BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17645
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
pdb|2R83|B Chain B, Crystal Structure Analysis Of Human Synaptotagmin 1
C2a-c2b
Length = 284
Score = 173 bits (439), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 86/138 (62%), Positives = 99/138 (71%), Gaps = 13/138 (9%)
Query: 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
K + +L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 7 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 66
Query: 88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
PVFNE F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +
Sbjct: 67 PVFNEQFTFK-------------VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 113
Query: 148 DLAQTIEEWRELQSVEGE 165
D EEWR+LQS E E
Sbjct: 114 DFGHVTEEWRDLQSAEKE 131
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
+L Y A L+V +++A++L +D+GG SDPYVK++L+ + + KK +T + + TLNP
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 143
+NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 202 YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 242
>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A
Novel Ca2+(slash)phospholipid Binding Fold
Length = 152
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 13/136 (9%)
Query: 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
K + +L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 30 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 89
Query: 88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
PVFNE F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +
Sbjct: 90 PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 136
Query: 148 DLAQTIEEWRELQSVE 163
D EEWR+LQS E
Sbjct: 137 DFGHVTEEWRDLQSAE 152
>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of
Synaptotagmin I
pdb|2K8M|A Chain A, S100a13-C2a Binary Complex Structure
pdb|2K8M|D Chain D, S100a13-C2a Binary Complex Structure
pdb|2K45|A Chain A, C2a Domain Of Synaptototagmin I Solution Structure In The
Fgf-1-C2a Binary Complex: Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2K4A|A Chain A, Fgf-1-C2a Binary Complex Structure: A Key Component In The
Fibroblast Growthfactor Non-Classical Pathway
pdb|2KI6|A Chain A, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
pdb|2KI6|F Chain F, The Fgf1-S100a13-C2a Hetero-Hexameric Complex Structure: A
C In The Non-Classical Pathway For Fgf1 Secretion
Length = 128
Score = 171 bits (433), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/136 (62%), Positives = 98/136 (72%), Gaps = 13/136 (9%)
Query: 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
K + +L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 5 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 64
Query: 88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
PVFNE F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +
Sbjct: 65 PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 111
Query: 148 DLAQTIEEWRELQSVE 163
D EEWR+LQS E
Sbjct: 112 DFGHVTEEWRDLQSAE 127
>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
Length = 143
Score = 169 bits (428), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 97/135 (71%), Gaps = 13/135 (9%)
Query: 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
K + +L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
PVFNE F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +
Sbjct: 82 PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Query: 148 DLAQTIEEWRELQSV 162
D EEWR+LQS
Sbjct: 129 DFGHVTEEWRDLQSA 143
>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain
pdb|3F01|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Cu(Ii)
pdb|3F05|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With
Mn(Ii)
Length = 143
Score = 169 bits (428), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 97/135 (71%), Gaps = 13/135 (9%)
Query: 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLN 87
K + +L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLN
Sbjct: 22 KLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLN 81
Query: 88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
PVFNE F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +
Sbjct: 82 PVFNEQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTV 128
Query: 148 DLAQTIEEWRELQSV 162
D EEWR+LQS
Sbjct: 129 DFGHVTEEWRDLQSA 143
>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Vii
Length = 141
Score = 124 bits (312), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 12/136 (8%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
++ Y+F ++L+V +++A++LPA D GTSDP+VK+YLLPDKK K ETKV RK LNP +N
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
ETF+F +G PY + + L + D+DRFS++D IGEV + L ++DL Q
Sbjct: 78 ETFLF------------EGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ 125
Query: 152 TIEEWRELQSVEGEGG 167
W++L+ G
Sbjct: 126 MQTFWKDLKPSGPSSG 141
>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B
Length = 296
Score = 122 bits (306), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 99/166 (59%), Gaps = 28/166 (16%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
L Y + ++ L V ++QA DLPA D G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FN
Sbjct: 12 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 71
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
ETF F VP A+ + L F+++DFDRFS+HD IG+V V ++LA+
Sbjct: 72 ETFQF-------------SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV-VLDNLLELAE 117
Query: 152 TIEE---WRELQSVEGEGGQVYYLDGPKGNLATGKKAL-YLPNVGV 193
+ WR++ EGG K +L +L YLP G+
Sbjct: 118 QPPDRPLWRDIL----EGGS------EKADLGELNFSLCYLPTAGL 153
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 16/130 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
+L Y A L+VT+I+A +L A+D+ G SDPYVK L+ + + KK +T + + TLNP
Sbjct: 144 SLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPT 203
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NE VF V+ E E N L A+ D+D ++ IG +V D
Sbjct: 204 YNEALVFDVA----PESVE---------NVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD- 249
Query: 150 AQTIEEWREL 159
E W E+
Sbjct: 250 PHGREHWAEM 259
>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin
pdb|3HN8|B Chain B, Crystal Structure Of Synaptotagmin
pdb|3HN8|C Chain C, Crystal Structure Of Synaptotagmin
Length = 296
Score = 122 bits (306), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 74/166 (44%), Positives = 99/166 (59%), Gaps = 28/166 (16%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
L Y + ++ L V ++QA DLPA D G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FN
Sbjct: 13 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 72
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
ETF F VP A+ + L F+++DFDRFS+HD IG+V V ++LA+
Sbjct: 73 ETFQF-------------SVPLAELAQRKLHFSVYDFDRFSRHDLIGQV-VLDNLLELAE 118
Query: 152 TIEE---WRELQSVEGEGGQVYYLDGPKGNLATGKKAL-YLPNVGV 193
+ WR++ EGG K +L +L YLP G+
Sbjct: 119 QPPDRPLWRDIL----EGGS------EKADLGELNFSLCYLPTAGL 154
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/130 (34%), Positives = 66/130 (50%), Gaps = 16/130 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
+L Y A L+VT+I+A +L A+D+ G SDPYVK L+ + + KK +T + + TLNP
Sbjct: 145 SLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPT 204
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NE VF V+ E E N L A+ D+D ++ IG +V D
Sbjct: 205 YNEALVFDVA----PESVE---------NVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD- 250
Query: 150 AQTIEEWREL 159
E W E+
Sbjct: 251 PHGREHWAEM 260
>pdb|2ENP|A Chain A, Solution Structure Of The First C2 Domain From Human BK
Protein
Length = 147
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 53/135 (39%), Positives = 77/135 (57%), Gaps = 20/135 (14%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPA-LDMGGT------SDPYVKVYLLPDKKKKFETKVHRK 84
+ +YD N L+V VI+A DLP + G+ S+PYVK+ LLPD+K +T V RK
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77
Query: 85 TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
T PVF E + F++ FL +A +TL+ + DFD+FS+H IG+V V L
Sbjct: 78 TQKPVFEERYTFEIPFL-------------EAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124
Query: 145 CQIDLAQTIEEWREL 159
C++DL + W+ L
Sbjct: 125 CEVDLVKGGHWWKAL 139
>pdb|1UGK|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin
Iv From Human Fetal Brain (Kiaa1342)
Length = 138
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 13/121 (10%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
+LEY+F + V + +A LPA+D TSDPY+K+ +LP+KK K +T+V RKTL+P F
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
+ETF F G+PY L F I FDRFS+ D IGEV + L I+L+
Sbjct: 74 DETFTF------------YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121
Query: 151 Q 151
+
Sbjct: 122 E 122
>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a
Length = 142
Score = 76.6 bits (187), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 30 EQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLN 87
E +L YD + ++L T+I+A+ L +D G +DPYVK++LLP K K TK R T N
Sbjct: 19 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78
Query: 88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
PV+NET + G+ D KTL ++ D D+F ++ IGE + +L ++
Sbjct: 79 PVWNETLQY------------HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 126
Query: 148 DLAQ 151
Q
Sbjct: 127 KANQ 130
>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The
C2a Domain Of Rabphilin-3a
Length = 140
Score = 76.6 bits (187), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 44/124 (35%), Positives = 67/124 (54%), Gaps = 14/124 (11%)
Query: 30 EQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLN 87
E +L YD + ++L T+I+A+ L +D G +DPYVK++LLP K K TK R T N
Sbjct: 17 EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 76
Query: 88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
PV+NET + G+ D KTL ++ D D+F ++ IGE + +L ++
Sbjct: 77 PVWNETLQY------------HGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKL 124
Query: 148 DLAQ 151
Q
Sbjct: 125 KANQ 128
>pdb|3N5A|A Chain A, Synaptotagmin-7, C2b-Domain, Calcium Bound
Length = 138
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 74/130 (56%), Gaps = 17/130 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
+L Y+ +ANS+ V +I+A +L A+D+GGTSDPYVKV+L+ K+ K +T ++ LNP+
Sbjct: 8 SLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI 67
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
FNE+F F +P T++ + D D+ S++D IG K+ L
Sbjct: 68 FNESFAF-------------DIPTEKLRETTIIITVMDKDKLSRNDVIG--KIYLSWKSG 112
Query: 150 AQTIEEWREL 159
++ W+++
Sbjct: 113 PGEVKHWKDM 122
>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A
Janus-Faced Domain
Length = 140
Score = 74.3 bits (181), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 27/144 (18%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
+L Y L V +I+ L A+D G SDP+VK++L PD KK K +T++ +KTLNP
Sbjct: 7 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL----- 144
FNE F + + ++D K+L +++D+D +D IG ++ +
Sbjct: 67 FNEEFFYDIK-------------HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 113
Query: 145 -------CQIDLAQTIEEWRELQS 161
C + + IE W +LQ+
Sbjct: 114 RLKHWYECLKNKDKKIERWHQLQN 137
>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a
pdb|2CM6|B Chain B, Crystal Structure Of The C2b Domain Of Rabphilin3a
Length = 166
Score = 74.3 bits (181), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 72/144 (50%), Gaps = 27/144 (18%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
+L Y L V +I+ L A+D G SDP+VK++L PD KK K +T++ +KTLNP
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL----- 144
FNE F + + ++D K+L +++D+D +D IG ++ +
Sbjct: 89 FNEEFFYD-------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 135
Query: 145 -------CQIDLAQTIEEWRELQS 161
C + + IE W +LQ+
Sbjct: 136 RLKHWYECLKNKDKKIERWHQLQN 159
>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin
Length = 166
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 71/144 (49%), Gaps = 27/144 (18%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
+L Y L V +I+ L A D G SDP+VK++L PD KK K +T++ +KTLNP
Sbjct: 29 SLXYSTQQGGLIVGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPE 88
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL----- 144
FNE F + + ++D K+L +++D+D +D IG ++ +
Sbjct: 89 FNEEFFYD-------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 135
Query: 145 -------CQIDLAQTIEEWRELQS 161
C + + IE W +LQ+
Sbjct: 136 RLKHWYECLKNKDKKIERWHQLQN 159
>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo
C2a- Domain
Length = 142
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 70/142 (49%), Gaps = 23/142 (16%)
Query: 30 EQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFE 78
E L+ +++ +L + ++QA +L D G SDP+VKVYLLP + + K
Sbjct: 8 EIQLQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRR 67
Query: 79 TKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIG 138
TK +K+LNP +N+T ++K + M KTL ++D+DRFS +D +G
Sbjct: 68 TKYVQKSLNPEWNQTVIYK------------SISMEQLMKKTLEVTVWDYDRFSSNDFLG 115
Query: 139 EVKVALCQIDLAQTIEEWRELQ 160
EV + L W L+
Sbjct: 116 EVLIDLSSTSHLDNTPRWYPLK 137
>pdb|2DMG|A Chain A, Solution Structure Of The Third C2 Domain Of Kiaa1228
Protein
Length = 142
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 73/144 (50%), Gaps = 18/144 (12%)
Query: 25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVH-- 82
P+ + + T+ + N L V V +L A G SDPYV++YLLPDK++ K H
Sbjct: 9 PLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVS 67
Query: 83 RKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEV 140
+KTLNPVF+++F F VS + +TL A+ + F D+ +G+V
Sbjct: 68 KKTLNPVFDQSFDFSVSL-------------PEVQRRTLDVAVKNSGGFLSKDKGLLGKV 114
Query: 141 KVALCQIDLAQTIEEWRELQSVEG 164
VAL +LA+ +W +L G
Sbjct: 115 LVALASEELAKGWTQWYDLTEDSG 138
>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|B Chain B, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma.
pdb|2UZP|C Chain C, Crystal Structure Of The C2 Domain Of Human Protein Kinase
C Gamma
Length = 144
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 43/130 (33%), Positives = 71/130 (54%), Gaps = 18/130 (13%)
Query: 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVF 96
A+ + VTV +A +L +D G SDPYVK+ L+PD + K +T+ + TLNPV+NETFVF
Sbjct: 19 ADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLNPVWNETFVF 78
Query: 97 KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
+ + + L ++D+DR S++D +G + + ++ L ++ W
Sbjct: 79 NLK--------------PGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSEL-LKAPVDGW 123
Query: 157 -RELQSVEGE 165
+ L EGE
Sbjct: 124 YKLLNQEEGE 133
>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With
Ca2+ And Phosphatidylserine
Length = 139
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/147 (31%), Positives = 77/147 (52%), Gaps = 19/147 (12%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 90
L+ + L VTV A++L +D G SDPYVK+ L+PD K K +TK R TLNP +
Sbjct: 10 LKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQW 69
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
NE+F FK+ ++ ++ L I+D+DR +++D +G + + ++ +
Sbjct: 70 NESFTFKLKPSDK--------------DRRLSVEIWDWDRTTRNDFMGSLSFGVSEL-MK 114
Query: 151 QTIEEWRELQSVEGEGGQVYYLDGPKG 177
W +L + E G+ Y + P+G
Sbjct: 115 MPASGWYKL--LNQEEGEYYNVPIPEG 139
>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain
Complexed With Ca2+ And Ptdins(4,5)p2
pdb|3RDJ|A Chain A, Rat Pkc C2 Domain Apo
pdb|3TWY|A Chain A, Rat Pkc C2 Domain Bound To Pb
Length = 137
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 70/135 (51%), Gaps = 16/135 (11%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 90
L+ + L VTV A++L +D G SDPYVK+ L+PD K K +TK R TLNP +
Sbjct: 9 LKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQW 68
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
NE+F FK+ ++ ++ L I+D+DR +++D +G + + ++
Sbjct: 69 NESFTFKLKPSDK--------------DRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM 114
Query: 151 QTIEEWRELQSVEGE 165
++ L EGE
Sbjct: 115 PASGWYKLLNQEEGE 129
>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C
Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution
Length = 140
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 16/126 (12%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVS 99
L VTV A++L D G SDPYVK+ L+PD K K +TK R TLNP +NE+F FK+
Sbjct: 20 LHVTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLK 79
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159
++ ++ L I+D+DR +++D G + + ++ ++ L
Sbjct: 80 PSDK--------------DRRLSVEIWDWDRTTRNDFXGSLSFGVSELXKXPASGWYKLL 125
Query: 160 QSVEGE 165
EGE
Sbjct: 126 NQEEGE 131
>pdb|1W15|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Presence Of Calcium
pdb|1W16|A Chain A, Rat Synaptotagmin 4 C2b Domain In The Absence Of Calcium
Length = 153
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 60/111 (54%), Gaps = 15/111 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
+L Y N+L+V V++A LP D+ G SDPYVKV L KK+ K +T V + T N V
Sbjct: 22 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 81
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140
FNE FVF + + E+ ++ F + D +R S+++ IG +
Sbjct: 82 FNELFVFDIPCESLEEI-------------SVEFLVLDSERGSRNEVIGRL 119
>pdb|1TJM|A Chain A, Crystallographic Identification Of Sr2+ Coordination Site
In Synaptotagmin I C2b Domain
pdb|1UOV|A Chain A, Calcium Binding Domain C2b
pdb|1UOW|A Chain A, Calcium Binding Domain C2b
pdb|1TJX|A Chain A, Crystallographic Identification Of Ca2+ Coordination Sites
In Synaptotagmin I C2b Domain
Length = 159
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
+L Y A L+V +++A++L +D+GG SDPYVK++L+ + + KK +T + + TLNP
Sbjct: 17 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 143
+NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 77 YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 117
>pdb|2LHA|A Chain A, Solution Structure Of C2b With Ip6
Length = 151
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
+L Y A L+V +++A++L +D+GG SDPYVK++L+ + + KK +T + + TLNP
Sbjct: 9 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 68
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 143
+NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 69 YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 109
>pdb|1K5W|A Chain A, Three-Dimensional Structure Of The Synaptotagmin 1 C2b-
Domain: Synaptotagmin 1 As A Phospholipid Binding
Machine
Length = 152
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 66/114 (57%), Gaps = 15/114 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPV 89
+L Y A L+V +++A++L +D+GG SDPYVK++L+ + + KK +T + + TLNP
Sbjct: 10 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 69
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 143
+NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 70 YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVG 110
>pdb|3FDW|A Chain A, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
pdb|3FDW|B Chain B, Crystal Structure Of A C2 Domain From Human Synaptotagmin-
Like Protein 4
Length = 148
Score = 61.2 bits (147), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/141 (29%), Positives = 70/141 (49%), Gaps = 19/141 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKK--KFETKVHRKTLNP 88
+L+Y+ SL V V + L D S+PYVK YLLPDK + K +T + R T+NP
Sbjct: 15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNP 74
Query: 89 VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148
+++ET ++ +P + +TL F+++ RF ++ +GE ++ +
Sbjct: 75 LYDETLRYE-------------IPESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK 121
Query: 149 LAQTIEEWRELQ---SVEGEG 166
L + ++ L S E EG
Sbjct: 122 LDKKLDHCLPLHGKISAESEG 142
>pdb|1V27|A Chain A, Solution Structure Of The First C2 Domain Of Rim2
Length = 141
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 17/133 (12%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVF 90
L +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K K TK +KTL P +
Sbjct: 14 LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 73
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQID 148
N+TF++ S ++R E E + L ++D R + + +GE+ + L +
Sbjct: 74 NQTFIY--SPVHRREFRE----------RMLEITLWDQARVREEESEFLGEILIEL-ETA 120
Query: 149 LAQTIEEWRELQS 161
L W +LQ+
Sbjct: 121 LLDDEPHWYKLQT 133
>pdb|2BWQ|A Chain A, Crystal Structure Of The Rim2 C2a-Domain At 1.4 Angstrom
Resolution
Length = 129
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVF 90
L +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K K TK +KTL P +
Sbjct: 11 LWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKW 70
Query: 91 NETFVFKVSFLNRSEVFEQ 109
N+TF++ S ++R E E+
Sbjct: 71 NQTFIY--SPVHRREFRER 87
>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3
Ubiquitin-Protein Ligase Nedd4-Like Protein
Length = 155
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 20/110 (18%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYL-LPDKKKKF---ETKVHRKTLNPVFNETFVFK 97
L V V+ DL D+ G SDPYVK+ L + D+ ++ +TK +KTLNP +NE F F+
Sbjct: 23 LRVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFR 82
Query: 98 VSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
V + N L+F +FD +R ++ D +G+V V L +
Sbjct: 83 V----------------NPSNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116
>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein
Kinase C Beta Ii
Length = 674
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 16/126 (12%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVS 99
L V V A++L +D G SDPYVK+ L+PD K K +TK + +LNP +NETF F++
Sbjct: 174 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLK 233
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159
++ ++ L I+D+D S++D +G + + ++ A ++ L
Sbjct: 234 ESDK--------------DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLL 279
Query: 160 QSVEGE 165
EGE
Sbjct: 280 SQEEGE 285
>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta)
pdb|1A25|B Chain B, C2 Domain From Protein Kinase C (Beta)
Length = 149
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 66/126 (52%), Gaps = 16/126 (12%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVS 99
L V V A++L +D G SDPYVK+ L+PD K K +TK + +LNP +NETF F++
Sbjct: 33 LIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLK 92
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159
++ ++ L I+D+D S++D +G + + ++ A ++ L
Sbjct: 93 ESDK--------------DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLL 138
Query: 160 QSVEGE 165
EGE
Sbjct: 139 SQEEGE 144
>pdb|2B3R|A Chain A, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
pdb|2B3R|B Chain B, Crystal Structure Of The C2 Domain Of Class Ii
Phosphatidylinositide 3-Kinase C2
Length = 134
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 15/132 (11%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVF 90
L + +L + V+ +DL D G +PYVK YLLPD K K +TK+ RKT NP F
Sbjct: 13 LSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTF 71
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
NE V+ G + L ++ + ++ +G + + L +L+
Sbjct: 72 NEMLVY------------SGYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLS 119
Query: 151 QTIEEWRELQSV 162
+ +W +L +
Sbjct: 120 KETVKWYQLTAA 131
>pdb|3B7Y|A Chain A, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
pdb|3B7Y|B Chain B, Crystal Structure Of The C2 Domain Of The E3 Ubiquitin-
Protein Ligase Nedd4
Length = 153
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 55/115 (47%), Gaps = 19/115 (16%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYL---LPDKKKKFETKVHRKTLNPV 89
LE + N+ + V VI L D+ G SDPYV+V L + +TK +K+LNP
Sbjct: 13 LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
+NE +F+V L+F +FD +R ++ D +G+V V L
Sbjct: 73 WNEEILFRVH----------------PQQHRLLFEVFDENRLTRDDFLGQVDVPL 111
>pdb|3M7F|B Chain B, Crystal Structure Of The Nedd4 C2GRB10 SH2 COMPLEX
Length = 176
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYL---LPDKKKKFETKVHRKTLNPVFNETFVFKV 98
+ V VI L D+ G SDPYV+V L + +TK +K+LNP +NE +F+V
Sbjct: 10 VRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRV 69
Query: 99 SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
++F +FD +R ++ D +G+V V L
Sbjct: 70 L----------------PQRHRILFEVFDENRLTRDDFLGQVDVPL 99
>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free
pdb|3KWU|A Chain A, Munc13-1 C2b-Domain, Calcium Bound
Length = 148
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKV 98
+S+TV+ A+ L A D G+SDPYV V + KK+ TK LNPV+ E F F+
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKR---TKTIYGNLNPVWEENFHFEC 72
>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain
Length = 510
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 49/110 (44%), Gaps = 18/110 (16%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L V VI+A +L A G S+PY ++ + + + T+ + TLNP +N F F
Sbjct: 389 LMVHVIEATELKACKPNGKSNPYCEISM---GSQSYTTRTIQDTLNPKWN----FNCQFF 441
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
+ D L +FD D+FS D +G ++ + +I Q
Sbjct: 442 IK-----------DLYQDVLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQ 480
>pdb|2Q3X|A Chain A, The Rim1alpha C2b Domain
pdb|2Q3X|B Chain B, The Rim1alpha C2b Domain
Length = 171
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 40 NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVF 96
L V VI+A L T PYVKVYLL + K +T++ RKTL+P++ ++ VF
Sbjct: 30 GQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVF 89
Query: 97 KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
S P + V D+ R G ++ L ++DL+ + W
Sbjct: 90 DES------------PQGKVLQ---VIVWGDYGRXDHKCFXGVAQILLEELDLSSXVIGW 134
Query: 157 REL 159
+L
Sbjct: 135 YKL 137
>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human
Mctp2 Protein
Length = 133
Score = 40.4 bits (93), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 19/110 (17%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L V V++A DL A D G SDP+ + L D+ +T K LNP +N+ F F
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDR---LQTHTVYKNLNPEWNKVFTF----- 66
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
P D ++ L +FD D D +G+V + L I Q
Sbjct: 67 ----------PIKD-IHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105
>pdb|1RLW|A Chain A, Calcium-Phospholipid Binding Domain From Cytosolic
Phospholipase A2
Length = 126
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 56 DMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY 113
DM T DPYV++++ PD +K+ T+ +NPV+NETF F + N+ V E +
Sbjct: 22 DMLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWNETFEFILD-PNQENVLEITLMD 78
Query: 114 AD-AMNKTLVFAIF 126
A+ M++TL A F
Sbjct: 79 ANYVMDETLGTATF 92
>pdb|1BCI|A Chain A, C2 Domain Of Cytosolic Phospholipase A2, Nmr, Minimized
Average Structure
Length = 138
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 56 DMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY 113
DM T DPYV++++ PD +K+ T+ +NPV+NETF F + N+ V E +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWNETFEFILD-PNQENVLEITLMD 93
Query: 114 AD-AMNKTLVFAIF 126
A+ M++TL A F
Sbjct: 94 ANYVMDETLGTATF 107
>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2
pdb|1CJY|B Chain B, Human Cytosolic Phospholipase A2
Length = 749
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 6/74 (8%)
Query: 56 DMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY 113
DM T DPYV++++ PD +K+ T+ +NPV+NETF F + N+ V E +
Sbjct: 37 DMLDTPDPYVELFISTTPDSRKR--TRHFNNDINPVWNETFEFILD-PNQENVLEITLMD 93
Query: 114 AD-AMNKTLVFAIF 126
A+ M++TL A F
Sbjct: 94 ANYVMDETLGTATF 107
>pdb|3FBK|A Chain A, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
pdb|3FBK|B Chain B, Crystal Structure Of The C2 Domain Of The Human
Regulator Of G-Protein Signaling 3 Isoform 6 (Rgp3),
Northeast Structural Genomics Consortium Target Hr5550a
Length = 153
Score = 33.5 bits (75), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR--KTLNPVF 90
L D L + +I+ + L + GT DPYVK+ L+P+ + K +P F
Sbjct: 20 LSIDAQDRVLLLHIIEGKGLIS-KQPGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAF 78
Query: 91 NETFVFKV 98
+E F F V
Sbjct: 79 HEHFFFPV 86
>pdb|1WFJ|A Chain A, C2 Domain-Containing Protein From Putative Elicitor-
Responsive Gene
Length = 136
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 18/105 (17%)
Query: 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVS 99
+L V ++ A+ L D DPYV++ +K + T P +NETF+F VS
Sbjct: 10 GTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTT--PEWNETFIFTVS 67
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
+G L IFD D ++ D +GE + L
Sbjct: 68 ---------EGT-------TELKAKIFDKDVGTEDDAVGEATIPL 96
>pdb|2Z0U|A Chain A, Crystal Structure Of C2 Domain Of Kibra Protein
pdb|2Z0U|B Chain B, Crystal Structure Of C2 Domain Of Kibra Protein
Length = 155
Score = 28.1 bits (61), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 46/118 (38%), Gaps = 16/118 (13%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK---FETKVHRKTLNPV 89
L+YD ++ +IQ +L AL ++V +LP + F T+ + V
Sbjct: 36 LKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLV 95
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
FNE F S Y KTL + DR + +G +++L ++
Sbjct: 96 FNEVFWVSXS-------------YPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEV 140
>pdb|2DMH|A Chain A, Solution Structure Of The First C2 Domain Of Human
Myoferlin
Length = 140
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 57/131 (43%), Gaps = 16/131 (12%)
Query: 38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 97
++ L V V A ++P G DP V V K +K +TK LNPV+NE F
Sbjct: 5 SSGMLRVIVESASNIPKTKFG-KPDPIVSVIF---KDEKKKTKKVDNELNPVWNEILEFD 60
Query: 98 VSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWR 157
+ +G+P + +L + DF+ ++ IG VAL + Q+
Sbjct: 61 L----------RGIPL--DFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY 108
Query: 158 ELQSVEGEGGQ 168
+L S+ E GQ
Sbjct: 109 KLISLLNEKGQ 119
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|B Chain B, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|C Chain C, Putrescine Receptor (Potf) From E. Coli
pdb|1A99|D Chain D, Putrescine Receptor (Potf) From E. Coli
Length = 344
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 26/59 (44%)
Query: 68 YLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIF 126
Y+ PD FE + K + VF+ V + + S F+ VP A + + L +F
Sbjct: 14 YIAPDTVANFEKETGIKVVYDVFDSNEVLEGKLMAGSTGFDLVVPSASFLERQLTAGVF 72
>pdb|1WFM|A Chain A, The First C2 Domain Of Human Synaptotagmin Xiii
Length = 138
Score = 26.9 bits (58), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 53/131 (40%), Gaps = 17/131 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPVF 90
L+YD L VT ++A + G D YV+ + + +T + ++ L+ +
Sbjct: 18 CLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTW 74
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
E V ++ + TL + DRFS+H GE+++ L +
Sbjct: 75 EEGLVLPLA-------------EEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121
Query: 151 QTIEEWRELQS 161
+W EL++
Sbjct: 122 LGAAQWGELKT 132
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,204,366
Number of Sequences: 62578
Number of extensions: 254097
Number of successful extensions: 932
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 63
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)