RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17644
(330 letters)
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding,
hydrolase, nucleotide- RNA-binding, methylation, mRNA
processing, mRNA S nucleus; HET: ADP; 2.60A {Homo
sapiens}
Length = 242
Score = 341 bits (877), Expect = e-119
Identities = 93/192 (48%), Positives = 120/192 (62%)
Query: 139 ARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAV 198
+ T QE + R ITV G + P PV +F F +M + + +T PT IQAQ
Sbjct: 1 SMRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGW 60
Query: 199 PAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258
P ALSG D++GVA+TGSGKT +++ P +VHI Q LE GDGP+ L+LAPTREL+QQ+
Sbjct: 61 PVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQ 120
Query: 259 EAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFL 318
A + + L C YGG K Q + LE G EI + TPGR+ID ++ G T L R T+L
Sbjct: 121 VAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYL 180
Query: 319 VLDEADRMFDMG 330
VLDEADRM DMG
Sbjct: 181 VLDEADRMLDMG 192
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex,
ATPase, riken structural genomics/proteomics initiative,
RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Length = 434
Score = 326 bits (838), Expect = e-110
Identities = 73/213 (34%), Positives = 111/213 (52%), Gaps = 8/213 (3%)
Query: 126 EVEKNFYQPHEDIARLTPQEAQELRA--------KSGITVSGADPPYPVSSFGHFGFDEV 177
E FY P E + + + + V+G+D P P+ F ++
Sbjct: 7 EFPGEFYIPPEPSNDAIEIFSSGIASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDI 66
Query: 178 LMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEP 237
++ + K Y PTPIQ ++P SGRD++ A+TGSGKT AF+ P+L +++
Sbjct: 67 IIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELE 126
Query: 238 GDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGT 297
P +I++PTREL+ QI+NEA++F L + YGG S Q++ + G +V+ T
Sbjct: 127 LGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIAT 186
Query: 298 PGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
PGR++D V F+VLDEADRM DMG
Sbjct: 187 PGRLLDFVDRTFITFEDTRFVVLDEADRMLDMG 219
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX,
structural genomics, structural genomi consortium, SGC,
ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Length = 228
Score = 299 bits (769), Expect = e-102
Identities = 63/178 (35%), Positives = 98/178 (55%), Gaps = 3/178 (1%)
Query: 155 ITVSGADPPYPVSSFGH-FGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKT 213
+ P P F F L+K++ + PTPIQ+QA P L G D+I VA+T
Sbjct: 7 KSGEKRLIPKPTCRFKDAFQQYPDLLKSIIRVGILKPTPIQSQAWPIILQGIDLIVVAQT 66
Query: 214 GSGKTGAFIWPMLVHIMDQ-KELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVV 272
G+GKT +++ P +H+ Q E +GP L+L PTREL+ + E ++ L +
Sbjct: 67 GTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-KGLKSI 125
Query: 273 CCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
C YGG ++ Q + + G +I++ TPGR+ D+ + L +T+LV+DEAD+M DM
Sbjct: 126 CIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDME 183
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC,
structural GE consortium, hydrolase; HET: AMP; 2.20A
{Homo sapiens}
Length = 417
Score = 300 bits (771), Expect = e-100
Identities = 72/189 (38%), Positives = 101/189 (53%), Gaps = 13/189 (6%)
Query: 155 ITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTG 214
+ +G + P + SF E++M + YT PTP+Q A+P RD++ A+TG
Sbjct: 3 VEATGNNCPPHIESFSDVEMGEIIMGNIELTRYTRPTPVQKHAIPIIKEKRDLMACAQTG 62
Query: 215 SGKTGAFIWPMLVHIMDQKELEP-------------GDGPMGLILAPTRELSQQIYNEAK 261
SGKT AF+ P+L I E P+ L+LAPTREL+ QIY EA+
Sbjct: 63 SGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEAR 122
Query: 262 RFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLD 321
+F + YGG Q + LE G ++V TPGR++DM++ G L+ +LVLD
Sbjct: 123 KFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLD 182
Query: 322 EADRMFDMG 330
EADRM DMG
Sbjct: 183 EADRMLDMG 191
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA,
N project on protein structural and functional analyses;
2.40A {Dugesia japonica} SCOP: c.37.1.19
Length = 253
Score = 293 bits (752), Expect = e-100
Identities = 68/182 (37%), Positives = 102/182 (56%), Gaps = 6/182 (3%)
Query: 155 ITVSGAD--PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAK 212
++V+G D + +F D + + Y PTPIQ A+PA L RDI+ A+
Sbjct: 9 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQ 68
Query: 213 TGSGKTGAFIWPMLVHIM----DQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268
TGSGKT AF+ P++ H++ +Q+ P LILAPTREL+ QI +E+++F
Sbjct: 69 TGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP 128
Query: 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328
L YGG Q + +++G ++V TPGR++D ++ L ++VLDEADRM D
Sbjct: 129 LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD 188
Query: 329 MG 330
MG
Sbjct: 189 MG 190
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural
genomics, structural GEN consortium, SGC, rRNA,
ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Length = 245
Score = 284 bits (729), Expect = 3e-96
Identities = 60/197 (30%), Positives = 99/197 (50%), Gaps = 14/197 (7%)
Query: 144 QEAQELRAKSGITVSGADPPYPVSSFGH----FGFDEVLMKALRKCEYTSPTPIQAQAVP 199
+ LR K I V G D P P+++F + + L++ + + PTPIQ QA+P
Sbjct: 2 MKINFLRNKHKIHVQGTDLPDPIATFQQLDQEYKINSRLLQNILDAGFQMPTPIQMQAIP 61
Query: 200 AALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE 259
L GR+++ A TGSGKT AF P+L+ + G LI++PTREL+ QI+ E
Sbjct: 62 VMLHGRELLASAPTGSGKTLAFSIPILMQLKQP----ANKGFRALIISPTRELASQIHRE 117
Query: 260 AKRFGKGYNLSVVCCYGGGSKWDQ-SKALELGAEIVVGTPGRIIDMVKMGATKLN--RVT 316
+ +G + + + +I+V TP R+I ++K ++ V
Sbjct: 118 LIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVE 177
Query: 317 FLVLDEADRMFD---MG 330
+LV+DE+D++F+ G
Sbjct: 178 WLVVDESDKLFEDGKTG 194
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus
stearothermophilus} SCOP: c.37.1.19
Length = 219
Score = 201 bits (513), Expect = 4e-64
Identities = 58/168 (34%), Positives = 90/168 (53%), Gaps = 9/168 (5%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
+ F F F +++A++ + PT IQ + +P AL G ++G ++TG+GKT A++ P++
Sbjct: 4 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIM 63
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGK----GYNLSVVCCYGGGSKWD 282
I + +I APTREL+ QIY+E + K + C GG K
Sbjct: 64 EKI-KPER----AEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQK 118
Query: 283 QSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
+ L + IV+GTPGRI D ++ A ++ LV+DEAD M DMG
Sbjct: 119 ALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDMG 166
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural
genomics, structural GEN consortium, SGC, ATP-binding,
hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Length = 249
Score = 202 bits (515), Expect = 5e-64
Identities = 67/199 (33%), Positives = 95/199 (47%), Gaps = 6/199 (3%)
Query: 133 QPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP 192
+ ++ E +F G +VL +A + +T PT
Sbjct: 9 SGVDLGTENLYFQSMEEHDSPTEASQPIVEEEETKTFKDLGVTDVLCEACDQLGWTKPTK 68
Query: 193 IQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252
IQ +A+P AL GRDIIG+A+TGSGKTGAF P+L LE L+L PTREL
Sbjct: 69 IQIEAIPLALQGRDIIGLAETGSGKTGAFALPIL-----NALLETPQRLFALVLTPTREL 123
Query: 253 SQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT-K 311
+ QI + + G + GG QS AL I++ TPGR+ID ++
Sbjct: 124 AFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFN 183
Query: 312 LNRVTFLVLDEADRMFDMG 330
L + +LV+DEADR+ +M
Sbjct: 184 LRALKYLVMDEADRILNMD 202
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic
resolution, AMP complex, ribosome biogenesis,
thermophilic, hydrolase; HET: AMP; 1.20A {Thermus
thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A*
3mwl_A* 3nbf_A* 3nej_A
Length = 207
Score = 197 bits (504), Expect = 6e-63
Identities = 71/163 (43%), Positives = 94/163 (57%), Gaps = 4/163 (2%)
Query: 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLV 227
F F +++AL T+PTPIQA A+P AL G+D+IG A+TG+GKT AF P+
Sbjct: 2 EFKDFPLKPEILEALHGRGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAE 61
Query: 228 HIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKAL 287
+ + E G P L+L PTREL+ Q+ +E +L VV YGG Q +AL
Sbjct: 62 RLAPSQ--ERGRKPRALVLTPTRELALQVASELTAVAP--HLKVVAVYGGTGYGKQKEAL 117
Query: 288 ELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
GA+ VV TPGR +D ++ G L+RV VLDEAD M MG
Sbjct: 118 LRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSMG 160
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural
genomics, structural genomic consortium, SGC, hydrolase;
HET: ADP; 2.15A {Homo sapiens}
Length = 236
Score = 195 bits (499), Expect = 1e-61
Identities = 58/166 (34%), Positives = 93/166 (56%), Gaps = 3/166 (1%)
Query: 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPM 225
++ F F + +K L++ +Y T IQ Q + AL G+D++G AKTGSGKT AF+ P+
Sbjct: 24 ITRFSDFPLSKKTLKGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPV 83
Query: 226 LVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK 285
L + + + DG LI++PTREL+ Q + ++ GK ++ S GG +++
Sbjct: 84 L-EALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAE 142
Query: 286 ALELGAEIVVGTPGRIIDMVKMGAT-KLNRVTFLVLDEADRMFDMG 330
+ I+V TPGR++ + + + LVLDEADR+ DMG
Sbjct: 143 RIN-NINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDMG 187
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding
protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Length = 206
Score = 192 bits (490), Expect = 7e-61
Identities = 55/165 (33%), Positives = 92/165 (55%), Gaps = 6/165 (3%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
+ F + L+ + + + P+PIQ +++P ALSGRDI+ AK G+GK+GA++ P+L
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG-YNLSVVCCYGGGSKWDQSK 285
+ D K+ D +++ PTREL+ Q+ + K V+ GG + D
Sbjct: 63 ERL-DLKK----DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 286 ALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L+ +V+ TPGRI+D++K G K++ V +VLDEAD++
Sbjct: 118 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQD 162
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family,
gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 1qva_A
Length = 224
Score = 188 bits (479), Expect = 6e-59
Identities = 55/165 (33%), Positives = 84/165 (50%), Gaps = 6/165 (3%)
Query: 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPM 225
V F DE L++ + + P+ IQ +A+ + G D++ A++G+GKTG F
Sbjct: 13 VYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAA 72
Query: 226 LVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK 285
L I D P L+LAPTREL+ QI ++ V C GG S + ++
Sbjct: 73 LQRI-DTSVKA----PQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAE 127
Query: 286 ALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L A+IVVGTPGR+ D ++ + +++ +LDEAD M G
Sbjct: 128 GLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 171
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation,
rRNA processing, mRNA splicing, mRNA transport; HET:
ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB:
2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B
2zu6_A
Length = 410
Score = 193 bits (493), Expect = 8e-59
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 5/165 (3%)
Query: 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPM 225
+F G E L++ + + P+ IQ +A+ + GRD+I +++G+GKT F +
Sbjct: 36 TPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISV 95
Query: 226 LVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK 285
L + D + E LILAPTREL+ QI G N+ C GG + + +
Sbjct: 96 LQCL-DIQVRET----QALILAPTRELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIR 150
Query: 286 ALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L+ G +V GTPGR+ DM++ + + + LVLDEAD M + G
Sbjct: 151 KLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics,
structural genomics consort ATP-binding, hydrolase,
nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Length = 262
Score = 189 bits (481), Expect = 9e-59
Identities = 64/216 (29%), Positives = 111/216 (51%), Gaps = 3/216 (1%)
Query: 116 PIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFD 175
HS+ V E ++Q ++ + E + + ++GA +S + +
Sbjct: 4 HHHHSSGVDLGTENLYFQSMNNVEKPDNDEDESEVPSLPLGLTGAFEDTSFASLCN-LVN 62
Query: 176 EVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL 235
E +KA+++ +T+ T IQ +++ L GRD++ AKTGSGKT AF+ P + ++ +
Sbjct: 63 ENTLKAIKEMGFTNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAV-ELIVKLRF 121
Query: 236 EPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVV 295
P +G LIL+PTREL+ Q + K + + GG ++ +++ L G I+V
Sbjct: 122 MPRNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIV 181
Query: 296 GTPGRIID-MVKMGATKLNRVTFLVLDEADRMFDMG 330
TPGR++D M + LV+DEADR+ D+G
Sbjct: 182 ATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVG 217
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding,
RNA binding protein; 2.10A {Saccharomyces cerevisiae}
SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Length = 400
Score = 193 bits (492), Expect = 1e-58
Identities = 54/164 (32%), Positives = 85/164 (51%), Gaps = 5/164 (3%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
++F F L+ + + + P+PIQ +A+P A++GRDI+ AK G+GKT AF+ P L
Sbjct: 21 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 80
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA 286
+ K + LI+ PTREL+ Q + GK +S + GG + D
Sbjct: 81 EKV-KPKL----NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 135
Query: 287 LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L I+VGTPGR++D+ L+ + ++DEAD+M
Sbjct: 136 LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein,
ATPase, RNA binding protein; 3.00A {Methanocaldococcus
jannaschii} SCOP: c.37.1.19 c.37.1.19
Length = 367
Score = 191 bits (488), Expect = 1e-58
Identities = 60/164 (36%), Positives = 91/164 (55%), Gaps = 8/164 (4%)
Query: 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGR-DIIGVAKTGSGKTGAFIWPML 226
+F + ++ A+R + PT IQ + +P L+ +I+ A+TGSGKT +F P++
Sbjct: 7 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 66
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA 286
+ +G +IL PTREL+ Q+ +E + NL + YGG + + Q KA
Sbjct: 67 ELV------NENNGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 120
Query: 287 LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L+ A IVVGTPGRI+D + G L V + +LDEAD M +MG
Sbjct: 121 LK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG 163
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX,
structural genomics, helic binding, HOST-virus
interaction, hydrolase; 1.85A {Homo sapiens} PDB:
2g9n_A*
Length = 237
Score = 187 bits (476), Expect = 3e-58
Identities = 53/166 (31%), Positives = 81/166 (48%), Gaps = 6/166 (3%)
Query: 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPM 225
V +F E L++ + + P+ IQ +A+ + G D+I A++G+GKT F +
Sbjct: 29 VDNFDDMNLKESLLRGIYAYGFEKPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISI 88
Query: 226 LVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK 285
L + + + E L+LAPTREL+QQI G + C GG + ++ +
Sbjct: 89 LQQL-EIEFKE----TQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQ 143
Query: 286 ALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L+ IVVGTPGR+ DM+ + VLDEAD M G
Sbjct: 144 KLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSRG 189
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein,
translation; 2.50A {Saccharomyces cerevisiae} SCOP:
c.37.1.19 PDB: 2vso_A* 2vsx_A*
Length = 394
Score = 191 bits (487), Expect = 5e-58
Identities = 55/171 (32%), Positives = 85/171 (49%), Gaps = 6/171 (3%)
Query: 160 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTG 219
+ V F DE L++ + + P+ IQ +A+ + G D++ A++G+GKTG
Sbjct: 14 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTG 73
Query: 220 AFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGS 279
F L I D P L+LAPTREL+ QI ++ V C GG S
Sbjct: 74 TFSIAALQRI-DTSV----KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTS 128
Query: 280 KWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
+ ++ L A+IVVGTPGR+ D ++ + +++ +LDEAD M G
Sbjct: 129 FVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 178
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural
genomics, structural genomics consortium, SGC,
hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Length = 230
Score = 184 bits (469), Expect = 2e-57
Identities = 48/165 (29%), Positives = 77/165 (46%), Gaps = 7/165 (4%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
+ F +++ LR + P+P+Q +A+P G D+I AK+G+GKT F L
Sbjct: 24 ADFESLLLSRPVLEGLRAAGFERPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIAL 83
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSK 285
+ + L LILAPTRE++ QI++ G L GG
Sbjct: 84 DSL-VLENLS----TQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKT 138
Query: 286 ALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L+ I VG+PGRI ++++ + +LDEAD++ + G
Sbjct: 139 RLK-KCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 182
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis,
cell cycle, nucleus, phosph RNA-binding, ATP-binding,
helicase, hydrolase; 3.50A {Homo sapiens}
Length = 414
Score = 188 bits (481), Expect = 6e-57
Identities = 54/166 (32%), Positives = 79/166 (47%), Gaps = 6/166 (3%)
Query: 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPM 225
V SF E L++ + + P+ IQ +A+ + G D+I A++G+GKT F +
Sbjct: 39 VDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISI 98
Query: 226 LVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSK 285
L I + L+LAPTREL+QQI G S C GG + + +
Sbjct: 99 LQQI-ELDLKA----TQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQ 153
Query: 286 ALEL-GAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L++ I+VGTPGR+ DM+ + VLDEAD M G
Sbjct: 154 KLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 199
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD;
ATP-binding, hydrolase, nucleotide-binding, RNA binding
protein, structural genomics; 1.90A {Sulfolobus
tokodaii}
Length = 337
Score = 184 bits (470), Expect = 3e-56
Identities = 52/156 (33%), Positives = 89/156 (57%), Gaps = 12/156 (7%)
Query: 175 DEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKE 234
+E + +A+R+ + + T +Q++ +P L G++++ AKTGSGKT A+ P+L +
Sbjct: 2 NEKIEQAIREMGFKNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPIL-----EL- 55
Query: 235 LEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIV 294
G L++ PTREL++Q+ + + G+ + V YGG Q + A+IV
Sbjct: 56 -----GMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVYGGMPYKAQINRVR-NADIV 109
Query: 295 VGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
V TPGR++D+ G L+ +++DEAD MF+MG
Sbjct: 110 VATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMG 145
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA
processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP:
c.37.1.19
Length = 220
Score = 180 bits (459), Expect = 6e-56
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 10/168 (5%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
S F F L++A+ C + P+ +Q + +P A+ G D++ AK+G GKT F+ L
Sbjct: 14 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 73
Query: 227 VHIMDQKELEPGDG-PMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQS 284
Q+ LEP G L++ TREL+ QI E +RF K N+ V +GG S
Sbjct: 74 -----QQ-LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 127
Query: 285 KALELGAE-IVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD-MG 330
+ L+ IVVGTPGRI+ + + + L + +LDE D+M + +
Sbjct: 128 EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 175
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA
dependent ATPase, RNA helicase; HET: ANP; 1.91A
{Saccharomyces cerevisiae S288C}
Length = 579
Score = 187 bits (477), Expect = 5e-55
Identities = 54/181 (29%), Positives = 87/181 (48%), Gaps = 9/181 (4%)
Query: 158 SGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGS 215
+ S D+ + KA+ + E+ TP+Q + + LS D+I AKTG+
Sbjct: 12 DNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTPVQQKTIKPILSSEDHDVIARAKTGT 71
Query: 216 GKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKG----YNLSV 271
GKT AF+ P+ + + + +I+APTR+L+ QI E K+ +
Sbjct: 72 GKTFAFLIPIF-QHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC 130
Query: 272 VCCYGGGSKWDQSKALE-LGAEIVVGTPGRIIDMVKMGATKL-NRVTFLVLDEADRMFDM 329
V GG + L IV+ TPGR+ID+++ + K V + VLDEADR+ ++
Sbjct: 131 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI 190
Query: 330 G 330
G
Sbjct: 191 G 191
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA
helicase, DEAD-BOX, ATP-binding, HE hydrolase,
mitochondrion; HET: ANP; 1.90A {Saccharomyces
cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A*
Length = 563
Score = 186 bits (473), Expect = 1e-54
Identities = 57/206 (27%), Positives = 94/206 (45%), Gaps = 9/206 (4%)
Query: 133 QPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTP 192
+ ED + + + + S D+ + KA+ + E+ TP
Sbjct: 38 RSREDDDEVHFDKTTFSKLIHVPKEDNSKEVTLDSLLEEGVLDKEIHKAITRMEFPGLTP 97
Query: 193 IQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTR 250
+Q + + LS D+I AKTG+GKT AF+ P+ + + + +I+APTR
Sbjct: 98 VQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIF-QHLINTKFDSQYMVKAVIVAPTR 156
Query: 251 ELSQQIYNEAKRFGKGY----NLSVVCCYGGGSKWDQSKALE-LGAEIVVGTPGRIIDMV 305
+L+ QI E K+ + V GG + L IV+ TPGR+ID++
Sbjct: 157 DLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVL 216
Query: 306 KMGATKLNR-VTFLVLDEADRMFDMG 330
+ + K R V + VLDEADR+ ++G
Sbjct: 217 EKYSNKFFRFVDYKVLDEADRLLEIG 242
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling,
archaea, isomeras; 2.35A {Thermotoga maritima} PDB:
3p4y_A 3p4x_A*
Length = 414
Score = 181 bits (460), Expect = 5e-54
Identities = 27/159 (16%), Positives = 48/159 (30%), Gaps = 15/159 (9%)
Query: 176 EVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKEL 235
E +K T Q + G+ VA TG GKT + L
Sbjct: 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLAR----- 62
Query: 236 EPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALEL----GA 291
G ++ PT L +Q ++ + + Y K ++ K +
Sbjct: 63 ---KGKKSALVFPTVTLVKQTLERLQKLAD-EKVKIFGFYSSMKKEEKEKFEKSFEEDDY 118
Query: 292 EIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
I+V + + R F+ +D+ D +
Sbjct: 119 HILVFSTQFVSK--NREKLSQKRFDFVFVDDVDAVLKAS 155
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene
regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19
c.37.1.19 PDB: 1xtj_A* 1xtk_A
Length = 391
Score = 178 bits (455), Expect = 2e-53
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 10/168 (5%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
S F F L++A+ C + P+ +Q + +P A+ G D++ AK+G GKT F+ L
Sbjct: 8 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 67
Query: 227 VHIMDQKELEPGDG-PMGLILAPTRELSQQIYNEAKRFGKG-YNLSVVCCYGGGSKWDQS 284
Q+ LEP G L++ TREL+ QI E +RF K N+ V +GG S
Sbjct: 68 -----QQ-LEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDE 121
Query: 285 KALELGAE-IVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD-MG 330
+ L+ IVVGTPGRI+ + + + L + +LDE D+M + +
Sbjct: 122 EVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 169
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase,
mRNA-export, nuclear pore, hydrolase-RNA complex; HET:
ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A*
3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A
3pev_A* 3peu_A*
Length = 395
Score = 175 bits (446), Expect = 5e-52
Identities = 48/168 (28%), Positives = 85/168 (50%), Gaps = 11/168 (6%)
Query: 164 YPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTGAF 221
SF G L+K + ++ P+ IQ +A+P L R++I +++G+GKT AF
Sbjct: 2 AMAKSFDELGLAPELLKGIYAMKFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAF 61
Query: 222 IWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281
ML + + ++ P + LAP+REL++Q + GK ++
Sbjct: 62 SLTMLTRV-NPEDASP----QAICLAPSRELARQTLEVVQEMGKFTKITSQLIVPDS--- 113
Query: 282 DQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329
K ++ A+++VGTPG ++D+++ +L ++ VLDEAD M D
Sbjct: 114 -FEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ 160
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation
termination, binding, hydrolase, membrane, mRNA
transport; 2.80A {Schizosaccharomyces pombe}
Length = 508
Score = 172 bits (439), Expect = 5e-50
Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 13/140 (9%)
Query: 193 IQAQAVPAALSG--RDIIGVAKTGSGKTGAFIWPMLVHI-MDQKELEPGDGPMGLILAPT 249
IQ +A+P LS R++IG +++G+GKT AF ML + + P + LAP+
Sbjct: 145 IQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPK------PQAICLAPS 198
Query: 250 RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA 309
REL++QI + GK V +G K ++ A+IV+GTPG ++D++K
Sbjct: 199 RELARQIMDVVTEMGK--YTEVKTAFGIKD--SVPKGAKIDAQIVIGTPGTVMDLMKRRQ 254
Query: 310 TKLNRVTFLVLDEADRMFDM 329
+ VLDEAD M D
Sbjct: 255 LDARDIKVFVLDEADNMLDQ 274
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA
dependent ATPase, mRNA export, nucleocytoplasmic
transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens}
PDB: 3ews_A* 3g0h_A* 3fhc_B
Length = 412
Score = 168 bits (427), Expect = 4e-49
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 13/174 (7%)
Query: 162 PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTG 219
P Y V SF L++ + + P+ IQ A+P L+ +++I +++G+GKT
Sbjct: 20 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 79
Query: 220 AFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGG 278
AF+ ML + + P L L+PT EL+ Q ++ GK Y L + G
Sbjct: 80 AFVLAMLSQV-EPANKY----PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 134
Query: 279 SKWDQSKALELGAEIVVGTPGRIIDMV-KMGATKLNRVTFLVLDEADRMFD-MG 330
+ ++ +IV+GTPG ++D K+ ++ VLDEAD M G
Sbjct: 135 K---LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 2.51A {Homo
sapiens}
Length = 300
Score = 162 bits (411), Expect = 6e-48
Identities = 50/174 (28%), Positives = 82/174 (47%), Gaps = 13/174 (7%)
Query: 162 PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG--RDIIGVAKTGSGKTG 219
P Y V SF L++ + + P+ IQ A+P L+ +++I +++G+GKT
Sbjct: 87 PLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTA 146
Query: 220 AFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGG 278
AF+ ML + + P L L+PT EL+ Q ++ GK Y L + G
Sbjct: 147 AFVLAMLSQV-EPANKY----PQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGN 201
Query: 279 SKWDQSKALELGAEIVVGTPGRIIDMV-KMGATKLNRVTFLVLDEADRMFD-MG 330
+ ++ +IV+GTPG ++D K+ ++ VLDEAD M G
Sbjct: 202 K---LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 252
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore
complex, nucleocytoplasmic trans mRNA export, protein
interaction, beta-propeller; HET: ADP; 3.19A {Homo
sapiens}
Length = 479
Score = 164 bits (417), Expect = 5e-47
Identities = 56/253 (22%), Positives = 98/253 (38%), Gaps = 16/253 (6%)
Query: 86 QDNDSDVDLEYDEDGNPIAPKKSKYIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQE 145
D + +K K + + + E+
Sbjct: 8 LAVDEQEAAAESLSNLHLKEEKIKPDTNGAVVKTNANAEKTDEEEKEDRAAQSLLNKLIR 67
Query: 146 AQELRAKSGITVSGADPPYP---VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAAL 202
+ + + + V DP P V SF L++ + + P+ IQ A+P L
Sbjct: 68 SNLVDNTNQVEVLQRDPNSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLML 127
Query: 203 SG--RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA 260
+ +++I +++G+GKT AF+ ML + + P L L+PT EL+ Q
Sbjct: 128 AEPPQNLIAQSQSGTGKTAAFVLAMLSQV-EPANKY----PQCLCLSPTYELALQTGKVI 182
Query: 261 KRFGKGY-NLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMV-KMGATKLNRVTFL 318
++ GK Y L + G + ++ +IV+GTPG ++D K+ ++
Sbjct: 183 EQMGKFYPELKLAYAVRGNK---LERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVF 239
Query: 319 VLDEADRMFD-MG 330
VLDEAD M G
Sbjct: 240 VLDEADVMIATQG 252
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA
repair, DNA recombina hydrolase; 2.90A {Pyrococcus
furiosus} SCOP: c.37.1.19 c.37.1.19
Length = 494
Score = 78.7 bits (193), Expect = 2e-16
Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 9/141 (6%)
Query: 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249
P Q + + V TG GKT I M+ L G + L+LAPT
Sbjct: 10 PRIYQEVIYAKCK-ETNCLIVLPTGLGKT--LIAMMIAEYR----LTKYGGKV-LMLAPT 61
Query: 250 RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA 309
+ L Q +R + G ++ A+++V TP I + + G
Sbjct: 62 KPLVLQHAESFRRLF-NLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGR 120
Query: 310 TKLNRVTFLVLDEADRMFDMG 330
L V+ +V DEA R
Sbjct: 121 ISLEDVSLIVFDEAHRAVGNY 141
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 69.9 bits (170), Expect = 2e-13
Identities = 61/352 (17%), Positives = 107/352 (30%), Gaps = 99/352 (28%)
Query: 23 DTDSDE----------DPLDAFMKGID-KEVKQEAKGVKTKKIEEVKGIRDDIDHEDDEE 71
D ++ E DAF+ D K+V+ K + +K EE+ D I D
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK--EEI----DHIIMSKDAV 61
Query: 72 SYYRYM----EENPNAGLQD-NDSDVDLEYDEDGNPIAPKKSKYIDPLPPIDHSTIVYEE 126
S + +Q + + + Y +PI K++ P T +Y E
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI---KTEQRQPSMM----TRMYIE 114
Query: 127 VEKNFYQ-----PHEDIARLTP----QEA-QELRAKSGITVSGADPPYPVSSFGHFGF-D 175
Y +++RL P ++A ELR + + G G
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI-----------DGVLGSGK 163
Query: 176 EVLMKALRKCEYTSPTPIQAQAVPAALSGRDI--IGVAKTGSGKTGAFIWPM--LVHIMD 231
+ AL C + V + + I + + S + + L++ +D
Sbjct: 164 TWV--ALDVC--------LSYKVQCKMDFK-IFWLNLKNCNS--PETVLEMLQKLLYQID 210
Query: 232 QKELEPGDGPMGLILAPTRELSQQIYNEAKRF--GKGYN-----LSVVCCYGGGSKWDQS 284
D + + I E +R K Y L V +
Sbjct: 211 PNWTSRSDHS-----SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV--------QNAK 257
Query: 285 --KALELGAEIVVGTPGR---IIDMVKMGATKLNRVTF----LVLDEADRMF 327
A L +I++ T R + D + T + L DE +
Sbjct: 258 AWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLL 307
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H
RNA-binding helicase, innate immunity, IFIH1, S
genomics; 1.60A {Homo sapiens}
Length = 216
Score = 65.2 bits (159), Expect = 1e-12
Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 16/140 (11%)
Query: 194 QAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL- 252
Q + AL G++II TGSGKT + + K+ + + ++L L
Sbjct: 38 QMEVAQPALEGKNIIICLPTGSGKT--RVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLV 95
Query: 253 SQQIYNEAKRFG-KGYNLSVVCCYGGGSKWDQSKALEL--GAEIVVGTPGRIIDMV---- 305
Q E + F K Y + + G + E+ +I++ T + + +
Sbjct: 96 EQLFRKEFQPFLKKWYRVIGLS----GDTQLKISFPEVVKSCDIIISTAQILENSLLNLE 151
Query: 306 --KMGATKLNRVTFLVLDEA 323
+ +L+ + +++DE
Sbjct: 152 NGEDAGVQLSDFSLIIIDEC 171
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding,
hydrolase, nucleotide- binding; 2.00A {Pyrococcus
furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Length = 720
Score = 65.3 bits (159), Expect = 7e-12
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 12/152 (7%)
Query: 172 FGFDEVLMKALRKCEYTSPTPIQAQAVPAAL-SGRDIIGVAKTGSGKTGAFIWPMLVHIM 230
DE + L++ S P QA+A+ + + G++ + T SGKT M+ I+
Sbjct: 6 LRVDERIKSTLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRIL 65
Query: 231 DQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELG 290
G + + P + L+++ + E + + K L V G +D
Sbjct: 66 T-------QGGKAVYIVPLKALAEEKFQEFQDWEK-IGLRVAMATGD---YDSKDEWLGK 114
Query: 291 AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDE 322
+I++ T + +++ G++ + V LV DE
Sbjct: 115 YDIIIATAEKFDSLLRHGSSWIKDVKILVADE 146
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal
helicase, DNA repair,, DNA binding protein/DNA complex;
3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2
c.37.1.19 c.37.1.19 PDB: 2p6u_A
Length = 702
Score = 61.7 bits (150), Expect = 1e-10
Identities = 31/150 (20%), Positives = 60/150 (40%), Gaps = 12/150 (8%)
Query: 173 GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQ 232
+ L++ P QA+AV SG++++ T +GKT M+ +
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 233 KELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAE 292
L + P R L+ + Y K++ K L + G ++ +
Sbjct: 69 G--------KSLYVVPLRALAGEKYESFKKWEK-IGLRIGISTGD---YESRDEHLGDCD 116
Query: 293 IVVGTPGRIIDMVKMGATKLNRVTFLVLDE 322
I+V T + +++ A+ + V+ LV+DE
Sbjct: 117 IIVTTSEKADSLIRNRASWIKAVSCLVVDE 146
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET:
ANP; 2.14A {Mus musculus}
Length = 555
Score = 58.8 bits (141), Expect = 8e-10
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 4/134 (2%)
Query: 194 QAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELS 253
Q + A G++ I A TG GKT F+ ++ +K G + A +
Sbjct: 9 QLELALPAKKGKNTIICAPTGCGKT--FVSLLICEHHLKKFPCGQKG-KVVFFANQIPVY 65
Query: 254 QQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA-TKL 312
+Q R+ + ++ G S + + +I++ TP +++ + GA L
Sbjct: 66 EQQATVFSRYFERLGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSL 125
Query: 313 NRVTFLVLDEADRM 326
+ T ++ DE
Sbjct: 126 SVFTLMIFDECHNT 139
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Length = 556
Score = 58.8 bits (141), Expect = 9e-10
Identities = 30/140 (21%), Positives = 57/140 (40%), Gaps = 8/140 (5%)
Query: 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249
Q + A++G++ + A TGSGKT F+ ++ Q + + LA
Sbjct: 8 ARSYQIELAQPAINGKNALICAPTGSGKT--FVSILICEHHFQNMPAGRKAKV-VFLATK 64
Query: 250 REL-SQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS-KALELGAEIVVGTPGRIIDMVKM 307
+ QQ F + V G + + S + + ++I+V TP +++ +
Sbjct: 65 VPVYEQQKNVFKHHFER--QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFED 122
Query: 308 GA-TKLNRVTFLVLDEADRM 326
G T L+ T ++ DE
Sbjct: 123 GTLTSLSIFTLMIFDECHNT 142
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate
immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Length = 696
Score = 58.8 bits (141), Expect = 9e-10
Identities = 26/138 (18%), Positives = 56/138 (40%), Gaps = 4/138 (2%)
Query: 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249
P Q + A+ G++ I A TG GKT + H+ + + G + A
Sbjct: 14 PRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKG---KVVFFANQ 70
Query: 250 RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA 309
+ +Q + ++ + + V G ++ + + +I++ TP +++ +K G
Sbjct: 71 IPVYEQNKSVFSKYFERHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGT 130
Query: 310 -TKLNRVTFLVLDEADRM 326
L+ T ++ DE
Sbjct: 131 IPSLSIFTLMIFDECHNT 148
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.40A {Anas platyrhynchos}
Length = 797
Score = 58.1 bits (139), Expect = 2e-09
Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 12/264 (4%)
Query: 67 EDDEESYYRYMEENPNAGLQDNDSDVDLEYDEDGNPIAPKKSKYIDPLPPIDHSTIVYEE 126
+ + E + E A + D++ P + + + + E+
Sbjct: 134 DRECEEIQQISENRSKAAGITKLIECLCRSDKEHWPKSLQLALDTTGYYRASELWDIRED 193
Query: 127 VEKNFYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCE 186
K+ D A E ++ +T S P S E + K E
Sbjct: 194 NAKDVDSEMTD--------ASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYE 245
Query: 187 YTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246
Q + A++G++ + A TGSGKT F+ ++ Q + + L
Sbjct: 246 TKKARSYQIELAQPAINGKNALICAPTGSGKT--FVSILICEHHFQNMPAGRKAKV-VFL 302
Query: 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVK 306
A + +Q N K + SV G + + ++I+V TP +++ +
Sbjct: 303 ATKVPVYEQQKNVFKHHFERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFE 362
Query: 307 MGA-TKLNRVTFLVLDEADRMFDM 329
G T L+ T ++ DE
Sbjct: 363 DGTLTSLSIFTLMIFDECHNTTGN 386
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin
nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Length = 715
Score = 55.9 bits (135), Expect = 8e-09
Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 15/161 (9%)
Query: 163 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAAL-SGRDIIGVAKTGSGKTGAF 221
P+ +++ ++K P Q +AV L G ++ + TGSGKT
Sbjct: 7 WMPIEDLK---LPSNVIEIIKKRGIKKLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIA 63
Query: 222 IWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKW 281
++ ++ +G + + P R L+ + Y K + V G
Sbjct: 64 EMGIISFLLK-------NGGKAIYVTPLRALTNEKYLTFKDWEL-IGFKVAMTSGDY--- 112
Query: 282 DQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDE 322
D A +I++ T ++ + + LN V + VLDE
Sbjct: 113 DTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDE 153
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 54.7 bits (131), Expect = 2e-08
Identities = 56/308 (18%), Positives = 97/308 (31%), Gaps = 97/308 (31%)
Query: 52 KKIEEVKGIRDDID-HEDDEE--SYYRYMEENPNA-----------GLQDNDSDVDLEYD 97
K + + + + D H D S + NP +++N S + E
Sbjct: 1637 KTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 98 EDGNPIAPKKSKYIDPLPPIDHSTIVYEEVEK-----NFYQPHEDIARLTPQEA--QELR 150
DG K K I+ ++ + + F QP A ++A ++L+
Sbjct: 1697 VDGKLKTEKIFKEINE----HSTSYTFRSEKGLLSATQFTQP----ALTLMEKAAFEDLK 1748
Query: 151 AKSGITVSGADPPYPVSSF-GH-FGFDEVLMKALRKCEYTSPTPIQAQAVPA-ALSGRDI 207
+K G+ + A +F GH G EY A A A +S +
Sbjct: 1749 SK-GLIPADA-------TFAGHSLG------------EYA------ALASLADVMSIESL 1782
Query: 208 IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI-LAPTR-------ELSQQIYNE 259
+ V G T P E G G+I + P R E Q +
Sbjct: 1783 VEVVFY-RGMTMQVAVP---------RDELGRSNYGMIAINPGRVAASFSQEALQYVVER 1832
Query: 260 AKRFGKG------YNLS---VVCCYGGGSKWDQSKALELGAEIV--VGTPGRIIDMVKMG 308
+ YN+ V G +AL+ ++ + ID++++
Sbjct: 1833 VGKRTGWLVEIVNYNVENQQYVA---AGDL----RALDTVTNVLNFIKLQK--IDIIELQ 1883
Query: 309 AT-KLNRV 315
+ L V
Sbjct: 1884 KSLSLEEV 1891
Score = 31.9 bits (72), Expect = 0.32
Identities = 23/106 (21%), Positives = 37/106 (34%), Gaps = 26/106 (24%)
Query: 236 EPGDGPMGLILAPTRELSQQIYNEAKR-FGKGYNLSV----------VCCYGGGSKWDQS 284
E G MG+ L T + +Q ++N A F Y S+ + + GG K
Sbjct: 1628 EQG---MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK---- 1680
Query: 285 KALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADR--MFD 328
G I I + + G K ++ F ++E F
Sbjct: 1681 -----GKRIRENYSAMIFETIVDGKLKTEKI-FKEINEHSTSYTFR 1720
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein;
HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19
c.37.1.19 PDB: 2fzl_A*
Length = 472
Score = 54.1 bits (130), Expect = 2e-08
Identities = 38/138 (27%), Positives = 50/138 (36%), Gaps = 30/138 (21%)
Query: 188 TSPTPIQAQAVPAALS-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLIL 246
S Q +A+ L R I V TGSGKT V + EL LI+
Sbjct: 92 ISLRDYQEKALERWLVDKRGCI-VLPTGSGKT-------HVAMAAINEL----STPTLIV 139
Query: 247 APTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVK 306
PT L++Q FG+ V + G K + + V T D
Sbjct: 140 VPTLALAEQWKERLGIFGE----EYVGEFSGRIKELKP--------LTVST----YDSAY 183
Query: 307 MGATKL-NRVTFLVLDEA 323
+ A KL NR L+ DE
Sbjct: 184 VNAEKLGNRFMLLIFDEV 201
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2
RNA helicase, ATP and dsRNA binding antiviral signalling
pathway; 3.70A {Anas platyrhynchos}
Length = 936
Score = 53.0 bits (126), Expect = 7e-08
Identities = 39/186 (20%), Positives = 71/186 (38%), Gaps = 10/186 (5%)
Query: 145 EAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSG 204
+A E ++ +T S P S E + K E Q + A++G
Sbjct: 204 DASEDCLEASMTYSEEAEPDDNLSENLGSAAEGIGKPPPVYETKKARSYQIELAQPAING 263
Query: 205 RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFG 264
++ + A TGSGKT F+ ++ Q + + LA + +Q N K
Sbjct: 264 KNALICAPTGSGKT--FVSILICEHHFQNMPAGRKAKV-VFLATKVPVYEQQKNVFKHH- 319
Query: 265 KGYNLSVVCCYG--GGSKWDQSKALEL-GAEIVVGTPGRIIDMVKMGA-TKLNRVTFLVL 320
+ G G + + S + ++I+V TP +++ + G T L+ T ++
Sbjct: 320 --FERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIF 377
Query: 321 DEADRM 326
DE
Sbjct: 378 DECHNT 383
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold,
winged-helix-turn-helix, antiparallel-coiled-COI domain,
ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces
cerevisiae}
Length = 1108
Score = 49.5 bits (117), Expect = 9e-07
Identities = 51/310 (16%), Positives = 93/310 (30%), Gaps = 45/310 (14%)
Query: 29 DPLDAFMKGID-----KEVKQEAKGVKTKKIEEVKGIRDDIDHEDDEESYYRYMEENPNA 83
DP FM D +E E + + D DH D++ E
Sbjct: 30 DPFTEFMDSTDLFDVFEETPVELPTDSNGEKNADTNVGDTPDHTQDKKH----GLEEEKE 85
Query: 84 GLQDNDSDVDLEYDEDGNPIAPKKSKYIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTP 143
++N+S+ K +P + S E + + + L
Sbjct: 86 EHEENNSENKKIKSNKSKTEDKNKK---VVVPVLADSFEQEASREVDASKGLTNSETLQV 142
Query: 144 QEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPI-----QAQAV 198
++ ++R + A PP +D + ++ P Q A+
Sbjct: 143 EQDGKVRLSHQVRHQVALPP---------NYDYTPIAEHKRVNEARTYPFTLDPFQDTAI 193
Query: 199 PAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYN 258
G ++ A T +GKT + + + + +P + LS Q Y
Sbjct: 194 SCIDRGESVLVSAHTSAGKT--VVAEYAIAQSLKN------KQRVIYTSPIKALSNQKYR 245
Query: 259 EAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFL 318
E L G + A +V T + M+ G+ + V ++
Sbjct: 246 ELLAEFGDVGLMT-----GDITINPD------AGCLVMTTEILRSMLYRGSEVMREVAWV 294
Query: 319 VLDEADRMFD 328
+ DE M D
Sbjct: 295 IFDEVHYMRD 304
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition
domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus
fulgidus} SCOP: c.37.1.19
Length = 237
Score = 45.1 bits (107), Expect = 1e-05
Identities = 34/132 (25%), Positives = 48/132 (36%), Gaps = 30/132 (22%)
Query: 194 QAQAVPAALS-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252
Q +A+ L R I V TGSGKT + ++ + LI+ PT L
Sbjct: 98 QEKALERWLVDKRGCI-VLPTGSGKT--HVAMAAINELSTPT---------LIVVPTLAL 145
Query: 253 SQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKL 312
++Q FG+ V + G K + V T D + A KL
Sbjct: 146 AEQWKERLGIFGE----EYVGEFSGRIKEL--------KPLTVST----YDSAYVNAEKL 189
Query: 313 -NRVTFLVLDEA 323
NR L+ DE
Sbjct: 190 GNRFMLLIFDEV 201
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA
compl protease/ntpase/helicase, hydrolase; 1.95A
{Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A*
1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A*
3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A
Length = 666
Score = 43.8 bits (103), Expect = 6e-05
Identities = 24/153 (15%), Positives = 45/153 (29%), Gaps = 26/153 (16%)
Query: 175 DEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKE 234
D V ++++ + + S + A TGSGK+ + Q
Sbjct: 203 DFVPVESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTK----VPAAYAAQ-- 256
Query: 235 LEPGDGPMGLILAPTRELSQQIYNE-AKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEI 293
G L+L P+ + +K G N+ + + GA +
Sbjct: 257 -----GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRT-----------GVRTITTGAPV 300
Query: 294 VVGTPGRIIDMVKMGATKLNRVTFLVLDEADRM 326
T G+ + G ++ DE
Sbjct: 301 TYSTYGKFLA---DGGCSGGAYDIIICDECHST 330
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase,
tramp, exosome, DEAD, nucleotide-binding; HET: ADP;
2.90A {Saccharomyces cerevisiae}
Length = 1010
Score = 39.8 bits (92), Expect = 0.001
Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 19/137 (13%)
Query: 192 PIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251
P Q A+ G ++ A T +GKT + + + + +P +
Sbjct: 89 PFQDTAISCIDRGESVLVSAHTSAGKT--VVAEYAIAQSLKN------KQRVIYTSPIKA 140
Query: 252 LSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATK 311
LS Q Y E L G + A +V T + M+ G+
Sbjct: 141 LSNQKYRELLAEFGDVGLMT-----GDITINPD------AGCLVMTTEILRSMLYRGSEV 189
Query: 312 LNRVTFLVLDEADRMFD 328
+ V +++ DE M D
Sbjct: 190 MREVAWVIFDEVHYMRD 206
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase,
nucleotide excision repair,; 2.20A {Thermoplasma
acidophilum} PDB: 2vsf_A*
Length = 620
Score = 37.8 bits (88), Expect = 0.005
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 19/95 (20%)
Query: 192 PIQ---AQAVPAAL-SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247
Q + ++L + + TGSGKT + L + ++K L L
Sbjct: 6 QYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERK-------LKVLYLV 58
Query: 248 PTRELSQQIYNEAKRFGKGYNLSVV--------CC 274
T +Q+ E + + + C
Sbjct: 59 RTNSQEEQVIKELRSLSSTMKIRAIPMQGRVNMCI 93
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA
binding protein; HET: DNA; 2.00A {Enterobacteria phage
T4} SCOP: c.37.1.23
Length = 282
Score = 33.5 bits (75), Expect = 0.076
Identities = 31/139 (22%), Positives = 56/139 (40%), Gaps = 13/139 (9%)
Query: 188 TSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILA 247
P Q AV L R I T +G++ ++ ++ + LE +G + LI+
Sbjct: 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRS------LIQALLARYYLENYEGKI-LIIV 164
Query: 248 PTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKM 307
PT L+ Q+ ++ + + + GG SK + A +VVGT +VK
Sbjct: 165 PTTALTTQMADDFVDYRLFSHAMIKKIGGGASK---DDKYKNDAPVVVGTWQ---TVVKQ 218
Query: 308 GATKLNRVTFLVLDEADRM 326
++ ++ DE
Sbjct: 219 PKEWFSQFGMMMNDECHLA 237
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic
subunit]; helicase, flavivirus, DEAD-BOX, ATPase,
rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP:
c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Length = 440
Score = 33.7 bits (77), Expect = 0.081
Identities = 22/121 (18%), Positives = 41/121 (33%), Gaps = 19/121 (15%)
Query: 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263
G + G+GKT L I+ + L+LAPTR + ++ + F
Sbjct: 8 GMTTVLDFHPGAGKTRR----FLPQILAECARRRL---RTLVLAPTRVVLSEM---KEAF 57
Query: 264 GKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEA 323
L V S + + I + + + T++ +++DEA
Sbjct: 58 HG---LDVKFHTQAFSAHGSGREV-----IDAMCHATLTYRM-LEPTRVVNWEVIIMDEA 108
Query: 324 D 324
Sbjct: 109 H 109
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea,
helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16
c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Length = 1054
Score = 33.1 bits (76), Expect = 0.14
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 18/129 (13%)
Query: 202 LSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE-- 259
L A TG GKT +F M + + + G ++ PT L Q
Sbjct: 69 LRKESFAATAPTGVGKT-SFGLAMSLFLALK-------GKRCYVIFPTSLLVIQAAETIR 120
Query: 260 --AKRFGKGYNLSVVCCYGGGSKWDQSKALELGAE--IVVGTPGRIIDMVKMGATKLNRV 315
A++ G G + +G K ++ ++ IV+ T + + L
Sbjct: 121 KYAEKAGVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHF 176
Query: 316 TFLVLDEAD 324
F+ +D+ D
Sbjct: 177 DFIFVDDVD 185
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding,
viral nucleoprotein, endoplasmic reticulum, helicase,
hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A*
2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A
2bhr_A
Length = 451
Score = 32.9 bits (75), Expect = 0.15
Identities = 23/133 (17%), Positives = 42/133 (31%), Gaps = 21/133 (15%)
Query: 192 PIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRE 251
P R I G+GKT + P +V LILAPTR
Sbjct: 7 PDYEVDEDIFRKKRLTIMDLHPGAGKTKRIL-PSIV------REALLRRLRTLILAPTRV 59
Query: 252 LSQQIYNE-AKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT 310
++ ++ + +V + G + + + + +T
Sbjct: 60 VAAEMEEALRGLPIRYQTPAVKSDHTGREI------------VDLMCHATFTTRL-LSST 106
Query: 311 KLNRVTFLVLDEA 323
++ +V+DEA
Sbjct: 107 RVPNYNLIVMDEA 119
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus,
hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Length = 677
Score = 32.2 bits (72), Expect = 0.22
Identities = 19/92 (20%), Positives = 30/92 (32%), Gaps = 15/92 (16%)
Query: 179 MKALRK-CEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEP 237
LRK + P A A+ + I T SGKT I
Sbjct: 131 KDDLRKISDLRIPPNWYPDAR--AMQRKIIFHSGPTNSGKTYHAIQKYFSA--------- 179
Query: 238 GDGPMGLILAPTRELSQQIYNEAKRFGKGYNL 269
G+ P + L+ +I+ ++ G +L
Sbjct: 180 ---KSGVYCGPLKLLAHEIFEKSNAAGVPCDL 208
>1u07_A TONB protein; beta-hairpin, protein transport; 1.13A {Escherichia
coli} SCOP: d.212.1.2 PDB: 2gsk_B* 1ihr_A 1qxx_A
Length = 90
Score = 29.6 bits (67), Expect = 0.31
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVP 199
+S+ F+ + A+R+ Y P V
Sbjct: 45 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVN 78
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 31.4 bits (71), Expect = 0.44
Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 8/68 (11%)
Query: 62 DDIDHEDDEESYYRYMEENPNAGLQDNDSDVDLEYDEDGNPIAPKKSKYIDPL-----PP 116
DD D E ++ + + D +GN I+ + I
Sbjct: 464 DDFLEPDAVELCLDEFRKDLSLACVYTTNRN---IDREGNLISNGYNWPIYSREKLTSAM 520
Query: 117 IDHSTIVY 124
I H ++
Sbjct: 521 ICHHFRMF 528
Score = 28.8 bits (64), Expect = 2.7
Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 2/71 (2%)
Query: 62 DDIDHEDDEESYYRYMEENPNAGLQDNDSDVDLEYDEDGNPIAPKKSKYIDPLPPIDHST 121
D + +SY + + N L +D + ++ K I+ +P I +
Sbjct: 184 DMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQK--SLINEIPEIITNN 241
Query: 122 IVYEEVEKNFY 132
V +VE+N
Sbjct: 242 QVAGKVEQNKS 252
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch
repair, nucleotide-binding, DNA-binding, polymorphism,
nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens}
PDB: 2wwy_A*
Length = 591
Score = 30.0 bits (68), Expect = 1.3
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 192 PIQAQAVPAALSGRDIIGVAKTGSGK 217
P+Q + + ++G+++ V TG GK
Sbjct: 47 PLQLETINVTMAGKEVFLVMPTGGGK 72
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant
helicase, T4-bacteriophage, recombination, hydrolase;
2.70A {Enterobacteria phage T4}
Length = 510
Score = 29.9 bits (66), Expect = 1.4
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 13/137 (9%)
Query: 190 PTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPT 249
P Q AV L R I T +G++ + + LI+ PT
Sbjct: 114 PHWYQKDAVFEGLVNRRRILNLPTSAGRS-----LIQALLARYYLENYE--GKILIIVPT 166
Query: 250 RELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGA 309
L+ Q+ ++ + + + GG + + A +VVGT +VK
Sbjct: 167 TALTTQMADDFVDYRLFSHAMIKKIGGG---ASKDDKYKNDAPVVVGT---WQTVVKQPK 220
Query: 310 TKLNRVTFLVLDEADRM 326
++ ++ DE
Sbjct: 221 EWFSQFGMMMNDECHLA 237
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix,
helix-turn-helix, ATP binding, Zn(2+) binding,
hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43
c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Length = 523
Score = 29.0 bits (66), Expect = 2.3
Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 13/47 (27%)
Query: 171 HFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGK 217
FG+ R P Q + + LSGRD + V TG GK
Sbjct: 20 TFGYQ-----QFR--------PGQEEIIDTVLSGRDCLVVMPTGGGK 53
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication,
viral replication, nucleotide-binding; 2.10A {Kokobera
virus} PDB: 2v6j_A
Length = 431
Score = 28.6 bits (64), Expect = 2.7
Identities = 17/121 (14%), Positives = 37/121 (30%), Gaps = 21/121 (17%)
Query: 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNE-AKR 262
+ G+GKT L ++ + + +ILAPTR ++ ++Y
Sbjct: 2 RELTVLDLHPGAGKTRRV----LPQLVREAVKKRL---RTVILAPTRVVASEMYEALRGE 54
Query: 263 FGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDE 322
+ +V G + + + ++ ++DE
Sbjct: 55 PIRYMTPAVQSERTGNEI------------VDFMCHSTFTMKL-LQGVRVPNYNLYIMDE 101
Query: 323 A 323
A
Sbjct: 102 A 102
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane,
nucleotide-binding, RNA replication, transmembrane,
viral protein; 1.80A {Japanese encephalitis virus} PDB:
2v8o_A 2qeq_A
Length = 459
Score = 28.6 bits (64), Expect = 2.9
Identities = 21/133 (15%), Positives = 39/133 (29%), Gaps = 24/133 (18%)
Query: 194 QAQAVPAALS-GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTREL 252
+ P L + + GSGKT +L I+ + +LAPTR +
Sbjct: 10 MGRGSPNMLRKRQMTVLDLHPGSGKTRK----ILPQIIKDAIQQRL---RTAVLAPTRVV 62
Query: 253 SQQIYNE--AKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGAT 310
+ ++ + G + V + + M
Sbjct: 63 AAEMAEALRGLPVRYQTSAVQREHQG-------------NEIVDVMCHATLTHRL-MSPN 108
Query: 311 KLNRVTFLVLDEA 323
++ V+DEA
Sbjct: 109 RVPNYNLFVMDEA 121
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport,
CF(0), stator, transport, acetylation, hydrogen ION
transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Length = 214
Score = 27.8 bits (61), Expect = 4.1
Identities = 20/125 (16%), Positives = 48/125 (38%), Gaps = 14/125 (11%)
Query: 36 KGIDKEVKQEAKGVKTKKIEEVKGIRDDIDHEDDEESYYRYMEENPNAGLQDNDSDVDLE 95
+ DK +Q+ ++ K +K I+D ID E +++ + + + +++
Sbjct: 80 EFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALEVT 139
Query: 96 YDEDGNPIAPKKSKYIDPLPPIDHSTIVYEEVEKNFYQPH-------EDIARLTPQEAQE 148
Y E + + + +D I + + + Q H + ++ Q+ +E
Sbjct: 140 YRERLHRVYREVKNRLD-------YHISVQNMMRQKEQEHMINWVEKRVVQSISAQQEKE 192
Query: 149 LRAKS 153
AK
Sbjct: 193 TIAKC 197
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer
aging, hydrolase; HET: FLC; 2.00A {Sulfolobus
acidocaldarius} PDB: 3crw_1*
Length = 551
Score = 28.1 bits (62), Expect = 4.4
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 12/79 (15%)
Query: 195 AQAVPAAL-SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELS 253
V L + + A TGSGKT + L P L + T
Sbjct: 12 KDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV-----------KPKVLFVVRTHNEF 60
Query: 254 QQIYNEAKRFGKGYNLSVV 272
IY + + + N++
Sbjct: 61 YPIYRDLTKIREKRNITFS 79
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.4 bits (60), Expect = 4.7
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 5/59 (8%)
Query: 39 DKEVKQEAKGVKTKKIEEVKGIRDDID--HEDDEESYYRYMEENPNAG---LQDNDSDV 92
K +++ K + E + + D++ ++ E + N A Q D+D+
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDADI 153
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle,
KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Length = 223
Score = 27.4 bits (60), Expect = 6.9
Identities = 10/84 (11%), Positives = 28/84 (33%), Gaps = 22/84 (26%)
Query: 19 NASADTDSDEDPLDAFMKGIDKEVKQEAKGVK------------TKKIEEVKGIRDD--- 63
++S +DPL ++ I + +G T++ +DD
Sbjct: 60 RKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGLVTLLERCTREFVRNPLYKDDVRY 119
Query: 64 -------IDHEDDEESYYRYMEEN 80
+++ D+ + ++ +
Sbjct: 120 LRIWMQYVNYIDEPVELFSFLAHH 143
>1qwz_A NPQTN specific sortase B; beta barrel, transpeptidase, hydrolase;
1.75A {Staphylococcus aureus} SCOP: b.100.1.1 PDB:
1qxa_A 1ng5_A 1qx6_A*
Length = 235
Score = 26.9 bits (59), Expect = 7.9
Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 32/184 (17%)
Query: 43 KQEAKGVKTKKIEEVKGIRDDIDHEDDEESYYRYMEENPN-AG-------------LQDN 88
+ + + +K+++ + + + N + G LQ
Sbjct: 22 EDKQERANYEKLQQKFQMLMSKHQAHVRPQFESLEKINKDIVGWIKLSGTSLNYPVLQGK 81
Query: 89 DSDVDLEYDEDGNPIAPKKSKYID---PLPPIDHSTIVY--------------EEVEKNF 131
+ L D + K S ++D L ++H+TI+Y + ++++F
Sbjct: 82 TNHDYLNLDFEREHR-RKGSIFMDFRNELKNLNHNTILYGHHVGDNTMFDVLEDYLKQSF 140
Query: 132 YQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPT 191
Y+ H+ I +L+ S + D + + L + RK S
Sbjct: 141 YEKHKIIEFDNKYGKYQLQVFSAYKTTTKDNYIRTDFENDQDYQQFLDETKRKSVINSDV 200
Query: 192 PIQA 195
+
Sbjct: 201 NVTV 204
>2k9k_A TONB2; metal transport; NMR {Listonella anguillarum}
Length = 106
Score = 25.8 bits (57), Expect = 8.0
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPA 200
V + F+ M+AL+K +Y P + +A+
Sbjct: 60 VDANPKRMFEREAMQALKKWKY-QPQIVDGKAIEQ 93
>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine,
methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A
{Escherichia coli}
Length = 369
Score = 27.2 bits (61), Expect = 8.3
Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 10/63 (15%)
Query: 78 EENPNAGLQDNDSDVDLEYDEDGNPIAPKKSKYIDPLPPIDHSTIVYEEVEKNFYQPHED 137
+N N L + +E D+D YID P+ ++Y +VE +F QP+
Sbjct: 148 AQNLNVHLIGRATKTKIELDQD----------YIDERLPVAGKEMIYRQVENSFTQPNAA 197
Query: 138 IAR 140
+
Sbjct: 198 MNI 200
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 27.3 bits (61), Expect = 9.9
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 42 VKQEAKGVKTKKIEEVKGIRDDIDHE 67
+ Q A ++ KK+ V +RD+ DHE
Sbjct: 535 ITQIADQMQAKKLPLVVDVRDESDHE 560
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.135 0.393
Gapped
Lambda K H
0.267 0.0530 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,382,546
Number of extensions: 346391
Number of successful extensions: 864
Number of sequences better than 10.0: 1
Number of HSP's gapped: 764
Number of HSP's successfully gapped: 79
Length of query: 330
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 236
Effective length of database: 4,077,219
Effective search space: 962223684
Effective search space used: 962223684
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.2 bits)