+ .|.+++++ ...++....+...+... +.++..+.+..
T Consensus 23 m~~~k~vlITGas~gIG~a~a~------~l~~-------~G~~V~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Dl 85 (272)
T 4e3z_A 23 MSDTPVVLVTGGSRGIGAAVCR------LAAR-------QGWRVGVNYAANREAADAVVAAITES----GGEAVAIPGDV 85 (272)
T ss_dssp -CCSCEEEETTTTSHHHHHHHH------HHHH-------TTCEEEEEESSCHHHHHHHHHHHHHT----TCEEEEEECCT
T ss_pred ccCCCEEEEECCCchHHHHHHH------HHHH-------CCCEEEEEcCCChhHHHHHHHHHHhc----CCcEEEEEcCC
Confidence 45567677765543 3665432 3333 35666665 66667667766666554 34555555555
Q ss_pred chHHHHHHHh-------CCCeEEEEC
Q psy17644 279 SKWDQSKALE-------LGAEIVVGT 297 (330)
Q Consensus 279 ~~~~~~~~l~-------~~~dIiV~T 297 (330)
........+. ...|+||..
T Consensus 86 ~~~~~v~~~~~~~~~~~g~id~li~n 111 (272)
T 4e3z_A 86 GNAADIAAMFSAVDRQFGRLDGLVNN 111 (272)
T ss_dssp TCHHHHHHHHHHHHHHHSCCCEEEEC
T ss_pred CCHHHHHHHHHHHHHhCCCCCEEEEC
Confidence 5433332221 257888754
No 486
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=42.32 E-value=18 Score=34.82 Aligned_cols=31 Identities=26% Similarity=0.229 Sum_probs=21.0
Q ss_pred hhcCCCcEEEEcCCCChhHHHHHHHHHHHHH
Q psy17644 200 AALSGRDIIGVAKTGSGKTGAFIWPMLVHIM 230 (330)
Q Consensus 200 ~~~~g~d~i~~a~TGsGKT~a~llp~l~~i~ 230 (330)
-+-.|.-+++++++|+|||....+-++..+.
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~ 65 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGII 65 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 3457888999999999999543332234444
No 487
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=42.26 E-value=12 Score=30.47 Aligned_cols=15 Identities=33% Similarity=0.246 Sum_probs=11.7
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-+.+.+++|||||..
T Consensus 10 ~I~i~G~~GsGKST~ 24 (203)
T 1uf9_A 10 IIGITGNIGSGKSTV 24 (203)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366779999999943
No 488
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=42.18 E-value=12 Score=30.11 Aligned_cols=14 Identities=36% Similarity=0.323 Sum_probs=11.4
Q ss_pred EEEEcCCCChhHHH
Q psy17644 207 IIGVAKTGSGKTGA 220 (330)
Q Consensus 207 ~i~~a~TGsGKT~a 220 (330)
+++.|+.|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQ 16 (197)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56779999999843
No 489
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=42.18 E-value=17 Score=32.03 Aligned_cols=16 Identities=13% Similarity=-0.026 Sum_probs=14.0
Q ss_pred CCcEEEEcCCCChhHH
Q psy17644 204 GRDIIGVAKTGSGKTG 219 (330)
Q Consensus 204 g~d~i~~a~TGsGKT~ 219 (330)
|+-+++.|+.|+|||.
T Consensus 31 ~~~v~i~G~~G~GKT~ 46 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSS 46 (350)
T ss_dssp CSEEEEECCTTSSHHH
T ss_pred CCeEEEECCCcCCHHH
Confidence 5778889999999994
No 490
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=42.13 E-value=8 Score=33.27 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=14.0
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+.-++++|++|||||..
T Consensus 31 ~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp SCEEEEEESCGGGTTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 345678889999999943
No 491
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=42.05 E-value=38 Score=30.46 Aligned_cols=18 Identities=17% Similarity=0.123 Sum_probs=14.3
Q ss_pred cCCCcEEEEcCCCChhHH
Q psy17644 202 LSGRDIIGVAKTGSGKTG 219 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~ 219 (330)
..+.-+.+.+++|+|||.
T Consensus 54 ~~~~~i~i~G~~g~GKST 71 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKST 71 (341)
T ss_dssp SCSEEEEEEECTTSCHHH
T ss_pred CCCEEEEEEcCCCCCHHH
Confidence 355667788999999994
No 492
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=41.87 E-value=16 Score=31.18 Aligned_cols=18 Identities=28% Similarity=0.289 Sum_probs=14.2
Q ss_pred CCCcEEEEcCCCChhHHH
Q psy17644 203 SGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 203 ~g~d~i~~a~TGsGKT~a 220 (330)
.+.-+++.|+.|||||..
T Consensus 28 ~~~~I~l~G~~GsGKsT~ 45 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQ 45 (243)
T ss_dssp CCEEEEEECCTTSSHHHH
T ss_pred CCcEEEEECCCCCCHHHH
Confidence 445688889999999843
No 493
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=41.40 E-value=24 Score=30.72 Aligned_cols=15 Identities=33% Similarity=0.395 Sum_probs=12.9
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.|++|+|||..
T Consensus 44 ~~ll~G~~G~GKt~l 58 (323)
T 1sxj_B 44 HMIISGMPGIGKTTS 58 (323)
T ss_dssp CEEEECSTTSSHHHH
T ss_pred eEEEECcCCCCHHHH
Confidence 489999999999943
No 494
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=41.35 E-value=12 Score=30.98 Aligned_cols=15 Identities=27% Similarity=0.235 Sum_probs=12.2
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
.+++.|+.|||||..
T Consensus 2 ~I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 368889999999843
No 495
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=41.28 E-value=50 Score=28.96 Aligned_cols=15 Identities=13% Similarity=0.144 Sum_probs=12.9
Q ss_pred CcEEEEcCCCChhHH
Q psy17644 205 RDIIGVAKTGSGKTG 219 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~ 219 (330)
+-+++.|+.|+|||.
T Consensus 31 ~~v~i~G~~G~GKT~ 45 (357)
T 2fna_A 31 PITLVLGLRRTGKSS 45 (357)
T ss_dssp SEEEEEESTTSSHHH
T ss_pred CcEEEECCCCCCHHH
Confidence 567888999999994
No 496
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=41.26 E-value=27 Score=31.28 Aligned_cols=16 Identities=38% Similarity=0.304 Sum_probs=11.5
Q ss_pred EEEEcCCCChhHHHHH
Q psy17644 207 IIGVAKTGSGKTGAFI 222 (330)
Q Consensus 207 ~i~~a~TGsGKT~a~l 222 (330)
+++.+..|.|||.+.+
T Consensus 22 ~v~sgkGGvGKTTva~ 37 (329)
T 2woo_A 22 IFVGGKGGVGKTTTSC 37 (329)
T ss_dssp EEEECSSSSSHHHHHH
T ss_pred EEEeCCCCCcHHHHHH
Confidence 4455888999995544
No 497
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=40.70 E-value=13 Score=30.80 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=12.0
Q ss_pred cEEEEcCCCChhHHH
Q psy17644 206 DIIGVAKTGSGKTGA 220 (330)
Q Consensus 206 d~i~~a~TGsGKT~a 220 (330)
-+.+.|+.|||||..
T Consensus 6 ~I~i~G~~GSGKST~ 20 (218)
T 1vht_A 6 IVALTGGIGSGKSTV 20 (218)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466779999999943
No 498
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=40.56 E-value=19 Score=27.66 Aligned_cols=14 Identities=14% Similarity=0.413 Sum_probs=12.1
Q ss_pred cEEEEcCCCChhHH
Q psy17644 206 DIIGVAKTGSGKTG 219 (330)
Q Consensus 206 d~i~~a~TGsGKT~ 219 (330)
.++++|++|+|||.
T Consensus 5 ~i~v~G~~~~GKss 18 (170)
T 1ek0_A 5 KLVLLGEAAVGKSS 18 (170)
T ss_dssp EEEEECSTTSSHHH
T ss_pred EEEEECCCCCCHHH
Confidence 47889999999993
No 499
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=40.51 E-value=31 Score=28.85 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=14.8
Q ss_pred cCCCcEEEEcCCCChhHHH
Q psy17644 202 LSGRDIIGVAKTGSGKTGA 220 (330)
Q Consensus 202 ~~g~d~i~~a~TGsGKT~a 220 (330)
+.|+-+++.|+.|+|||..
T Consensus 4 m~g~~i~~eG~~gsGKsT~ 22 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTN 22 (213)
T ss_dssp -CCEEEEEECSTTSSHHHH
T ss_pred CCceEEEEEcCCCCCHHHH
Confidence 4577788889999999843
No 500
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=40.49 E-value=29 Score=33.82 Aligned_cols=19 Identities=26% Similarity=0.134 Sum_probs=13.6
Q ss_pred CcEEEEcCCCChhHHHHHH
Q psy17644 205 RDIIGVAKTGSGKTGAFIW 223 (330)
Q Consensus 205 ~d~i~~a~TGsGKT~a~ll 223 (330)
+-+++.+..|.|||.+.+.
T Consensus 9 ~i~~~sgkGGvGKTT~a~~ 27 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCA 27 (589)
T ss_dssp SEEEEECSTTSSHHHHHHH
T ss_pred EEEEEeCCCcCHHHHHHHH
Confidence 4456668899999965543
Done!