RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17644
(330 letters)
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 141 bits (357), Expect = 1e-41
Identities = 60/164 (36%), Positives = 92/164 (56%), Gaps = 8/164 (4%)
Query: 168 SFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGR-DIIGVAKTGSGKTGAFIWPML 226
+F + ++ A+R + PT IQ + +P L+ +I+ A+TGSGKT +F P++
Sbjct: 5 NFNELNLSDNILNAIRNKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLI 64
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA 286
+ + +G +IL PTREL+ Q+ +E + NL + YGG + + Q KA
Sbjct: 65 ELVNEN------NGIEAIILTPTRELAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKA 118
Query: 287 LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
L+ A IVVGTPGRI+D + G L V + +LDEAD M +MG
Sbjct: 119 LK-NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMG 161
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 126 bits (317), Expect = 2e-35
Identities = 67/181 (37%), Positives = 100/181 (55%), Gaps = 6/181 (3%)
Query: 155 ITVSGAD--PPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAK 212
++V+G D + +F D + + Y PTPIQ A+PA L RDI+ A+
Sbjct: 7 VSVTGPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQ 66
Query: 213 TGSGKTGAFIWPMLVHIMD----QKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268
TGSGKT AF+ P++ H++ Q+ P LILAPTREL+ QI +E+++F
Sbjct: 67 TGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNTP 126
Query: 269 LSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFD 328
L YGG Q + +++G ++V TPGR++D ++ L ++VLDEADRM D
Sbjct: 127 LRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD 186
Query: 329 M 329
M
Sbjct: 187 M 187
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 122 bits (307), Expect = 4e-34
Identities = 54/178 (30%), Positives = 88/178 (49%), Gaps = 5/178 (2%)
Query: 153 SGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAK 212
+ + ++ +F G E L++ + + P+ IQ +A+ + GRD+I ++
Sbjct: 3 TKVEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQ 62
Query: 213 TGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVV 272
+G+GKT F +L + Q LILAPTREL+ QI G N+
Sbjct: 63 SGTGKTATFSISVLQCLDIQV-----RETQALILAPTRELAVQIQKGLLALGDYMNVQCH 117
Query: 273 CCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
C GG + + + L+ G +V GTPGR+ DM++ + + + LVLDEAD M + G
Sbjct: 118 ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 175
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 118 bits (297), Expect = 1e-32
Identities = 54/168 (32%), Positives = 83/168 (49%), Gaps = 6/168 (3%)
Query: 163 PYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFI 222
V F DE L++ + + P+ IQ +A+ + G D++ A++G+GKTG F
Sbjct: 6 DKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFS 65
Query: 223 WPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWD 282
L I P L+LAPTREL+ QI ++ V C GG S +
Sbjct: 66 IAALQRIDTSV-----KAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVE 120
Query: 283 QSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
++ L A+IVVGTPGR+ D ++ + +++ +LDEAD M G
Sbjct: 121 DAEGLR-DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSG 167
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 118 bits (296), Expect = 2e-32
Identities = 54/172 (31%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
Query: 160 ADPPYPVSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTG 219
++ V SF E L++ + + P+ IQ +A+ + G D+I A++G+GKT
Sbjct: 5 SNWNEIVDSFDDMNLSESLLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTA 64
Query: 220 AFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGS 279
F +L I L+LAPTREL+QQI G S C GG +
Sbjct: 65 TFAISILQQIELDL-----KATQALVLAPTRELAQQIQKVVMALGDYMGASCHACIGGTN 119
Query: 280 KWDQSKALELG-AEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
+ + L++ I+VGTPGR+ DM+ + VLDEAD M G
Sbjct: 120 VRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSRG 171
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 110 bits (276), Expect = 8e-30
Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 7/166 (4%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
S F F L++A+ C + P+ +Q + +P A+ G D++ AK+G GKT F+ L
Sbjct: 1 SGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATL 60
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGS--KWDQS 284
+ L++ TREL+ QI E +RF K V + GG K D+
Sbjct: 61 QQLEPVT-----GQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE 115
Query: 285 KALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
+ IVVGTPGRI+ + + + L + +LDE D+M +
Sbjct: 116 VLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL 161
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 106 bits (264), Expect = 4e-28
Identities = 54/164 (32%), Positives = 91/164 (55%), Gaps = 6/164 (3%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
+ F + L+ + + + P+PIQ +++P ALSGRDI+ AK G+GK+GA++ P+L
Sbjct: 3 NEFEDYCLKRELLMGIFEMGWEKPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLL 62
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGY-NLSVVCCYGGGSKWDQSK 285
+ +K D +++ PTREL+ Q+ + K V+ GG + D
Sbjct: 63 ERLDLKK-----DNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIM 117
Query: 286 ALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329
L+ +V+ TPGRI+D++K G K++ V +VLDEAD++
Sbjct: 118 RLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 102 bits (255), Expect = 1e-26
Identities = 53/163 (32%), Positives = 85/163 (52%), Gaps = 5/163 (3%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
++F F L+ + + + P+PIQ +A+P A++GRDI+ AK G+GKT AF+ P L
Sbjct: 1 NTFEDFYLKRELLMGIFEAGFEKPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTL 60
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA 286
+ + + LI+ PTREL+ Q + GK +S + GG + D
Sbjct: 61 EKVKPKL-----NKIQALIMVPTRELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILR 115
Query: 287 LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329
L I+VGTPGR++D+ L+ + ++DEAD+M
Sbjct: 116 LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR 158
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 102 bits (255), Expect = 2e-26
Identities = 30/188 (15%), Positives = 53/188 (28%), Gaps = 20/188 (10%)
Query: 151 AKSGITVSGADPPYPVSSFGHFGFDEVL--MKALRKCEYTSPTPIQAQAVPAALSGRDII 208
A + + A +S F D +L + P IQ L
Sbjct: 3 AAAAAAAAAAAAAAAAASLCLFPEDFLLKEFVEFFRKCVGEPRAIQKMWAKRILRKESFA 62
Query: 209 GVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYN 268
A TG GKT + L + K ++ PT L Q +++ +
Sbjct: 63 ATAPTGVGKTSFGLAMSLFLALKGK--------RCYVIFPTSLLVIQAAETIRKYAEKAG 114
Query: 269 LSVVCCYGGGSKWDQSKAL------ELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDE 322
+ G + +IV+ T + + L F+ +D+
Sbjct: 115 VGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE----LGHFDFIFVDD 170
Query: 323 ADRMFDMG 330
D +
Sbjct: 171 VDAILKAS 178
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 96.6 bits (239), Expect = 2e-24
Identities = 26/166 (15%), Positives = 55/166 (33%), Gaps = 12/166 (7%)
Query: 166 VSSFGHFGFDEVLMKALRKC-EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWP 224
++ + + L++ Y P Q + + LSGRD + V TG GK+ + P
Sbjct: 1 MAQAEVLNLESGAKQVLQETFGYQQFRPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIP 60
Query: 225 MLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQS 284
L+ + ++++P L + ++ + G +
Sbjct: 61 ALLLN-----------GLTVVVSPLISLMKDQVDQLQANGVAAACLNSTQTREQQLEVMT 109
Query: 285 KALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
++ P R++ + L +DEA + G
Sbjct: 110 GCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWG 155
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 89.3 bits (220), Expect = 1e-21
Identities = 30/158 (18%), Positives = 60/158 (37%), Gaps = 12/158 (7%)
Query: 173 GFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQ 232
+ L++ P QA+AV SG++++ T +GKT M+ +
Sbjct: 9 SISSYAVGILKEEGIEELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKG 68
Query: 233 KELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAE 292
L + P R L+ + Y K++ K + S+ + +
Sbjct: 69 --------GKSLYVVPLRALAGEKYESFKKWEKIGLRIGISTGDYESRDEHLG----DCD 116
Query: 293 IVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDMG 330
I+V T + +++ A+ + V+ LV+DE +
Sbjct: 117 IIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEK 154
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 85.1 bits (209), Expect = 3e-20
Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 1/163 (0%)
Query: 167 SSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPML 226
+ F F F +++A++ + PT IQ + +P AL G ++G ++TG+GKT A+ +
Sbjct: 1 TQFTRFPFQPFIIEAIKTLRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAY-LLPI 59
Query: 227 VHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKA 286
+ + + E ++ + K K + C GG K +
Sbjct: 60 MEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEK 119
Query: 287 LELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDEADRMFDM 329
L + IV+GTPGRI D ++ A ++ LV+DEAD M DM
Sbjct: 120 LNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLDM 162
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 78.8 bits (193), Expect = 2e-17
Identities = 19/128 (14%), Positives = 41/128 (32%), Gaps = 19/128 (14%)
Query: 203 SGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKR 262
R I G+GKT ++ ++ + + G LILAPTR ++ ++ +
Sbjct: 8 KKRLTIMDLHPGAGKTKRYLPAIVREAIKR-------GLRTLILAPTRVVAAEMEEALRG 60
Query: 263 FGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTFLVLDE 322
Y + G + + + + ++ +++DE
Sbjct: 61 LPIRYQTPAIRAEHTGREIV-----------DLMCHATFTMRL-LSPIRVPNYNLIIMDE 108
Query: 323 ADRMFDMG 330
A
Sbjct: 109 AHFTDPAS 116
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 62.9 bits (151), Expect = 3e-12
Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 10/148 (6%)
Query: 182 LRKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGP 241
LR+ + P Q + + V TG GKT + + G
Sbjct: 3 LRR-DLIQPRIYQEVIYAKCK-ETNCLIVLPTGLGKTLIAMMIAEYRLTKY-------GG 53
Query: 242 MGLILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRI 301
L+LAPT+ L Q +R +V G S ++SKA A+++V TP I
Sbjct: 54 KVLMLAPTKPLVLQHAESFRRLFNLPPEKIVALTGEKSPEERSKAWA-RAKVIVATPQTI 112
Query: 302 IDMVKMGATKLNRVTFLVLDEADRMFDM 329
+ + G L V+ +V DEA R
Sbjct: 113 ENDLLAGRISLEDVSLIVFDEAHRAVGN 140
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 36.4 bits (83), Expect = 0.001
Identities = 19/128 (14%), Positives = 30/128 (23%), Gaps = 25/128 (19%)
Query: 199 PAALSGRDI-IGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIY 257
PA + A TGSGK+ G L+L P+ +
Sbjct: 2 PAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ-----------GYKVLVLNPSVAATLGF- 49
Query: 258 NEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMGATKLNRVTF 317
K + + G + S T + G
Sbjct: 50 --GAYMSKAHGVDPNIRTGVRTITTGSP----------ITYSTYGKFLADGGCSGGAYDI 97
Query: 318 LVLDEADR 325
++ DE
Sbjct: 98 IICDECHS 105
>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 206
Score = 34.9 bits (79), Expect = 0.007
Identities = 26/138 (18%), Positives = 37/138 (26%), Gaps = 26/138 (18%)
Query: 189 SPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAP 248
S Q +A+ L + V TGSGKT + + LI+ P
Sbjct: 70 SLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-----------STPTLIVVP 118
Query: 249 TRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDMVKMG 308
T L++Q FG+ Y T
Sbjct: 119 TLALAEQWKERLGIFGEEYVGEFSGRIKELKPL---------------TVSTYDSAYVNA 163
Query: 309 ATKLNRVTFLVLDEADRM 326
NR L+ DE +
Sbjct: 164 EKLGNRFMLLIFDEVHHL 181
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.7 bits (73), Expect = 0.022
Identities = 18/103 (17%), Positives = 36/103 (34%), Gaps = 8/103 (7%)
Query: 204 GRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEAKRF 263
G + G+GKT F+ +L + L+LAPTR + ++
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARR-------RLRTLVLAPTRVVLSEMKEAFHGL 59
Query: 264 GKGYNLSVVCCYGGGSK-WDQSKALELGAEIVVGTPGRIIDMV 305
++ +G G + D L ++ T +++
Sbjct: 60 DVKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVI 102
>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}
Length = 90
Score = 28.3 bits (63), Expect = 0.39
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 166 VSSFGHFGFDEVLMKALRKCEYTSPTPIQAQAVP 199
+S+ F+ + A+R+ Y P V
Sbjct: 45 LSAKPANMFEREVKNAMRRWRYEPGKPGSGIVVN 78
>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase
{Bacillus subtilis [TaxId: 1423]}
Length = 329
Score = 29.8 bits (66), Expect = 0.49
Identities = 31/207 (14%), Positives = 60/207 (28%), Gaps = 19/207 (9%)
Query: 131 FYQPHEDIARLTPQEAQELRAKSGITVSGADPPYPVSSFGHFGFDEVLMKALRKCEYTSP 190
F + +EA E+ + + + V G F L K + +
Sbjct: 100 FANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGAL-KRIEQICSRVS 158
Query: 191 TPIQAQAVPAALSGRDIIGVAK------TGSGKTGAFIWPMLVHIMDQKELEPGDGPMGL 244
P+ + V +S + + G G I + +
Sbjct: 159 VPVIVKEVGFGMSKASAGKLYEAGAAAVDIGGYGGT----NFSKIENLRRQRQISFFNSW 214
Query: 245 ILAPTRELSQQIYNEAKRFGKGYNLSVVCCYGGGSKWDQSKALELGAEIVVGTPGRIIDM 304
++ L A+ + +++ G D +KA+ LGA + +
Sbjct: 215 GISTAASL-------AEIRSEFPASTMIASGGLQDALDVAKAIALGASCTGMAGHFLKAL 267
Query: 305 VKMGATKLNRVTFLVLDEADR-MFDMG 330
G L L+L+E M +G
Sbjct: 268 TDSGEEGLLEEIQLILEELKLIMTVLG 294
>d2odfa1 c.56.5.9 (A:6-257) Hypothetical protein Atu2144
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 252
Score = 28.1 bits (62), Expect = 1.2
Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 3/66 (4%)
Query: 92 VDLEYDEDGNPIAPKKSKYIDPLPPIDHSTIVYEEVEKNFYQPHEDIARLTPQEAQELRA 151
D + P KS+ D D Y P D + E +A
Sbjct: 82 YDCNRPPESPSAMPVKSEIYDIPGNFDLDEAERFARTSALYVPFHDRVS---EIIAERQA 138
Query: 152 KSGITV 157
V
Sbjct: 139 AGRKVV 144
>d2foka4 c.52.1.12 (A:387-579) Restriction endonuclease FokI,
C-terminal (catalytic) domain {Flavobacterium
okeanokoites [TaxId: 244]}
Length = 193
Score = 27.6 bits (61), Expect = 1.5
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 233 KELEPGDGPMGLILAPTRELSQQIYNEAKRFGKGYNLSV 271
K L P G I + + + K + GYNL +
Sbjct: 55 KHLGGSRKPDGAIYTVGSPIDYGVIVDTKAYSGGYNLPI 93
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme UvrB
{Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 27.5 bits (60), Expect = 2.3
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 22/87 (25%)
Query: 186 EYTSPTPI--QAQAVPAALSG-------RDIIGVAKTGSGKTGAFIWPMLVHIMDQKELE 236
Y P+P Q +A+ + ++G TG+GKT + +++
Sbjct: 3 RYRGPSPKGDQPKAIAGLVEALRDGERFVTLLGA--TGTGKT-----VTMAKVIEAL--- 52
Query: 237 PGDGPMGLILAPTRELSQQIYNEAKRF 263
P L+LAP + L+ Q+ E +
Sbjct: 53 --GRPA-LVLAPNKILAAQLAAEFREL 76
>d1f0la2 d.166.1.1 (A:1-187) Diphtheria toxin, N-terminal domain
{Corynebacterium diphtheriae [TaxId: 1717]}
Length = 187
Score = 26.3 bits (57), Expect = 4.7
Identities = 31/99 (31%), Positives = 44/99 (44%), Gaps = 13/99 (13%)
Query: 215 SGKTGAFI---WPMLVHIMDQKELEPGDGPMGLILAPTRELSQQIYNEA--KRFGKGYN- 268
SGK G + +P L ++ K L L+ T L +Q+ E KRFG G +
Sbjct: 74 SGKAGGVVKVTYPGLTKVLALKVDNAETIKKELGLSLTEPLMEQVGTEEFIKRFGDGASR 133
Query: 269 --LSVVCCYGGGS-----KWDQSKALELGAEIVVGTPGR 300
LS+ G S W+Q+KAL + EI T G+
Sbjct: 134 VVLSLPFAEGSSSVEYINNWEQAKALSVELEINFETRGK 172
>d1uf2c1 a.115.1.3 (C:1-147,C:301-421) RDV p8 {Rice dwarf virus
[TaxId: 10991]}
Length = 268
Score = 26.5 bits (58), Expect = 4.8
Identities = 15/83 (18%), Positives = 21/83 (25%), Gaps = 24/83 (28%)
Query: 127 VEKNFYQPHEDIAR------LTPQEAQELRAKSGITVSGADPPY---------------- 164
+ P D R L P +L + + G D PY
Sbjct: 104 IRPRLQVPMSDTVRQLNNLSLQPSAKPKLYERQNAIMKGLDIPYANRSQAYYTLNSITQT 163
Query: 165 --PVSSFGHFGFDEVLMKALRKC 185
+ F F + LR C
Sbjct: 164 PTSIDDFDVSDFLTTFLSQLRAC 186
>d1uija1 b.82.1.2 (A:6-175) Seed storage 7S protein {Soybean
(Glycine max), beta-conglycinin beta subunit [TaxId:
3847]}
Length = 170
Score = 26.0 bits (57), Expect = 5.6
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 21/74 (28%)
Query: 6 YIPAPGSPSYKGNNAS---------ADTDSDEDPLDAF-----------MKGIDKEVKQE 45
IPA G+ Y N A + D F ++G + +
Sbjct: 97 RIPA-GTTYYLVNPHDHQNLKMIWLAIPVNKPGRYDDFFLSSTQAQQSYLQGFSHNILET 155
Query: 46 AKGVKTKKIEEVKG 59
+ + ++I V
Sbjct: 156 SFHSEFEEINRVLF 169
>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain
(RecD) {Escherichia coli [TaxId: 562]}
Length = 359
Score = 26.0 bits (56), Expect = 6.5
Identities = 14/74 (18%), Positives = 28/74 (37%), Gaps = 4/74 (5%)
Query: 183 RKCEYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPM 242
+ + Q A AL+ R + G+GKT + I ++ G+
Sbjct: 142 KLFPVSDEINWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALI----QMADGERCR 197
Query: 243 GLILAPTRELSQQI 256
+ APT + + ++
Sbjct: 198 IRLAAPTGKAAARL 211
>d2b2na1 c.37.1.19 (A:26-333) Transcription-repair coupling factor,
TRCF {Escherichia coli [TaxId: 562]}
Length = 308
Score = 26.0 bits (56), Expect = 7.4
Identities = 6/25 (24%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 239 DGPMGLILAPTRELSQQIYNEAKRF 263
GP+ +++AP + + ++++E +F
Sbjct: 14 AGPV-VLIAPDMQNALRLHDEISQF 37
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 25.7 bits (55), Expect = 8.6
Identities = 10/74 (13%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Query: 186 EYTSPTPIQAQAVPAALSGRDIIGVAKTGSGKTGAFIWPMLVHIMDQKELEPGDGPMGLI 245
E + +P R ++ TG+GK+ + + + + G +I
Sbjct: 32 EKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKS-VLLRELAYTGLLR-------GDRMVI 83
Query: 246 LAPTRELSQQIYNE 259
+ P ++ + +
Sbjct: 84 VDPNGDMLSKFGRD 97
>d1fota_ d.144.1.7 (A:) cAMP-dependent PK, catalytic subunit
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 25.4 bits (55), Expect = 9.3
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 7/61 (11%)
Query: 34 FMKGIDKEVKQEAKGVKTKKIEEVKGIRDDIDHEDDEESYYRYMEENPNAGLQDNDSDVD 93
+ K + E K ++ ++T ++ + D + +Y EE+ N G+Q D D
Sbjct: 259 WFKEVVWE-KLLSRNIETPYEPPIQ------QGQGDTSQFDKYPEEDINYGVQGEDPYAD 311
Query: 94 L 94
L
Sbjct: 312 L 312
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.135 0.393
Gapped
Lambda K H
0.267 0.0438 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,301,329
Number of extensions: 64614
Number of successful extensions: 195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 181
Number of HSP's successfully gapped: 34
Length of query: 330
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 244
Effective length of database: 1,226,816
Effective search space: 299343104
Effective search space used: 299343104
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.9 bits)