Query psy17645
Match_columns 207
No_of_seqs 122 out of 1389
Neff 8.2
Searched_HMMs 46136
Date Fri Aug 16 19:20:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd08677 C2A_Synaptotagmin-13 C 99.9 5E-24 1.1E-28 156.3 12.9 117 27-159 1-118 (118)
2 cd08393 C2A_SLP-1_2 C2 domain 99.9 5.9E-23 1.3E-27 153.0 14.1 122 26-160 1-125 (125)
3 cd04029 C2A_SLP-4_5 C2 domain 99.9 3.2E-22 7E-27 149.0 14.7 121 27-160 2-125 (125)
4 cd08680 C2_Kibra C2 domain fou 99.9 1.4E-22 3.1E-27 150.7 12.7 119 28-159 2-124 (124)
5 cd08392 C2A_SLP-3 C2 domain fi 99.9 2.9E-22 6.4E-27 149.8 14.2 122 26-160 1-128 (128)
6 cd08387 C2A_Synaptotagmin-8 C2 99.9 4.4E-22 9.5E-27 147.7 14.7 122 26-160 2-123 (124)
7 cd08381 C2B_PI3K_class_II C2 d 99.9 3.8E-22 8.2E-27 148.0 14.2 118 27-159 2-121 (122)
8 cd08407 C2B_Synaptotagmin-13 C 99.9 1E-22 2.2E-27 154.0 11.3 131 26-171 1-135 (138)
9 cd08388 C2A_Synaptotagmin-4-11 99.9 6.5E-22 1.4E-26 148.0 15.3 125 25-161 1-128 (128)
10 cd08385 C2A_Synaptotagmin-1-5- 99.9 7.2E-22 1.6E-26 146.5 14.8 122 26-160 2-123 (124)
11 cd08389 C2A_Synaptotagmin-14_1 99.9 5.1E-22 1.1E-26 147.7 13.5 123 26-161 2-124 (124)
12 cd08406 C2B_Synaptotagmin-12 C 99.9 2.2E-22 4.8E-27 151.9 11.2 130 27-171 2-133 (136)
13 cd04030 C2C_KIAA1228 C2 domain 99.9 1.7E-21 3.6E-26 145.0 14.9 123 25-160 1-127 (127)
14 cd04028 C2B_RIM1alpha C2 domai 99.9 2.5E-21 5.5E-26 147.6 16.1 129 19-165 10-142 (146)
15 cd08386 C2A_Synaptotagmin-7 C2 99.9 1.6E-21 3.4E-26 144.8 14.2 124 26-161 2-125 (125)
16 cd08408 C2B_Synaptotagmin-14_1 99.9 6.7E-22 1.5E-26 149.7 11.2 132 26-171 1-135 (138)
17 cd08521 C2A_SLP C2 domain firs 99.9 5E-21 1.1E-25 141.5 14.3 120 27-159 1-123 (123)
18 cd08409 C2B_Synaptotagmin-15 C 99.9 1.9E-21 4.2E-26 147.1 11.1 132 27-172 2-135 (137)
19 cd08390 C2A_Synaptotagmin-15-1 99.9 1.3E-20 2.9E-25 139.3 14.5 122 27-161 1-123 (123)
20 cd08404 C2B_Synaptotagmin-4 C2 99.9 6.6E-21 1.4E-25 143.7 11.7 132 26-172 1-134 (136)
21 cd08692 C2B_Tac2-N C2 domain s 99.9 8.3E-21 1.8E-25 142.4 11.6 129 28-171 2-133 (135)
22 cd08384 C2B_Rabphilin_Doc2 C2 99.8 1.1E-20 2.4E-25 141.8 11.8 128 29-171 2-131 (133)
23 cd04031 C2A_RIM1alpha C2 domai 99.8 3.4E-20 7.3E-25 137.5 13.7 121 27-160 3-125 (125)
24 cd08405 C2B_Synaptotagmin-7 C2 99.8 1.5E-20 3.2E-25 141.8 11.0 131 26-171 1-133 (136)
25 cd08682 C2_Rab11-FIP_classI C2 99.8 4.9E-20 1.1E-24 137.2 13.4 120 42-183 1-125 (126)
26 cd08402 C2B_Synaptotagmin-1 C2 99.8 2.8E-20 6E-25 140.3 11.6 130 27-171 2-133 (136)
27 cd08403 C2B_Synaptotagmin-3-5- 99.8 2.8E-20 6E-25 139.9 11.4 130 27-171 1-132 (134)
28 cd08685 C2_RGS-like C2 domain 99.8 6.7E-20 1.4E-24 135.4 13.1 115 28-159 2-119 (119)
29 cd00276 C2B_Synaptotagmin C2 d 99.8 6.1E-20 1.3E-24 137.5 12.1 130 27-171 1-132 (134)
30 cd08410 C2B_Synaptotagmin-17 C 99.8 5.7E-20 1.2E-24 138.6 11.2 131 27-171 1-133 (135)
31 cd04020 C2B_SLP_1-2-3-4 C2 dom 99.8 2E-19 4.3E-24 139.7 13.8 123 26-160 1-137 (162)
32 cd08395 C2C_Munc13 C2 domain t 99.8 2.3E-19 4.9E-24 132.6 13.1 112 41-165 1-116 (120)
33 cd04010 C2B_RasA3 C2 domain se 99.8 2.9E-19 6.2E-24 136.7 13.6 140 41-182 1-146 (148)
34 cd04016 C2_Tollip C2 domain pr 99.8 7.7E-19 1.7E-23 130.0 14.7 115 40-182 2-118 (121)
35 KOG1028|consensus 99.8 5.1E-19 1.1E-23 156.0 15.7 149 23-192 150-298 (421)
36 cd04022 C2A_MCTP_PRT_plant C2 99.8 1.1E-18 2.5E-23 130.0 13.1 120 41-182 1-122 (127)
37 cd08379 C2D_MCTP_PRT_plant C2 99.8 1.8E-18 4E-23 128.8 13.1 103 42-163 2-113 (126)
38 cd04042 C2A_MCTP_PRT C2 domain 99.8 3.6E-18 7.9E-23 126.2 14.6 118 41-184 1-118 (121)
39 cd04025 C2B_RasA1_RasA4 C2 dom 99.8 6.2E-18 1.3E-22 125.2 13.6 122 41-183 1-122 (123)
40 cd04036 C2_cPLA2 C2 domain pre 99.8 6E-18 1.3E-22 124.6 13.3 105 42-162 2-106 (119)
41 cd04019 C2C_MCTP_PRT_plant C2 99.8 1E-17 2.2E-22 128.5 14.6 133 42-195 2-139 (150)
42 cd04035 C2A_Rabphilin_Doc2 C2 99.8 1.1E-17 2.4E-22 123.8 14.1 119 27-158 2-122 (123)
43 cd08376 C2B_MCTP_PRT C2 domain 99.8 1.4E-17 2.9E-22 122.0 14.1 104 41-162 1-104 (116)
44 cd08681 C2_fungal_Inn1p-like C 99.8 9.8E-18 2.1E-22 123.1 12.1 115 40-183 1-116 (118)
45 cd08400 C2_Ras_p21A1 C2 domain 99.8 3.3E-17 7.2E-22 122.1 14.6 122 40-190 4-125 (126)
46 cd08401 C2A_RasA2_RasA3 C2 dom 99.8 3.9E-17 8.5E-22 120.9 14.0 116 42-182 2-118 (121)
47 cd04024 C2A_Synaptotagmin-like 99.7 4.2E-17 9.1E-22 121.2 13.8 120 40-182 1-125 (128)
48 cd04009 C2B_Munc13-like C2 dom 99.7 3.2E-17 7E-22 123.2 13.1 113 25-149 1-118 (133)
49 cd08678 C2_C21orf25-like C2 do 99.7 5.1E-17 1.1E-21 120.9 14.0 122 42-190 1-122 (126)
50 cd08375 C2_Intersectin C2 doma 99.7 4.8E-17 1E-21 122.9 13.6 118 38-185 13-135 (136)
51 cd04026 C2_PKC_alpha_gamma C2 99.7 6E-17 1.3E-21 121.2 13.9 120 27-163 2-123 (131)
52 cd08688 C2_KIAA0528-like C2 do 99.7 2.4E-17 5.1E-22 119.9 11.2 104 42-161 1-109 (110)
53 cd04033 C2_NEDD4_NEDD4L C2 dom 99.7 9.6E-17 2.1E-21 120.2 14.1 120 42-184 2-131 (133)
54 cd08378 C2B_MCTP_PRT_plant C2 99.7 5.6E-17 1.2E-21 120.1 12.4 112 42-184 2-118 (121)
55 cd04041 C2A_fungal C2 domain f 99.7 3.2E-17 7E-22 119.4 10.8 106 40-160 1-107 (111)
56 cd04054 C2A_Rasal1_RasA4 C2 do 99.7 1.9E-16 4E-21 117.2 13.9 103 42-162 2-105 (121)
57 cd08690 C2_Freud-1 C2 domain f 99.7 1.9E-16 4.1E-21 121.8 14.3 122 42-170 4-130 (155)
58 cd04017 C2D_Ferlin C2 domain f 99.7 2.5E-16 5.5E-21 118.6 14.5 122 40-186 1-132 (135)
59 cd04015 C2_plant_PLD C2 domain 99.7 2.9E-16 6.3E-21 121.5 15.1 108 39-165 6-143 (158)
60 cd08675 C2B_RasGAP C2 domain s 99.7 1.5E-16 3.2E-21 120.3 13.0 123 42-165 1-124 (137)
61 cd04050 C2B_Synaptotagmin-like 99.7 1.2E-16 2.6E-21 115.2 11.7 100 42-162 2-103 (105)
62 cd08377 C2C_MCTP_PRT C2 domain 99.7 3.3E-16 7.3E-21 114.9 14.3 118 40-185 1-118 (119)
63 KOG1028|consensus 99.7 5E-17 1.1E-21 143.4 11.7 147 10-171 268-416 (421)
64 cd08391 C2A_C2C_Synaptotagmin_ 99.7 2.8E-16 6E-21 115.6 13.6 104 40-162 1-110 (121)
65 KOG0696|consensus 99.7 1E-17 2.2E-22 144.2 6.7 118 29-161 169-288 (683)
66 cd04011 C2B_Ferlin C2 domain s 99.7 1E-16 2.2E-21 116.7 10.9 106 38-161 2-110 (111)
67 cd04040 C2D_Tricalbin-like C2 99.7 3.4E-16 7.4E-21 114.3 13.2 113 42-171 1-113 (115)
68 cd04049 C2_putative_Elicitor-r 99.7 3.3E-16 7.2E-21 116.0 12.0 110 40-165 1-112 (124)
69 cd04045 C2C_Tricalbin-like C2 99.7 8E-16 1.7E-20 113.7 13.1 107 40-165 1-107 (120)
70 KOG1030|consensus 99.7 2.5E-16 5.4E-21 120.5 10.5 97 38-153 4-100 (168)
71 cd08382 C2_Smurf-like C2 domai 99.7 1.1E-15 2.3E-20 113.4 13.5 104 42-164 2-108 (123)
72 cd04043 C2_Munc13_fungal C2 do 99.7 1.4E-15 3E-20 112.9 14.1 107 40-161 1-110 (126)
73 cd08676 C2A_Munc13-like C2 dom 99.7 5.3E-16 1.1E-20 119.2 11.6 105 35-159 23-153 (153)
74 cd04044 C2A_Tricalbin-like C2 99.7 1.8E-15 3.9E-20 111.7 13.2 121 40-189 2-124 (124)
75 cd04027 C2B_Munc13 C2 domain s 99.7 2.1E-15 4.5E-20 112.4 13.6 114 41-182 2-126 (127)
76 cd04014 C2_PKC_epsilon C2 doma 99.7 2.8E-15 6.1E-20 112.3 13.9 103 39-160 3-117 (132)
77 cd04046 C2_Calpain C2 domain p 99.7 4.1E-15 8.9E-20 110.7 14.6 123 39-190 2-124 (126)
78 cd04039 C2_PSD C2 domain prese 99.7 1.3E-15 2.8E-20 110.6 11.5 95 40-151 1-99 (108)
79 cd08373 C2A_Ferlin C2 domain f 99.7 3.1E-15 6.7E-20 111.3 13.7 120 46-193 2-121 (127)
80 cd04051 C2_SRC2_like C2 domain 99.7 2.1E-15 4.6E-20 111.8 11.8 115 41-170 1-123 (125)
81 cd08394 C2A_Munc13 C2 domain f 99.6 6.7E-15 1.5E-19 109.1 14.1 102 40-165 2-105 (127)
82 cd04018 C2C_Ferlin C2 domain t 99.6 4.1E-15 9E-20 114.1 12.0 108 41-165 1-129 (151)
83 cd04013 C2_SynGAP_like C2 doma 99.6 1.4E-14 3E-19 110.4 13.9 126 39-190 10-141 (146)
84 cd08383 C2A_RasGAP C2 domain ( 99.6 1.7E-14 3.7E-19 105.4 13.3 114 42-183 2-115 (117)
85 cd04032 C2_Perforin C2 domain 99.6 1.8E-14 4E-19 107.5 11.4 107 23-148 12-118 (127)
86 cd08691 C2_NEDL1-like C2 domai 99.6 9.4E-14 2E-18 104.9 14.2 116 41-181 2-134 (137)
87 cd04048 C2A_Copine C2 domain f 99.6 7E-14 1.5E-18 103.1 12.3 102 45-161 5-114 (120)
88 cd04038 C2_ArfGAP C2 domain pr 99.6 7E-14 1.5E-18 106.6 11.9 91 40-150 2-92 (145)
89 cd04037 C2E_Ferlin C2 domain f 99.6 6.4E-14 1.4E-18 104.0 11.4 92 41-148 1-92 (124)
90 cd00275 C2_PLC_like C2 domain 99.6 1.9E-13 4.2E-18 101.3 14.0 107 40-165 2-114 (128)
91 cd04021 C2_E3_ubiquitin_ligase 99.5 2.5E-13 5.4E-18 101.0 13.7 104 40-163 2-110 (125)
92 PLN02223 phosphoinositide phos 99.5 1.9E-13 4.2E-18 122.1 13.7 138 7-165 377-523 (537)
93 cd04052 C2B_Tricalbin-like C2 99.5 3E-13 6.5E-18 98.5 10.8 101 57-189 9-110 (111)
94 PLN03008 Phospholipase D delta 99.5 5.1E-13 1.1E-17 124.1 13.8 127 38-191 12-180 (868)
95 cd04047 C2B_Copine C2 domain s 99.5 1.1E-12 2.5E-17 95.0 11.9 94 43-148 3-99 (110)
96 cd08374 C2F_Ferlin C2 domain s 99.5 5.7E-13 1.2E-17 99.9 10.4 111 41-151 1-125 (133)
97 PLN02230 phosphoinositide phos 99.5 6.6E-13 1.4E-17 120.6 12.1 138 7-165 436-584 (598)
98 PLN02952 phosphoinositide phos 99.5 1.1E-12 2.3E-17 119.3 13.5 138 7-165 437-585 (599)
99 cd08686 C2_ABR C2 domain in th 99.4 1.3E-12 2.8E-17 95.8 10.5 83 42-146 1-92 (118)
100 PF00168 C2: C2 domain; Inter 99.4 2E-12 4.4E-17 88.2 11.0 85 42-141 1-85 (85)
101 PLN02222 phosphoinositide phos 99.4 1.6E-12 3.5E-17 117.8 13.2 138 7-165 419-567 (581)
102 PLN02228 Phosphoinositide phos 99.4 4.8E-12 1E-16 114.5 14.3 138 7-165 401-547 (567)
103 KOG0169|consensus 99.4 2.8E-12 6.1E-17 117.1 9.3 138 8-165 586-730 (746)
104 PLN03200 cellulose synthase-in 99.3 7.8E-12 1.7E-16 125.5 11.6 109 37-164 1977-2085(2102)
105 smart00239 C2 Protein kinase C 99.3 6.7E-11 1.5E-15 82.4 11.7 97 42-153 2-98 (101)
106 cd00030 C2 C2 domain. The C2 d 99.3 7.2E-11 1.6E-15 81.7 11.2 101 42-159 1-102 (102)
107 KOG1264|consensus 99.3 3E-11 6.5E-16 110.7 9.8 126 7-150 1033-1163(1267)
108 KOG2059|consensus 99.2 2.6E-11 5.7E-16 109.7 8.1 115 39-172 4-120 (800)
109 KOG2059|consensus 99.2 1.1E-10 2.3E-15 105.9 9.6 180 8-193 98-281 (800)
110 KOG1011|consensus 99.2 7.5E-11 1.6E-15 106.2 7.6 120 39-186 294-424 (1283)
111 KOG0905|consensus 99.1 7.8E-11 1.7E-15 111.4 6.6 120 28-161 1514-1635(1639)
112 PLN02270 phospholipase D alpha 99.1 1.1E-09 2.3E-14 102.1 13.5 125 39-190 7-150 (808)
113 KOG1328|consensus 99.0 4.6E-10 1E-14 102.1 3.9 109 27-148 934-1048(1103)
114 COG5038 Ca2+-dependent lipid-b 98.9 1.2E-08 2.5E-13 97.3 10.5 107 38-161 1038-1144(1227)
115 COG5038 Ca2+-dependent lipid-b 98.8 3.3E-08 7.1E-13 94.3 11.1 96 38-151 434-531 (1227)
116 KOG1013|consensus 98.8 9.1E-09 2E-13 86.4 6.4 120 24-158 217-338 (362)
117 KOG1265|consensus 98.7 1.7E-08 3.6E-13 93.8 6.1 126 4-151 666-798 (1189)
118 KOG1011|consensus 98.7 1.3E-07 2.8E-12 85.7 10.2 130 23-165 1104-1241(1283)
119 KOG1328|consensus 98.7 3.9E-09 8.4E-14 96.3 0.4 125 39-186 113-301 (1103)
120 KOG1031|consensus 98.5 4.1E-07 9E-12 81.7 8.8 123 40-187 3-137 (1169)
121 cd08684 C2A_Tac2-N C2 domain f 98.5 1.7E-07 3.7E-12 64.7 4.4 102 42-159 1-103 (103)
122 cd08689 C2_fungal_Pkc1p C2 dom 98.4 1.1E-06 2.3E-11 63.0 7.5 85 42-149 1-88 (109)
123 PLN02352 phospholipase D epsil 98.4 3.4E-06 7.4E-11 78.8 11.9 102 39-165 9-116 (758)
124 KOG2060|consensus 98.4 2.4E-07 5.2E-12 79.2 3.8 122 26-165 257-383 (405)
125 KOG1013|consensus 98.3 6.8E-08 1.5E-12 81.3 -0.8 112 27-150 80-193 (362)
126 KOG1326|consensus 98.3 4E-07 8.7E-12 85.7 2.7 127 27-164 192-320 (1105)
127 cd08683 C2_C2cd3 C2 domain fou 98.1 3E-06 6.4E-11 62.7 4.2 97 61-159 33-143 (143)
128 KOG1326|consensus 98.1 4.1E-06 8.9E-11 79.1 4.7 92 37-146 610-703 (1105)
129 KOG3837|consensus 98.0 2.5E-06 5.4E-11 73.9 0.9 140 31-184 358-503 (523)
130 PLN02964 phosphatidylserine de 97.3 0.00049 1.1E-08 64.0 6.4 110 31-164 45-156 (644)
131 KOG1327|consensus 97.3 0.0015 3.3E-08 58.9 8.9 114 24-149 118-236 (529)
132 cd08398 C2_PI3K_class_I_alpha 97.0 0.044 9.5E-07 42.3 13.1 92 40-147 8-106 (158)
133 PF12416 DUF3668: Cep120 prote 96.5 0.048 1E-06 47.2 11.3 107 42-162 2-114 (340)
134 cd08693 C2_PI3K_class_I_beta_d 96.4 0.045 9.8E-07 42.9 9.6 94 40-147 8-120 (173)
135 cd08380 C2_PI3K_like C2 domain 96.1 0.07 1.5E-06 40.8 9.2 95 40-147 8-107 (156)
136 cd08397 C2_PI3K_class_III C2 d 96.0 0.041 9E-07 42.5 7.8 78 58-147 27-107 (159)
137 PF10358 NT-C2: N-terminal C2 95.6 0.63 1.4E-05 34.7 13.9 110 39-161 6-120 (143)
138 PF15627 CEP76-C2: CEP76 C2 do 95.6 0.17 3.6E-06 39.0 9.4 108 37-149 6-117 (156)
139 cd04012 C2A_PI3K_class_II C2 d 95.3 0.14 3.1E-06 39.9 8.3 97 39-147 7-119 (171)
140 cd08695 C2_Dock-B C2 domains f 94.1 1 2.3E-05 35.7 10.6 59 75-146 53-113 (189)
141 PF00792 PI3K_C2: Phosphoinosi 93.5 0.75 1.6E-05 34.5 8.6 58 78-147 23-85 (142)
142 cd08399 C2_PI3K_class_I_gamma 93.5 2.7 5.8E-05 33.1 11.8 76 41-129 11-88 (178)
143 cd08694 C2_Dock-A C2 domains f 93.4 1.7 3.8E-05 34.7 10.7 58 75-145 53-114 (196)
144 PF14429 DOCK-C2: C2 domain in 92.8 0.87 1.9E-05 35.7 8.3 59 75-146 59-120 (184)
145 smart00142 PI3K_C2 Phosphoinos 92.7 1.1 2.4E-05 31.6 7.9 76 42-130 13-92 (100)
146 cd08679 C2_DOCK180_related C2 88.5 2.3 4.9E-05 33.3 7.0 56 78-146 55-115 (178)
147 cd08687 C2_PKN-like C2 domain 84.7 3.9 8.4E-05 28.7 5.5 64 60-146 8-71 (98)
148 cd08697 C2_Dock-D C2 domains f 84.5 5.7 0.00012 31.5 7.2 59 75-146 56-123 (185)
149 PF11618 DUF3250: Protein of u 83.9 2.7 5.8E-05 30.2 4.8 94 73-185 9-104 (107)
150 cd08696 C2_Dock-C C2 domains f 83.8 5.8 0.00013 31.2 7.0 59 75-146 54-118 (179)
151 KOG1452|consensus 78.8 10 0.00023 32.6 7.2 81 37-136 48-130 (442)
152 PF15625 CC2D2AN-C2: CC2D2A N- 77.5 19 0.0004 27.9 7.9 85 59-162 35-125 (168)
153 KOG1327|consensus 71.9 12 0.00027 34.3 6.3 60 76-150 42-105 (529)
154 PF14186 Aida_C2: Cytoskeletal 69.9 47 0.001 25.3 8.6 99 36-150 9-115 (147)
155 KOG0906|consensus 63.7 50 0.0011 31.4 8.4 75 59-146 45-123 (843)
156 KOG1329|consensus 60.1 52 0.0011 32.2 8.1 85 62-164 139-224 (887)
157 PF14924 DUF4497: Protein of u 52.6 34 0.00074 24.5 4.6 65 117-190 27-108 (112)
158 PHA03351 tegument protein UL16 36.6 1.7E+02 0.0038 22.8 6.4 30 114-143 55-84 (235)
159 PF10409 PTEN_C2: C2 domain of 34.2 1.8E+02 0.0039 21.0 8.9 93 41-148 5-98 (134)
160 cd05137 RasGAP_CLA2_BUD2 CLA2/ 31.7 43 0.00094 29.8 2.8 30 136-165 1-31 (395)
161 PF07162 B9-C2: Ciliary basal 26.5 3E+02 0.0064 21.1 10.6 95 45-158 7-117 (168)
162 KOG0904|consensus 25.9 2.7E+02 0.0058 27.8 6.9 75 39-128 342-421 (1076)
163 PTZ00447 apical membrane antig 24.8 4.9E+02 0.011 23.0 10.2 114 27-165 40-162 (508)
164 PF01060 DUF290: Transthyretin 22.0 1.6E+02 0.0034 19.5 3.6 25 119-143 12-36 (80)
165 KOG3508|consensus 21.1 45 0.00098 32.8 1.0 128 9-165 80-207 (932)
No 1
>cd08677 C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain
Probab=99.92 E-value=5e-24 Score=156.28 Aligned_cols=117 Identities=24% Similarity=0.489 Sum_probs=105.5
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECC-CCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPD-KKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE 105 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~-~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~ 105 (207)
++.++++.|++..+.|+|+|++|++|+ ..|.+||||++.+.++ +..+++|++++++.||.|||+|.|.
T Consensus 1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~-------- 69 (118)
T cd08677 1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFP-------- 69 (118)
T ss_pred CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEe--------
Confidence 357899999999999999999999998 2466999999999864 3467899999999999999999999
Q ss_pred eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L 159 (207)
++.+++....|.|.|||+++++++++||++.+++.++..+....+|.+|
T Consensus 70 -----v~~~~l~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~ 118 (118)
T cd08677 70 -----LPEEESLDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL 118 (118)
T ss_pred -----CCHHHhCCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence 7888889999999999999999999999999999998777788899765
No 2
>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety
Probab=99.90 E-value=5.9e-23 Score=152.97 Aligned_cols=122 Identities=42% Similarity=0.606 Sum_probs=109.3
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLN 102 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~ 102 (207)
.|++++++.|++..+.|.|+|++|+||+..+.. |.+||||++.+.|+.. .+++|++++++.+|.|||+|.|.
T Consensus 1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~----- 75 (125)
T cd08393 1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYK----- 75 (125)
T ss_pred CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEE-----
Confidence 378899999999999999999999999998865 8999999999987653 46899999999999999999999
Q ss_pred ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
++..++....|.|+|||++.++++++||++.++|.++........||+|+
T Consensus 76 --------v~~~~l~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~ 125 (125)
T cd08393 76 --------VEREELPTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ 125 (125)
T ss_pred --------CCHHHhCCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence 55555667899999999999999999999999999998877888999985
No 3
>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2
Probab=99.89 E-value=3.2e-22 Score=149.03 Aligned_cols=121 Identities=35% Similarity=0.572 Sum_probs=108.3
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCC-CCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR 103 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~-~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~ 103 (207)
|++++++.|++..+.|.|+|++|+||+..+. .+.+||||++.+.|++. .+++|++++++.+|.|||+|.|.
T Consensus 2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~------ 75 (125)
T cd04029 2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYS------ 75 (125)
T ss_pred cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEE------
Confidence 6789999999999999999999999998765 47899999999987653 47899999999999999999998
Q ss_pred cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
++..++....|.|.|||++.++++++||++.++|.++........|++|+
T Consensus 76 -------i~~~~l~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~ 125 (125)
T cd04029 76 -------ISHSQLETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH 125 (125)
T ss_pred -------CCHHHhCCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence 55455566789999999999999999999999999999888899999984
No 4
>cd08680 C2_Kibra C2 domain found in Human protein Kibra. Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom
Probab=99.89 E-value=1.4e-22 Score=150.66 Aligned_cols=119 Identities=28% Similarity=0.429 Sum_probs=107.9
Q ss_pred CceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 28 ~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
++++++.|++..+.|.|+|++|+||...+..+.+||||++.+.|+.. .+++|++++.+.+|.|||+|.|+
T Consensus 2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~------- 74 (124)
T cd08680 2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVP------- 74 (124)
T ss_pred eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEE-------
Confidence 46899999999999999999999999988888999999999998773 47899999999999999999999
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc-cccceEEEc
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWREL 159 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~-~~~~~w~~L 159 (207)
++.+++....|.|.||+++..+++++||++.++|.++... ....+||.|
T Consensus 75 ------v~~~~L~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l 124 (124)
T cd08680 75 ------ISSTKLYQKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL 124 (124)
T ss_pred ------CCHHHhhcCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence 6778888899999999999999999999999999999655 457789976
No 5
>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids
Probab=99.89 E-value=2.9e-22 Score=149.84 Aligned_cols=122 Identities=31% Similarity=0.460 Sum_probs=107.8
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLN 102 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~ 102 (207)
+|++++++.|++..+.|.|+|.+|+||+..+.. |.+||||++.+.|... .+++|++++++.+|.|||+|.|.
T Consensus 1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~----- 75 (128)
T cd08392 1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYV----- 75 (128)
T ss_pred CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEE-----
Confidence 478999999999999999999999999998865 8999999999987653 47799999999999999999999
Q ss_pred ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc---cccceEEEcc
Q psy17645 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA---QTIEEWRELQ 160 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~---~~~~~w~~L~ 160 (207)
++..++....|.+.||+.+.++++++||++.++|.++... .....||+|.
T Consensus 76 --------v~~~~l~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~ 128 (128)
T cd08392 76 --------VEADLLSSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN 128 (128)
T ss_pred --------cCHHHhCCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence 5556667789999999999999999999999999998654 3566899984
No 6
>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv
Probab=99.89 E-value=4.4e-22 Score=147.73 Aligned_cols=122 Identities=43% Similarity=0.767 Sum_probs=110.8
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE 105 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~ 105 (207)
.|..++++.|++..+.|.|+|++|++|+..+..+.+|||+++.+.+.+...++|++++++.+|.|+|+|.|.
T Consensus 2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~-------- 73 (124)
T cd08387 2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFE-------- 73 (124)
T ss_pred CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEe--------
Confidence 478899999999999999999999999999888999999999998766678999999999999999999998
Q ss_pred eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
++..++....|.|+|||++.++++++||++.++|.++..+.....|++|+
T Consensus 74 -----v~~~~l~~~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08387 74 -----VPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ 123 (124)
T ss_pred -----CCHHHhCCCEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence 45444556789999999999999999999999999998888889999986
No 7
>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut
Probab=99.89 E-value=3.8e-22 Score=148.05 Aligned_cols=118 Identities=39% Similarity=0.676 Sum_probs=106.2
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|++++++.|+ .+.|.|.|++|++|+..+ .+.+||||++.+.|+. ..+++|++++++.+|.|||+|.|++
T Consensus 2 G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~------ 72 (122)
T cd08381 2 GQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDG------ 72 (122)
T ss_pred CeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEec------
Confidence 6788999999 899999999999999998 8899999999998754 3478999999999999999999984
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L 159 (207)
.+..++....|.|+|||++.++++++||++.++|.++..++....||.|
T Consensus 73 ------~~~~~l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L 121 (122)
T cd08381 73 ------LPVEDLQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPL 121 (122)
T ss_pred ------CChHHhCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEEC
Confidence 3656667789999999999999999999999999999888778899987
No 8
>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy
Probab=99.89 E-value=1e-22 Score=154.00 Aligned_cols=131 Identities=23% Similarity=0.275 Sum_probs=116.4
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFL 101 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~--~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~ 101 (207)
+|++.++|.|.+..++|.|.|++|+||...+. .+.+||||++.+.+++. .+++|++++.+.+|.|||+|.|.
T Consensus 1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~---- 76 (138)
T cd08407 1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFE---- 76 (138)
T ss_pred CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEE----
Confidence 47899999999999999999999999998873 34589999999987654 37799999999999999999999
Q ss_pred cccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++.+++....|.|+|||++.++++++||++.+++.. .+....+|.++...+......||
T Consensus 77 ---------v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml~~p~~~va~WH 135 (138)
T cd08407 77 ---------LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEMLDNPRRQIAMWH 135 (138)
T ss_pred ---------CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHHhCCCCchhEEE
Confidence 677777888999999999999999999999999975 56778899999988888888886
No 9
>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence
Probab=99.89 E-value=6.5e-22 Score=147.96 Aligned_cols=125 Identities=44% Similarity=0.693 Sum_probs=109.6
Q ss_pred CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645 25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNR 103 (207)
Q Consensus 25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~ 103 (207)
++|..++++.|+...+.|+|+|++|+||+..+.. +.+||||++.+.+...++.+|++++++.+|.|||+|.|..
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~----- 75 (128)
T cd08388 1 KLGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYG----- 75 (128)
T ss_pred CCeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcc-----
Confidence 3588999999999999999999999999998875 8899999999987767788999999999999999999942
Q ss_pred cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc--cccceEEEccc
Q psy17645 104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS 161 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~--~~~~~w~~L~~ 161 (207)
++..++....|.+.||+++.++++++||++.++|.++... .....|.+|++
T Consensus 76 -------~~~~~~~~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~ 128 (128)
T cd08388 76 -------IPYNQLQDLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP 128 (128)
T ss_pred -------cCHHHhCCCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence 4444555678999999999999999999999999998655 67889999864
No 10
>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and
Probab=99.89 E-value=7.2e-22 Score=146.50 Aligned_cols=122 Identities=71% Similarity=1.165 Sum_probs=110.0
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE 105 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~ 105 (207)
.|+.++++.|+...+.|.|+|++|+||+..+..+.+||||++.+.+...+.++|++++++.+|.|+|+|.|.
T Consensus 2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~-------- 73 (124)
T cd08385 2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFK-------- 73 (124)
T ss_pred ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEe--------
Confidence 478899999999999999999999999998888899999999998766678899999999999999999999
Q ss_pred eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
++..++....|.|+|||++.++++++||++.++|.++..+....+|++|.
T Consensus 74 -----i~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~ 123 (124)
T cd08385 74 -----VPYSELGNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE 123 (124)
T ss_pred -----CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence 44344456789999999999889999999999999998888889999986
No 11
>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.88 E-value=5.1e-22 Score=147.72 Aligned_cols=123 Identities=41% Similarity=0.602 Sum_probs=112.1
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE 105 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~ 105 (207)
.|+.++++.|++...+|.|+|++|+||+..+..+.+||||++.+.|...++++|++++. .+|.|||+|.|+.
T Consensus 2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~------- 73 (124)
T cd08389 2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSR------- 73 (124)
T ss_pred CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECC-------
Confidence 47889999999999999999999999999988889999999998887778899999888 9999999999984
Q ss_pred eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~ 161 (207)
++..++....|.+.||+++.+++++++|++.++|.++..+.....|++|++
T Consensus 74 -----i~~~~l~~~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p 124 (124)
T cd08389 74 -----VEPEELNNMALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP 124 (124)
T ss_pred -----CCHHHhccCEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence 555667788999999999999999999999999999988888899999974
No 12
>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl
Probab=99.88 E-value=2.2e-22 Score=151.95 Aligned_cols=130 Identities=28% Similarity=0.395 Sum_probs=116.3
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|++.+++.|.+...+|.|+|++|+||+..+..+.+||||++.+.|++.+ +.+|++++++.+|.|||+|.|.
T Consensus 2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~------- 74 (136)
T cd08406 2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFS------- 74 (136)
T ss_pred cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEE-------
Confidence 6789999999999999999999999999988899999999999876543 6789999999999999999999
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++..++....|.|+||+++.++++++||++.++... .+...++|.++.+.++.....||
T Consensus 75 ------v~~~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~~~~~~v~~WH 133 (136)
T cd08406 75 ------VPAIVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLASLRKPVAMWH 133 (136)
T ss_pred ------CCHHHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHHCCCCeeeEee
Confidence 666677889999999999999999999999998664 56778899999988888888886
No 13
>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins. KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1
Probab=99.88 E-value=1.7e-21 Score=144.97 Aligned_cols=123 Identities=35% Similarity=0.641 Sum_probs=109.5
Q ss_pred CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645 25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLN 102 (207)
Q Consensus 25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~ 102 (207)
|.|+.++++.|++..+.|+|+|++|+||+..+..+.+||||++.+.+.+ ...++|++++++.+|.|+|+|.|.
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~----- 75 (127)
T cd04030 1 PLGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFP----- 75 (127)
T ss_pred CCeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEe-----
Confidence 6789999999999999999999999999999888999999999997654 457899999999999999999998
Q ss_pred ccceeccCcccCcCCCceEEEEEEecCCC--CCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRF--SKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~--~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
++..++....+.+.||+.+.+ +++++||++.++|.++..+....+||.|+
T Consensus 76 --------i~~~~l~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~ 127 (127)
T cd04030 76 --------VSLEELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127 (127)
T ss_pred --------cCHHHhcCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence 454555667999999999875 67899999999999998888889999984
No 14
>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.88 E-value=2.5e-21 Score=147.56 Aligned_cols=129 Identities=32% Similarity=0.469 Sum_probs=110.4
Q ss_pred cccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEE
Q psy17645 19 VLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFV 95 (207)
Q Consensus 19 ~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~ 95 (207)
...+....|+.++++.| ..+.|.|.|++|+||...+ ..|.+||||++.+.+++. .+.+|++++++.+|.|||+|.
T Consensus 10 ~~~~~~~~G~l~lsl~y--~~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~ 87 (146)
T cd04028 10 QVLASPSMGDIQLGLYD--KKGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLV 87 (146)
T ss_pred ccccCCCcceEEEEEEe--CCCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEE
Confidence 34445567999999999 4789999999999999864 468899999999987654 488999999999999999999
Q ss_pred EeeecccccceeccCcccCcCCCceEEEEEE-ecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 96 FKVSFLNRSEVFEQGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 96 f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~-d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
|.+ + +....|.++|| +++.+.++++||++.++|+++..+.....||.|.+....
T Consensus 88 f~v-------------~---l~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~~~~ 142 (146)
T cd04028 88 FDV-------------S---PTGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPTSSL 142 (146)
T ss_pred EEE-------------c---CCCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCcccc
Confidence 995 3 36689999999 578888899999999999999888888899999975544
No 15
>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.88 E-value=1.6e-21 Score=144.79 Aligned_cols=124 Identities=45% Similarity=0.864 Sum_probs=110.9
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE 105 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~ 105 (207)
.|++++++.|++..+.|.|+|++|+||+..+..+.+|||+++.+.+.+.+..+|++++++.+|.|+|+|.|..
T Consensus 2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~------- 74 (125)
T cd08386 2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEG------- 74 (125)
T ss_pred ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcc-------
Confidence 4789999999999999999999999999988888999999999977666788999999999999999999974
Q ss_pred eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~ 161 (207)
.+.+.+....|.++|||++..+++++||++.+++.++..+.....|++|.+
T Consensus 75 -----~~~~~l~~~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~ 125 (125)
T cd08386 75 -----FPYEKLQQRVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP 125 (125)
T ss_pred -----cCHHHhCCCEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence 444445567899999999998899999999999999988888899999864
No 16
>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16. Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle
Probab=99.87 E-value=6.7e-22 Score=149.74 Aligned_cols=132 Identities=28% Similarity=0.457 Sum_probs=115.7
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLN 102 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~ 102 (207)
++++++++.|++..++|.|+|++|+||...+..+.+||||++.+.|... .+++|++++++.+|.|||+|.|+
T Consensus 1 ~~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~----- 75 (138)
T cd08408 1 VPELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQ----- 75 (138)
T ss_pred CCeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEE-----
Confidence 3678999999999999999999999999998889999999999987543 26799999999999999999999
Q ss_pred ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++.+++....|.|.||+.+.++++++||++.+++.... .....+|+.+...++.....||
T Consensus 76 --------i~~~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~-~~~~~hW~~~l~~~~~~v~~WH 135 (138)
T cd08408 76 --------VALFQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSG-EEEEEHWNEMKESKGQQVCRWH 135 (138)
T ss_pred --------CCHHHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCC-chHHHHHHHHHhCCCCEEeEee
Confidence 56667778899999999999999999999999987542 2346799999998888888886
No 17
>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into
Probab=99.87 E-value=5e-21 Score=141.52 Aligned_cols=120 Identities=38% Similarity=0.636 Sum_probs=106.4
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR 103 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~ 103 (207)
|++++++.|+...+.|.|+|++|+||+..+ ..+.+||||++.+.+... .+.+|++++++.+|.|+|+|.|.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~------ 74 (123)
T cd08521 1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYH------ 74 (123)
T ss_pred CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEe------
Confidence 578899999999999999999999999888 678999999999876543 47899999999999999999998
Q ss_pred cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645 104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L 159 (207)
++..++....|.|+|||.+.++++++||++.++|.++..+....+||+|
T Consensus 75 -------i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l 123 (123)
T cd08521 75 -------ISKSQLETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL 123 (123)
T ss_pred -------CCHHHhCCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence 4544455678999999999988999999999999999878888999987
No 18
>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id
Probab=99.86 E-value=1.9e-21 Score=147.05 Aligned_cols=132 Identities=27% Similarity=0.360 Sum_probs=117.3
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|++++++.|++..++|.|+|++|+||...+ .+.+||||++.+.+... .+++|++++++.+|.|||.|.|.
T Consensus 2 G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~------- 73 (137)
T cd08409 2 GDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFK------- 73 (137)
T ss_pred cEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEE-------
Confidence 778999999999999999999999999888 78899999999986543 36799999999999999999999
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEee
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYL 172 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l 172 (207)
++.+++....|.|+||+.+..+++++||++.++......+...++|.++...+++...+||.
T Consensus 74 ------i~~~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~ 135 (137)
T cd08409 74 ------VTSRQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHA 135 (137)
T ss_pred ------CCHHHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEe
Confidence 56666777899999999998899999999999977666778889999999988888888874
No 19
>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat
Probab=99.86 E-value=1.3e-20 Score=139.31 Aligned_cols=122 Identities=39% Similarity=0.699 Sum_probs=108.1
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSE 105 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~ 105 (207)
|+..+++.|+...+.|.|+|++|+||+..+ ..+.+||||++.+.+++....+|++++++.+|.|+|.|.|.
T Consensus 1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~-------- 72 (123)
T cd08390 1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQ-------- 72 (123)
T ss_pred CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEE--------
Confidence 567899999999999999999999999987 67889999999997766667899999999999999999998
Q ss_pred eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~ 161 (207)
++...+....|.|.|||.+..+++++||++.++|.++........|++|.+
T Consensus 73 -----i~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~ 123 (123)
T cd08390 73 -----VSFKELQRRTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP 123 (123)
T ss_pred -----cCHHHhcccEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence 444444456899999999988889999999999999988888889999863
No 20
>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s
Probab=99.85 E-value=6.6e-21 Score=143.74 Aligned_cols=132 Identities=33% Similarity=0.509 Sum_probs=115.4
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR 103 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~ 103 (207)
+|++.+++.|++..+.|.|+|++|+||+..+..|.+||||++.+.+.+. ...+|++++++.+|.|+|+|.|.
T Consensus 1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~------ 74 (136)
T cd08404 1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFD------ 74 (136)
T ss_pred CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEE------
Confidence 4788999999999999999999999999998889999999999975443 36789999999999999999999
Q ss_pred cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEee
Q psy17645 104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYL 172 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l 172 (207)
++........+.|+|||++.++++++||++.+++.. .+....+|++|.+.+++....||.
T Consensus 75 -------v~~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~~~~~~i~~Wh~ 134 (136)
T cd08404 75 -------IPSEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCNPPRRQIAEWHM 134 (136)
T ss_pred -------CCHHHhCCCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHhCCCCeeeEEEe
Confidence 554455567899999999999999999999999988 456788999999888888888863
No 21
>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho
Probab=99.85 E-value=8.3e-21 Score=142.36 Aligned_cols=129 Identities=13% Similarity=0.241 Sum_probs=110.0
Q ss_pred CceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCC-CCeEecEEEEeeeccccc
Q psy17645 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTL-NPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 28 ~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~-~P~w~e~~~f~~~~~~~~ 104 (207)
+..++++|.+..++|+|.|++|+||+.....+..||||++.+.+.++ .+++|++++++. +|.|||+|.|+
T Consensus 2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fd------- 74 (135)
T cd08692 2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFP------- 74 (135)
T ss_pred eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEe-------
Confidence 46899999999999999999999999876677789999999976554 378999999985 69999999999
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++.++ ....+.+++||++..+++++||++.++..+. .+.+.++|.++...+.+....||
T Consensus 75 ------v~~~~-~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~~~pr~~ia~WH 133 (135)
T cd08692 75 ------VTQQE-HGIQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTIANPEKVVTKWH 133 (135)
T ss_pred ------CCchh-heeEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHHhCCCCeeeEee
Confidence 55444 4578999999999999999999999998763 44567899999888888888886
No 22
>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai
Probab=99.85 E-value=1.1e-20 Score=141.84 Aligned_cols=128 Identities=31% Similarity=0.521 Sum_probs=111.7
Q ss_pred ceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccce
Q psy17645 29 PEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSEV 106 (207)
Q Consensus 29 ~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~ 106 (207)
+++++.|+...+.|.|+|++|++|+..+..+.+||||++.+.+++. ...+|++++++.+|.|||+|.|.
T Consensus 2 i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~--------- 72 (133)
T cd08384 2 ILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYD--------- 72 (133)
T ss_pred EEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEE---------
Confidence 5789999999999999999999999998889999999999976432 47899999999999999999998
Q ss_pred eccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 107 FEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 107 ~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++..++....|.|+|||++..+++++||++.+++.. .+....+|+++.+.+++....||
T Consensus 73 ----~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~~~~~~~~~wh 131 (133)
T cd08384 73 ----IKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLKNPDKKIEAWH 131 (133)
T ss_pred ----CCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHhCCCCChheee
Confidence 444445567899999999988889999999999985 45567899999988888888875
No 23
>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins. RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as
Probab=99.85 E-value=3.4e-20 Score=137.46 Aligned_cols=121 Identities=42% Similarity=0.625 Sum_probs=104.0
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|+.++++.|++..+.|.|+|++|++|...+..+.+||||++.+.+.. ...++|++++++.+|.|+|+|.|.+
T Consensus 3 G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~------ 76 (125)
T cd04031 3 GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSN------ 76 (125)
T ss_pred EEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcc------
Confidence 77899999999999999999999999999888899999999996543 2577999999999999999999984
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
.+..++....|.|+|||++..+++++||++.++|.+. ......+||+|+
T Consensus 77 ------~~~~~l~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~-~~~~~~~W~~L~ 125 (125)
T cd04031 77 ------VRRETLKERTLEVTVWDYDRDGENDFLGEVVIDLADA-LLDDEPHWYPLQ 125 (125)
T ss_pred ------cCHHHhCCCEEEEEEEeCCCCCCCcEeeEEEEecccc-cccCCcceEECc
Confidence 3434445679999999999988899999999999983 334557899985
No 24
>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves
Probab=99.84 E-value=1.5e-20 Score=141.79 Aligned_cols=131 Identities=34% Similarity=0.597 Sum_probs=113.6
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNR 103 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~ 103 (207)
+|+..+++.|.+..+.|.|+|++|+||...+..+.+||||++.+.+.+. ...+|++++++.+|.|||.|.|.
T Consensus 1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~------ 74 (136)
T cd08405 1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFN------ 74 (136)
T ss_pred CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEe------
Confidence 3778999999999999999999999999988889999999999865432 46789999999999999999998
Q ss_pred cceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 104 SEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++.+.+....|.|+|||++.++++++||++.+++.+. +....+|+++...++....+||
T Consensus 75 -------i~~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~~~~~~~~~wh 133 (136)
T cd08405 75 -------IPLERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLSKPRQPVAQWH 133 (136)
T ss_pred -------CCHHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHhCCCCchhEEE
Confidence 4444445578999999999999999999999999875 5667899999998888888886
No 25
>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I. Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member
Probab=99.84 E-value=4.9e-20 Score=137.20 Aligned_cols=120 Identities=29% Similarity=0.496 Sum_probs=98.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc---CcCCC
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY---ADAMN 118 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~---~~~~~ 118 (207)
++|+|++|+||+..+..|.+||||++.+ +..+++|++++.+.+|.|||.|.|.+ +. ++...
T Consensus 1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l---~~~~~kT~v~~~t~nP~Wne~f~F~v-------------~~~~~~~~~~ 64 (126)
T cd08682 1 VQVTVLQARGLLCKGKSGTNDAYVIIQL---GKEKYSTSVKEKTTSPVWKEECSFEL-------------PGLLSGNGNR 64 (126)
T ss_pred CEEEEEECcCCcCCCCCcCCCceEEEEE---CCeeeeeeeecCCCCCEeCceEEEEe-------------cCcccCCCcC
Confidence 5799999999999988899999999998 35678999999999999999999984 32 22356
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEeceeec--cccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALCQID--LAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK 183 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~--~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~ 183 (207)
..|.+.|||++.++++++||++.++|.++. .+....+|++|.+..+.. ....|+|.+.+
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~------~~~~Gei~l~~ 125 (126)
T cd08682 65 ATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKD------DKERGEIEVDI 125 (126)
T ss_pred CEEEEEEEEccccCCCceeEEEEEEHHHhhccCCCcccEEEECcCCCCCC------ccccceEEEEe
Confidence 789999999999888999999999999986 456678999998644321 22358888743
No 26
>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:
Probab=99.84 E-value=2.8e-20 Score=140.28 Aligned_cols=130 Identities=32% Similarity=0.584 Sum_probs=113.0
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|+..+++.|.+..+.|.|.|++|++|+..+..+.+||||++.+.+.+. ..++|++++++.+|.|+|.|.|.
T Consensus 2 G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~------- 74 (136)
T cd08402 2 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFE------- 74 (136)
T ss_pred cEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEE-------
Confidence 778999999999999999999999999998889999999999865333 46789999999999999999999
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++..++....|.|+|||++.++++++||++.+++.. .+....+|+++...+......||
T Consensus 75 ------i~~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~--~~~~~~~W~~~~~~~~~~~~~wh 133 (136)
T cd08402 75 ------VPFEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNA--TGAELRHWSDMLASPRRPIAQWH 133 (136)
T ss_pred ------CCHHHhCCCEEEEEEEeCCCCCCCceeEEEEECCcc--CChHHHHHHHHHhCCCCeeeEEE
Confidence 444445556899999999999999999999999976 45677899999988888788775
No 27
>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind
Probab=99.84 E-value=2.8e-20 Score=139.93 Aligned_cols=130 Identities=35% Similarity=0.523 Sum_probs=112.2
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|+..+++.|.+..+.|+|+|++|++|+..+..+.+||||++.+.+.+. ...+|++++++.+|.|+|+|.|.
T Consensus 1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~------- 73 (134)
T cd08403 1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFD------- 73 (134)
T ss_pred CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEE-------
Confidence 567899999999999999999999999998889999999999865443 46789999999999999999998
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++...+....|.|+|||++.++++++||++.+++. ..+....+|+++...++.....||
T Consensus 74 ------i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~--~~~~~~~~w~~~~~~~~~~~~~wh 132 (134)
T cd08403 74 ------VPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN--ADGQGREHWNEMLANPRKPIAQWH 132 (134)
T ss_pred ------CCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC--CCCchHHHHHHHHHCCCCeeeEee
Confidence 44444555679999999999999999999999987 345667899999988888888775
No 28
>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family. This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho
Probab=99.84 E-value=6.7e-20 Score=135.42 Aligned_cols=115 Identities=28% Similarity=0.431 Sum_probs=95.9
Q ss_pred CceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSE 105 (207)
Q Consensus 28 ~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~ 105 (207)
+.++++.| ..+.|.|+|++|+||...+ .+.+||||++.+.|+.. .+++|++++++.+|.|||+|.|.
T Consensus 2 ~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~-------- 70 (119)
T cd08685 2 QLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFD-------- 70 (119)
T ss_pred EEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEE--------
Confidence 34445554 7899999999999999887 78999999999987654 36799999999999999999998
Q ss_pred eeccCcccCcCCCceEEEEEEecCCCC-CCceeEEEEEeceeeccccccceEEEc
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRFS-KHDQIGEVKVALCQIDLAQTIEEWREL 159 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~-~~~~lG~~~v~L~~l~~~~~~~~w~~L 159 (207)
++..+. ...+.|+||+.+... ++++||++.++|.++..+....+||.|
T Consensus 71 -----v~~~~~-~~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l 119 (119)
T cd08685 71 -----VNERDY-QKRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL 119 (119)
T ss_pred -----cChHHh-CCEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence 443333 346889999998765 468999999999999877788999976
No 29
>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin
Probab=99.83 E-value=6.1e-20 Score=137.45 Aligned_cols=130 Identities=36% Similarity=0.506 Sum_probs=113.4
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|++++++.|++..++|.|.|++|+||+..+..+.+||||++.+.+... ..++|+++.++.+|.|+|+|.|.
T Consensus 1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~------- 73 (134)
T cd00276 1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFD------- 73 (134)
T ss_pred CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEE-------
Confidence 578899999999999999999999999988788999999999976543 36799999999999999999999
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++...+....|.|+|||.+..+++++||++.+++.+ .+...++|++|.+.+++....||
T Consensus 74 ------i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~~~~~~~wh 132 (134)
T cd00276 74 ------VPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASPRKPIARWH 132 (134)
T ss_pred ------CCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCCCCceEEee
Confidence 444444467899999999988889999999999999 66788999999998888777775
No 30
>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-
Probab=99.83 E-value=5.7e-20 Score=138.63 Aligned_cols=131 Identities=30% Similarity=0.472 Sum_probs=110.9
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|++.+++.|.+..+.|.|+|++|++|+..+..+.+||||++.+.+... ..++|++++++.+|.|||+|.|.
T Consensus 1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~------- 73 (135)
T cd08410 1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFK------- 73 (135)
T ss_pred CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEe-------
Confidence 578899999999999999999999999998889999999999865332 46799999999999999999999
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
++.+++....+.|+|||++..+++++||++.++..... +....+|+.|.+.++.....||
T Consensus 74 ------i~~~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~-~~~~~~W~~l~~~~~~~~~~wh 133 (135)
T cd08410 74 ------VPQEELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSG-PSETNHWRRMLNSQRTAVEQWH 133 (135)
T ss_pred ------CCHHHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCC-chHHHHHHHHHhCCCCEeeEee
Confidence 55555556689999999999899999999987754332 2346899999998888888886
No 31
>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4. All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin
Probab=99.82 E-value=2e-19 Score=139.74 Aligned_cols=123 Identities=37% Similarity=0.563 Sum_probs=104.7
Q ss_pred CCCceeEEEEEC------------cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEe
Q psy17645 26 IFKPEQTLEYDF------------NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFN 91 (207)
Q Consensus 26 ~~~~~~~l~y~~------------~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~ 91 (207)
+|++.+++.|.+ ..+.|.|+|++|+||+..+..+.+||||++.+.+.. ...++|++++++.+|.||
T Consensus 1 ~G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~Wn 80 (162)
T cd04020 1 RGELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWN 80 (162)
T ss_pred CceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCC
Confidence 378899999999 448999999999999999888999999999987643 357899999999999999
Q ss_pred cEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 92 e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
|.|.|.+ .+..++....|.|.|||++.++++++||++.+++.++........|+++.
T Consensus 81 E~f~f~~------------~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~ 137 (162)
T cd04020 81 HTFVYDG------------VSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDST 137 (162)
T ss_pred CEEEEec------------CCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCC
Confidence 9999984 44444556789999999999988999999999999987666666777665
No 32
>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.82 E-value=2.3e-19 Score=132.63 Aligned_cols=112 Identities=29% Similarity=0.380 Sum_probs=94.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEE----CCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLL----PDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA 116 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~----~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~ 116 (207)
+|+|+|++|++|+..+ .|.+||||++.+. +...++++|+++.++.+|.|||+|.|.+ .....+
T Consensus 1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v------------~~~~~~ 67 (120)
T cd08395 1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFIL------------GNEDDP 67 (120)
T ss_pred CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEe------------eCcCCC
Confidence 4899999999999877 5899999999984 2334567999999999999999999995 222244
Q ss_pred CCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 117 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 117 ~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
....|.|.|||++..+++++||++.++|.++..++....|++|.+...+
T Consensus 68 ~~~~L~~~V~D~d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~~~~~ 116 (120)
T cd08395 68 ESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPLGRRIHM 116 (120)
T ss_pred ceeEEEEEEEEecccCCCCEEEEEEEEHHHCcCCCcEEEEEECcCcccc
Confidence 5678999999999888899999999999999988888899999865443
No 33
>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3). RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.82 E-value=2.9e-19 Score=136.74 Aligned_cols=140 Identities=32% Similarity=0.431 Sum_probs=105.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
+|.|+|++|+||.. ..|.+||||++.+.+.. ...++|++++++.+|.|||+|.|.+......+..+..++..++..
T Consensus 1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~ 78 (148)
T cd04010 1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK 78 (148)
T ss_pred CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence 48999999999998 47899999999997532 257899999999999999999999632222221111234445455
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEeceeeccc-cccceEEEccccCCCC---ceEEeecCCCCceeee
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWRELQSVEGEG---GQVYYLDGPKGNLATG 182 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~-~~~~~w~~L~~~~~~~---~~~~~l~~~~g~i~~~ 182 (207)
..|.|.||+++.+++++|||++.++|..+..+ .....||+|.+..... +....-.+.-|++++.
T Consensus 79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (148)
T cd04010 79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQPREEKSTPPGTRSSKDNSLGSLRLK 146 (148)
T ss_pred EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCCcccccCCCCCcccccCCcccEEEe
Confidence 78999999999888899999999999999876 5678999998765443 3334445566777764
No 34
>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip). Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian
Probab=99.82 E-value=7.7e-19 Score=130.02 Aligned_cols=115 Identities=23% Similarity=0.396 Sum_probs=95.6
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecC-CCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
+.|+|+|++|++++..+ .|.+||||++.+ +.++++|+++.+ +.+|.|||+|.|.+ +. ..
T Consensus 2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~l---g~~~~kT~v~~~~~~nP~WNe~F~f~v-------------~~---~~ 61 (121)
T cd04016 2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRV---GHAVYETPTAYNGAKNPRWNKTIQCTL-------------PE---GV 61 (121)
T ss_pred cEEEEEEEEccCCCcCC-CCCCCceEEEEE---CCEEEEeEEccCCCCCCccCeEEEEEe-------------cC---CC
Confidence 68999999999988776 689999999999 457789999875 89999999999995 21 23
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEece-eeccccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALC-QIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG 182 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~-~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~ 182 (207)
..|.|+|||++.+++|++||.+.+++. .+..++..+.|++|.+..+. ...|+|.+.
T Consensus 62 ~~l~~~V~d~d~~~~dd~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~--------~~~g~i~l~ 118 (121)
T cd04016 62 DSIYIEIFDERAFTMDERIAWTHITIPESVFNGETLDDWYSLSGKQGE--------DKEGMINLV 118 (121)
T ss_pred cEEEEEEEeCCCCcCCceEEEEEEECchhccCCCCccccEeCcCccCC--------CCceEEEEE
Confidence 579999999999999999999999996 57777888999999864432 244788773
No 35
>KOG1028|consensus
Probab=99.81 E-value=5.1e-19 Score=156.01 Aligned_cols=149 Identities=54% Similarity=0.884 Sum_probs=129.5
Q ss_pred cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645 23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN 102 (207)
Q Consensus 23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~ 102 (207)
....|..++++.|+.+...|.|+|++|++|+..+..|.+||||++++.|+...+.+|++++++++|.|+|+|.|.
T Consensus 150 ~~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~----- 224 (421)
T KOG1028|consen 150 VKAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFE----- 224 (421)
T ss_pred ceeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEee-----
Confidence 344588999999999999999999999999999977889999999999999899999999999999999999999
Q ss_pred ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG 182 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~ 182 (207)
++..++....|.+.|||++++++++++|++.++|..+........|.+|..........- ||+.+
T Consensus 225 --------v~~~~l~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~------gel~~- 289 (421)
T KOG1028|consen 225 --------VPYEELSNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELA------GELLL- 289 (421)
T ss_pred --------cCHHHhccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCccccc------ceEEE-
Confidence 677778899999999999999999999999999998877777788999997544422222 78888
Q ss_pred ceeeeeccee
Q psy17645 183 KKALYLPNVG 192 (207)
Q Consensus 183 ~~~~~~~~~~ 192 (207)
.+.|+|..+
T Consensus 290 -sL~Y~p~~g 298 (421)
T KOG1028|consen 290 -SLCYLPTAG 298 (421)
T ss_pred -EEEeecCCC
Confidence 555888743
No 36
>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.80 E-value=1.1e-18 Score=129.98 Aligned_cols=120 Identities=25% Similarity=0.334 Sum_probs=97.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
+|+|+|++|++|...+..+.+||||++.+. .+.++|+++.++.+|.|||.|.|.+ ..........
T Consensus 1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~---~~~~rT~v~~~t~nP~Wne~f~f~~------------~~~~~~~~~~ 65 (127)
T cd04022 1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFD---GQKKRTRTKPKDLNPVWNEKLVFNV------------SDPSRLSNLV 65 (127)
T ss_pred CeEEEEEEeeCCCCCCCCCCcCcEEEEEEC---CEEecceeEcCCCCCccceEEEEEc------------cCHHHccCCe
Confidence 489999999999998888999999999983 4678999999999999999999984 2222333568
Q ss_pred EEEEEEecCCCC-CCceeEEEEEeceeec-cccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645 121 LVFAIFDFDRFS-KHDQIGEVKVALCQID-LAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG 182 (207)
Q Consensus 121 l~i~v~d~~~~~-~~~~lG~~~v~L~~l~-~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~ 182 (207)
|.|.|||.+.+. .+++||++.+++.++. .+....+||+|.+.... +...|+|.+.
T Consensus 66 l~~~V~d~~~~~~~d~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~-------~~~~G~l~l~ 122 (127)
T cd04022 66 LEVYVYNDRRSGRRRSFLGRVRISGTSFVPPSEAVVQRYPLEKRGLF-------SRVRGEIGLK 122 (127)
T ss_pred EEEEEeeCCCCcCCCCeeeEEEEcHHHcCCCCCccceEeEeeeCCCC-------CCccEEEEEE
Confidence 999999998876 7899999999999986 45667899999864321 1245888883
No 37
>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.79 E-value=1.8e-18 Score=128.82 Aligned_cols=103 Identities=25% Similarity=0.352 Sum_probs=90.5
Q ss_pred EEEEEEEeeC---CCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 42 LSVTVIQAED---LPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 42 L~V~I~~a~n---L~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
|.|+|++|++ |...+..|.+||||.+.+ +.++.+|++++++.+|.|||+|.|.+ . + ..
T Consensus 2 L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~---g~~~~rTk~~~~~~nP~WnE~f~f~v-------------~--~-~~ 62 (126)
T cd08379 2 LEVGILGAQGLDVLRAKDGRGSTDAYCVAKY---GPKWVRTRTVEDSSNPRWNEQYTWPV-------------Y--D-PC 62 (126)
T ss_pred eEEEEEEeECCccccccccCCCCCeeEEEEE---CCEEeEcCcccCCCCCcceeEEEEEe-------------c--C-CC
Confidence 7899999999 888888899999999998 55788999999999999999999985 1 1 23
Q ss_pred ceEEEEEEecCCCC------CCceeEEEEEeceeeccccccceEEEccccC
Q psy17645 119 KTLVFAIFDFDRFS------KHDQIGEVKVALCQIDLAQTIEEWRELQSVE 163 (207)
Q Consensus 119 ~~l~i~v~d~~~~~------~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~ 163 (207)
..|.|+|||++... .+++||++.++|..+..+....+|++|.+..
T Consensus 63 ~~l~v~V~d~d~~~~~~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~ 113 (126)
T cd08379 63 TVLTVGVFDNSQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLN 113 (126)
T ss_pred CEEEEEEEECCCccccccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCC
Confidence 58999999998863 8899999999999998888889999998654
No 38
>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein
Probab=99.79 E-value=3.6e-18 Score=126.16 Aligned_cols=118 Identities=31% Similarity=0.503 Sum_probs=99.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
+|+|+|.+|++|+..+..+.+|||+++.+ .+...++|+++.++.+|.|+|.|.|.+ . . ....
T Consensus 1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~--~~~~~~kT~~~~~t~nP~Wne~f~f~v-------------~--~-~~~~ 62 (121)
T cd04042 1 QLDIHLKEGRNLAARDRGGTSDPYVKFKY--GGKTVYKSKTIYKNLNPVWDEKFTLPI-------------E--D-VTQP 62 (121)
T ss_pred CeEEEEEEeeCCCCcCCCCCCCCeEEEEE--CCEEEEEeeeccCCCCCccceeEEEEe-------------c--C-CCCe
Confidence 48999999999999988899999999998 344678999999999999999999985 2 2 2468
Q ss_pred EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645 121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKK 184 (207)
Q Consensus 121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~ 184 (207)
+.|+|||++..+++++||++.+++.++..+...+.|++|.+..+. ...|+|.+.++
T Consensus 63 l~~~v~D~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--------~~~G~l~l~~~ 118 (121)
T cd04042 63 LYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSD--------EDLGYISLVVT 118 (121)
T ss_pred EEEEEEeCCCCCCCcceEEEEEEHHHcCCCCCeEEEEECCCCCCc--------cCceEEEEEEE
Confidence 999999999988999999999999999888889999999764431 23478887433
No 39
>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4. RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a
Probab=99.78 E-value=6.2e-18 Score=125.20 Aligned_cols=122 Identities=30% Similarity=0.480 Sum_probs=97.7
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
+|+|+|++|++|...+..+.+|||+++.+ +....+|+++.++.+|.|+|.|.|.+ .. .....
T Consensus 1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~~--~~~~~ 62 (123)
T cd04025 1 RLRCHVLEARDLAPKDRNGTSDPFVRVFY---NGQTLETSVVKKSCYPRWNEVFEFEL-------------ME--GADSP 62 (123)
T ss_pred CEEEEEEEeeCCCCCCCCCCcCceEEEEE---CCEEEeceeecCCCCCccCcEEEEEc-------------CC--CCCCE
Confidence 48999999999999888889999999998 34678999999999999999999984 21 12468
Q ss_pred EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645 121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK 183 (207)
Q Consensus 121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~ 183 (207)
|.|+|||++..+.+++||++.++|.++..+.....|+.|.+...... ......|.|.+.|
T Consensus 63 l~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~~~~~~---~~~~~~G~l~~~~ 122 (123)
T cd04025 63 LSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLLPDPRAEE---ESGGNLGSLRLKV 122 (123)
T ss_pred EEEEEEECCCCCCCcEeEEEEEEHHHcccCCCCCCEEECCCCCCCCc---cccCceEEEEEEe
Confidence 99999999998889999999999999877777789999986433211 1112336776644
No 40
>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2). A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o
Probab=99.78 E-value=6e-18 Score=124.61 Aligned_cols=105 Identities=28% Similarity=0.469 Sum_probs=91.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|.|+|++|++|+..+..+.+||||++.+.+.....++|+++.++.+|.|||+|.|.+ ... ....|
T Consensus 2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i-------------~~~--~~~~l 66 (119)
T cd04036 2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRI-------------QSQ--VKNVL 66 (119)
T ss_pred eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEe-------------Ccc--cCCEE
Confidence 789999999999988788999999999854445678999999999999999999984 222 34579
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 162 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~ 162 (207)
.|+|||++.. .+++||++.+++.++..+.....|++|.+.
T Consensus 67 ~v~v~d~d~~-~~~~iG~~~~~l~~l~~g~~~~~~~~L~~~ 106 (119)
T cd04036 67 ELTVMDEDYV-MDDHLGTVLFDVSKLKLGEKVRVTFSLNPQ 106 (119)
T ss_pred EEEEEECCCC-CCcccEEEEEEHHHCCCCCcEEEEEECCCC
Confidence 9999999988 889999999999999888889999999753
No 41
>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates
Probab=99.78 E-value=1e-17 Score=128.52 Aligned_cols=133 Identities=21% Similarity=0.274 Sum_probs=102.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecC-CCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
|+|+|++|++|+..+..|.+||||++.+. .+..+|++... +.+|.|||.|.|.+ + +.....
T Consensus 2 L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~---~~~~kTk~~~~~t~nP~WNE~F~f~v-------------~--~~~~~~ 63 (150)
T cd04019 2 LRVTVIEAQDLVPSDKNRVPEVFVKAQLG---NQVLRTRPSQTRNGNPSWNEELMFVA-------------A--EPFEDH 63 (150)
T ss_pred EEEEEEEeECCCCCCCCCCCCeEEEEEEC---CEEeeeEeccCCCCCCcccCcEEEEe-------------c--CccCCe
Confidence 78999999999999988999999999993 47889998876 69999999999984 2 223468
Q ss_pred EEEEEEecCCCCCCceeEEEEEeceeeccc----cccceEEEccccCCCCceEEeecCCCCceeeeceeeeecceeeee
Q psy17645 121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLA----QTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKN 195 (207)
Q Consensus 121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~----~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~~~~~~ 195 (207)
+.|.||+++..+++++||++.++|.++..+ ....+||+|.+..+... .-.-....|+|.+ ++.+.+.+.+..
T Consensus 64 l~v~V~d~~~~~~dd~lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~-~~k~~k~~g~l~l--~i~~~~~~~~~~ 139 (150)
T cd04019 64 LILSVEDRVGPNKDEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAME-QKKKRKFASRIHL--RLCLDGGYHVLD 139 (150)
T ss_pred EEEEEEEecCCCCCCeEEEEEEEHHHCcccCCCCccCCceEECcCCCCccc-ccccCcccccEEE--EEEecCcceEee
Confidence 999999999888899999999999998643 44689999987643100 0011134688888 555666666543
No 42
>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain. Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain
Probab=99.77 E-value=1.1e-17 Score=123.80 Aligned_cols=119 Identities=39% Similarity=0.508 Sum_probs=100.3
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|+.++++.|++..+.|+|+|++|++|+..+..+.+|||+++.+.+.. ....+|++++++.+|.|+|.|.|..
T Consensus 2 G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~------ 75 (123)
T cd04035 2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYG------ 75 (123)
T ss_pred cEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcC------
Confidence 67899999999999999999999999988878899999999986543 3478999999999999999999963
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEE
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 158 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~ 158 (207)
++..++....+.|++||++.. .+++||++.++|+++..+.....|+.
T Consensus 76 ------~~~~~~~~~~l~~~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~~~~ 122 (123)
T cd04035 76 ------ITEEDIQRKTLRLLVLDEDRF-GNDFLGETRIPLKKLKPNQTKQFNIC 122 (123)
T ss_pred ------CCHHHhCCCEEEEEEEEcCCc-CCeeEEEEEEEcccCCCCcceEeecc
Confidence 333344457899999999987 78999999999999876655555544
No 43
>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei
Probab=99.77 E-value=1.4e-17 Score=122.02 Aligned_cols=104 Identities=32% Similarity=0.493 Sum_probs=91.6
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
.++|+|++|++|+..+..+.+|||+++.+ +....+|+++.++.+|.|+|.|.|.+ . +.....
T Consensus 1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~--~~~~~~ 62 (116)
T cd08376 1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRL---GNEKYKSKVCSKTLNPQWLEQFDLHL-------------F--DDQSQI 62 (116)
T ss_pred CEEEEEEEEECCCCCCCCCCCCcEEEEEE---CCEeEecccccCCCCCceeEEEEEEe-------------c--CCCCCE
Confidence 37899999999999988899999999998 45678999999999999999999985 2 113578
Q ss_pred EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645 121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 162 (207)
Q Consensus 121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~ 162 (207)
+.++|||++..+++++||++.++|.++..+.....|++|.+.
T Consensus 63 l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~w~~L~~~ 104 (116)
T cd08376 63 LEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELELEDG 104 (116)
T ss_pred EEEEEEECCCCCCCCeEEEEEEeHHHCCCCCceEEEEEccCC
Confidence 999999999988999999999999999888888999999854
No 44
>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins. Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr
Probab=99.76 E-value=9.8e-18 Score=123.13 Aligned_cols=115 Identities=24% Similarity=0.330 Sum_probs=93.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
+.|+|+|++|++|+..+..+.+|||+++.+. ....+|+++. .+.+|.|+|.|.|.+ +.. ..
T Consensus 1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~---~~~~kT~~~~~~~~nP~Wne~f~f~v-------------~~~--~~ 62 (118)
T cd08681 1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIG---GVTKKTKTDFRGGQHPEWDEELRFEI-------------TED--KK 62 (118)
T ss_pred CEEEEEEEEccCCCCCCcCCCCCceEEEEEC---CCccccccccCCCCCCccCceEEEEe-------------cCC--CC
Confidence 5799999999999999888999999999983 3677888865 578999999999984 321 34
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK 183 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~ 183 (207)
..|.|+|||++..+ +++||++.+++.++..+....+|++|..... ..|+|.+.+
T Consensus 63 ~~l~i~v~d~~~~~-~~~iG~~~~~l~~~~~~~~~~~w~~L~~~~~----------~~G~i~l~l 116 (118)
T cd08681 63 PILKVAVFDDDKRK-PDLIGDTEVDLSPALKEGEFDDWYELTLKGR----------YAGEVYLEL 116 (118)
T ss_pred CEEEEEEEeCCCCC-CcceEEEEEecHHHhhcCCCCCcEEeccCCc----------EeeEEEEEE
Confidence 68999999998866 8999999999999877777889999985331 247777743
No 45
>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1). RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki
Probab=99.76 E-value=3.3e-17 Score=122.08 Aligned_cols=122 Identities=31% Similarity=0.482 Sum_probs=96.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
..|+|+|++|++|+.. +.+||||++.+ .+.+..+|++. .+.+|.|||.|.|.. .+ . ...
T Consensus 4 ~~L~V~Vi~A~~L~~~---~~~DPYv~v~l--~~~~~~kT~v~-~~~nP~WnE~f~f~~------------~~-~--~~~ 62 (126)
T cd08400 4 RSLQLNVLEAHKLPVK---HVPHPYCVISL--NEVKVARTKVR-EGPNPVWSEEFVFDD------------LP-P--DVN 62 (126)
T ss_pred eEEEEEEEEeeCCCCC---CCCCeeEEEEE--CCEeEEEeecC-CCCCCccCCEEEEec------------CC-C--CcC
Confidence 4699999999999874 47899999999 34455788875 579999999999984 22 1 224
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPN 190 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~ 190 (207)
.+.|.+||.+..+++++||++.++|.++..+...+.|++|.+..... ....|+|++ ++.|.++
T Consensus 63 ~l~v~v~d~~~~~~d~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~------~~~~G~i~l--~l~~~~~ 125 (126)
T cd08400 63 SFTISLSNKAKRSKDSEIAEVTVQLSKLQNGQETDEWYPLSSASPLK------GGEWGSLRI--RARYSHE 125 (126)
T ss_pred EEEEEEEECCCCCCCCeEEEEEEEHhHccCCCcccEeEEcccCCCCC------CCcCcEEEE--EEEEEcc
Confidence 78899999999999999999999999998888889999998754311 134589999 4546553
No 46
>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3. RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p
Probab=99.75 E-value=3.9e-17 Score=120.91 Aligned_cols=116 Identities=28% Similarity=0.484 Sum_probs=94.9
Q ss_pred EEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 42 LSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 42 L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
|.|+|++|+||+..+ ..|.+||||.+.+ .+....+|++++++.+|.|+|.|.|.+ +. ....
T Consensus 2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l--~~~~~~kT~v~~kt~~P~WnE~F~f~v-------------~~---~~~~ 63 (121)
T cd08401 2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNL--DQEEVFRTKTVEKSLCPFFGEDFYFEI-------------PR---TFRH 63 (121)
T ss_pred eEEEEEEccCCCCCCCCCCCcCcEEEEEE--CCccEEEeeEEECCCCCccCCeEEEEc-------------CC---CCCE
Confidence 679999999999864 4578999999998 344568999999999999999999994 32 2368
Q ss_pred EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645 121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG 182 (207)
Q Consensus 121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~ 182 (207)
+.|.|||++.+++++++|.+.++++++..+...+.|++|.+...... ..|+|.+.
T Consensus 64 l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~-------~~G~i~l~ 118 (121)
T cd08401 64 LSFYIYDRDVLRRDSVIGKVAIKKEDLHKYYGKDTWFPLQPVDADSE-------VQGKVHLE 118 (121)
T ss_pred EEEEEEECCCCCCCceEEEEEEEHHHccCCCCcEeeEEEEccCCCCc-------ccEEEEEE
Confidence 99999999999999999999999999987788889999987533211 24777663
No 47
>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu
Probab=99.75 E-value=4.2e-17 Score=121.16 Aligned_cols=120 Identities=31% Similarity=0.462 Sum_probs=97.1
Q ss_pred CEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645 40 NSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM 117 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~ 117 (207)
+.|+|+|++|++|+..+. .+.+|||+.+.+ +.+.++|++++++.+|.|+|.|.|.+ . ...
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~---~~~~~kT~~~~~t~~P~Wne~f~~~~-------------~--~~~ 62 (128)
T cd04024 1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSV---GAQRFKTQTIPNTLNPKWNYWCEFPI-------------F--SAQ 62 (128)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEE---CCEEEecceecCCcCCccCCcEEEEe-------------c--CCC
Confidence 578999999999999887 789999999987 45678999999999999999999985 2 224
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeecc---ccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL---AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG 182 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~---~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~ 182 (207)
...|.|+|||++..+.+++||++.+++.++.. .....+|+.|.+.... .-....|+|.+.
T Consensus 63 ~~~l~i~v~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~-----~~~~~~G~i~l~ 125 (128)
T cd04024 63 NQLLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPG-----KTSVVSGEIHLQ 125 (128)
T ss_pred CCEEEEEEEECCCCCCCCcceEEEEEHHHhhcccccCccceeEEccCcccC-----ccccccceEEEE
Confidence 57999999999988889999999999999863 2345799999875332 112345788773
No 48
>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s
Probab=99.75 E-value=3.2e-17 Score=123.19 Aligned_cols=113 Identities=35% Similarity=0.513 Sum_probs=96.7
Q ss_pred CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC----CceEEeeeecCCCCCeEecEEEEeeec
Q psy17645 25 PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKVSF 100 (207)
Q Consensus 25 ~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~ 100 (207)
+.|...+++.|+...+.|+|+|++|++|+..+..+.+||||++.+.+.. ...++|++++++.+|.|+|+|.|.+
T Consensus 1 ~~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i-- 78 (133)
T cd04009 1 PYGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNV-- 78 (133)
T ss_pred CceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEe--
Confidence 3578899999999999999999999999998888899999999987543 3578999999999999999999995
Q ss_pred ccccceeccCccc-CcCCCceEEEEEEecCCCCCCceeEEEEEeceeecc
Q psy17645 101 LNRSEVFEQGVPY-ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149 (207)
Q Consensus 101 ~~~~~~~~~~~~~-~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~ 149 (207)
... .......|.|+|||++.++++++||++.++|.++..
T Consensus 79 ----------~~~~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~ 118 (133)
T cd04009 79 ----------PPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG 118 (133)
T ss_pred ----------chhhcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence 111 112456899999999999889999999999998853
No 49
>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein. The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a
Probab=99.75 E-value=5.1e-17 Score=120.93 Aligned_cols=122 Identities=25% Similarity=0.432 Sum_probs=98.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|.|+|++|+||+. ..+.+|||+.+.+. ...+.++|+++.++.+|.|+|.|.|.+ .. ....+
T Consensus 1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~-~~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~~---~~~~l 61 (126)
T cd08678 1 LLVKNIKANGLSE--AAGSSNPYCVLEMD-EPPQKYQSSTQKNTSNPFWDEHFLFEL-------------SP---NSKEL 61 (126)
T ss_pred CEEEEEEecCCCC--CCCCcCCEEEEEEC-CCCcEEEeEEEecCCCCccCceEEEEe-------------CC---CCCEE
Confidence 5789999999987 57899999999983 224578999999999999999999984 21 34689
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPN 190 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~ 190 (207)
.|+|||++..+++++||++.+++.++..+....+|++|.+..... ....|+|.+ .+.|.+.
T Consensus 62 ~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~------~~~~G~l~l--~~~~~~~ 122 (126)
T cd08678 62 LFEVYDNGKKSDSKFLGLAIVPFDELRKNPSGRQIFPLQGRPYEG------DSVSGSITV--EFLFMEP 122 (126)
T ss_pred EEEEEECCCCCCCceEEEEEEeHHHhccCCceeEEEEecCCCCCC------CCcceEEEE--EEEEecc
Confidence 999999999888999999999999998877788999998654321 234688888 4445443
No 50
>cd08375 C2_Intersectin C2 domain present in Intersectin. A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro
Probab=99.74 E-value=4.8e-17 Score=122.85 Aligned_cols=118 Identities=29% Similarity=0.457 Sum_probs=95.3
Q ss_pred cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645 38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM 117 (207)
Q Consensus 38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~ 117 (207)
..+.|+|+|++|++|+..+..+.+||||++.+ +.+.++|+++.++.+|.|||.|.|.+ . +..
T Consensus 13 ~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~---~~~~~kT~vi~~t~nP~Wne~f~f~v-------------~--~~~ 74 (136)
T cd08375 13 GIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSM---GSQEHKTKVVSDTLNPKWNSSMQFFV-------------K--DLE 74 (136)
T ss_pred CcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEE---CCEeeeccccCCCCCCccCceEEEEe-------------c--Ccc
Confidence 46789999999999999988899999999998 45689999999999999999999985 2 334
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeecc-----ccccceEEEccccCCCCceEEeecCCCCceeeecee
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-----AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKA 185 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~-----~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~ 185 (207)
...+.|+|||.+.++.+++||++.+++.++.. ......|..|. ....|+|.+.+.+
T Consensus 75 ~~~l~i~V~D~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~------------~~~~g~i~l~~~~ 135 (136)
T cd08375 75 QDVLCITVFDRDFFSPDDFLGRTEIRVADILKETKESKGPITKRLLLH------------EVPTGEVVVKLDL 135 (136)
T ss_pred CCEEEEEEEECCCCCCCCeeEEEEEEHHHhccccccCCCcEEEEeccc------------cccceeEEEEEEe
Confidence 56899999999998889999999999998865 22333555552 1234888886553
No 51
>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma. A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd
Probab=99.74 E-value=6e-17 Score=121.18 Aligned_cols=120 Identities=35% Similarity=0.581 Sum_probs=100.4
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC--CceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~--~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
|.+.+++.|+. +.|+|+|++|+||+..+..+.+|||+++.+.+.. ...++|++++++.+|.|+|+|.|.+
T Consensus 2 g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~------ 73 (131)
T cd04026 2 GRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDL------ 73 (131)
T ss_pred cEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeC------
Confidence 66777887765 9999999999999998878899999999986432 3578999999999999999999984
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccC
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 163 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~ 163 (207)
...+ ....|.|.|||++....+++||++.++|.++... ....||+|.+..
T Consensus 74 -------~~~~-~~~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~ 123 (131)
T cd04026 74 -------KPAD-KDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQE 123 (131)
T ss_pred -------Cchh-cCCEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcc
Confidence 3222 3468999999999888899999999999998644 778999997643
No 52
>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone. The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a
Probab=99.74 E-value=2.4e-17 Score=119.95 Aligned_cols=104 Identities=33% Similarity=0.570 Sum_probs=88.9
Q ss_pred EEEEEEEeeCCCCCCC-CCCCCcEEEEEEECCCCceEEeeeecCCCCCeE-ecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 42 LSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF-NETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~-~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w-~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
|.|+|++|++|+..+. .+.+|||+++.+. ...++|++++++.+|.| +|.|.|. ++...+...
T Consensus 1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~---~~~~kT~v~~~~~nP~W~ne~f~f~-------------i~~~~l~~~ 64 (110)
T cd08688 1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFG---STTYKTDVVKKSLNPVWNSEWFRFE-------------VDDEELQDE 64 (110)
T ss_pred CEEEEEEEECCCccccCCCCCCceEEEEEC---CeeEecceecCCCCCcccCcEEEEE-------------cChHHcCCC
Confidence 5799999999998774 6889999999983 37889999999999999 9999998 443334457
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeecc---ccccceEEEccc
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDL---AQTIEEWRELQS 161 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~---~~~~~~w~~L~~ 161 (207)
.|.|+|||++.++++++||++.+++.++.. +...+.||+|.+
T Consensus 65 ~l~i~V~d~d~~~~~~~iG~~~~~l~~l~~~~~~~~~~~w~~l~~ 109 (110)
T cd08688 65 PLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPIYD 109 (110)
T ss_pred eEEEEEEeCCCCCCCCceEEEEEeHHHhcccCCccccCCeEEccc
Confidence 899999999999999999999999999866 345789999974
No 53
>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42). Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.74 E-value=9.6e-17 Score=120.22 Aligned_cols=120 Identities=33% Similarity=0.481 Sum_probs=96.5
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC----CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM 117 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~ 117 (207)
|+|+|++|++|...+..+.+|||+++.+.... ....+|++++++.+|.|+|+|.|.+ +. .
T Consensus 2 L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~~---~ 65 (133)
T cd04033 2 LRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRV-------------NP---R 65 (133)
T ss_pred EEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEE-------------cC---C
Confidence 78999999999999888899999999986431 1257899999999999999999984 22 2
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeeccccc------cceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT------IEEWRELQSVEGEGGQVYYLDGPKGNLATGKK 184 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~------~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~ 184 (207)
...+.|+|||++..+++++||++.+++.++..+.+ ..+||.|.+.... ....|+|.+.+.
T Consensus 66 ~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~G~l~~~~~ 131 (133)
T cd04033 66 EHRLLFEVFDENRLTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSK-------SRVKGHLRLYMA 131 (133)
T ss_pred CCEEEEEEEECCCCCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCC-------CcceeEEEEEEe
Confidence 35789999999999899999999999999876543 3589999864332 134689998544
No 54
>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset. MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate
Probab=99.73 E-value=5.6e-17 Score=120.07 Aligned_cols=112 Identities=31% Similarity=0.423 Sum_probs=91.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|.|+|++|++|+.. .+|||+++.+. ....+|++++++.+|.|||+|.|.+ .......|
T Consensus 2 L~V~Vi~a~~L~~~----~~Dpyv~v~l~---~~~~kT~v~~~t~nP~Wne~F~f~~---------------~~~~~~~L 59 (121)
T cd08378 2 LYVRVVKARGLPAN----SNDPVVEVKLG---NYKGSTKAIERTSNPEWNQVFAFSK---------------DRLQGSTL 59 (121)
T ss_pred EEEEEEEecCCCcc----cCCCEEEEEEC---CccccccccCCCCCCccceEEEEEc---------------CCCcCCEE
Confidence 78999999999877 68999999983 4678999999999999999999984 22245789
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeecccc-----ccceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQ-----TIEEWRELQSVEGEGGQVYYLDGPKGNLATGKK 184 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~-----~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~ 184 (207)
.++|||++.. ++++||++.++|.++.... ...+||.|.+..+. ...|+|.+.+.
T Consensus 60 ~~~v~d~d~~-~~~~lG~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~--------~~~G~i~l~~~ 118 (121)
T cd08378 60 EVSVWDKDKA-KDDFLGGVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGG--------RVGGELMLAVW 118 (121)
T ss_pred EEEEEeCCCC-cCceeeeEEEEhHhCcCCCCCCCCCCcceEEccCCCCC--------ccceEEEEEEE
Confidence 9999999876 7899999999999986532 34689999875541 35689988554
No 55
>cd04041 C2A_fungal C2 domain first repeat; fungal group. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan
Probab=99.73 E-value=3.2e-17 Score=119.44 Aligned_cols=106 Identities=35% Similarity=0.583 Sum_probs=88.4
Q ss_pred CEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 40 NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
|.|+|+|++|++|+..+.. +.+|||+++.+.+.+....+|++++++.+|.|+|.|.|.+ .+.+....
T Consensus 1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~------------~~~~~~~~ 68 (111)
T cd04041 1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLV------------TPDEVKAG 68 (111)
T ss_pred CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEe------------CchhccCC
Confidence 5799999999999998877 8999999999865555678999999999999999999984 22111234
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
..|.|+|||++.++.+++||++.+++.++. ....|+++.
T Consensus 69 ~~l~~~V~d~d~~~~dd~lG~~~i~l~~l~---~~~~~~~~~ 107 (111)
T cd04041 69 ERLSCRLWDSDRFTADDRLGRVEIDLKELI---EDRNWMGRR 107 (111)
T ss_pred CEEEEEEEeCCCCCCCCcceEEEEEHHHHh---cCCCCCccc
Confidence 689999999999999999999999999985 345687764
No 56
>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4. Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.
Probab=99.72 E-value=1.9e-16 Score=117.16 Aligned_cols=103 Identities=33% Similarity=0.562 Sum_probs=87.9
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|.|+|++|++|...+..|.+|||+.+.+ .+....+|++++++.+|.|+|.|.|.+ +. ....+
T Consensus 2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~--~~~~~~kT~v~~~t~nP~Wne~f~~~~-------------~~---~~~~l 63 (121)
T cd04054 2 LYIRIVEGKNLPAKDITGSSDPYCIVKV--DNEVIIRTATVWKTLNPFWGEEYTVHL-------------PP---GFHTV 63 (121)
T ss_pred EEEEEEEeeCCcCCCCCCCCCceEEEEE--CCEeeeeeeeEcCCCCCcccceEEEee-------------CC---CCCEE
Confidence 7899999999999998899999999998 333457999999999999999999984 21 23689
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeeccc-cccceEEEcccc
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQIDLA-QTIEEWRELQSV 162 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~-~~~~~w~~L~~~ 162 (207)
.|.+||++.+++++++|++.+++..+..+ ...++|++|.+.
T Consensus 64 ~v~v~d~~~~~~d~~iG~~~~~~~~~~~~~~~~~~W~~L~~~ 105 (121)
T cd04054 64 SFYVLDEDTLSRDDVIGKVSLTREVISAHPRGIDGWMNLTEV 105 (121)
T ss_pred EEEEEECCCCCCCCEEEEEEEcHHHhccCCCCCCcEEECeee
Confidence 99999999999999999999999887643 346799999764
No 57
>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1). Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha
Probab=99.72 E-value=1.9e-16 Score=121.78 Aligned_cols=122 Identities=21% Similarity=0.283 Sum_probs=94.0
Q ss_pred EEEEEEEeeC--CCCCCCCCCCCcEEEEEEE-C-CCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645 42 LSVTVIQAED--LPALDMGGTSDPYVKVYLL-P-DKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM 117 (207)
Q Consensus 42 L~V~I~~a~n--L~~~~~~g~~dpyv~v~l~-~-~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~ 117 (207)
..++|..|++ |+.....+.+||||++.+. | ...++.+|++++.|.+|.|||+|.|.++...+.. ...+.
T Consensus 4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~-------~R~l~ 76 (155)
T cd08690 4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSF-------QRVFK 76 (155)
T ss_pred eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchh-------hhhcc
Confidence 4556666666 6676667889999999973 4 3446899999999999999999999952111111 00245
Q ss_pred CceEEEEEEecCCC-CCCceeEEEEEeceeeccccccceEEEccccCCCCceEE
Q psy17645 118 NKTLVFAIFDFDRF-SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVY 170 (207)
Q Consensus 118 ~~~l~i~v~d~~~~-~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~ 170 (207)
...|.++|||.+.+ .+|++||++.++|+.+..+...+.|++|....+..++++
T Consensus 77 ~~~L~~~V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l 130 (155)
T cd08690 77 RHGLKFEVYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKL 130 (155)
T ss_pred CCcEEEEEEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEE
Confidence 67899999999876 579999999999999987777888999997777666666
No 58
>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.72 E-value=2.5e-16 Score=118.61 Aligned_cols=122 Identities=27% Similarity=0.425 Sum_probs=95.1
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC----c
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA----D 115 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~----~ 115 (207)
++|+|+|++|++|+..+..|.+|||+++.+ ..+.++|++++++.+|.|+|.|.|.. .... +
T Consensus 1 ~~l~v~V~~a~~L~~~d~~g~~dpyv~v~~---~~~~~kT~v~~~t~nP~Wne~~~f~~------------~~~~~~~~~ 65 (135)
T cd04017 1 FQLRAYIYQARDLLAADKSGLSDPFARVSF---LNQSQETEVIKETLSPTWDQTLIFDE------------VELYGSPEE 65 (135)
T ss_pred CEEEEEEEEeecCcCCCCCCCCCCEEEEEE---CCeeeEeeeEcCCCCCccCcEEEEee------------eeccCChHH
Confidence 479999999999999998899999999998 35688999999999999999999974 2110 1
Q ss_pred C--CCceEEEEEEecCCCCCCceeEEEEE-eceeecc---ccccceEEEccccCCCCceEEeecCCCCceeeeceee
Q psy17645 116 A--MNKTLVFAIFDFDRFSKHDQIGEVKV-ALCQIDL---AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKAL 186 (207)
Q Consensus 116 ~--~~~~l~i~v~d~~~~~~~~~lG~~~v-~L~~l~~---~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~ 186 (207)
+ ....+.++|||++..+++++||++.+ ++..+.. .....+|++|..... ..|+|.+.+.+.
T Consensus 66 ~~~~~~~l~v~V~d~d~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~----------~~Geil~~~~~~ 132 (135)
T cd04017 66 IAQNPPLVVVELFDQDSVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQ----------SAGELLAAFELI 132 (135)
T ss_pred hhcCCCEEEEEEEeCcCCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCC----------chhheeEEeEEE
Confidence 1 22578999999999889999999986 4444432 356679999974332 568888865543
No 59
>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD). PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic
Probab=99.72 E-value=2.9e-16 Score=121.49 Aligned_cols=108 Identities=28% Similarity=0.450 Sum_probs=90.0
Q ss_pred CCEEEEEEEEeeCCCCCC------------------------------CCCCCCcEEEEEEECCCCceEEeeeecCCCCC
Q psy17645 39 ANSLSVTVIQAEDLPALD------------------------------MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP 88 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~------------------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P 88 (207)
.+.|.|+|++|++|+.++ ..|.+||||.+.+ .+.+..+|++++++.+|
T Consensus 6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l--~~~~~~rT~v~~~~~nP 83 (158)
T cd04015 6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDL--AGARVARTRVIENSENP 83 (158)
T ss_pred eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEE--CCeEeeEEEEeCCCCCC
Confidence 578999999999999876 2466899999998 33456799999999999
Q ss_pred eEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 89 VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 89 ~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
.|||.|.|.+ . . ....|.|.|||++.++ +++||++.++++++..+...++|++|.+..+.
T Consensus 84 ~WnE~F~~~~-------------~--~-~~~~l~~~V~d~d~~~-~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~ 143 (158)
T cd04015 84 VWNESFHIYC-------------A--H-YASHVEFTVKDNDVVG-AQLIGRAYIPVEDLLSGEPVEGWLPILDSNGK 143 (158)
T ss_pred ccceEEEEEc-------------c--C-CCCEEEEEEEeCCCcC-CcEEEEEEEEhHHccCCCCcceEEECcCCCCC
Confidence 9999999984 2 1 2357999999998875 58999999999999888888999999875433
No 60
>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin
Probab=99.72 E-value=1.5e-16 Score=120.34 Aligned_cols=123 Identities=32% Similarity=0.411 Sum_probs=96.4
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEEC-CCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLP-DKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~-~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
|+|.|++|++|+.. ..+.+|||+++.+.. .....++|+++.++.+|.|+|.|.|.+...++...+...++..++....
T Consensus 1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~ 79 (137)
T cd08675 1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE 79 (137)
T ss_pred CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence 57899999999988 788999999999863 2256889999999999999999999963222211111112223446679
Q ss_pred EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
|.|+|||.+..+++++||++.++|.++........|+.|.+....
T Consensus 80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~~~~ 124 (137)
T cd08675 80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPREAP 124 (137)
T ss_pred EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCcCCC
Confidence 999999999888899999999999998777778899999986543
No 61
>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=99.72 E-value=1.2e-16 Score=115.24 Aligned_cols=100 Identities=26% Similarity=0.381 Sum_probs=85.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|.|+|.+|++|+..+..+.+||||++.+ +.+.++|+++..+.+|.|||.|.|.+ . ......|
T Consensus 2 L~V~v~~A~~L~~~~~~~~~dpyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~v-------------~--~~~~~~l 63 (105)
T cd04050 2 LFVYLDSAKNLPLAKSTKEPSPYVELTV---GKTTQKSKVKERTNNPVWEEGFTFLV-------------R--NPENQEL 63 (105)
T ss_pred EEEEEeeecCCCCcccCCCCCcEEEEEE---CCEEEeCccccCCCCCcccceEEEEe-------------C--CCCCCEE
Confidence 7899999999999888899999999999 34788999999999999999999995 2 1234689
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeecccc--ccceEEEcccc
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQ--TIEEWRELQSV 162 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~--~~~~w~~L~~~ 162 (207)
.|+|||.+. +++||++.++|.++.... ..++||+|.+.
T Consensus 64 ~v~v~d~~~---~~~iG~~~i~l~~l~~~~~~~~~~w~~L~~~ 103 (105)
T cd04050 64 EIEVKDDKT---GKSLGSLTLPLSELLKEPDLTLDQPFPLDNS 103 (105)
T ss_pred EEEEEECCC---CCccEEEEEEHHHhhccccceeeeeEecCCC
Confidence 999999886 789999999999986553 56799999754
No 62
>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP). MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran
Probab=99.72 E-value=3.3e-16 Score=114.95 Aligned_cols=118 Identities=31% Similarity=0.507 Sum_probs=95.4
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
+.|.|+|++|++|+..+..+.+|||+++.+ .....+|+++.++.+|.|+|+|.|.+ . + ...
T Consensus 1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~---~~~~~~T~~~~~t~nP~W~e~f~~~~-------------~--~-~~~ 61 (119)
T cd08377 1 GFLQVKVIRASGLAAADIGGKSDPFCVLEL---VNARLQTHTIYKTLNPEWNKIFTFPI-------------K--D-IHD 61 (119)
T ss_pred CEEEEEEEeeeCCCCCCCCCCCCcEEEEEE---CCEeeecceecCCcCCccCcEEEEEe-------------c--C-cCC
Confidence 578999999999999888889999999998 34567999999999999999999984 2 2 246
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeecee
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKA 185 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~ 185 (207)
.+.|+|||++....+++||++.+++.++..+ ..+|+.|.+..... ...|+|.+.+.+
T Consensus 62 ~l~~~v~d~~~~~~~~~iG~~~~~l~~~~~~--~~~~~~l~~~~~~~-------~~~G~i~l~~~~ 118 (119)
T cd08377 62 VLEVTVYDEDKDKKPEFLGKVAIPLLSIKNG--ERKWYALKDKKLRT-------RAKGSILLEMDV 118 (119)
T ss_pred EEEEEEEECCCCCCCceeeEEEEEHHHCCCC--CceEEECcccCCCC-------ceeeEEEEEEEe
Confidence 8999999999888899999999999988644 46899998654321 135777775543
No 63
>KOG1028|consensus
Probab=99.72 E-value=5e-17 Score=143.43 Aligned_cols=147 Identities=33% Similarity=0.461 Sum_probs=127.5
Q ss_pred cceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCC
Q psy17645 10 KSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLN 87 (207)
Q Consensus 10 ~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~ 87 (207)
-.|+.|++.......-.|+..++++|.+..++|+|.|++|+||...+..+..||||++.+.++.. .+++|.+.+++.+
T Consensus 268 ~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~n 347 (421)
T KOG1028|consen 268 LFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLN 347 (421)
T ss_pred eeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCC
Confidence 45999999877776555999999999999999999999999999999999999999999986653 3789999999999
Q ss_pred CeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCc
Q psy17645 88 PVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGG 167 (207)
Q Consensus 88 P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~ 167 (207)
|.|||+|.|. ++.+.+....+.++||+++.++.+++||++.+.... .+....+|.++...+....
T Consensus 348 pv~nesf~F~-------------vp~~~l~~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m~~~p~~pv 412 (421)
T KOG1028|consen 348 PVFNETFVFD-------------VPPEQLAEVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEMLNSPRKPV 412 (421)
T ss_pred CcccccEEEe-------------CCHHHhheeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHHHhCccCce
Confidence 9999999998 777788888999999999999999999999988765 4455778888877777666
Q ss_pred eEEe
Q psy17645 168 QVYY 171 (207)
Q Consensus 168 ~~~~ 171 (207)
..|+
T Consensus 413 ~~wh 416 (421)
T KOG1028|consen 413 AQWH 416 (421)
T ss_pred eeeE
Confidence 6664
No 64
>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins. Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular
Probab=99.71 E-value=2.8e-16 Score=115.55 Aligned_cols=104 Identities=36% Similarity=0.556 Sum_probs=88.8
Q ss_pred CEEEEEEEEeeCCCCCCC------CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc
Q psy17645 40 NSLSVTVIQAEDLPALDM------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY 113 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~ 113 (207)
+.|+|+|++|+||+..+. .+.+|||+.+.+. .+.++|++++++.+|.|+|.|.|.+ .
T Consensus 1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~---~~~~kT~~~~~t~~P~W~e~f~~~v-------------~- 63 (121)
T cd08391 1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVG---AQTFKSKVIKENLNPKWNEVYEAVV-------------D- 63 (121)
T ss_pred CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEEC---CEeEEccccCCCCCCcccceEEEEe-------------C-
Confidence 468999999999998764 3689999999983 4789999999999999999999984 2
Q ss_pred CcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc
Q psy17645 114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV 162 (207)
Q Consensus 114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~ 162 (207)
+.....|.|+|||++.. ++++||++.+++.++..+....+|++|.+.
T Consensus 64 -~~~~~~l~i~v~d~~~~-~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~ 110 (121)
T cd08391 64 -EVPGQELEIELFDEDPD-KDDFLGRLSIDLGSVEKKGFIDEWLPLEDV 110 (121)
T ss_pred -CCCCCEEEEEEEecCCC-CCCcEEEEEEEHHHhcccCccceEEECcCC
Confidence 22457999999999987 889999999999998877777899999854
No 65
>KOG0696|consensus
Probab=99.71 E-value=1e-17 Score=144.22 Aligned_cols=118 Identities=38% Similarity=0.671 Sum_probs=105.0
Q ss_pred ceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccce
Q psy17645 29 PEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSEV 106 (207)
Q Consensus 29 ~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~ 106 (207)
..+.+..+.....|.|.|.+|+||.+++.+|.+|||+++.+.|+.+ .+++|++++.+++|+|||+|.|.+
T Consensus 169 Grl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~L-------- 240 (683)
T KOG0696|consen 169 GRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKL-------- 240 (683)
T ss_pred ceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEec--------
Confidence 4567778889999999999999999999999999999999987654 488999999999999999999995
Q ss_pred eccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645 107 FEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161 (207)
Q Consensus 107 ~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~ 161 (207)
.| .+ ....|.++|||+++.++++|+|...+.++++ .+.+.+.||.|.+
T Consensus 241 ----kp-~D-kdrRlsiEvWDWDrTsRNDFMGslSFgisEl-~K~p~~GWyKlLs 288 (683)
T KOG0696|consen 241 ----KP-SD-KDRRLSIEVWDWDRTSRNDFMGSLSFGISEL-QKAPVDGWYKLLS 288 (683)
T ss_pred ----cc-cc-ccceeEEEEecccccccccccceecccHHHH-hhcchhhHHHHhh
Confidence 34 33 5679999999999999999999999999998 5568899999985
No 66
>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme
Probab=99.71 E-value=1e-16 Score=116.65 Aligned_cols=106 Identities=26% Similarity=0.396 Sum_probs=88.1
Q ss_pred cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645 38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM 117 (207)
Q Consensus 38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~ 117 (207)
+.+.|+|+|++|++|. .+.+||||++.+. .++++|+++.++.+|.|+|.|.|.+. .+..++.
T Consensus 2 ~~~~l~V~v~~a~~L~----~~~~dpyv~v~~~---~~~~kT~~~~~t~nP~wne~f~f~~~-----------~~~~~l~ 63 (111)
T cd04011 2 QDFQVRVRVIEARQLV----GGNIDPVVKVEVG---GQKKYTSVKKGTNCPFYNEYFFFNFH-----------ESPDELF 63 (111)
T ss_pred CcEEEEEEEEEcccCC----CCCCCCEEEEEEC---CEeeeeeEEeccCCCccccEEEEecC-----------CCHHHHh
Confidence 5678999999999998 5689999999993 46789999999999999999999841 2223334
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeecccc---ccceEEEccc
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ---TIEEWRELQS 161 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~---~~~~w~~L~~ 161 (207)
...|.|.|||.+.++++++||++.++|+++..+. -...|+.|.+
T Consensus 64 ~~~l~i~V~d~~~~~~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~ 110 (111)
T cd04011 64 DKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD 110 (111)
T ss_pred cCeEEEEEEcCcccccCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence 5789999999999888999999999999986653 3468999975
No 67
>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.71 E-value=3.4e-16 Score=114.31 Aligned_cols=113 Identities=39% Similarity=0.605 Sum_probs=96.1
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|+|.|++|++|+..+..+.+|||+++.+. +...++|+++.++.+|.|+|+|.|.+ + +.....+
T Consensus 1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~--~~~~~~T~v~~~~~~P~Wne~f~~~~-------------~--~~~~~~l 63 (115)
T cd04040 1 LTVDVISAENLPSADRNGKSDPFVKFYLN--GEKVFKTKTIKKTLNPVWNESFEVPV-------------P--SRVRAVL 63 (115)
T ss_pred CEEEEEeeeCCCCCCCCCCCCCeEEEEEC--CCcceeeceecCCCCCcccccEEEEe-------------c--cCCCCEE
Confidence 57899999999998878889999999983 44568999999999999999999984 2 1144789
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEe
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYY 171 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~ 171 (207)
.|++||++..+++++||++.+++.++..+.....|++|.+..+...+.++
T Consensus 64 ~~~v~d~~~~~~~~~iG~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~ 113 (115)
T cd04040 64 KVEVYDWDRGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF 113 (115)
T ss_pred EEEEEeCCCCCCCCceEEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence 99999999888899999999999999888788899999987776555554
No 68
>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene. In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai
Probab=99.70 E-value=3.3e-16 Score=116.04 Aligned_cols=110 Identities=31% Similarity=0.435 Sum_probs=92.5
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCc-CC
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD-AM 117 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~-~~ 117 (207)
+.|.|+|++|++|+..+..+.+|||+++.+ ..+..+|++.. ++.+|.|+|.|.|.+ +... ..
T Consensus 1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~---~~~~~~T~~~~~~t~nP~Wne~f~f~v-------------~~~~~~~ 64 (124)
T cd04049 1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQC---RTQERKSKVAKGDGRNPEWNEKFKFTV-------------EYPGWGG 64 (124)
T ss_pred CeEEEEEEecCCCCCCCCCCCcCceEEEEE---CCEeeeeeEcCCCCCCCcccceEEEEe-------------cCcccCC
Confidence 578999999999998887889999999998 34567888877 489999999999985 2111 12
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
...|.|+|||.+....+++||++.++|.++..+.....|+.|.+....
T Consensus 65 ~~~l~v~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~~l~p~~~~ 112 (124)
T cd04049 65 DTKLILRIMDKDNFSDDDFIGEATIHLKGLFEEGVEPGTAELVPAKYN 112 (124)
T ss_pred CCEEEEEEEECccCCCCCeEEEEEEEhHHhhhCCCCcCceEeeccceE
Confidence 468999999999888899999999999999888888999999986655
No 69
>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.69 E-value=8e-16 Score=113.71 Aligned_cols=107 Identities=25% Similarity=0.381 Sum_probs=91.2
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
+.|+|+|++|++|...+..+.+|||+++.+ .+....+|+++..+.+|.|+|.|.|.+ .. ...
T Consensus 1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~--~~~~~~kT~~~~~t~~P~Wne~f~~~v-------------~~---~~~ 62 (120)
T cd04045 1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLV--NGIVKGRTVTISNTLNPVWDEVLYVPV-------------TS---PNQ 62 (120)
T ss_pred CeEEEEEEeeECCCCccCCCCcCCEEEEEE--CCEEeeceeEECCCcCCccCceEEEEe-------------cC---CCC
Confidence 468999999999999988899999999998 234578999999999999999999984 21 236
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
.|.|+|||++..+.+++||++.+++.++..+ ....||.|.+....
T Consensus 63 ~L~v~v~d~~~~~~d~~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~ 107 (120)
T cd04045 63 KITLEVMDYEKVGKDRSLGSVEINVSDLIKK-NEDGKYVEYDDEEE 107 (120)
T ss_pred EEEEEEEECCCCCCCCeeeEEEEeHHHhhCC-CCCceEEecCCCcc
Confidence 8999999999999999999999999998665 67899999876543
No 70
>KOG1030|consensus
Probab=99.69 E-value=2.5e-16 Score=120.54 Aligned_cols=97 Identities=37% Similarity=0.538 Sum_probs=86.1
Q ss_pred cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645 38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM 117 (207)
Q Consensus 38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~ 117 (207)
..+-|+|++.+|.||..++..+.+||||.+.+ +.++.+|+++..++||+|||.|.|.+ .+ .
T Consensus 4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~l---g~q~lkT~~v~~n~NPeWNe~ltf~v---------------~d-~ 64 (168)
T KOG1030|consen 4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLEL---GNQKLKTRVVYKNLNPEWNEELTFTV---------------KD-P 64 (168)
T ss_pred cceEEEEEEEeecCeeeeccccCCCCeEEEEE---CCeeeeeeeecCCCCCcccceEEEEe---------------cC-C
Confidence 35789999999999999998899999999999 67899999999999999999999995 23 4
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeecccccc
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI 153 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~ 153 (207)
...|.+.|||+|.++.|+++|.|.|+|..+......
T Consensus 65 ~~~lkv~VyD~D~fs~dD~mG~A~I~l~p~~~~~~~ 100 (168)
T KOG1030|consen 65 NTPLKVTVYDKDTFSSDDFMGEATIPLKPLLEAQKM 100 (168)
T ss_pred CceEEEEEEeCCCCCcccccceeeeccHHHHHHhhh
Confidence 579999999999999999999999999987654333
No 71
>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins. A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are
Probab=99.68 E-value=1.1e-15 Score=113.40 Aligned_cols=104 Identities=25% Similarity=0.396 Sum_probs=87.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|+|+|++|++|...+..+.+|||+++.+ ++.+.++|++++++.+|.|+|.|.|.+ + ....|
T Consensus 2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~--~~~~~~kT~v~~~t~nP~Wne~f~~~~-------------~----~~~~l 62 (123)
T cd08382 2 VRLTVLCADGLAKRDLFRLPDPFAVITV--DGGQTHSTDVAKKTLDPKWNEHFDLTV-------------G----PSSII 62 (123)
T ss_pred eEEEEEEecCCCccCCCCCCCcEEEEEE--CCccceEccEEcCCCCCcccceEEEEe-------------C----CCCEE
Confidence 7899999999999888899999999998 346788999999999999999999994 3 14689
Q ss_pred EEEEEecCCCCC--CceeEEEEEeceeecccc-ccceEEEccccCC
Q psy17645 122 VFAIFDFDRFSK--HDQIGEVKVALCQIDLAQ-TIEEWRELQSVEG 164 (207)
Q Consensus 122 ~i~v~d~~~~~~--~~~lG~~~v~L~~l~~~~-~~~~w~~L~~~~~ 164 (207)
.|+|||++..+. +++||++.+++.++.... ....|++|.....
T Consensus 63 ~i~V~d~~~~~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~ 108 (123)
T cd08382 63 TIQVFDQKKFKKKDQGFLGCVRIRANAVLPLKDTGYQRLDLRKLKK 108 (123)
T ss_pred EEEEEECCCCCCCCCceEeEEEEEHHHccccCCCccceeEeecCCC
Confidence 999999988765 579999999999986443 4478999966443
No 72
>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap
Probab=99.68 E-value=1.4e-15 Score=112.90 Aligned_cols=107 Identities=27% Similarity=0.420 Sum_probs=88.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
+.++|+|++|++|+..+..+.+|||+++..........+|+++.++.+|.|||.|.|.+ ... ...
T Consensus 1 ~~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i-------------~~~--~~~ 65 (126)
T cd04043 1 HLFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEV-------------PAG--EPL 65 (126)
T ss_pred CEEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEc-------------CCC--CCC
Confidence 46899999999999998889999999998743334578999999999999999999984 321 346
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeecc---ccccceEEEccc
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDL---AQTIEEWRELQS 161 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~---~~~~~~w~~L~~ 161 (207)
.|.|+||+.+..+++++||++.++|..+.. +.....|++|.+
T Consensus 66 ~L~i~v~d~d~~~~~~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~ 110 (126)
T cd04043 66 WISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDLDT 110 (126)
T ss_pred EEEEEEEECCCCCCCceEEEEEEecCHHHcCCCCCCceEEEEcCC
Confidence 899999999988889999999999987543 335678999974
No 73
>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy
Probab=99.68 E-value=5.3e-16 Score=119.23 Aligned_cols=105 Identities=38% Similarity=0.576 Sum_probs=88.3
Q ss_pred EECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--------------------------ceEEeeeecCCCCC
Q psy17645 35 YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--------------------------KKFETKVHRKTLNP 88 (207)
Q Consensus 35 y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--------------------------~~~~T~~~~~t~~P 88 (207)
..++.+.|.|+|++|++|...+..|.+|||+++.+.+... ..++|+++.++.+|
T Consensus 23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP 102 (153)
T cd08676 23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP 102 (153)
T ss_pred cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence 4556889999999999999999889999999999854321 24789999999999
Q ss_pred eEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645 89 VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159 (207)
Q Consensus 89 ~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L 159 (207)
.|+|.|.|.+ ..+....|.|+|||++ +++||++.+++.++. +...++||.|
T Consensus 103 ~WnE~F~f~v---------------~~~~~~~L~i~V~D~d----d~~IG~v~i~l~~l~-~~~~d~W~~L 153 (153)
T cd08676 103 VWNETFRFEV---------------EDVSNDQLHLDIWDHD----DDFLGCVNIPLKDLP-SCGLDSWFKL 153 (153)
T ss_pred ccccEEEEEe---------------ccCCCCEEEEEEEecC----CCeEEEEEEEHHHhC-CCCCCCeEeC
Confidence 9999999985 2224578999999998 789999999999987 4567999987
No 74
>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.67 E-value=1.8e-15 Score=111.68 Aligned_cols=121 Identities=31% Similarity=0.502 Sum_probs=94.0
Q ss_pred CEEEEEEEEeeCCCCCC-CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 40 NSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~-~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
+.|.|+|.+|++|+..+ ..+.+|||+.+.+... ....+|+++.++.+|.|+|.|.|.+ . ...
T Consensus 2 g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~-~~~~kT~~~~~~~~P~Wne~~~~~v-------------~---~~~ 64 (124)
T cd04044 2 GVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNR-RELARTKVKKDTSNPVWNETKYILV-------------N---SLT 64 (124)
T ss_pred eEEEEEEEcccCCCcccccCCCCCCeEEEEECCC-CcceEeeeecCCCCCcceEEEEEEe-------------C---CCC
Confidence 57999999999999654 3467899999998421 4678999999999999999999985 2 135
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEeceeeccccccce-EEEccccCCCCceEEeecCCCCceeeeceeeeec
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WRELQSVEGEGGQVYYLDGPKGNLATGKKALYLP 189 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~-w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~ 189 (207)
..|.|+|||.+..+.+++||.+.++|.++..+..... |..+.. .+. ..|+|.+ .+.|.|
T Consensus 65 ~~l~~~v~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~-~~k---------~~G~i~~--~l~~~p 124 (124)
T cd04044 65 EPLNLTVYDFNDKRKDKLIGTAEFDLSSLLQNPEQENLTKNLLR-NGK---------PVGELNY--DLRFFP 124 (124)
T ss_pred CEEEEEEEecCCCCCCceeEEEEEEHHHhccCccccCcchhhhc-CCc---------cceEEEE--EEEeCC
Confidence 7899999999988889999999999999977766654 444432 221 3488888 444655
No 75
>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev
Probab=99.67 E-value=2.1e-15 Score=112.44 Aligned_cols=114 Identities=30% Similarity=0.468 Sum_probs=91.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
.|+|+|++|++|+..+..+.+|||+.+.+ +....+|+++.++.+|.|+|.|.|.+ .. ....
T Consensus 2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~---~~~~~kT~~v~~t~~P~Wne~f~f~~------------~~----~~~~ 62 (127)
T cd04027 2 KISITVVCAQGLIAKDKTGTSDPYVTVQV---GKTKKRTKTIPQNLNPVWNEKFHFEC------------HN----SSDR 62 (127)
T ss_pred eEEEEEEECcCCcCCCCCCCcCcEEEEEE---CCEeeecceecCCCCCccceEEEEEe------------cC----CCCE
Confidence 68999999999999988889999999998 34578999999999999999999984 11 2357
Q ss_pred EEEEEEecCCC-----------CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeee
Q psy17645 121 LVFAIFDFDRF-----------SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATG 182 (207)
Q Consensus 121 l~i~v~d~~~~-----------~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~ 182 (207)
+.|+|||++.. +.+++||++.+++.++. .....|+.|.+..... ...|+|.++
T Consensus 63 l~i~v~d~d~~~~~~~~~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~-------~~~G~i~~~ 126 (127)
T cd04027 63 IKVRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKS-------AVSGAIRLH 126 (127)
T ss_pred EEEEEEECCCCcccccceeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCC-------cEeEEEEEE
Confidence 99999998752 46889999999999874 4467999998765331 124777763
No 76
>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon. A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=99.66 E-value=2.8e-15 Score=112.34 Aligned_cols=103 Identities=23% Similarity=0.409 Sum_probs=87.6
Q ss_pred CCEEEEEEEEeeCCCCCCC----------CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceec
Q psy17645 39 ANSLSVTVIQAEDLPALDM----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFE 108 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~----------~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~ 108 (207)
.+.|+|+|++|++|...+. .+.+||||++.+ .+.+..+|++++.+.+|.|||.|.|.+
T Consensus 3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~--~~~~~~kT~~~~~t~~P~Wne~f~~~v---------- 70 (132)
T cd04014 3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDV--DDTHIGKTSTKPKTNSPVWNEEFTTEV---------- 70 (132)
T ss_pred ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEE--CCEEEeEEeEcCCCCCCCcceeEEEEc----------
Confidence 4679999999999988775 267999999998 344567999999999999999999994
Q ss_pred cCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecc--ccccceEEEcc
Q psy17645 109 QGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL--AQTIEEWRELQ 160 (207)
Q Consensus 109 ~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~--~~~~~~w~~L~ 160 (207)
+ ....+.|.||+.+..+.++++|++.++|.++.. +.....|++|.
T Consensus 71 ---~----~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~ 117 (132)
T cd04014 71 ---H----NGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE 117 (132)
T ss_pred ---C----CCCEEEEEEEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc
Confidence 3 346899999999888888999999999999876 46678999996
No 77
>cd04046 C2_Calpain C2 domain present in Calpain proteins. A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic
Probab=99.66 E-value=4.1e-15 Score=110.70 Aligned_cols=123 Identities=19% Similarity=0.278 Sum_probs=95.3
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
...++|+|++|++|...+..|.+|||+.+.+ +.+.++|++++.+.+|.|+|.|.|.. . . ..
T Consensus 2 ~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~---~~~~~kT~v~~~t~nP~Wne~f~f~~-------------~--~-~~ 62 (126)
T cd04046 2 QVVTQVHVHSAEGLSKQDSGGGADPYVIIKC---EGESVRSPVQKDTLSPEFDTQAIFYR-------------K--K-PR 62 (126)
T ss_pred cEEEEEEEEeCcCCCCCCCCCCcCccEEEEE---CCEEEEeCccCCCCCCcccceEEEEe-------------c--C-CC
Confidence 3578999999999999888899999999987 34678999999999999999999974 1 1 35
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecc
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPN 190 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~ 190 (207)
..|.|+|||++... +++||++.+++.++. ....+|+.|...... .-....|+|.+ ++.+.++
T Consensus 63 ~~l~i~V~d~~~~~-d~~lG~~~~~l~~~~--~~~~~~~~l~~~~~~-----~~~~~~G~i~~--~~~~~~~ 124 (126)
T cd04046 63 SPIKIQVWNSNLLC-DEFLGQATLSADPND--SQTLRTLPLRKRGRD-----AAGEVPGTISV--KVTSSDD 124 (126)
T ss_pred CEEEEEEEECCCCC-CCceEEEEEecccCC--CcCceEEEcccCCCC-----CCCCCCCEEEE--EEEEccc
Confidence 68999999998764 799999999998753 344578888732221 12235688888 4445443
No 78
>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD). PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM
Probab=99.66 E-value=1.3e-15 Score=110.58 Aligned_cols=95 Identities=29% Similarity=0.440 Sum_probs=79.6
Q ss_pred CEEEEEEEEeeCCCCCCCC----CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645 40 NSLSVTVIQAEDLPALDMG----GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD 115 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~----g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~ 115 (207)
+.|.|+|++|++|+..+.. +.+|||+++.+ +.+.++|++++++.+|.|+|.|.|.+ ...+
T Consensus 1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~---~~~~~kT~v~~~t~nPvWne~f~f~v-------------~~~~ 64 (108)
T cd04039 1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISF---GRRVFRTSWRRHTLNPVFNERLAFEV-------------YPHE 64 (108)
T ss_pred CEEEEEEEeeeCCCCccccCCCCCccCceEEEEE---CCEeEeeeeecCCCCCcccceEEEEE-------------eCcc
Confidence 5799999999999987532 35899999998 45678999999999999999999984 2122
Q ss_pred CCCceEEEEEEecCCCCCCceeEEEEEeceeecccc
Q psy17645 116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151 (207)
Q Consensus 116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~ 151 (207)
....|.|.|||++..+++++||++.++|.++..+.
T Consensus 65 -~~~~L~~~V~D~d~~~~dd~IG~~~l~L~~l~~~~ 99 (108)
T cd04039 65 -KNFDIQFKVLDKDKFSFNDYVATGSLSVQELLNAA 99 (108)
T ss_pred -CCCEEEEEEEECCCCCCCcceEEEEEEHHHHHhhC
Confidence 33589999999999999999999999999986553
No 79
>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.66 E-value=3.1e-15 Score=111.33 Aligned_cols=120 Identities=25% Similarity=0.422 Sum_probs=95.4
Q ss_pred EEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEE
Q psy17645 46 VIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAI 125 (207)
Q Consensus 46 I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v 125 (207)
|++|++|+. ..+.+|||+++.+ +....+|++++++.+|.|+|.|.|.+ .........+.|+|
T Consensus 2 vi~a~~L~~--~~g~~Dpyv~v~~---~~~~~kT~v~~~~~nP~Wne~f~f~~-------------~~~~~~~~~l~~~v 63 (127)
T cd08373 2 VVSLKNLPG--LKGKGDRIAKVTF---RGVKKKTRVLENELNPVWNETFEWPL-------------AGSPDPDESLEIVV 63 (127)
T ss_pred eEEeeCCcc--cCCCCCCEEEEEE---CCEeeecceeCCCcCCcccceEEEEe-------------CCCcCCCCEEEEEE
Confidence 678999998 5788999999998 34578999999999999999999985 21112457899999
Q ss_pred EecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceeeeecceee
Q psy17645 126 FDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGV 193 (207)
Q Consensus 126 ~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~~~~ 193 (207)
|+++..+.+++||++.++|.++..+.....|+.|.+..+. ...|++.+ .+.|.|.-..
T Consensus 64 ~d~~~~~~d~~iG~~~~~l~~l~~~~~~~~~~~L~~~~~~--------~~~~~l~l--~~~~~~~~~~ 121 (127)
T cd08373 64 KDYEKVGRNRLIGSATVSLQDLVSEGLLEVTEPLLDSNGR--------PTGATISL--EVSYQPPDGA 121 (127)
T ss_pred EECCCCCCCceEEEEEEEhhHcccCCceEEEEeCcCCCCC--------cccEEEEE--EEEEeCCCCc
Confidence 9999988899999999999999888888899999765443 12356666 5557665443
No 80
>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins. SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such
Probab=99.65 E-value=2.1e-15 Score=111.78 Aligned_cols=115 Identities=26% Similarity=0.286 Sum_probs=94.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCc--CC
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD--AM 117 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~--~~ 117 (207)
.|+|+|++|++|+..+..+.+|||+.+.+. +..+++|++.. .+.+|.|+|.|.|.+ +... ..
T Consensus 1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~--~~~~~~T~~~~~~~~~P~Wne~f~f~v-------------~~~~~~~~ 65 (125)
T cd04051 1 TLEITIISAEDLKNVNLFGKMKVYAVVWID--PSHKQSTPVDRDGGTNPTWNETLRFPL-------------DERLLQQG 65 (125)
T ss_pred CEEEEEEEcccCCCCCcccCCceEEEEEEC--CCcccccccccCCCCCCCCCCEEEEEc-------------ChHhcccC
Confidence 378999999999998888999999999984 23678888875 589999999999984 3221 12
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeecccccc-----ceEEEccccCCCCceEE
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI-----EEWRELQSVEGEGGQVY 170 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~-----~~w~~L~~~~~~~~~~~ 170 (207)
...|.|+|||++.++.+++||++.++|.++..+... ..||.|....++..+.+
T Consensus 66 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~ 123 (125)
T cd04051 66 RLALTIEVYCERPSLGDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVL 123 (125)
T ss_pred ccEEEEEEEECCCCCCCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEE
Confidence 578999999999888899999999999998766543 68999998777765555
No 81
>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins. C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi
Probab=99.65 E-value=6.7e-15 Score=109.13 Aligned_cols=102 Identities=24% Similarity=0.321 Sum_probs=82.2
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
+.|.|+|++|++|...+ ..+||+++.+ +.++.+|++.+. .+|.|||.|.|.+ .+ ...
T Consensus 2 ~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~---g~~k~kT~v~~~-~nP~WnE~F~F~~---------------~~-~~~ 58 (127)
T cd08394 2 SLLCVLVKKAKLDGAPD---KFNTYVTLKV---QNVKSTTIAVRG-SQPCWEQDFMFEI---------------NR-LDL 58 (127)
T ss_pred ceEEEEEEEeeCCCCCC---CCCCeEEEEE---CCEEeEeeECCC-CCCceeeEEEEEE---------------cC-CCC
Confidence 46899999999997543 4589999999 457788888877 4999999999995 22 234
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeecccccc--ceEEEccccCCC
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI--EEWRELQSVEGE 165 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~--~~w~~L~~~~~~ 165 (207)
.|.|+|||++.+ .|+++|++.++|.++..+... .+||+|.+.-..
T Consensus 59 ~L~v~V~dkd~~-~DD~lG~v~i~L~~v~~~~~~~~~~Wy~L~~~~~~ 105 (127)
T cd08394 59 GLVIELWNKGLI-WDTLVGTVWIPLSTIRQSNEEGPGEWLTLDSEVNM 105 (127)
T ss_pred EEEEEEEeCCCc-CCCceEEEEEEhHHcccCCCCCCCccEecChHHhc
Confidence 599999999865 889999999999998766444 699999964333
No 82
>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.63 E-value=4.1e-15 Score=114.08 Aligned_cols=108 Identities=30% Similarity=0.455 Sum_probs=87.5
Q ss_pred EEEEEEEEeeCCCCCCCCC--------------CCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccce
Q psy17645 41 SLSVTVIQAEDLPALDMGG--------------TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEV 106 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g--------------~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~ 106 (207)
.|.|+|++|++|+..+..+ .+||||++.+ ..++.+|++++++.+|.|||.|.|.+
T Consensus 1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~---~g~~~kT~v~~~t~nPvWNE~f~f~v-------- 69 (151)
T cd04018 1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSF---AGQKVKTSVKKNSYNPEWNEQIVFPE-------- 69 (151)
T ss_pred CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEE---CCEeeecceEcCCCCCCcceEEEEEe--------
Confidence 3789999999999887443 6899999998 34567999999999999999999984
Q ss_pred eccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccc-------cceEEEccccCCC
Q psy17645 107 FEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-------IEEWRELQSVEGE 165 (207)
Q Consensus 107 ~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~-------~~~w~~L~~~~~~ 165 (207)
.. .. ....|.|+|||++..++++++|++.+++.++..... ..+|+.|...+..
T Consensus 70 ----~~-p~-~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~ 129 (151)
T cd04018 70 ----MF-PP-LCERIKIQIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE 129 (151)
T ss_pred ----eC-CC-cCCEEEEEEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence 11 11 246899999999998899999999999998755432 2489999876655
No 83
>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family. SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas
Probab=99.62 E-value=1.4e-14 Score=110.37 Aligned_cols=126 Identities=25% Similarity=0.373 Sum_probs=95.1
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
.+.|.|.|++|++|+..+ ++||.+.+ ++....+|+++.++.+|.|+|.|.|.. ++ .-
T Consensus 10 ~~sL~v~V~EAk~Lp~~~-----~~Y~~i~L--d~~~vaRT~v~~~~~nP~W~E~F~f~~------------~~----~~ 66 (146)
T cd04013 10 ENSLKLWIIEAKGLPPKK-----RYYCELCL--DKTLYARTTSKLKTDTLFWGEHFEFSN------------LP----PV 66 (146)
T ss_pred EEEEEEEEEEccCCCCcC-----CceEEEEE--CCEEEEEEEEEcCCCCCcceeeEEecC------------CC----cc
Confidence 456899999999998764 79999999 345567999999999999999999985 44 23
Q ss_pred ceEEEEEEecCC-C---CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCC--CCceeeeceeeeecc
Q psy17645 119 KTLVFAIFDFDR-F---SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGP--KGNLATGKKALYLPN 190 (207)
Q Consensus 119 ~~l~i~v~d~~~-~---~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~--~g~i~~~~~~~~~~~ 190 (207)
..++|.||..+. . ..+.+||.+.|++.++..+...+.||+|.+..+..... ..+.. .+.|++ ++.|.+.
T Consensus 67 ~~l~v~v~k~~~~~~~~~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~-~~~~~~~~~~lri--k~rf~~~ 141 (146)
T cd04013 67 SVITVNLYRESDKKKKKDKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSG-GKEGKGESPSIRI--KARYQST 141 (146)
T ss_pred cEEEEEEEEccCccccccCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccc-cccccCCCCEEEE--EEEEEEe
Confidence 579999986542 2 25789999999999999888999999999866653111 11122 245555 6666653
No 84
>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs). RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2
Probab=99.62 E-value=1.7e-14 Score=105.41 Aligned_cols=114 Identities=34% Similarity=0.501 Sum_probs=85.6
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|.|+|++|++|+.. +.+|||+.+.+. +.+.++|++++. .+|.|+|+|.|. ++..++....+
T Consensus 2 L~v~vi~a~~l~~~---~~~dpyv~v~~~--~~~~~kT~~~~~-~~P~Wne~f~f~-------------v~~~~~~~~~l 62 (117)
T cd08383 2 LRLRILEAKNLPSK---GTRDPYCTVSLD--QVEVARTKTVEK-LNPFWGEEFVFD-------------DPPPDVTFFTL 62 (117)
T ss_pred eEEEEEEecCCCcC---CCCCceEEEEEC--CEEeEecceEEC-CCCcccceEEEe-------------cCCccccEEEE
Confidence 78999999999876 789999999983 345678999988 999999999998 44334344678
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeec
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGK 183 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~ 183 (207)
.+.+|+.+....+.++|.+. +..+..+...++|++|.+.... ....|+|.+.+
T Consensus 63 ~i~v~d~~~~~~~~~~g~v~--l~~~~~~~~~~~w~~L~~~~~~-------~~~~G~l~l~~ 115 (117)
T cd08383 63 SFYNKDKRSKDRDIVIGKVA--LSKLDLGQGKDEWFPLTPVDPD-------SEVQGSVRLRA 115 (117)
T ss_pred EEEEEecccCCCeeEEEEEE--ecCcCCCCcceeEEECccCCCC-------CCcCceEEEEE
Confidence 88899988766566666655 4455556778899999876542 12357887744
No 85
>cd04032 C2_Perforin C2 domain of Perforin. Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few
Probab=99.59 E-value=1.8e-14 Score=107.46 Aligned_cols=107 Identities=27% Similarity=0.295 Sum_probs=85.0
Q ss_pred cCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645 23 DLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN 102 (207)
Q Consensus 23 ~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~ 102 (207)
..|..+|. ...-....+.|.|+|.+|++|+. +..+.+|||+++.+ +.+.++|++++++.+|.|+|+|.|..
T Consensus 12 ~~~~~~~~-~~~~~~~~~~L~V~V~~A~~L~~-d~~g~~DPYVkV~~---~~~~~kT~vi~~t~nPvWNE~F~f~~---- 82 (127)
T cd04032 12 SSPNVNSN-CCPTRRGLATLTVTVLRATGLWG-DYFTSTDGYVKVFF---GGQEKRTEVIWNNNNPRWNATFDFGS---- 82 (127)
T ss_pred CCCCcCCC-cCcCcCCcEEEEEEEEECCCCCc-CcCCCCCeEEEEEE---CCccccCceecCCCCCcCCCEEEEec----
Confidence 34555554 22224467899999999999984 55678999999998 34588999999999999999999973
Q ss_pred ccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~ 148 (207)
.... ....|.|+|||++..+.+++||++.++|....
T Consensus 83 --------~~~~--~~~~L~v~V~D~d~~s~dd~IG~~~i~l~~~~ 118 (127)
T cd04032 83 --------VELS--PGGKLRFEVWDRDNGWDDDLLGTCSVVPEAGV 118 (127)
T ss_pred --------ccCC--CCCEEEEEEEeCCCCCCCCeeEEEEEEecCCc
Confidence 2211 45799999999999999999999999998654
No 86
>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1). NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C
Probab=99.58 E-value=9.4e-14 Score=104.94 Aligned_cols=116 Identities=27% Similarity=0.329 Sum_probs=90.2
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC----------ceEEeeeecCCCCCeE-ecEEEEeeecccccceecc
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK----------KKFETKVHRKTLNPVF-NETFVFKVSFLNRSEVFEQ 109 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~----------~~~~T~~~~~t~~P~w-~e~~~f~~~~~~~~~~~~~ 109 (207)
...|.+++|+||+ .+..|.+|||+++.+.+.+. +.++|+++.++.+|.| +|.|.|.+
T Consensus 2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v----------- 69 (137)
T cd08691 2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVG----------- 69 (137)
T ss_pred EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEc-----------
Confidence 3678999999998 66678999999999976442 4789999999999999 99999983
Q ss_pred CcccCcCCCceEEEEEEecCCCCC---CceeEEEEEeceeecccc---ccceEEEccccCCCCceEEeecCCCCceee
Q psy17645 110 GVPYADAMNKTLVFAIFDFDRFSK---HDQIGEVKVALCQIDLAQ---TIEEWRELQSVEGEGGQVYYLDGPKGNLAT 181 (207)
Q Consensus 110 ~~~~~~~~~~~l~i~v~d~~~~~~---~~~lG~~~v~L~~l~~~~---~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~ 181 (207)
. ....|.++|||++..++ +++||++.+++.++..+. ....|+.|..... .+...|++.+
T Consensus 70 --~----~~~~L~v~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~-------~s~v~G~~~l 134 (137)
T cd08691 70 --L----PTDVLEIEVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTP-------TDHVSGQLTF 134 (137)
T ss_pred --C----CCCEEEEEEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCC-------CCcEEEEEEE
Confidence 2 23589999999765333 689999999999986552 3457998875432 3444577776
No 87
>cd04048 C2A_Copine C2 domain first repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma
Probab=99.56 E-value=7e-14 Score=103.07 Aligned_cols=102 Identities=28% Similarity=0.387 Sum_probs=85.1
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEEECCC----CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 45 TVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 45 ~I~~a~nL~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
..++|++|+..+..+.+|||+++.+.+.. ....+|++++++.+|.|+|.|.|.+ ... ....
T Consensus 5 ~~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~-------------~~~--~~~~ 69 (120)
T cd04048 5 LSISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDY-------------YFE--EVQK 69 (120)
T ss_pred EEEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEE-------------EeE--eeeE
Confidence 35789999999888999999999996543 1358999999999999999999973 211 2358
Q ss_pred EEEEEEecCC----CCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645 121 LVFAIFDFDR----FSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161 (207)
Q Consensus 121 l~i~v~d~~~----~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~ 161 (207)
+.|+|||++. .+++++||++.+++.++..+.....|+.|.+
T Consensus 70 l~~~V~d~d~~~~~~~~~d~iG~~~i~l~~l~~~~~~~~~~~l~~ 114 (120)
T cd04048 70 LRFEVYDVDSKSKDLSDHDFLGEAECTLGEIVSSPGQKLTLPLKG 114 (120)
T ss_pred EEEEEEEecCCcCCCCCCcEEEEEEEEHHHHhcCCCcEEEEEccC
Confidence 9999999987 7889999999999999987777888999954
No 88
>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP). ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i
Probab=99.55 E-value=7e-14 Score=106.64 Aligned_cols=91 Identities=38% Similarity=0.618 Sum_probs=80.3
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
+.|+|+|++|+||+..+. +.+|||+.+.+ +.+..+|++++++.+|.|+|.|.|.+ + + ...
T Consensus 2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~---g~~~~kT~vvk~t~nP~WnE~f~f~i-------------~--~-~~~ 61 (145)
T cd04038 2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTL---GNQKVKTRVIKKNLNPVWNEELTLSV-------------P--N-PMA 61 (145)
T ss_pred eEEEEEEEeeECCCCCCC-CCcCcEEEEEE---CCEEEEeeeEcCCCCCeecccEEEEe-------------c--C-CCC
Confidence 579999999999998886 88999999998 45789999999999999999999985 2 2 256
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeeccc
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~ 150 (207)
.+.|+|||++.++.+++||++.+++.++...
T Consensus 62 ~l~~~V~D~d~~~~dd~iG~a~i~l~~l~~~ 92 (145)
T cd04038 62 PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEA 92 (145)
T ss_pred EEEEEEEECCCCCCCCEEEEEEEEHHHhhhh
Confidence 8999999999999999999999999987544
No 89
>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.55 E-value=6.4e-14 Score=104.03 Aligned_cols=92 Identities=33% Similarity=0.446 Sum_probs=77.1
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
.|+|.|++|++|...+..+.+|||+++.+.. .....+|++++++.+|.|+|.|.|.+ . ......
T Consensus 1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~-~~~~~kT~~v~~t~nP~Wne~f~f~~-------------~--~~~~~~ 64 (124)
T cd04037 1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGK-KKINDRDNYIPNTLNPVFGKMFELEA-------------T--LPGNSI 64 (124)
T ss_pred CEEEEEEECcCCCCCCCCCCCCcEEEEEECC-eeccceeeEEECCCCCccceEEEEEe-------------c--CCCCCE
Confidence 3789999999999998889999999999832 11346788888999999999999984 1 123468
Q ss_pred EEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645 121 LVFAIFDFDRFSKHDQIGEVKVALCQID 148 (207)
Q Consensus 121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~ 148 (207)
+.|+|||++.++.+++||++.++|.+..
T Consensus 65 L~~~V~d~d~~~~dd~iG~~~i~l~~~~ 92 (124)
T cd04037 65 LKISVMDYDLLGSDDLIGETVIDLEDRF 92 (124)
T ss_pred EEEEEEECCCCCCCceeEEEEEeecccc
Confidence 9999999999989999999999998764
No 90
>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC). PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking
Probab=99.55 E-value=1.9e-13 Score=101.30 Aligned_cols=107 Identities=32% Similarity=0.455 Sum_probs=85.5
Q ss_pred CEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEECCC---CceEEeeeecCCC-CCeEecEEEEeeecccccceeccCccc
Q psy17645 40 NSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDK---KKKFETKVHRKTL-NPVFNETFVFKVSFLNRSEVFEQGVPY 113 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~--~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~-~P~w~e~~~f~~~~~~~~~~~~~~~~~ 113 (207)
..|+|+|++|+||+..+ ..+..|||+++.+.... ..+.+|+++..+. +|.|+|+|.|.+ ..
T Consensus 2 ~~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~-------------~~ 68 (128)
T cd00275 2 LTLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDV-------------TV 68 (128)
T ss_pred eEEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEE-------------eC
Confidence 46899999999999877 47789999999986433 3578999987665 999999999985 21
Q ss_pred CcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
. ....+.++|||.+.. +++++|++.+++.++..+ ..|+.|....+.
T Consensus 69 ~--~~~~l~~~V~d~~~~-~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~ 114 (128)
T cd00275 69 P--ELAFLRFVVYDEDSG-DDDFLGQACLPLDSLRQG---YRHVPLLDSKGE 114 (128)
T ss_pred C--CeEEEEEEEEeCCCC-CCcEeEEEEEEhHHhcCc---eEEEEecCCCCC
Confidence 1 235789999999987 889999999999998543 468888765553
No 91
>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase. E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e
Probab=99.54 E-value=2.5e-13 Score=100.99 Aligned_cols=104 Identities=28% Similarity=0.355 Sum_probs=83.9
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
.+|.|+|.+|+ |...+..+.+|||+.+.+. +....+|+++..+.+|.|+|.|.|.+ + ...
T Consensus 2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~--~~~~~kT~v~~~t~~P~Wne~f~~~~-------------~----~~~ 61 (125)
T cd04021 2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVD--GQPPKKTEVSKKTSNPKWNEHFTVLV-------------T----PQS 61 (125)
T ss_pred ceEEEEEEeeE-CCCCCcCCCCCeEEEEEEC--CcccEEeeeeCCCCCCccccEEEEEe-------------C----CCC
Confidence 46899999998 5555557889999999983 33478999999999999999999984 2 236
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeeccccc-----cceEEEccccC
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-----IEEWRELQSVE 163 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~-----~~~w~~L~~~~ 163 (207)
.|.|+|||++..+.+++||++.++|.++..+.. ...|++|....
T Consensus 62 ~l~~~V~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~ 110 (125)
T cd04021 62 TLEFKVWSHHTLKADVLLGEASLDLSDILKNHNGKLENVKLTLNLSSEN 110 (125)
T ss_pred EEEEEEEeCCCCCCCcEEEEEEEEHHHhHhhcCCCccceEEEEEEEccC
Confidence 899999999998899999999999998765432 23588887544
No 92
>PLN02223 phosphoinositide phospholipase C
Probab=99.52 E-value=1.9e-13 Score=122.10 Aligned_cols=138 Identities=18% Similarity=0.302 Sum_probs=104.8
Q ss_pred CCCcceeEeeeecccccCC--CCCceeEEEEECcCCEEEEEEEEeeCCCCC-----CCCCCCCcEEEEEEE--CCCCceE
Q psy17645 7 YSKKSFYLLNLKVLLTDLP--IFKPEQTLEYDFNANSLSVTVIQAEDLPAL-----DMGGTSDPYVKVYLL--PDKKKKF 77 (207)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~--~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~-----~~~g~~dpyv~v~l~--~~~~~~~ 77 (207)
.||+.+|+|||.+++...+ .++|.... .....|.|+|+.|.++... +.....||||++.+. |.+...+
T Consensus 377 ~NG~CGYVLKP~~Lr~~~~~~~FdP~~~~---~~~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~ 453 (537)
T PLN02223 377 ANGGCGYVKKPDFLLNAGPSGVFYPTENP---VVVKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIM 453 (537)
T ss_pred cCCCCCceECChhhccCCcccccCCCCCc---ccceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCccee
Confidence 5899999999999997543 56775321 1356799999999987521 123457899999984 4445567
Q ss_pred EeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEE
Q psy17645 78 ETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWR 157 (207)
Q Consensus 78 ~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~ 157 (207)
+|.+..++.+|.|||+|.|.+ ... .-..|.|.|+|++....++|+|++.+|+..+..|. ++.
T Consensus 454 kT~v~nNg~nPvWne~F~F~i-------------~~P--ELAlLrf~V~D~D~~~~ddfiGQ~~LPv~~Lr~Gy---R~V 515 (537)
T PLN02223 454 KTTVKNNEWKPTWGEEFTFPL-------------TYP--DLALISFEVYDYEVSTADAFCGQTCLPVSELIEGI---RAV 515 (537)
T ss_pred EEEeCCCCcCceecceeEEEE-------------Ecc--CceEEEEEEEecCCCCCCcEEEEEecchHHhcCCc---eeE
Confidence 888888899999999999986 212 33688999999998888999999999999997663 556
Q ss_pred EccccCCC
Q psy17645 158 ELQSVEGE 165 (207)
Q Consensus 158 ~L~~~~~~ 165 (207)
+|.+..+.
T Consensus 516 pL~~~~g~ 523 (537)
T PLN02223 516 PLYDERGK 523 (537)
T ss_pred eccCCCcC
Confidence 77765554
No 93
>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins. 5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.
Probab=99.50 E-value=3e-13 Score=98.46 Aligned_cols=101 Identities=26% Similarity=0.431 Sum_probs=80.0
Q ss_pred CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCce
Q psy17645 57 MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ 136 (207)
Q Consensus 57 ~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~ 136 (207)
..|.+||||.+.+ .+...++|+++..+.+|.|||.|.|.+ + +.....|.|.|||.+.+ ++++
T Consensus 9 ~~G~~dPYv~v~v--~~~~~~kT~v~~~t~nP~Wne~f~f~v-------------~--~~~~~~l~i~v~d~~~~-~d~~ 70 (111)
T cd04052 9 KTGLLSPYAELYL--NGKLVYTTRVKKKTNNPSWNASTEFLV-------------T--DRRKSRVTVVVKDDRDR-HDPV 70 (111)
T ss_pred cCCCCCceEEEEE--CCEEEEEEeeeccCCCCccCCceEEEe-------------c--CcCCCEEEEEEEECCCC-CCCe
Confidence 4688999999999 334568999999999999999999985 2 22456799999999988 8899
Q ss_pred eEEEEEeceeecc-ccccceEEEccccCCCCceEEeecCCCCceeeeceeeeec
Q psy17645 137 IGEVKVALCQIDL-AQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALYLP 189 (207)
Q Consensus 137 lG~~~v~L~~l~~-~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~ 189 (207)
||.+.++|.++.. +.....|+.|.+ ...|+|.+ ++.|.|
T Consensus 71 iG~~~v~L~~l~~~~~~~~~w~~L~~------------~~~G~i~~--~~~~~p 110 (111)
T cd04052 71 LGSVSISLNDLIDATSVGQQWFPLSG------------NGQGRIRI--SALWKP 110 (111)
T ss_pred EEEEEecHHHHHhhhhccceeEECCC------------CCCCEEEE--EEEEec
Confidence 9999999998843 344579999974 12477777 566765
No 94
>PLN03008 Phospholipase D delta
Probab=99.48 E-value=5.1e-13 Score=124.10 Aligned_cols=127 Identities=24% Similarity=0.394 Sum_probs=98.1
Q ss_pred cCCEEEEEEEEeeCCCCCCC------------------------------------------CCCCCcEEEEEEECCCCc
Q psy17645 38 NANSLSVTVIQAEDLPALDM------------------------------------------GGTSDPYVKVYLLPDKKK 75 (207)
Q Consensus 38 ~~~~L~V~I~~a~nL~~~~~------------------------------------------~g~~dpyv~v~l~~~~~~ 75 (207)
-.+.|.++|++|++|+.++. .+.+||||++.+ .+.+
T Consensus 12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~L--g~~r 89 (868)
T PLN03008 12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVV--PQAT 89 (868)
T ss_pred eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEE--CCcc
Confidence 46889999999998874110 246799999999 3455
Q ss_pred eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccce
Q psy17645 76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155 (207)
Q Consensus 76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~ 155 (207)
..+|++++++.||.|||.|.|.+ . . ....|.|.|+|.+.++ +++||++.+||.++..+...+.
T Consensus 90 v~RTrVi~n~~NPvWNE~F~f~v-------------a--h-~~s~L~f~VkD~D~~g-aD~IG~a~IPL~~L~~Ge~vd~ 152 (868)
T PLN03008 90 LARTRVLKNSQEPLWDEKFNISI-------------A--H-PFAYLEFQVKDDDVFG-AQIIGTAKIPVRDIASGERISG 152 (868)
T ss_pred eeeEEeCCCCCCCCcceeEEEEe-------------c--C-CCceEEEEEEcCCccC-CceeEEEEEEHHHcCCCCceEE
Confidence 77999999999999999999995 2 2 2358999999999987 5899999999999999999999
Q ss_pred EEEccccCCCCceEEeecCCCCceeeeceeeeecce
Q psy17645 156 WRELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNV 191 (207)
Q Consensus 156 w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~~~~~ 191 (207)
|++|....++.. ...++|.| .+.|.|--
T Consensus 153 Wl~Ll~~~~kp~------k~~~kl~v--~lqf~pv~ 180 (868)
T PLN03008 153 WFPVLGASGKPP------KAETAIFI--DMKFTPFD 180 (868)
T ss_pred EEEccccCCCCC------CCCcEEEE--EEEEEEcc
Confidence 999987655311 11235555 55566643
No 95
>cd04047 C2B_Copine C2 domain second repeat in Copine. There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom
Probab=99.47 E-value=1.1e-12 Score=94.95 Aligned_cols=94 Identities=26% Similarity=0.460 Sum_probs=74.9
Q ss_pred EEEEEEeeCCCCCCCCCCCCcEEEEEEECCC---CceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 43 SVTVIQAEDLPALDMGGTSDPYVKVYLLPDK---KKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 43 ~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~---~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
.+..++|++|+..+..+.+|||+++.+.+.+ ...++|++++++.+|.|+ .|.|.... +...+ ...
T Consensus 3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~----------l~~~~-~~~ 70 (110)
T cd04047 3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQK----------LCNGD-YDR 70 (110)
T ss_pred EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHH----------hcCCC-cCC
Confidence 3456789999999988999999999986543 236899999999999999 67776310 11011 247
Q ss_pred eEEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645 120 TLVFAIFDFDRFSKHDQIGEVKVALCQID 148 (207)
Q Consensus 120 ~l~i~v~d~~~~~~~~~lG~~~v~L~~l~ 148 (207)
.|.|+|||++..+++++||++.+++.++.
T Consensus 71 ~l~~~V~d~d~~~~d~~iG~~~~~l~~l~ 99 (110)
T cd04047 71 PIKIEVYDYDSSGKHDLIGEFETTLDELL 99 (110)
T ss_pred EEEEEEEEeCCCCCCcEEEEEEEEHHHHh
Confidence 99999999999999999999999999986
No 96
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=99.46 E-value=5.7e-13 Score=99.87 Aligned_cols=111 Identities=28% Similarity=0.370 Sum_probs=83.3
Q ss_pred EEEEEEEEeeCCCCCC--CCC--CCCcEEEEEEECCCCceEEeeeecCCCC--CeEecEEEEeeeccccccee-------
Q psy17645 41 SLSVTVIQAEDLPALD--MGG--TSDPYVKVYLLPDKKKKFETKVHRKTLN--PVFNETFVFKVSFLNRSEVF------- 107 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~--~~g--~~dpyv~v~l~~~~~~~~~T~~~~~t~~--P~w~e~~~f~~~~~~~~~~~------- 107 (207)
.|+|.|.+|++++... ..| .+||||++++.+....+++|.++.++.+ |.||+.|.|++...+-...+
T Consensus 1 eLRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~ 80 (133)
T cd08374 1 ELRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEH 80 (133)
T ss_pred CEEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeecc
Confidence 3899999999966433 355 4999999999766567899999999988 99999999985321111000
Q ss_pred -ccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc
Q psy17645 108 -EQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151 (207)
Q Consensus 108 -~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~ 151 (207)
-.--..+.+....+.+.|||.+.++.|+++|.++++|..+..+.
T Consensus 81 ~~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~ 125 (133)
T cd08374 81 FWSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPA 125 (133)
T ss_pred ccccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhccccc
Confidence 00000134567899999999999999999999999999886553
No 97
>PLN02230 phosphoinositide phospholipase C 4
Probab=99.46 E-value=6.6e-13 Score=120.59 Aligned_cols=138 Identities=20% Similarity=0.234 Sum_probs=104.6
Q ss_pred CCCcceeEeeeecccccCC---CCCceeEEEEECcCCEEEEEEEEeeCCCCCC------CCCCCCcEEEEEEE--CCCCc
Q psy17645 7 YSKKSFYLLNLKVLLTDLP---IFKPEQTLEYDFNANSLSVTVIQAEDLPALD------MGGTSDPYVKVYLL--PDKKK 75 (207)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~---~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~------~~g~~dpyv~v~l~--~~~~~ 75 (207)
.||+.+|+|||+.++...+ .++|.-.. .....|.|+|+.+.+++... .....||||++.+. |.+..
T Consensus 436 ~NG~CGYVLKP~~Lr~~~~~~~~fdP~~~~---~~~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~ 512 (598)
T PLN02230 436 ANGGCGYVKKPDFLMDAGPNGQDFYPKDNS---CPKKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEV 512 (598)
T ss_pred cCCCCCceECCHHhcCCCccccccCCCcCC---CcCcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCc
Confidence 6899999999999998654 46665221 23577999999999864221 12347999999984 44455
Q ss_pred eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccce
Q psy17645 76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155 (207)
Q Consensus 76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~ 155 (207)
+.+|++..++.+|.|+|+|.|.+. + .+ -..|.|.|+|++....++|+|++.+|+..|..|-.
T Consensus 513 ~~kT~v~~n~~nP~Wneef~F~l~-----------v--PE--LAllRf~V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR--- 574 (598)
T PLN02230 513 MEKTKIEYDTWTPIWNKEFIFPLA-----------V--PE--LALLRVEVHEHDINEKDDFGGQTCLPVSEIRQGIH--- 574 (598)
T ss_pred ccceeccCCCCCCccCCeeEEEEE-----------c--Cc--eeEEEEEEEECCCCCCCCEEEEEEcchHHhhCccc---
Confidence 778998889999999999999861 2 23 37899999999988889999999999999876633
Q ss_pred EEEccccCCC
Q psy17645 156 WRELQSVEGE 165 (207)
Q Consensus 156 w~~L~~~~~~ 165 (207)
...|.+..+.
T Consensus 575 ~V~L~~~~G~ 584 (598)
T PLN02230 575 AVPLFNRKGV 584 (598)
T ss_pred eEeccCCCcC
Confidence 4667665544
No 98
>PLN02952 phosphoinositide phospholipase C
Probab=99.46 E-value=1.1e-12 Score=119.34 Aligned_cols=138 Identities=22% Similarity=0.299 Sum_probs=104.8
Q ss_pred CCCcceeEeeeecccccC---CCCCceeEEEEECcCCEEEEEEEEeeCCCCCCC------CCCCCcEEEEEEE--CCCCc
Q psy17645 7 YSKKSFYLLNLKVLLTDL---PIFKPEQTLEYDFNANSLSVTVIQAEDLPALDM------GGTSDPYVKVYLL--PDKKK 75 (207)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~---~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~------~g~~dpyv~v~l~--~~~~~ 75 (207)
.|++.+|+|||+.++... ..++|.-.+ +....|.|.|+.|.+++.... ....||||++.+. |.+..
T Consensus 437 ~NG~cGYVlKP~~lr~~~~~~~~fdp~~~~---~~~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~ 513 (599)
T PLN02952 437 ANGGCGYLKKPDFLMKKGFHDEVFDPKKKL---PVKKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNA 513 (599)
T ss_pred cCCCCCceECCHHHcccCCcccccCCCCCC---CccceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCc
Confidence 488999999999998642 245664322 235679999999988753211 1235899999884 44456
Q ss_pred eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccce
Q psy17645 76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155 (207)
Q Consensus 76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~ 155 (207)
+++|+++.++.+|.|+|+|.|.+ ...+ -..+.|.|||++..+.++|+|++.+|+..+..|. +
T Consensus 514 ~~kTkvi~nN~nPvWnE~F~F~i-------------~~PE--LAllrf~V~D~D~~~~ddfiGq~~lPv~~Lr~Gy---R 575 (599)
T PLN02952 514 KKKTKIIEDNWYPAWNEEFSFPL-------------TVPE--LALLRIEVREYDMSEKDDFGGQTCLPVSELRPGI---R 575 (599)
T ss_pred ceeeeeccCCCCcccCCeeEEEE-------------EcCC--ccEEEEEEEecCCCCCCCeEEEEEcchhHhcCCc---e
Confidence 78999999889999999999985 2222 3678999999998888999999999999997664 4
Q ss_pred EEEccccCCC
Q psy17645 156 WRELQSVEGE 165 (207)
Q Consensus 156 w~~L~~~~~~ 165 (207)
|.+|.+..+.
T Consensus 576 ~VpL~~~~G~ 585 (599)
T PLN02952 576 SVPLHDKKGE 585 (599)
T ss_pred eEeCcCCCCC
Confidence 8899865554
No 99
>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein. The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr
Probab=99.44 E-value=1.3e-12 Score=95.78 Aligned_cols=83 Identities=24% Similarity=0.305 Sum_probs=69.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCc
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNK 119 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
|.|+|.+|++|. +.+||||.+.+.+.+. ...+|++++++.+|.|||.|.|.+ + ...
T Consensus 1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l-------------~----~s~ 58 (118)
T cd08686 1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIEL-------------E----GSQ 58 (118)
T ss_pred CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEe-------------C----CCC
Confidence 579999999995 4589999999876443 579999999999999999999994 3 356
Q ss_pred eEEEEEEec-------CCCCCCceeEEEEEecee
Q psy17645 120 TLVFAIFDF-------DRFSKHDQIGEVKVALCQ 146 (207)
Q Consensus 120 ~l~i~v~d~-------~~~~~~~~lG~~~v~L~~ 146 (207)
.+.+.|||+ +..+.|+++|.+.+.|+-
T Consensus 59 ~L~~~v~d~~~~~~~~d~~~~d~~~G~g~i~Ld~ 92 (118)
T cd08686 59 TLRILCYEKCYSKVKLDGEGTDAIMGKGQIQLDP 92 (118)
T ss_pred EEEEEEEEcccccccccccCcccEEEEEEEEECH
Confidence 999999997 456788999998888753
No 100
>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking. C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....
Probab=99.44 E-value=2e-12 Score=88.18 Aligned_cols=85 Identities=42% Similarity=0.691 Sum_probs=72.7
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|+|+|.+|++|...+..+..+||+++.+.......++|+++..+.+|.|+|.|.|.+ ... ....|
T Consensus 1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~-------------~~~--~~~~l 65 (85)
T PF00168_consen 1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPL-------------DDP--DLDSL 65 (85)
T ss_dssp EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEE-------------SHG--CGTEE
T ss_pred CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeee-------------ecc--cccce
Confidence 689999999999988888999999999975444679999999999999999999984 222 23459
Q ss_pred EEEEEecCCCCCCceeEEEE
Q psy17645 122 VFAIFDFDRFSKHDQIGEVK 141 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~ 141 (207)
.|+||+.+..+++++||++.
T Consensus 66 ~~~V~~~~~~~~~~~iG~~~ 85 (85)
T PF00168_consen 66 SFEVWDKDSFGKDELIGEVK 85 (85)
T ss_dssp EEEEEEETSSSSEEEEEEEE
T ss_pred EEEEEECCCCCCCCEEEEEC
Confidence 99999999988899999873
No 101
>PLN02222 phosphoinositide phospholipase C 2
Probab=99.44 E-value=1.6e-12 Score=117.85 Aligned_cols=138 Identities=23% Similarity=0.286 Sum_probs=104.6
Q ss_pred CCCcceeEeeeecccccCC---CCCceeEEEEECcCCEEEEEEEEeeCCC--CCC----CCCCCCcEEEEEEE--CCCCc
Q psy17645 7 YSKKSFYLLNLKVLLTDLP---IFKPEQTLEYDFNANSLSVTVIQAEDLP--ALD----MGGTSDPYVKVYLL--PDKKK 75 (207)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~---~~~~~~~l~y~~~~~~L~V~I~~a~nL~--~~~----~~g~~dpyv~v~l~--~~~~~ 75 (207)
.|++.+|+|||+.++.... .++|.... +....|.|+|+.+.++. ... .....||||++.+. |.+..
T Consensus 419 ~NG~cGYVLKP~~lr~~~~~~~~fdp~~~~---~~~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~ 495 (581)
T PLN02222 419 ANGGCGYIKKPDLLLKSGSDSDIFDPKATL---PVKTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTV 495 (581)
T ss_pred cCCCCceEECCHHhccCCccccccCCCCCC---CccceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcc
Confidence 5899999999999998765 56665432 23467999999998753 211 12357899999984 44556
Q ss_pred eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccce
Q psy17645 76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155 (207)
Q Consensus 76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~ 155 (207)
+++|+++.++.+|.|+|.|.|.+. + .+ -..|.|.|+|++....++|+|++.+|+..+..|-.
T Consensus 496 ~~rTk~v~nn~nP~W~e~f~F~i~-----------~--Pe--LAllRf~V~d~D~~~~ddfigq~~lPv~~Lr~GyR--- 557 (581)
T PLN02222 496 MKKTKTLEDNWIPAWDEVFEFPLT-----------V--PE--LALLRLEVHEYDMSEKDDFGGQTCLPVWELSQGIR--- 557 (581)
T ss_pred eeeeEecCCCCCcccCCeeEEEEE-----------c--Cc--eeEEEEEEEECCCCCCCcEEEEEEcchhhhhCccc---
Confidence 789999998899999999999851 2 23 36889999999887889999999999999876633
Q ss_pred EEEccccCCC
Q psy17645 156 WRELQSVEGE 165 (207)
Q Consensus 156 w~~L~~~~~~ 165 (207)
...|.+..++
T Consensus 558 ~V~L~~~~g~ 567 (581)
T PLN02222 558 AFPLHSRKGE 567 (581)
T ss_pred eEEccCCCcC
Confidence 4566655444
No 102
>PLN02228 Phosphoinositide phospholipase C
Probab=99.41 E-value=4.8e-12 Score=114.51 Aligned_cols=138 Identities=20% Similarity=0.337 Sum_probs=104.4
Q ss_pred CCCcceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCC---CC---CCCCCCcEEEEEEE--CCCCceEE
Q psy17645 7 YSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPA---LD---MGGTSDPYVKVYLL--PDKKKKFE 78 (207)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~---~~---~~g~~dpyv~v~l~--~~~~~~~~ 78 (207)
.|++.+|+|||+.++.....++|.... +....|.|+|+.|.+|+. .. .....||||++.+. |.+...++
T Consensus 401 ~NG~cGYVLKP~~Lr~~~~~f~p~~~~---p~~~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~r 477 (567)
T PLN02228 401 ANGGCGYVKKPRILLDEHTLFDPCKRL---PIKTTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYR 477 (567)
T ss_pred hCCCCCceeCchhhcccccccCCccCC---CcCceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcce
Confidence 478999999999999876667765332 224579999999998732 11 12347899999984 44556789
Q ss_pred eeeecCCCCCeE-ecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEE
Q psy17645 79 TKVHRKTLNPVF-NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWR 157 (207)
Q Consensus 79 T~~~~~t~~P~w-~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~ 157 (207)
|+++.++.+|.| +|.|.|.+ ...+ -..|.|.|+|++....++|+|++.+|+..|..|- +..
T Consensus 478 Tk~~~n~~nP~W~~e~f~F~~-------------~~pE--LA~lRf~V~D~d~~~~d~figq~~lPv~~Lr~GY---R~V 539 (567)
T PLN02228 478 TETAVDQWFPIWGNDEFLFQL-------------RVPE--LALLWFKVQDYDNDTQNDFAGQTCLPLPELKSGV---RAV 539 (567)
T ss_pred eeccCCCCCceECCCeEEEEE-------------EcCc--eeEEEEEEEeCCCCCCCCEEEEEEcchhHhhCCe---eEE
Confidence 999988899999 99999985 2223 3688999999998788899999999999986653 345
Q ss_pred EccccCCC
Q psy17645 158 ELQSVEGE 165 (207)
Q Consensus 158 ~L~~~~~~ 165 (207)
.|.+..++
T Consensus 540 pL~~~~G~ 547 (567)
T PLN02228 540 RLHDRAGK 547 (567)
T ss_pred EccCCCCC
Confidence 67665554
No 103
>KOG0169|consensus
Probab=99.36 E-value=2.8e-12 Score=117.11 Aligned_cols=138 Identities=26% Similarity=0.400 Sum_probs=104.5
Q ss_pred CCcceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCC----CCCCCcEEEEEE--ECCCCceEEee-
Q psy17645 8 SKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDM----GGTSDPYVKVYL--LPDKKKKFETK- 80 (207)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~----~g~~dpyv~v~l--~~~~~~~~~T~- 80 (207)
|+-.+|+|||.+++....+++|.-.+. +..-.|.|.|+.+.++..... ...++|||.+.+ .|.+....+|+
T Consensus 586 NGgCGYVlKP~~L~~~~~~F~P~~~~~--~~~~tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~ 663 (746)
T KOG0169|consen 586 NGGCGYVLKPDFLLDSGSTFDPKSNLP--PVKKTLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKV 663 (746)
T ss_pred CCCccceECcHHHcCCCCccCCCCCCC--CCCceeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhcee
Confidence 566899999999999888888842211 122279999999996654432 245789999887 35556688999
Q ss_pred eecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcc
Q psy17645 81 VHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQ 160 (207)
Q Consensus 81 ~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~ 160 (207)
+..++.+|.|+|+|.|.+ ...+ -..|.|.|+|++..+.|+|+|+..+|+..+..|-.+ .+|.
T Consensus 664 v~~NgfnP~W~e~f~F~l-------------~vPE--LAliRF~V~d~d~~~~ddF~GQ~tlP~~~L~~GyRh---VpL~ 725 (746)
T KOG0169|consen 664 VKNNGFNPIWDEEFEFQL-------------SVPE--LALIRFEVHDYDYIGKDDFIGQTTLPVSELRQGYRH---VPLL 725 (746)
T ss_pred eccCCcCcccCCeEEEEE-------------eccc--eeEEEEEEEecCCCCcccccceeeccHHHhhCceee---eeec
Confidence 566899999999999996 2223 378999999999999999999999999998766433 4555
Q ss_pred ccCCC
Q psy17645 161 SVEGE 165 (207)
Q Consensus 161 ~~~~~ 165 (207)
+..++
T Consensus 726 ~~~G~ 730 (746)
T KOG0169|consen 726 SREGE 730 (746)
T ss_pred CCCCc
Confidence 54444
No 104
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.33 E-value=7.8e-12 Score=125.47 Aligned_cols=109 Identities=20% Similarity=0.297 Sum_probs=90.9
Q ss_pred CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645 37 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA 116 (207)
Q Consensus 37 ~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~ 116 (207)
---|.|.|+|.+|+||. +..+.+||||.+.+. ++.+.+|++++++.+|.|||.|.|.+. .|+
T Consensus 1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g--~~~~~kTkvvk~~~nP~Wne~f~~~~~-----------~p~--- 2038 (2102)
T PLN03200 1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLG--NGPPRQTKVVSHSSSPEWKEGFTWAFD-----------SPP--- 2038 (2102)
T ss_pred hCCcceEEEEeeccccc--cccCCCCCeEEEEEC--CCCcccccccCCCCCCCcccceeeeec-----------CCC---
Confidence 35789999999999998 447899999999993 344779999999999999999997740 221
Q ss_pred CCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCC
Q psy17645 117 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 164 (207)
Q Consensus 117 ~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~ 164 (207)
....+.++|||++.+++ +.+|++.+++.++-.++..+.||+|.+...
T Consensus 2039 ~~~~l~iev~d~d~f~k-d~~G~~~i~l~~vv~~~~~~~~~~L~~~~~ 2085 (2102)
T PLN03200 2039 KGQKLHISCKSKNTFGK-SSLGKVTIQIDRVVMEGTYSGEYSLNPESN 2085 (2102)
T ss_pred CCCceEEEEEecCccCC-CCCceEEEEHHHHhcCceeeeeeecCcccc
Confidence 23569999999999855 599999999999988899999999996433
No 105
>smart00239 C2 Protein kinase C conserved region 2 (CalB). Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.
Probab=99.30 E-value=6.7e-11 Score=82.40 Aligned_cols=97 Identities=46% Similarity=0.680 Sum_probs=79.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
+.|.|.+|++|......+..+||+++.+.+.+....+|+....+.+|.|++.|.|.+ ... ....|
T Consensus 2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~-------------~~~--~~~~l 66 (101)
T smart00239 2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEV-------------PPP--ELAEL 66 (101)
T ss_pred eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEe-------------cCc--ccCEE
Confidence 679999999999887657899999999954323578999999888999999999985 211 26799
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeecccccc
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQIDLAQTI 153 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~ 153 (207)
.|++|+......+.++|.+.+++.++..+...
T Consensus 67 ~i~v~~~~~~~~~~~~G~~~~~l~~~~~~~~~ 98 (101)
T smart00239 67 EIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRH 98 (101)
T ss_pred EEEEEecCCccCCceeEEEEEEHHHcccCccc
Confidence 99999998877789999999999888655433
No 106
>cd00030 C2 C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.
Probab=99.28 E-value=7.2e-11 Score=81.74 Aligned_cols=101 Identities=51% Similarity=0.747 Sum_probs=83.8
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
|.|.|.+|++|.........+||+.+.+. +....+|++...+.+|.|++.|.|.+ +.. ....+
T Consensus 1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~--~~~~~~T~~~~~~~~P~w~~~~~~~~-------------~~~--~~~~l 63 (102)
T cd00030 1 LRVTVIEARNLPAKDLNGKSDPYVKVSLG--GKQKFKTKVVKNTLNPVWNETFEFPV-------------LDP--ESDTL 63 (102)
T ss_pred CEEEEEeeeCCCCcCCCCCCCcEEEEEec--cCceEecceeCCCCCCcccceEEEEc-------------cCC--CCCEE
Confidence 46899999999887767789999999984 24678999999999999999999985 211 35789
Q ss_pred EEEEEecCCCCCCceeEEEEEeceeec-cccccceEEEc
Q psy17645 122 VFAIFDFDRFSKHDQIGEVKVALCQID-LAQTIEEWREL 159 (207)
Q Consensus 122 ~i~v~d~~~~~~~~~lG~~~v~L~~l~-~~~~~~~w~~L 159 (207)
.+++|+.+....+.++|.+.+++.++. .......|++|
T Consensus 64 ~i~v~~~~~~~~~~~ig~~~~~l~~l~~~~~~~~~~~~l 102 (102)
T cd00030 64 TVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102 (102)
T ss_pred EEEEEecCCCCCCceeEEEEEeHHHhhhcCCcCcceecC
Confidence 999999998877899999999999987 55666788765
No 107
>KOG1264|consensus
Probab=99.25 E-value=3e-11 Score=110.74 Aligned_cols=126 Identities=25% Similarity=0.391 Sum_probs=97.6
Q ss_pred CCCcceeEeeeecccccCCCCCceeE-EEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEE--CCCCc-eEEeeee
Q psy17645 7 YSKKSFYLLNLKVLLTDLPIFKPEQT-LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL--PDKKK-KFETKVH 82 (207)
Q Consensus 7 ~~~~~~~~l~~~~~~~~~~~~~~~~~-l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~--~~~~~-~~~T~~~ 82 (207)
.|+|.+|+|||+.|+++. ++|.=. .+.......|.|.++.||.|+..+ -+.+.|||.+.+- +-+.. .++|.+.
T Consensus 1033 ~ngrcGYvLqPs~Mrte~--fdP~n~e~~~~l~p~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~ 1109 (1267)
T KOG1264|consen 1033 LNGRCGYVLQPSSMRTEK--FDPMNPESQRGLLPMTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVN 1109 (1267)
T ss_pred cCCceeeEecchhccccc--CCCCChHHhccccceEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEec
Confidence 589999999999999887 555321 222334567999999999999654 5667899999984 22233 4455556
Q ss_pred cCCCCCeEe-cEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc
Q psy17645 83 RKTLNPVFN-ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150 (207)
Q Consensus 83 ~~t~~P~w~-e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~ 150 (207)
.+.++|.|+ |.|.|.+ . .+.-..|.|.|++.|.++...|||++..|+..+..|
T Consensus 1110 dNGlnPiWn~e~ftFeI------------~---nPe~A~lRF~V~eeDmfs~~~FiaqA~yPv~~ik~G 1163 (1267)
T KOG1264|consen 1110 DNGLNPIWNPEKFTFEI------------Y---NPEFAFLRFVVYEEDMFSDPNFLAQATYPVKAIKSG 1163 (1267)
T ss_pred cCCCCCCCCCcceEEEe------------e---CCceEEEEEEEecccccCCcceeeeeecchhhhhcc
Confidence 789999999 9999996 2 224478999999999999889999999999988665
No 108
>KOG2059|consensus
Probab=99.23 E-value=2.6e-11 Score=109.71 Aligned_cols=115 Identities=30% Similarity=0.489 Sum_probs=98.5
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
...|.|+|.+|+||++.+..|..|+|+.+.+ +.....+|.++..++.|.|+|.|.|+ +|. .-
T Consensus 4 ~~sl~vki~E~knL~~~~~~g~~D~yC~v~l--D~E~v~RT~tv~ksL~PF~gEe~~~~-------------iP~---~F 65 (800)
T KOG2059|consen 4 EQSLKVKIGEAKNLPSYGPSGMRDCYCTVNL--DQEEVCRTATVEKSLCPFFGEEFYFE-------------IPR---TF 65 (800)
T ss_pred ccceeEEEeecccCCCCCCCCCcCcceEEee--cchhhhhhhhhhhhcCCccccceEEe-------------cCc---ce
Confidence 4568999999999999999999999999999 45668899999999999999999999 453 33
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEcccc--CCCCceEEee
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSV--EGEGGQVYYL 172 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~--~~~~~~~~~l 172 (207)
..+.|.|||.| +++|+.||.+.+.-.++....+.+.|+.|.+. ..++.+++++
T Consensus 66 ~~l~fYv~D~d-~~~D~~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l 120 (800)
T KOG2059|consen 66 RYLSFYVWDRD-LKRDDIIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHL 120 (800)
T ss_pred eeEEEEEeccc-cccccccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEE
Confidence 68999999999 89999999999998888877888999999874 3444555544
No 109
>KOG2059|consensus
Probab=99.18 E-value=1.1e-10 Score=105.89 Aligned_cols=180 Identities=22% Similarity=0.270 Sum_probs=127.3
Q ss_pred CCcceeEeeeecccccCCCCCceeEEEEEC--cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEE-CCCCceEEeeeecC
Q psy17645 8 SKKSFYLLNLKVLLTDLPIFKPEQTLEYDF--NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-PDKKKKFETKVHRK 84 (207)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~--~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~-~~~~~~~~T~~~~~ 84 (207)
++-+|+.|+|--. +..=.|.+++.+.... +...++|..++++.+.+.. ++.+|||+++.+. +......+|++.+.
T Consensus 98 ~~d~W~~L~~VD~-dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kk 175 (800)
T KOG2059|consen 98 GKDTWFSLQPVDP-DSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKK 175 (800)
T ss_pred CCccceeccccCC-ChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeee
Confidence 6667888876432 2233477777766654 7778999999999888775 5669999999873 33334579999999
Q ss_pred CCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEe-cCCCCCCceeEEEEEeceeeccccccceEEEccccC
Q psy17645 85 TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFD-FDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVE 163 (207)
Q Consensus 85 t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d-~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~ 163 (207)
+.+|.|+|.|.|.+...++-.....+.+.++.....+.+++|+ .+....++|+|++.+++...........||.|++.+
T Consensus 176 t~~p~~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~ 255 (800)
T KOG2059|consen 176 TTNPQFDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRP 255 (800)
T ss_pred ccCcchhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCC
Confidence 9999999999998732221111111123233345788999998 455556899999999999887677888999999763
Q ss_pred CCCceEEeecCCCCceeeeceeeeecceee
Q psy17645 164 GEGGQVYYLDGPKGNLATGKKALYLPNVGV 193 (207)
Q Consensus 164 ~~~~~~~~l~~~~g~i~~~~~~~~~~~~~~ 193 (207)
. +.+..-.+..|.+++ ++.|.-++..
T Consensus 256 ~--g~~~~~~~~lGslrl--~v~y~~D~Vl 281 (800)
T KOG2059|consen 256 N--GEKSSDGGDLGSLRL--NVTYTEDHVL 281 (800)
T ss_pred C--cccCCCCCCccceee--eEEeeeceec
Confidence 3 333344556689998 5557766654
No 110
>KOG1011|consensus
Probab=99.16 E-value=7.5e-11 Score=106.19 Aligned_cols=120 Identities=25% Similarity=0.415 Sum_probs=97.1
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
...++++++.|.+|...+..|.+|||+.+.. ++.+.+|+++-..++|.|+|.|.|.+ .. ..
T Consensus 294 sakitltvlcaqgl~akdktg~sdpyvt~qv---~ktkrrtrti~~~lnpvw~ekfhfec------------hn----st 354 (1283)
T KOG1011|consen 294 SAKITLTVLCAQGLIAKDKTGKSDPYVTAQV---GKTKRRTRTIHQELNPVWNEKFHFEC------------HN----ST 354 (1283)
T ss_pred ceeeEEeeeecccceecccCCCCCCcEEEee---cccchhhHhhhhccchhhhhheeeee------------cC----CC
Confidence 3468899999999999999999999999998 56788999999999999999999996 22 45
Q ss_pred ceEEEEEEecCCC-----------CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceee
Q psy17645 119 KTLVFAIFDFDRF-----------SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKAL 186 (207)
Q Consensus 119 ~~l~i~v~d~~~~-----------~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~ 186 (207)
..|.+.|||.+.- ..|+|+|+..+.+..+. ...+-||+|..+..+ ++..|.|++.|++-
T Consensus 355 drikvrvwded~dlksklrqkl~resddflgqtvievrtls--gemdvwynlekrtdk-------savsgairlhisve 424 (1283)
T KOG1011|consen 355 DRIKVRVWDEDNDLKSKLRQKLTRESDDFLGQTVIEVRTLS--GEMDVWYNLEKRTDK-------SAVSGAIRLHISVE 424 (1283)
T ss_pred ceeEEEEecCcccHHHHHHHHhhhcccccccceeEEEEecc--cchhhhcchhhccch-------hhccceEEEEEEEE
Confidence 6899999998742 35789999999888763 467889999865444 34557777765543
No 111
>KOG0905|consensus
Probab=99.13 E-value=7.8e-11 Score=111.41 Aligned_cols=120 Identities=35% Similarity=0.601 Sum_probs=105.7
Q ss_pred CceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeecccccc
Q psy17645 28 KPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFLNRSE 105 (207)
Q Consensus 28 ~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~ 105 (207)
.+.++|.| .++.|.|.|--+++|+-...+..+||||++++.|+..+ +.+|+++++|.+|.|||...+.
T Consensus 1514 qV~LsIsY--~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~-------- 1583 (1639)
T KOG0905|consen 1514 QVKLSISY--NNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYD-------- 1583 (1639)
T ss_pred eEEEEEEE--cCceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeec--------
Confidence 44555555 59999999999999987777888999999999887653 7899999999999999999998
Q ss_pred eeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~ 161 (207)
|+|.+.+....|.++||..+....+.++|.+.++|..+...+....||.|..
T Consensus 1584 ----g~p~~~l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1584 ----GFPKEILQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred ----CCchhhhhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence 4787777889999999999999999999999999999988888889999964
No 112
>PLN02270 phospholipase D alpha
Probab=99.12 E-value=1.1e-09 Score=102.09 Aligned_cols=125 Identities=19% Similarity=0.295 Sum_probs=99.8
Q ss_pred CCEEEEEEEEeeCCCCCC------------------CCCCCCcEEEEEEECCCCceEEeeeecC-CCCCeEecEEEEeee
Q psy17645 39 ANSLSVTVIQAEDLPALD------------------MGGTSDPYVKVYLLPDKKKKFETKVHRK-TLNPVFNETFVFKVS 99 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~------------------~~g~~dpyv~v~l~~~~~~~~~T~~~~~-t~~P~w~e~~~f~~~ 99 (207)
.+.|.++|++|++|+..+ ..+.++||+.+.+ .+.+..+|+++.+ ..+|.|+|.|.+.+
T Consensus 7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~a~v~rtr~~~~~~~~p~w~e~f~i~~- 83 (808)
T PLN02270 7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDL--EKARVGRTRKIENEPKNPRWYESFHIYC- 83 (808)
T ss_pred ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEe--CCcEEEEEeecCCCCCCCccccceEEee-
Confidence 578999999999997521 1256799999999 5678899999987 46999999999886
Q ss_pred cccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCce
Q psy17645 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNL 179 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i 179 (207)
-. .-..+.|.|.|.+.++. .+||.+.+|..++..+..++.|+++....++ ..++..
T Consensus 84 -----------ah----~~~~v~f~vkd~~~~g~-~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~--------p~~~~~ 139 (808)
T PLN02270 84 -----------AH----MASNIIFTVKDDNPIGA-TLIGRAYIPVEEILDGEEVDRWVEILDNDKN--------PIHGGS 139 (808)
T ss_pred -----------cc----CcceEEEEEecCCccCc-eEEEEEEEEHHHhcCCCccccEEeccCCCCC--------cCCCCC
Confidence 22 34789999999998765 6999999999999999999999999886655 233444
Q ss_pred eeeceeeeecc
Q psy17645 180 ATGKKALYLPN 190 (207)
Q Consensus 180 ~~~~~~~~~~~ 190 (207)
.+++++.|.|-
T Consensus 140 ~~~~~~~f~~~ 150 (808)
T PLN02270 140 KIHVKLQYFEV 150 (808)
T ss_pred EEEEEEEEEEc
Confidence 55556667773
No 113
>KOG1328|consensus
Probab=98.95 E-value=4.6e-10 Score=102.13 Aligned_cols=109 Identities=37% Similarity=0.508 Sum_probs=95.2
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCC----CceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK----KKKFETKVHRKTLNPVFNETFVFKVSFLN 102 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~----~~~~~T~~~~~t~~P~w~e~~~f~~~~~~ 102 (207)
|-..+...|......|.|.|+-|+++.+.+.+|.+||||.+.+.|.- ...++|+++..|++|+|+|.|+|.
T Consensus 934 g~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFs----- 1008 (1103)
T KOG1328|consen 934 GVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFS----- 1008 (1103)
T ss_pred CceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeee-----
Confidence 44688899999999999999999999999999999999999997632 247899999999999999999999
Q ss_pred ccceeccCcccCcC--CCceEEEEEEecCCCCCCceeEEEEEeceeec
Q psy17645 103 RSEVFEQGVPYADA--MNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148 (207)
Q Consensus 103 ~~~~~~~~~~~~~~--~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~ 148 (207)
+|.+.- ....+.|+|+|++-++.++|-|++.+.|.++.
T Consensus 1009 --------Vp~e~c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vp 1048 (1103)
T KOG1328|consen 1009 --------VPPEPCSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVP 1048 (1103)
T ss_pred --------cCccccccccceEEEEeeccceecccccchHHHHhhCCCC
Confidence 554332 25788999999999999999999999998873
No 114
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.88 E-value=1.2e-08 Score=97.29 Aligned_cols=107 Identities=34% Similarity=0.585 Sum_probs=90.7
Q ss_pred cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCC
Q psy17645 38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAM 117 (207)
Q Consensus 38 ~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~ 117 (207)
..+.|.|.+..|.||+..+..|.+||||.+.+ .+...++|++++++++|.|||.+..++ . ...
T Consensus 1038 nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~l--n~k~vyktkv~KktlNPvwNEe~~i~v-------------~--~r~ 1100 (1227)
T COG5038 1038 NSGYLTIMLRSGENLPSSDENGYSDPFVKLFL--NEKSVYKTKVVKKTLNPVWNEEFTIEV-------------L--NRV 1100 (1227)
T ss_pred ccCcEEEEEeccCCCcccccCCCCCceEEEEe--cceecccccchhccCCCCccccceEee-------------e--ccc
Confidence 58899999999999999999999999999998 345589999999999999999999885 2 124
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccc
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~ 161 (207)
...+.+.++|++...+++.||.+.++|..+..+.....-..|..
T Consensus 1101 ~D~~~i~v~Dwd~~~knd~lg~~~idL~~l~~~~~~n~~i~ldg 1144 (1227)
T COG5038 1101 KDVLTINVNDWDSGEKNDLLGTAEIDLSKLEPGGTTNSNIPLDG 1144 (1227)
T ss_pred cceEEEEEeecccCCCccccccccccHhhcCcCCccceeeeccC
Confidence 46889999999999999999999999999877765555444543
No 115
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=98.81 E-value=3.3e-08 Score=94.28 Aligned_cols=96 Identities=29% Similarity=0.540 Sum_probs=81.7
Q ss_pred cCCEEEEEEEEeeCCCCCC--CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645 38 NANSLSVTVIQAEDLPALD--MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD 115 (207)
Q Consensus 38 ~~~~L~V~I~~a~nL~~~~--~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~ 115 (207)
.-|.+.++|..|++|...+ ..+..|||+.+.+ .+....+|++.+.+.+|.|||+++..+ -.
T Consensus 434 aIGVv~vkI~sa~~lk~~d~~i~~~vDpyit~~~--~~r~~gkT~v~~nt~nPvwNEt~Yi~l------------ns--- 496 (1227)
T COG5038 434 AIGVVEVKIKSAEGLKKSDSTINGTVDPYITVTF--SDRVIGKTRVKKNTLNPVWNETFYILL------------NS--- 496 (1227)
T ss_pred eeEEEEEEEeeccCcccccccccCCCCceEEEEe--ccccCCccceeeccCCccccceEEEEe------------cc---
Confidence 5678999999999999887 5789999999997 344566999999999999999999885 11
Q ss_pred CCCceEEEEEEecCCCCCCceeEEEEEeceeecccc
Q psy17645 116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151 (207)
Q Consensus 116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~ 151 (207)
....|.+++||.+....|..+|.++++|..+....
T Consensus 497 -~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L~~~~ 531 (1227)
T COG5038 497 -FTDPLNLSLYDFNSFKSDKVVGSTQLDLALLHQNP 531 (1227)
T ss_pred -cCCceeEEEEeccccCCcceeeeEEechHHhhhcc
Confidence 45689999999888899999999999998875443
No 116
>KOG1013|consensus
Probab=98.81 E-value=9.1e-09 Score=86.41 Aligned_cols=120 Identities=30% Similarity=0.418 Sum_probs=100.6
Q ss_pred CCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeecc
Q psy17645 24 LPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFL 101 (207)
Q Consensus 24 ~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~ 101 (207)
.+.+...+++.|......+.|.+++|..|...+..+.+|||++..+.|+... +.+|.+.+.+.+|.|++.|.|.
T Consensus 217 E~rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~---- 292 (362)
T KOG1013|consen 217 EERGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYD---- 292 (362)
T ss_pred hhccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCcccccccccc----
Confidence 4557789999999999999999999999999999999999999999876654 6788889999999999999998
Q ss_pred cccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEE
Q psy17645 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 158 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~ 158 (207)
.+..++....+.+.+||++.....+++|.....+.. .+.-+++|..
T Consensus 293 ---------i~pgdLa~~kv~lsvgd~~~G~s~d~~GG~~~g~~r--r~~v~~h~gr 338 (362)
T KOG1013|consen 293 ---------IGPGDLAYKKVALSVGDYDIGKSNDSIGGSMLGGYR--RGEVHKHWGR 338 (362)
T ss_pred ---------CCccchhcceEEEeecccCCCcCccCCCcccccccc--cchhhcCccc
Confidence 455677889999999999988788999986665443 3444555544
No 117
>KOG1265|consensus
Probab=98.73 E-value=1.7e-08 Score=93.77 Aligned_cols=126 Identities=28% Similarity=0.415 Sum_probs=97.6
Q ss_pred cCCCCCcceeEeeeecccccCCCCCceeEEEEEC-cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEE--CCCC--ceEE
Q psy17645 4 ILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDF-NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL--PDKK--KKFE 78 (207)
Q Consensus 4 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~y~~-~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~--~~~~--~~~~ 78 (207)
+.-||++++|+|||++||...-.++|...-..+- -++.+.|+|+.+.-|.++. ...||.|.+. |... +.++
T Consensus 666 ~FEyNG~sGYllKPdfmRrpDr~fdPFse~~VdgvIA~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~r 741 (1189)
T KOG1265|consen 666 MFEYNGGSGYLLKPDFMRRPDRQFDPFSESPVDGVIAATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFR 741 (1189)
T ss_pred heeecCCccceeChHHhhCCCcCcCCcccCcccceEEeeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhh
Confidence 3569999999999999999999999965533332 5778999999999887764 5599999883 3322 4678
Q ss_pred eeeec-CCCCCeEe-cEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc
Q psy17645 79 TKVHR-KTLNPVFN-ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151 (207)
Q Consensus 79 T~~~~-~t~~P~w~-e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~ 151 (207)
|++.. ++++|.|+ |.|.|.- +-+.++ ..|.|.||+.+. .++|+-.+|++.+..|.
T Consensus 742 trt~~~n~~npvy~eepfvF~K------------VvLpeL--A~lRiavyeEgg----K~ig~RIlpvd~l~~GY 798 (1189)
T KOG1265|consen 742 TRTVQGNSFNPVYEEEPFVFRK------------VVLPEL--ASLRIAVYEEGG----KFIGQRILPVDGLNAGY 798 (1189)
T ss_pred hccccCCCCCcccccCCcccce------------ecccch--hheeeeeeccCC----ceeeeeccchhcccCcc
Confidence 88876 78999999 5778853 222333 689999998875 79999999999886653
No 118
>KOG1011|consensus
Probab=98.69 E-value=1.3e-07 Score=85.73 Aligned_cols=130 Identities=25% Similarity=0.328 Sum_probs=104.5
Q ss_pred cCCCCCc--eeEEEEEC--cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEE-C---CCCceEEeeeecCCCCCeEecEE
Q psy17645 23 DLPIFKP--EQTLEYDF--NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL-P---DKKKKFETKVHRKTLNPVFNETF 94 (207)
Q Consensus 23 ~~~~~~~--~~~l~y~~--~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~-~---~~~~~~~T~~~~~t~~P~w~e~~ 94 (207)
..|+|+. ++-+.-+| ..+.++|.|+.|.+|.-.. .|.-.||+.+.+. | +.++++.|+...++..|.|||+|
T Consensus 1104 edpvgevsvqvdlfthpgtgehkvtvkvvaandlkwqt-sgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF 1182 (1283)
T KOG1011|consen 1104 EDPVGEVSVQVDLFTHPGTGEHKVTVKVVAANDLKWQT-SGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETF 1182 (1283)
T ss_pred CCCCceEEEEEEeecCCCCCcceEEEEEEecccccchh-ccccccceEEEEecCcccchhhhccccccCCCcCcccCcee
Confidence 5666765 55566666 4567899999999998764 6788999999874 3 34568999999999999999999
Q ss_pred EEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 95 VFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 95 ~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
.|-+ .....+....+.+.|-|+...+.|..+|.+.+.|.++.......+|++|...-..
T Consensus 1183 ~f~L------------g~e~~Pe~YEL~~~VKDYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgrrihm 1241 (1283)
T KOG1011|consen 1183 HFFL------------GNEGGPEHYELQFCVKDYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGRRIHM 1241 (1283)
T ss_pred EEEe------------ccCCCCceEEEEEeehhheeecccceeeeeeeehhhHhhcCceeEeeeccccccc
Confidence 9985 2223445678889999999888889999999999999888888899999775544
No 119
>KOG1328|consensus
Probab=98.68 E-value=3.9e-09 Score=96.26 Aligned_cols=125 Identities=27% Similarity=0.483 Sum_probs=96.9
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc----------------------------eEEeeeecCCCCCeE
Q psy17645 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK----------------------------KFETKVHRKTLNPVF 90 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~----------------------------~~~T~~~~~t~~P~w 90 (207)
..-+.|.+.+|.+|..++.+|++|||+..-+.|...+ .+-|++++.|++|.|
T Consensus 113 ~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnPkW 192 (1103)
T KOG1328|consen 113 SVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNPKW 192 (1103)
T ss_pred cHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCcch
Confidence 4446677788999999999999999998876442110 245788889999999
Q ss_pred ecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCC---------------------------------CC---C
Q psy17645 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRF---------------------------------SK---H 134 (207)
Q Consensus 91 ~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~---------------------------------~~---~ 134 (207)
+|.|.|.+ +++....+.+.+||++-- +. |
T Consensus 193 ~EkF~F~I---------------eDv~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tD 257 (1103)
T KOG1328|consen 193 SEKFQFTI---------------EDVQTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTD 257 (1103)
T ss_pred hhheeeeh---------------hccccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCcccc
Confidence 99999996 677888999999998621 12 7
Q ss_pred ceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeeceee
Q psy17645 135 DQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKAL 186 (207)
Q Consensus 135 ~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~ 186 (207)
+|+|...+||.++.. .+.++||.|++++.. +...|.+++.+.++
T Consensus 258 DFLGciNipl~EiP~-~Gld~WFkLepRS~~-------S~VqG~~~LklwLs 301 (1103)
T KOG1328|consen 258 DFLGCINIPLAEIPP-DGLDQWFKLEPRSDK-------SKVQGQVKLKLWLS 301 (1103)
T ss_pred ccccccccchhcCCc-chHHHHhccCccccc-------ccccceEEEEEEEe
Confidence 899999999999954 578999999987665 34557777754544
No 120
>KOG1031|consensus
Probab=98.53 E-value=4.1e-07 Score=81.70 Aligned_cols=123 Identities=28% Similarity=0.489 Sum_probs=97.6
Q ss_pred CEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEe-cEEEEeeecccccceeccCcccCcCC
Q psy17645 40 NSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN-ETFVFKVSFLNRSEVFEQGVPYADAM 117 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~-e~~~f~~~~~~~~~~~~~~~~~~~~~ 117 (207)
+.|-|.|..||+|+-++.. ...|.||.+.+ ....++|.+-.++++|.|| +.|.|. +.-.++.
T Consensus 3 gkl~vki~a~r~lpvmdkasd~tdafveik~---~n~t~ktdvf~kslnp~wnsdwfkfe-------------vddadlq 66 (1169)
T KOG1031|consen 3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKF---ANTTFKTDVFLKSLNPQWNSDWFKFE-------------VDDADLQ 66 (1169)
T ss_pred CcceeEEEeccCCcccccccccchheeEEEe---cccceehhhhhhhcCCcccccceEEe-------------cChhhhc
Confidence 5788999999999988754 56899999998 5678999999999999999 788998 5556778
Q ss_pred CceEEEEEEecCCCCCCceeEEEEEeceeeccc----------cccceEEEccccCCCCceEEeecCCCCceeeeceeee
Q psy17645 118 NKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA----------QTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKALY 187 (207)
Q Consensus 118 ~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~----------~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~~~ 187 (207)
...+.+.+.|++..+-++-||.+.++++-+... .-+..|+++.+.-. +-.|||.|-+++-.
T Consensus 67 deplqi~lld~dtysandaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtih---------girgeinvivkvdl 137 (1169)
T KOG1031|consen 67 DEPLQIRLLDHDTYSANDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIH---------GIRGEINVIVKVDL 137 (1169)
T ss_pred cCCeeEEEecccccccccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecc---------cccceeEEEEEEee
Confidence 899999999999999999999999998865322 23458999986433 33466665445443
No 121
>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus). Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos
Probab=98.50 E-value=1.7e-07 Score=64.69 Aligned_cols=102 Identities=25% Similarity=0.403 Sum_probs=77.7
Q ss_pred EEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 42 LSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
+++++++|++|.-...- .....|++--+--.+...++|+..+...+|.|.|+|.|. +....+..-.
T Consensus 1 iwitv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFq-------------i~l~qL~~V~ 67 (103)
T cd08684 1 IWITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFA-------------IKLQNLQTVR 67 (103)
T ss_pred CEEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHH-------------HHHhhccceE
Confidence 36889999998765433 335567776553234468899999999999999999998 4556677788
Q ss_pred EEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEc
Q psy17645 121 LVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWREL 159 (207)
Q Consensus 121 l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L 159 (207)
|.|.|+. ...+.+.+|.|.+.|.++. .+..++|.++
T Consensus 68 L~fsv~~--~~~RKe~iG~~sL~l~s~g-eeE~~HW~e~ 103 (103)
T cd08684 68 LVFKIQT--QTPRKRTIGECSLSLRTLS-TQETDHWLEI 103 (103)
T ss_pred EEEEeec--cCCccceeeEEEeecccCC-HHHhhhhhcC
Confidence 9999988 4567789999999999873 3567788653
No 122
>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae. This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that
Probab=98.44 E-value=1.1e-06 Score=62.96 Aligned_cols=85 Identities=21% Similarity=0.344 Sum_probs=67.6
Q ss_pred EEEEEEEeeCCCCCC---CCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 42 LSVTVIQAEDLPALD---MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 42 L~V~I~~a~nL~~~~---~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
|.|+|..++++.... ..+.+++|+.+.+ ++..+.+|+.. .+|.|+|.|.|++ + ..
T Consensus 1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKv--ed~~kaRTr~s---rnd~WnE~F~i~V----------------d-k~ 58 (109)
T cd08689 1 LTITITSARDVDHIASPRFSKRPETYVSIKV--EDVERARTKPS---RNDRWNEDFEIPV----------------E-KN 58 (109)
T ss_pred CEEEEEEEecCccccchhhccCCCcEEEEEE--CCEEEEeccCC---CCCcccceEEEEe----------------c-CC
Confidence 578899999998777 5688999999999 45567788774 7899999999984 2 45
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEeceeecc
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~ 149 (207)
..+.+.|||... ...--+|...+.++++..
T Consensus 59 nEiel~VyDk~~-~~~~Pi~llW~~~sdi~E 88 (109)
T cd08689 59 NEEEVIVYDKGG-DQPVPVGLLWLRLSDIAE 88 (109)
T ss_pred cEEEEEEEeCCC-CeecceeeehhhHHHHHH
Confidence 799999999865 334568999999888643
No 123
>PLN02352 phospholipase D epsilon
Probab=98.40 E-value=3.4e-06 Score=78.81 Aligned_cols=102 Identities=20% Similarity=0.272 Sum_probs=75.6
Q ss_pred CCEEEEEEEEeeCCCCCC----C-CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc
Q psy17645 39 ANSLSVTVIQAEDLPALD----M-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY 113 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~----~-~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~ 113 (207)
.+.|.++|++|+-+...- . ....+||+.+.+ .+.+..+| .+..+|.|+|.|.+.+ -..
T Consensus 9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~--~~~~v~rt---~~~~~p~w~e~f~i~~------------ah~ 71 (758)
T PLN02352 9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKI--GNKKVAKT---SHEYDRVWNQTFQILC------------AHP 71 (758)
T ss_pred ccceEEEEEEeeehhhcccccccccCCCCceEEEEe--CCcEEecC---CCCCCCccccceeEEe------------eee
Confidence 578999999997332211 0 112399999999 46677788 4455999999999886 221
Q ss_pred CcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccc-cceEEEccccCCC
Q psy17645 114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQT-IEEWRELQSVEGE 165 (207)
Q Consensus 114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~-~~~w~~L~~~~~~ 165 (207)
....+.|.|.| ...+||.+.+|..++..+.. ++.|+++....++
T Consensus 72 ---~~~~~~f~vk~-----~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~ 116 (758)
T PLN02352 72 ---LDSTITITLKT-----KCSILGRFHIQAHQIVTEASFINGFFPLIMENGK 116 (758)
T ss_pred ---cCCcEEEEEec-----CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCC
Confidence 22478899987 24799999999999988866 8999999886655
No 124
>KOG2060|consensus
Probab=98.39 E-value=2.4e-07 Score=79.19 Aligned_cols=122 Identities=26% Similarity=0.417 Sum_probs=98.4
Q ss_pred CCCceeEEEEECcCCEEEEEEEEeeCCCCCCCC-CCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccc
Q psy17645 26 IFKPEQTLEYDFNANSLSVTVIQAEDLPALDMG-GTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLN 102 (207)
Q Consensus 26 ~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~-g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~ 102 (207)
++++++.+.- ..+.+.|.|++|++|...... ..+.||++|++++.+. .+.+|+...++.+|.+.+...|.
T Consensus 257 mg~iq~~~~d--~~g~l~vEii~ar~l~~k~~~k~~~apyVkVYlL~~g~c~ak~ktk~A~kT~~plyqq~l~f~----- 329 (405)
T KOG2060|consen 257 MGDIQIALMD--SKGDLEVEIIRARGLVVKPGSKSLPAPYVKVYLLENGFCIAKKKTKSARKTLDPLYQQQLSFD----- 329 (405)
T ss_pred cccchhhhhc--ccCceeEEEEecccccccCCcccccCceeEEEEcCCCceecccccccccccCchhhhhhhhhc-----
Confidence 3556655543 578999999999999876543 3689999999986543 37789999999999998888887
Q ss_pred ccceeccCcccCcCCCceEEEEEE-ecCCCCCCceeEEEEEeceeecccc-ccceEEEccccCCC
Q psy17645 103 RSEVFEQGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQIDLAQ-TIEEWRELQSVEGE 165 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~l~i~v~-d~~~~~~~~~lG~~~v~L~~l~~~~-~~~~w~~L~~~~~~ 165 (207)
+.+..+.|.+.+| |+.++.++.|+|.+++-+.++.... ....||+|++....
T Consensus 330 -----------~sp~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyKlfgsssl 383 (405)
T KOG2060|consen 330 -----------QSPPGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYKLFGSSSL 383 (405)
T ss_pred -----------cCCCccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeeeccCCccC
Confidence 2336689999999 5788888999999999999998775 88899999976554
No 125
>KOG1013|consensus
Probab=98.34 E-value=6.8e-08 Score=81.26 Aligned_cols=112 Identities=33% Similarity=0.461 Sum_probs=96.0
Q ss_pred CCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeeccccc
Q psy17645 27 FKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~ 104 (207)
+...+.+.|+..+..+.++|.+|..|.+++..+..|||+...++|... .+.+|++..++.||.|+|+..+..
T Consensus 80 g~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~------ 153 (362)
T KOG1013|consen 80 GALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEG------ 153 (362)
T ss_pred cchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecc------
Confidence 556788899999999999999999999999999999999999987544 478999999999999999887763
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccc
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~ 150 (207)
+..++...+.+.+.+++.+.+.+++++|+..+++..+...
T Consensus 154 ------i~~~~~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~ 193 (362)
T KOG1013|consen 154 ------ITDDDTHLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPL 193 (362)
T ss_pred ------cccchhhhhhhheeeccCcccccccCcccchhhhhccChh
Confidence 4445556678889999999999999999999888777544
No 126
>KOG1326|consensus
Probab=98.27 E-value=4e-07 Score=85.71 Aligned_cols=127 Identities=23% Similarity=0.227 Sum_probs=98.4
Q ss_pred CCceeEEEEEC-cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEee-eccccc
Q psy17645 27 FKPEQTLEYDF-NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKV-SFLNRS 104 (207)
Q Consensus 27 ~~~~~~l~y~~-~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~-~~~~~~ 104 (207)
-.|.+++.++. ....+++.|.+|++|...+..+.+|||+.+.+ .++.+.|.++..|++|.|+++..|.- .+....
T Consensus 192 ~~p~~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f---~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~ 268 (1105)
T KOG1326|consen 192 SVPEFSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEF---CGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEA 268 (1105)
T ss_pred ccCceEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhc---ccccceeEeecCcCCCCccceeeccceeecCcc
Confidence 34788888877 77789999999999999999999999999987 57899999999999999999998852 111111
Q ss_pred ceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCC
Q psy17645 105 EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEG 164 (207)
Q Consensus 105 ~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~ 164 (207)
..-......+.++++|.++.+.++|+|+......-+ ...+...|+++.+...
T Consensus 269 -------~~~~~~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~-~~~p~lkw~p~~rg~~ 320 (1105)
T KOG1326|consen 269 -------HLVLKNPPIRVFEVYDLDRSGINEFKGRKKQRPYVM-VQCPALKWVPTMRGAF 320 (1105)
T ss_pred -------chhhcCCCeEEEEeehhhhhchHHhhcccccceEEE-ecCCccceEEeecccc
Confidence 111113468899999999999999999866654433 3367778999886443
No 127
>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins. C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc
Probab=98.14 E-value=3e-06 Score=62.72 Aligned_cols=97 Identities=19% Similarity=0.307 Sum_probs=68.5
Q ss_pred CCcEEEEEEEC-CCCceEEeeeecCCCCCeEecEEEEeeecc-cccceeccCccc-CcCCCceEEEEEEecCCC------
Q psy17645 61 SDPYVKVYLLP-DKKKKFETKVHRKTLNPVFNETFVFKVSFL-NRSEVFEQGVPY-ADAMNKTLVFAIFDFDRF------ 131 (207)
Q Consensus 61 ~dpyv~v~l~~-~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~-~~~~~~~~~~~~-~~~~~~~l~i~v~d~~~~------ 131 (207)
.++|+.+.+.. .+....+|+++.+++.|.|+..+.|+++.+ .+.+ =+ ...+ +.+....+.++||+...-
T Consensus 33 VN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~-Ge-~~sLAElLe~~eiil~vwHr~~~s~~~~~ 110 (143)
T cd08683 33 VNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNS-GE-AISLAELLESAEIILEVWHRNPKSAGDTI 110 (143)
T ss_pred cceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCC-Cc-cccHHHHhhcceEEeeeeecCCcccccee
Confidence 58999998643 345678999999999999999999987421 1111 00 0111 234668999999986532
Q ss_pred ----CCCceeEEEEEeceeeccc-cccceEEEc
Q psy17645 132 ----SKHDQIGEVKVALCQIDLA-QTIEEWREL 159 (207)
Q Consensus 132 ----~~~~~lG~~~v~L~~l~~~-~~~~~w~~L 159 (207)
.+|-.+|.+.+|+.++... .++..||++
T Consensus 111 ~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi 143 (143)
T cd08683 111 KIETSGDILLGTVKIPLRDLLTKRSGITGWYPI 143 (143)
T ss_pred ccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence 2445899999999997544 577899875
No 128
>KOG1326|consensus
Probab=98.06 E-value=4.1e-06 Score=79.10 Aligned_cols=92 Identities=33% Similarity=0.491 Sum_probs=78.1
Q ss_pred CcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645 37 FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA 114 (207)
Q Consensus 37 ~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~ 114 (207)
+....++|++++|.+|.+.+..|.+|||+.+.+ +++ .-+...+.++++|+|++.|.+.++ +|
T Consensus 610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~l---Gk~~~~d~~~yip~tlnPVfgkmfel~~~-----------lp-- 673 (1105)
T KOG1326|consen 610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLL---GKKRTLDRAHYIPNTLNPVFGKMFELECL-----------LP-- 673 (1105)
T ss_pred cceeeEEEEEEEeeeccccCCCCCcCceeeeee---ccchhhhhhhcCcCCCCcHHHHHHHhhcc-----------cc--
Confidence 456678899999999999999999999999998 333 356677889999999999988751 44
Q ss_pred cCCCceEEEEEEecCCCCCCceeEEEEEecee
Q psy17645 115 DAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ 146 (207)
Q Consensus 115 ~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~ 146 (207)
....+.+.|||++..+.|+.+|+..++|.+
T Consensus 674 --~ek~l~v~vyd~D~~~~d~~iget~iDLEn 703 (1105)
T KOG1326|consen 674 --FEKDLIVEVYDHDLEAQDEKIGETTIDLEN 703 (1105)
T ss_pred --hhhcceeEEEEeecccccchhhceehhhhh
Confidence 446889999999999999999999999876
No 129
>KOG3837|consensus
Probab=97.95 E-value=2.5e-06 Score=73.93 Aligned_cols=140 Identities=19% Similarity=0.251 Sum_probs=104.0
Q ss_pred eEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEEC--CCCceEEeeeecCCCCCeEecEEEEeeec---ccccc
Q psy17645 31 QTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP--DKKKKFETKVHRKTLNPVFNETFVFKVSF---LNRSE 105 (207)
Q Consensus 31 ~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~--~~~~~~~T~~~~~t~~P~w~e~~~f~~~~---~~~~~ 105 (207)
+.+.-+.....|.+.|+++++++........|-|+++.+.- +..++.+|.+++.+.+|.|+|.|-+.++. .++..
T Consensus 358 v~~f~dl~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~f 437 (523)
T KOG3837|consen 358 VAFFEDLKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREF 437 (523)
T ss_pred hhhccccchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHH
Confidence 33444556778889999999888765444567899988742 23467899999999999999999988632 12211
Q ss_pred eeccCcccCcCCCceEEEEEEecCCC-CCCceeEEEEEeceeeccccccceEEEccccCCCCceEEeecCCCCceeeece
Q psy17645 106 VFEQGVPYADAMNKTLVFAIFDFDRF-SKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLDGPKGNLATGKK 184 (207)
Q Consensus 106 ~~~~~~~~~~~~~~~l~i~v~d~~~~-~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~ 184 (207)
+ .......+.|++|+.+.+ .+|.++|.+.+.|.-|......+..++|.+..+.+++++ ++.|+++
T Consensus 438 --q-----R~fkr~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkL-------evKvRiR 503 (523)
T KOG3837|consen 438 --Q-----RRFKRLGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKL-------EVKVRIR 503 (523)
T ss_pred --H-----HHHHhcCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCee-------EEEEEEe
Confidence 0 011357889999998654 667899999999999888888889999999888888877 6666443
No 130
>PLN02964 phosphatidylserine decarboxylase
Probab=97.32 E-value=0.00049 Score=63.96 Aligned_cols=110 Identities=16% Similarity=0.184 Sum_probs=80.8
Q ss_pred eEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccC
Q psy17645 31 QTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQG 110 (207)
Q Consensus 31 ~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~ 110 (207)
-.+..+.=.+...++++.|+ ....|+|..+.. .+.+.++|.+.+.|.+|+||+...|.+
T Consensus 45 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~--~g~~~f~t~~~~~~~~p~~~~~~~~~~------------ 103 (644)
T PLN02964 45 RAVSAEDFSGIALLTLVGAE-------MKFKDKWLACVS--FGEQTFRTETSDSTDKPVWNSEKKLLL------------ 103 (644)
T ss_pred cceecccccCeEEEEeehhh-------hccCCcEEEEEE--ecceeeeeccccccCCcccchhhceEe------------
Confidence 34555666788899998886 234688766654 377899999999999999999888874
Q ss_pred cccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccc--eEEEccccCC
Q psy17645 111 VPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE--EWRELQSVEG 164 (207)
Q Consensus 111 ~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~--~w~~L~~~~~ 164 (207)
.+ .+ .....+.||+.++++.++++|.+.++|.++...+..+ .-|.+.++.+
T Consensus 104 ~~-~~--~~~~~~~~~~~~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~dg 156 (644)
T PLN02964 104 EK-NG--PHLARISVFETNRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPSS 156 (644)
T ss_pred cc-CC--cceEEEEEEecCCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCCC
Confidence 22 22 2456999999999999999999999988875553322 2245555444
No 131
>KOG1327|consensus
Probab=97.28 E-value=0.0015 Score=58.93 Aligned_cols=114 Identities=25% Similarity=0.380 Sum_probs=80.5
Q ss_pred CCCCCceeEEEEEC--cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEee
Q psy17645 24 LPIFKPEQTLEYDF--NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKV 98 (207)
Q Consensus 24 ~~~~~~~~~l~y~~--~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~ 98 (207)
.+.+...+.+..+- +......-..+|++|...+..+.+|||..+.-..+.. ..++|.+++++++|.|.+ |.+..
T Consensus 118 ~~~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~ 196 (529)
T KOG1327|consen 118 KNAGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISL 196 (529)
T ss_pred ccCCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccch
Confidence 44444444444443 3445555667789999999999999999886532222 367999999999999954 43332
Q ss_pred ecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecc
Q psy17645 99 SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~ 149 (207)
.-+|. .+ ....+.+.+||++..+.++++|++..++..+..
T Consensus 197 ~~l~~----------~~-~~~~~~i~~~d~~~~~~~~~ig~~~tt~~~~~~ 236 (529)
T KOG1327|consen 197 QSLCS----------KD-GNRPIQIECYDYDSNGKHDLIGKFQTTLSELQE 236 (529)
T ss_pred hhhcc----------cC-CCCceEEEEeccCCCCCcCceeEecccHHHhcc
Confidence 11111 11 357888999999998888999999999988754
No 132
>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c
Probab=96.96 E-value=0.044 Score=42.32 Aligned_cols=92 Identities=14% Similarity=0.151 Sum_probs=61.7
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc---eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA 116 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~ 116 (207)
..++|+|..+.++... ...+.|+.+.+..++.. ...|+.+.. .++.|||.+.|++ --.+-.
T Consensus 8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI------------~i~dLP 71 (158)
T cd08398 8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDI------------YIPDLP 71 (158)
T ss_pred CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEccc------------chhcCC
Confidence 3688999999988764 34688999887533221 223444443 5799999999985 111222
Q ss_pred CCceEEEEEEecCCCC----CCceeEEEEEeceee
Q psy17645 117 MNKTLVFAIFDFDRFS----KHDQIGEVKVALCQI 147 (207)
Q Consensus 117 ~~~~l~i~v~d~~~~~----~~~~lG~~~v~L~~l 147 (207)
....|+|.+|+..... ....+|.+.++|-+.
T Consensus 72 r~ArL~iti~~~~~~~~~k~~~~~iG~~ni~LFd~ 106 (158)
T cd08398 72 RSARLCLSICSVKGRKGAKEEHCPLAWGNINLFDY 106 (158)
T ss_pred hhheEEEEEEEEecccCCCCceEEEEEEEEEEECC
Confidence 5679999999875321 224699999998774
No 133
>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length.
Probab=96.49 E-value=0.048 Score=47.22 Aligned_cols=107 Identities=18% Similarity=0.313 Sum_probs=78.3
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceE
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTL 121 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l 121 (207)
+.+.|.+|+|.+.. ..-...+...+ ++....|..+..+.+|.|+..+...+ +|.. +..-......|
T Consensus 2 ivl~i~egr~F~~~---~~~~~vv~a~~---ng~~l~TDpv~~~~~p~f~teL~WE~---Dr~~-----l~~~r~~~tPi 67 (340)
T PF12416_consen 2 IVLSILEGRNFPQR---PRHPIVVEAKF---NGESLETDPVPHTESPQFNTELAWEC---DRKA-----LKQHRLQRTPI 67 (340)
T ss_pred EEEEEecccCCCCC---CCccEEEEEEe---CCceeeecCCCCCCCceeecceeeec---cHHH-----HHHhhccCCce
Confidence 67899999998865 23455666776 56788899899999999998887763 1111 11122356889
Q ss_pred EEEEEecC-CCCCCceeEEEEEeceee---ccc--cccceEEEcccc
Q psy17645 122 VFAIFDFD-RFSKHDQIGEVKVALCQI---DLA--QTIEEWRELQSV 162 (207)
Q Consensus 122 ~i~v~d~~-~~~~~~~lG~~~v~L~~l---~~~--~~~~~w~~L~~~ 162 (207)
.+++|..+ .....+.+|.+.++|... ..+ .....||.|..-
T Consensus 68 Kl~c~a~~~~~~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~ 114 (340)
T PF12416_consen 68 KLQCFAVDGSTGKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSS 114 (340)
T ss_pred EEEEEEecCCCCcceeccEEEEEccccccccccccccCCCeeEcccc
Confidence 99999887 446668999999999887 444 345589999875
No 134
>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty
Probab=96.35 E-value=0.045 Score=42.87 Aligned_cols=94 Identities=22% Similarity=0.271 Sum_probs=63.4
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA 116 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~ 116 (207)
..++|+|..+.++.. .....+.|+.+.+...+. ....|+.+.....+.|+|.+.|++ .-..-.
T Consensus 8 ~~f~i~i~~~~~~~~--~~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I------------~i~dLP 73 (173)
T cd08693 8 EKFSITLHKISNLNA--AERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDI------------NVCDLP 73 (173)
T ss_pred CCEEEEEEEeccCcc--CCCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEccc------------chhcCC
Confidence 368899999999876 234577788887653222 134555555556799999999985 111222
Q ss_pred CCceEEEEEEecCCCC----------------CCceeEEEEEeceee
Q psy17645 117 MNKTLVFAIFDFDRFS----------------KHDQIGEVKVALCQI 147 (207)
Q Consensus 117 ~~~~l~i~v~d~~~~~----------------~~~~lG~~~v~L~~l 147 (207)
....|+|.+|+..... ....+|.+.++|-+.
T Consensus 74 r~ArLciti~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~ 120 (173)
T cd08693 74 RMARLCFAIYEVSKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDY 120 (173)
T ss_pred hhHeEEEEEEEecccccccccccccccccccCcceEEEEEeEEEEcc
Confidence 5678999999865322 135799988888764
No 135
>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks). C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm
Probab=96.06 E-value=0.07 Score=40.79 Aligned_cols=95 Identities=19% Similarity=0.192 Sum_probs=61.9
Q ss_pred CEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcC
Q psy17645 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA 116 (207)
Q Consensus 40 ~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~ 116 (207)
..++|++....++... .....+.|+.+.+...+. ....|.......++.|+|.+.|++. -..-.
T Consensus 8 ~~~~i~i~~~~~~~~~-~~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~------------~~~LP 74 (156)
T cd08380 8 FNLRIKIHGITNINLL-DSEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDIL------------ISDLP 74 (156)
T ss_pred CCeEEEEEeecccccc-CCCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccch------------hhcCC
Confidence 3567777777776542 134567888887753332 1334444444467999999999851 11222
Q ss_pred CCceEEEEEEecCCCC--CCceeEEEEEeceee
Q psy17645 117 MNKTLVFAIFDFDRFS--KHDQIGEVKVALCQI 147 (207)
Q Consensus 117 ~~~~l~i~v~d~~~~~--~~~~lG~~~v~L~~l 147 (207)
....|+|.+|+..... .+..+|.+.++|-+.
T Consensus 75 ~~arL~itl~~~~~~~~~~~~~iG~~~~~lFd~ 107 (156)
T cd08380 75 REARLCLSIYAVSEPGSKKEVPLGWVNVPLFDY 107 (156)
T ss_pred hhheEEEEEEEEecCCCCcceEEEEEeEEeEcc
Confidence 4678999999976543 456899999998774
No 136
>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty
Probab=96.03 E-value=0.041 Score=42.49 Aligned_cols=78 Identities=19% Similarity=0.198 Sum_probs=54.7
Q ss_pred CCCCCcEEEEEEECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCC
Q psy17645 58 GGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH 134 (207)
Q Consensus 58 ~g~~dpyv~v~l~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~ 134 (207)
...++.|+.+.+..++. ....|..+..+..+.|||.+.|++. -.+-.....|+|.||+....++.
T Consensus 27 ~~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~------------i~dLP~~a~L~iti~~~~~~~~~ 94 (159)
T cd08397 27 SPNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIK------------YSDLPRNSQLAITIWDVSGTGKA 94 (159)
T ss_pred CCCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccc------------hhcCChhheEEEEEEEecCCCCc
Confidence 45678899988753332 1335556666677899999999851 11222467999999998765566
Q ss_pred ceeEEEEEeceee
Q psy17645 135 DQIGEVKVALCQI 147 (207)
Q Consensus 135 ~~lG~~~v~L~~l 147 (207)
..+|.+.++|-+.
T Consensus 95 ~~vg~~~~~lFd~ 107 (159)
T cd08397 95 VPFGGTTLSLFNK 107 (159)
T ss_pred eEEEEEEEeeECC
Confidence 7899999998764
No 137
>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []. Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).
Probab=95.64 E-value=0.63 Score=34.66 Aligned_cols=110 Identities=23% Similarity=0.287 Sum_probs=66.4
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc--eEEeeeec-CCCCCeEecEEEEeeecccccceeccCcccCc
Q psy17645 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHR-KTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD 115 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~--~~~T~~~~-~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~ 115 (207)
..++.+.|.+..+++. .+..+.+.+...+.. ...|.... ....-.|++.|.+.+.+.-... ...
T Consensus 6 kf~~~l~i~~l~~~p~------~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k-------~~~ 72 (143)
T PF10358_consen 6 KFQFDLTIHELENLPS------SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKK-------SKE 72 (143)
T ss_pred eEEEEEEEEEeECcCC------CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCC-------CCc
Confidence 3457788888888775 233334433212222 34444433 4567899999999875333221 011
Q ss_pred CCCceEEEEEEecCCCCCCceeEEEEEeceeeccc--cccceEEEccc
Q psy17645 116 AMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWRELQS 161 (207)
Q Consensus 116 ~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~--~~~~~w~~L~~ 161 (207)
.....+.|.|+.....++...+|.+.++|++.... .....-+.|..
T Consensus 73 ~~~K~~~~~v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~ 120 (143)
T PF10358_consen 73 FQPKELKFSVFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKK 120 (143)
T ss_pred EeeEEEEEEEEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCcc
Confidence 35578899999875333336899999999998764 33444555544
No 138
>PF15627 CEP76-C2: CEP76 C2 domain
Probab=95.62 E-value=0.17 Score=38.98 Aligned_cols=108 Identities=13% Similarity=0.120 Sum_probs=69.0
Q ss_pred CcCCEEEEEEEEeeCCCCCCCC--CCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccce--eccCcc
Q psy17645 37 FNANSLSVTVIQAEDLPALDMG--GTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEV--FEQGVP 112 (207)
Q Consensus 37 ~~~~~L~V~I~~a~nL~~~~~~--g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~--~~~~~~ 112 (207)
+....|.+.|..++.....-.. +..+..+.+.+. -..++++|+.+..+.+|.|+|.|.|++....-... ...-+
T Consensus 6 ~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~-f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~ll- 83 (156)
T PF15627_consen 6 PGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLH-FRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLL- 83 (156)
T ss_pred CCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEE-ecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhh-
Confidence 3466788999988865543321 455555666553 35689999999999999999999998521110000 00000
Q ss_pred cCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecc
Q psy17645 113 YADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149 (207)
Q Consensus 113 ~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~ 149 (207)
. ....+.+.+-..+..+...++|.-.++...+..
T Consensus 84 --s-~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~ 117 (156)
T PF15627_consen 84 --S-ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLC 117 (156)
T ss_pred --c-CCCceEEEEEEecCCCceEeeeeceehHHHHhc
Confidence 0 235677777777766666788887777666533
No 139
>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks). There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c
Probab=95.28 E-value=0.14 Score=39.90 Aligned_cols=97 Identities=20% Similarity=0.218 Sum_probs=64.6
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc---eEEeeeec----CCCCCeEecEEEEeeecccccceeccCc
Q psy17645 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHR----KTLNPVFNETFVFKVSFLNRSEVFEQGV 111 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~----~t~~P~w~e~~~f~~~~~~~~~~~~~~~ 111 (207)
...+.|+|..+.+++..-.....+.|+.+.+...+.. ...|+... ....+.|||.+.|++ .
T Consensus 7 ~~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i------------~ 74 (171)
T cd04012 7 TDLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPI------------P 74 (171)
T ss_pred cccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECcc------------c
Confidence 3467888999999887654556889999987533221 22343221 233577999999985 1
Q ss_pred ccCcCCCceEEEEEEecCCCC---------CCceeEEEEEeceee
Q psy17645 112 PYADAMNKTLVFAIFDFDRFS---------KHDQIGEVKVALCQI 147 (207)
Q Consensus 112 ~~~~~~~~~l~i~v~d~~~~~---------~~~~lG~~~v~L~~l 147 (207)
-..-.....|+|.+|+..... .+..+|-+.++|-+.
T Consensus 75 i~~LPrearL~itl~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~ 119 (171)
T cd04012 75 VCQLPRESRLVLTLYGTTSSPDGGSNKQRMGPEELGWVSLPLFDF 119 (171)
T ss_pred hhcCChhHEEEEEEEEEecCCccccccccccceEEEEEeEeeEcc
Confidence 112225679999999876543 346899999998774
No 140
>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins. Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int
Probab=94.15 E-value=1 Score=35.74 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=46.4
Q ss_pred ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCC-C-CceeEEEEEecee
Q psy17645 75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFS-K-HDQIGEVKVALCQ 146 (207)
Q Consensus 75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~-~-~~~lG~~~v~L~~ 146 (207)
..++|-+...+.+|.|+|++.+. +|.+......|.|++++...-. . ...+|-+.+||.+
T Consensus 53 se~~S~V~yH~~~P~W~EtiKi~-------------lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~~ 113 (189)
T cd08695 53 SEYRSFVLYHNNSPRWNETIKLP-------------IPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLMR 113 (189)
T ss_pred ceEEEEEEEcCCCCCCceeEEEe-------------cChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeecc
Confidence 35788888888899999999998 7878778899999998754321 1 2569999999864
No 141
>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....
Probab=93.50 E-value=0.75 Score=34.52 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=40.5
Q ss_pred EeeeecCC-CCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCC----ceeEEEEEeceee
Q psy17645 78 ETKVHRKT-LNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH----DQIGEVKVALCQI 147 (207)
Q Consensus 78 ~T~~~~~t-~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~----~~lG~~~v~L~~l 147 (207)
.|.....+ ..+.|+|.+.|++ .-..-.....|+|.||........ ..||-+.++|-+.
T Consensus 23 ~T~~~~~~~~~~~W~e~l~F~i------------~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~ 85 (142)
T PF00792_consen 23 STSYVPFSFSRPKWDEWLTFPI------------PISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDY 85 (142)
T ss_dssp E-S-EESS-SSEEEEEEEEEEE------------EGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-T
T ss_pred eccccccccccceEeeEEEeec------------ChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECC
Confidence 56655555 7999999999985 111223567899999998765544 6899999998775
No 142
>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks). PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir
Probab=93.48 E-value=2.7 Score=33.09 Aligned_cols=76 Identities=11% Similarity=0.036 Sum_probs=47.3
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCC--ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCC
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMN 118 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~--~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
.++|+|..+.++.. +.......||.+.+...+. ...+|.....+.++.|||.+.|++ .-.+-...
T Consensus 11 ~friki~~~~~~~~-~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I------------~~~dLP~~ 77 (178)
T cd08399 11 KFRVKILGIDIPVL-PRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDI------------KIKDLPKG 77 (178)
T ss_pred CEEEEEEeecccCc-CCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECcc------------ccccCChh
Confidence 67788887764332 2233345777776643221 123566666667799999999985 11122356
Q ss_pred ceEEEEEEecC
Q psy17645 119 KTLVFAIFDFD 129 (207)
Q Consensus 119 ~~l~i~v~d~~ 129 (207)
..|+|.||+..
T Consensus 78 arLc~ti~~~~ 88 (178)
T cd08399 78 ALLNLQIYCGK 88 (178)
T ss_pred hEEEEEEEEEe
Confidence 79999999864
No 143
>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins. Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=93.42 E-value=1.7 Score=34.67 Aligned_cols=58 Identities=17% Similarity=0.217 Sum_probs=45.3
Q ss_pred ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCC----CCCceeEEEEEece
Q psy17645 75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRF----SKHDQIGEVKVALC 145 (207)
Q Consensus 75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~----~~~~~lG~~~v~L~ 145 (207)
..++|-+.....+|.|+|++.+. +|.+......|.|++++...- .....+|-+.+||.
T Consensus 53 se~~S~V~Yh~~~P~W~EtIKl~-------------lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~ 114 (196)
T cd08694 53 DEYKSVIYYQVDKPKWFETFKVA-------------IPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM 114 (196)
T ss_pred eeEEEEEEeecCCCCCceeEEEe-------------cChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence 36778787778899999999998 787887889999999875421 11246899999986
No 144
>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A.
Probab=92.82 E-value=0.87 Score=35.74 Aligned_cols=59 Identities=19% Similarity=0.297 Sum_probs=37.7
Q ss_pred ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCC-C--CceeEEEEEecee
Q psy17645 75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFS-K--HDQIGEVKVALCQ 146 (207)
Q Consensus 75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~-~--~~~lG~~~v~L~~ 146 (207)
..+.|.+...+..|.|+|++.+. +|........|.|++++...-. . ...+|-+.+||.+
T Consensus 59 ~~~~S~v~yh~k~P~f~deiKi~-------------LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~ 120 (184)
T PF14429_consen 59 TSYYSSVYYHNKNPQFNDEIKIQ-------------LPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD 120 (184)
T ss_dssp S-EE----TT-SS-EEEEEEEEE-------------E-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB-
T ss_pred eEEEEEEEecCCCCCccEEEEEE-------------cCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee
Confidence 35677777788899999999998 6777767889999999865322 1 1689999999987
No 145
>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain. Outlier of C2 family.
Probab=92.67 E-value=1.1 Score=31.63 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=48.2
Q ss_pred EEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc---eEEeeeecCCCCCeEecEEEEeeecccccceeccCccc-CcCC
Q psy17645 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY-ADAM 117 (207)
Q Consensus 42 L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~-~~~~ 117 (207)
+.+.+....++.........+.|+.+.+..++.. ...|+.+.....+.|||...|++ .. +-..
T Consensus 13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i-------------~i~~LPr 79 (100)
T smart00142 13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPI-------------QISDLPR 79 (100)
T ss_pred eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccC-------------chhcCCh
Confidence 5566666666655443333588999987533321 23555555566789999999985 22 2224
Q ss_pred CceEEEEEEecCC
Q psy17645 118 NKTLVFAIFDFDR 130 (207)
Q Consensus 118 ~~~l~i~v~d~~~ 130 (207)
...|+|.+|+...
T Consensus 80 ~a~L~~~i~~~~~ 92 (100)
T smart00142 80 EARLCITIYEVKN 92 (100)
T ss_pred hhEEEEEEEEeeC
Confidence 6789999998653
No 146
>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins. Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo
Probab=88.53 E-value=2.3 Score=33.25 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=41.5
Q ss_pred EeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCC-----CCCceeEEEEEecee
Q psy17645 78 ETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRF-----SKHDQIGEVKVALCQ 146 (207)
Q Consensus 78 ~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~-----~~~~~lG~~~v~L~~ 146 (207)
-+.++.....|.|++++.+. +|........|.|++++...- .....+|-+.+||.+
T Consensus 55 ~~sv~~~~k~p~f~deiKi~-------------LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~ 115 (178)
T cd08679 55 YTSVVYYHKNPVFNDEIKIQ-------------LPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD 115 (178)
T ss_pred EEEEEEcCCCCCCceeEEEe-------------cCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence 33444433899999999998 676655788999999986522 234689999999886
No 147
>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins. PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct
Probab=84.66 E-value=3.9 Score=28.72 Aligned_cols=64 Identities=17% Similarity=0.176 Sum_probs=46.7
Q ss_pred CCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEE
Q psy17645 60 TSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGE 139 (207)
Q Consensus 60 ~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~ 139 (207)
..+..+.+.+ ++.....|.-... .+..|++.|.+++ . .+.++.|.|+-.|- ..+.|-
T Consensus 8 ~~eV~avLkl--Dn~~VgqT~Wk~~-s~q~WDQ~Fti~L-------------d----RsRELEI~VywrD~---RslCav 64 (98)
T cd08687 8 CSEVSAVLKL--DNTVVGQTQWKPK-SNQAWDQSFTLEL-------------E----RSRELEIAVYWRDW---RSLCAV 64 (98)
T ss_pred ccceEEEEEE--cCeEEeecccccc-ccccccceeEEEe-------------e----cccEEEEEEEEecc---hhhhhh
Confidence 4566677776 4556667766655 4789999999984 2 56799999987763 257788
Q ss_pred EEEecee
Q psy17645 140 VKVALCQ 146 (207)
Q Consensus 140 ~~v~L~~ 146 (207)
..+.|.+
T Consensus 65 ~~lrLEd 71 (98)
T cd08687 65 KFLKLED 71 (98)
T ss_pred eeeEhhh
Confidence 8888877
No 148
>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande
Probab=84.49 E-value=5.7 Score=31.47 Aligned_cols=59 Identities=15% Similarity=0.234 Sum_probs=45.2
Q ss_pred ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecC--CCC-------CCceeEEEEEece
Q psy17645 75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFD--RFS-------KHDQIGEVKVALC 145 (207)
Q Consensus 75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~--~~~-------~~~~lG~~~v~L~ 145 (207)
....|.+.-.+.+|.|.|++-+. +|...-....|.|++++.. ... ....+|-+.+||.
T Consensus 56 ~~~~s~V~yh~k~P~f~dEiKI~-------------LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl 122 (185)
T cd08697 56 TSAYAAVLHHNQNPEFYDEIKIE-------------LPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLL 122 (185)
T ss_pred eEEEEEEEEcCCCCccceeEEEe-------------cCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeee
Confidence 35677777788999999999888 7776667889999999864 111 1246899999987
Q ss_pred e
Q psy17645 146 Q 146 (207)
Q Consensus 146 ~ 146 (207)
.
T Consensus 123 ~ 123 (185)
T cd08697 123 K 123 (185)
T ss_pred c
Confidence 5
No 149
>PF11618 DUF3250: Protein of unknown function (DUF3250); InterPro: IPR021656 This family of proteins represents a protein with unknown function. It may be the C2 domain from KIAA1005 however this cannot be confirmed. ; PDB: 2YRB_A.
Probab=83.93 E-value=2.7 Score=30.25 Aligned_cols=94 Identities=20% Similarity=0.198 Sum_probs=44.0
Q ss_pred CCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeecccc-
Q psy17645 73 KKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ- 151 (207)
Q Consensus 73 ~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~- 151 (207)
....+.|.++. ..+|.++-+..|.+..+. +-...+....+.++++.... ...+.+|.+++++..+....
T Consensus 9 dfEtq~Tpvv~-G~~p~y~fts~y~V~~d~--------~fl~YLq~~~~~lELhqa~g-~d~~tla~~~i~l~~ll~~~~ 78 (107)
T PF11618_consen 9 DFETQTTPVVR-GLNPFYDFTSQYKVTMDD--------LFLHYLQTGSLTLELHQALG-SDFETLAAGQISLRPLLESNG 78 (107)
T ss_dssp T---EE---EE-SSS----EEEEEEE--SH--------HHHHHHHH--EEEEEEEE-S-S-EEEEEEEEE--SHHHH--S
T ss_pred ceeeeccccee-CCCccceeEEEEEEEcCH--------HHHHHhhcCCEEEEEEeecc-CCeEEEEEEEeechhhhcCCC
Confidence 45677787777 579999988888741000 00112356789999998763 34679999999999875433
Q ss_pred -ccceEEEccccCCCCceEEeecCCCCceeeecee
Q psy17645 152 -TIEEWRELQSVEGEGGQVYYLDGPKGNLATGKKA 185 (207)
Q Consensus 152 -~~~~w~~L~~~~~~~~~~~~l~~~~g~i~~~~~~ 185 (207)
....-..|.+..++ .-|.+.+.+++
T Consensus 79 ~~i~~~~~l~g~~~~---------~~g~l~y~~rl 104 (107)
T PF11618_consen 79 ERIHGSATLVGVSGE---------DFGTLEYWIRL 104 (107)
T ss_dssp --EEEEEEE-BSSS----------TSEEEEEEEEE
T ss_pred ceEEEEEEEeccCCC---------eEEEEEEEEEe
Confidence 24445555544433 23556655554
No 150
>cd08696 C2_Dock-C C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins. Dock-C is one of 4 classes of Dock family proteins. The members here include: Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3. Dock-C members are GEFs for both Rac and Cdc42. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-C members contain a functionally uncharacterized domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strand
Probab=83.83 E-value=5.8 Score=31.25 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=44.5
Q ss_pred ceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCC------CCceeEEEEEecee
Q psy17645 75 KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFS------KHDQIGEVKVALCQ 146 (207)
Q Consensus 75 ~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~------~~~~lG~~~v~L~~ 146 (207)
....|.+...+.+|.|.|.+-+. +|...-....|.|++++..--. ....+|-+.+||-.
T Consensus 54 ~~~~S~V~yHnk~P~f~DEiKi~-------------LP~~l~~~hHLlFtF~Hvs~~~k~~~~~~e~~~Gys~lPL~~ 118 (179)
T cd08696 54 TEAYTAVTYHNKSPDFYDEIKIK-------------LPADLTDNHHLLFTFYHISCQKKQEGGSVETPIGYTWLPLLR 118 (179)
T ss_pred eeEEEEEEEeCCCCcccceEEEE-------------cCCCCCCCeEEEEEEEEeeccccccCCCccceEEEEEEeeec
Confidence 35677777888999999999888 7776667789999999843211 12468988888864
No 151
>KOG1452|consensus
Probab=78.84 E-value=10 Score=32.61 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=55.1
Q ss_pred CcCCEEEEEEEEeeCCCCCCC--CCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccC
Q psy17645 37 FNANSLSVTVIQAEDLPALDM--GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYA 114 (207)
Q Consensus 37 ~~~~~L~V~I~~a~nL~~~~~--~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~ 114 (207)
...+.|.++++.+|+|..... +-..+.|+.+.. +...+.+|.+......-.|.|+|..++ +
T Consensus 48 s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~--drqh~aRt~vrs~~~~f~w~e~F~~Dv------------v--- 110 (442)
T KOG1452|consen 48 SSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEP--DRQHPARTRVRSSGPGFAWAEDFKHDV------------V--- 110 (442)
T ss_pred cccceEEEEEecccccccChhccCceeeeeeeeee--cccCccccccccCCCCccchhhceeec------------c---
Confidence 467889999999999985543 334567777765 444566777777777778999998874 2
Q ss_pred cCCCceEEEEEEecCCCCCCce
Q psy17645 115 DAMNKTLVFAIFDFDRFSKHDQ 136 (207)
Q Consensus 115 ~~~~~~l~i~v~d~~~~~~~~~ 136 (207)
....+.+-||.++.-.++++
T Consensus 111 --~~~vl~~lvySW~pq~RHKL 130 (442)
T KOG1452|consen 111 --NIEVLHYLVYSWPPQRRHKL 130 (442)
T ss_pred --cceeeeEEEeecCchhhccc
Confidence 23456667776665444443
No 152
>PF15625 CC2D2AN-C2: CC2D2A N-terminal C2 domain
Probab=77.55 E-value=19 Score=27.88 Aligned_cols=85 Identities=18% Similarity=0.244 Sum_probs=59.0
Q ss_pred CCCCcEEEEEEECCCCceEEeeeec--CCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCce
Q psy17645 59 GTSDPYVKVYLLPDKKKKFETKVHR--KTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ 136 (207)
Q Consensus 59 g~~dpyv~v~l~~~~~~~~~T~~~~--~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~ 136 (207)
.....|+++.+ +++...+|+... ..+.-.|+|.|.+.+ . . -...|.+.||.... ..+.+
T Consensus 35 ~~~~~~ikl~~--N~k~V~~T~~~~l~~dF~v~f~~~f~v~i------------~---~-~Pesi~l~i~E~~~-~~~~~ 95 (168)
T PF15625_consen 35 QKTRYYIKLFF--NDKEVSRTRSRPLWSDFRVHFNEIFNVQI------------T---R-WPESIKLEIYEKSG-LSDRL 95 (168)
T ss_pred hheeEEEEEEE--CCEEEEeeeeEecCCCeEEeccCEEEEEE------------e---c-CCCEEEEEEEEccC-ccceE
Confidence 34567888877 456666666654 455677789888875 1 1 34699999999887 66789
Q ss_pred eEEEEEeceeeccc--cc--cceEEEcccc
Q psy17645 137 IGEVKVALCQIDLA--QT--IEEWRELQSV 162 (207)
Q Consensus 137 lG~~~v~L~~l~~~--~~--~~~w~~L~~~ 162 (207)
|+++.+|+-..... .. ...|+.+...
T Consensus 96 la~v~vpvP~~~~~~~~~~~~~~~~eFsS~ 125 (168)
T PF15625_consen 96 LAEVFVPVPGSTVHTSTDNVPLEEYEFSSD 125 (168)
T ss_pred EEEEEeeCCCCcccccccCCceEeEEEcCC
Confidence 99999998765333 11 4578777654
No 153
>KOG1327|consensus
Probab=71.88 E-value=12 Score=34.32 Aligned_cols=60 Identities=30% Similarity=0.519 Sum_probs=45.2
Q ss_pred eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCC----CCCCceeEEEEEeceeeccc
Q psy17645 76 KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDR----FSKHDQIGEVKVALCQIDLA 150 (207)
Q Consensus 76 ~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~----~~~~~~lG~~~v~L~~l~~~ 150 (207)
..+|..+.+..+|.|.+.|... ..++. -+.+.+.+++.+. ....+|+|++...+..+-..
T Consensus 42 ~~rte~i~~~~~p~f~~~~~l~-------------y~fE~--vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~ 105 (529)
T KOG1327|consen 42 VGRTEVIRNVLNPFFTKKFLLQ-------------YRFEK--VQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSS 105 (529)
T ss_pred ccceeeeeccCCccceeeechh-------------heeee--eeeEEEEEeecCCccCCcchhcccceeeeehhhhhhh
Confidence 4589999999999999988776 33332 3688888888654 35567999999998876444
No 154
>PF14186 Aida_C2: Cytoskeletal adhesion; PDB: 2QZQ_A 2QZ5_A.
Probab=69.90 E-value=47 Score=25.32 Aligned_cols=99 Identities=19% Similarity=0.180 Sum_probs=51.5
Q ss_pred ECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCc----eEEeeeec--CCCCCeEecEEEEeeecccccceecc
Q psy17645 36 DFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK----KFETKVHR--KTLNPVFNETFVFKVSFLNRSEVFEQ 109 (207)
Q Consensus 36 ~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~----~~~T~~~~--~t~~P~w~e~~~f~~~~~~~~~~~~~ 109 (207)
.+....|.|.|.+.. |... ....+||+.+++...++. .+.|.+.. ....-.|+....++
T Consensus 9 ~~g~t~l~v~Iekig-lkda--~~~~~P~~tVSV~D~~G~~ve~~QdTpv~~~~~~~yv~f~~~v~lq------------ 73 (147)
T PF14186_consen 9 EPGMTYLSVFIEKIG-LKDA--SQYIDPYFTVSVKDGNGKDVEPPQDTPVGSRREDNYVHFNNTVHLQ------------ 73 (147)
T ss_dssp -TT--EEEEEEEEEE--TTG--GG-EEEEEEEEEE-TTS-BSS--EE--S-SEEETTEEEEEEEEE-S------------
T ss_pred CCCCceEEEEEEEEE-ECCh--HHccCCeEEEEEECCCCCCccccccCCCcccccCCEEEEcccEEEc------------
Confidence 345667888887754 5433 567899999998654442 56666653 23344555555554
Q ss_pred CcccCcC-CCceEEEEEEecCCCCCCc-eeEEEEEeceeeccc
Q psy17645 110 GVPYADA-MNKTLVFAIFDFDRFSKHD-QIGEVKVALCQIDLA 150 (207)
Q Consensus 110 ~~~~~~~-~~~~l~i~v~d~~~~~~~~-~lG~~~v~L~~l~~~ 150 (207)
.+.+.+ .+..+.+++.++..-.+.. ..|=+.+.++++..+
T Consensus 74 -tple~lp~Gaai~fE~kH~K~kk~k~S~kcw~fme~dei~~g 115 (147)
T PF14186_consen 74 -TPLEKLPKGAAIFFEFKHYKPKKKKTSTKCWAFMELDEIKPG 115 (147)
T ss_dssp -S-GGGS-TT-EEEEEEEEEETTTTCEEEEEEEEEEGGG--SE
T ss_pred -CCHHHCCCceEEEEEEEeeeccceeeeeeEEEEEEhhhccCC
Confidence 233222 4678899999976533322 344477788777655
No 155
>KOG0906|consensus
Probab=63.67 E-value=50 Score=31.39 Aligned_cols=75 Identities=25% Similarity=0.329 Sum_probs=49.3
Q ss_pred CCCCcEEEEEEECCCCc---eEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCc-CCCceEEEEEEecCCCCCC
Q psy17645 59 GTSDPYVKVYLLPDKKK---KFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYAD-AMNKTLVFAIFDFDRFSKH 134 (207)
Q Consensus 59 g~~dpyv~v~l~~~~~~---~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~-~~~~~l~i~v~d~~~~~~~ 134 (207)
..++.|+.+...+.+.. .-+|+.+.....-.|||-+.+++ ...+ -....+.+.+|+.+.....
T Consensus 45 ~~~~l~~~c~v~~~~~~~~lP~~ts~~~~~~~~~wnewLtlpv-------------ky~dLt~~a~l~itiW~~n~~~~~ 111 (843)
T KOG0906|consen 45 TSSDLYVTCQVFAEGKPFALPVRTSYKAFSKRINWNEWLTLPV-------------KYSDLTRNAQLAITIWDVNGPKKA 111 (843)
T ss_pred cchhhhheeeeeccCCcccCCccccccccCCccchhhhhcccc-------------ccccccccceEEEEEEecCCCcee
Confidence 44567777766443322 23555555445556999998874 2222 2467899999998877777
Q ss_pred ceeEEEEEecee
Q psy17645 135 DQIGEVKVALCQ 146 (207)
Q Consensus 135 ~~lG~~~v~L~~ 146 (207)
.++|...+.+-.
T Consensus 112 ~~vg~~t~~lf~ 123 (843)
T KOG0906|consen 112 VFVGGTTVSLFG 123 (843)
T ss_pred eeccceEEEeec
Confidence 899998887654
No 156
>KOG1329|consensus
Probab=60.09 E-value=52 Score=32.24 Aligned_cols=85 Identities=19% Similarity=0.229 Sum_probs=59.6
Q ss_pred CcEEEEEEECCCCceEEeeeecCC-CCCeEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEE
Q psy17645 62 DPYVKVYLLPDKKKKFETKVHRKT-LNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140 (207)
Q Consensus 62 dpyv~v~l~~~~~~~~~T~~~~~t-~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~ 140 (207)
++|+.+.+ ......+|....+. ..|.|.+.|...+ ......+.+.+-+.+..+....+|.+
T Consensus 139 e~Ylt~~l--~~~~~~~t~~~~~f~e~s~~~f~~~~~~----------------~h~~g~v~~~~~~~~~~G~s~~w~~v 200 (887)
T KOG1329|consen 139 ENYLTVVL--HKARYRRTHVIYEFLENSRWSFSFDIGF----------------AHKAGYVIFRVKGARVPGWSKRWGRV 200 (887)
T ss_pred cchheeee--chhhhhchhhhhcccccchhhhhccccc----------------cccccEEEEeecCCccccceeEEEEe
Confidence 66777766 23334455555544 6789988876542 11345777877777766656789999
Q ss_pred EEeceeeccccccceEEEccccCC
Q psy17645 141 KVALCQIDLAQTIEEWRELQSVEG 164 (207)
Q Consensus 141 ~v~L~~l~~~~~~~~w~~L~~~~~ 164 (207)
..+...+..+....+|+++....+
T Consensus 201 ~~s~~~~~~~~~~~~~~~Il~~d~ 224 (887)
T KOG1329|consen 201 KISFLQYCSGHRIGGWFPILDNDG 224 (887)
T ss_pred ccchhhhhccccccceeeeeccCC
Confidence 999988888888889999887555
No 157
>PF14924 DUF4497: Protein of unknown function (DUF4497)
Probab=52.57 E-value=34 Score=24.46 Aligned_cols=65 Identities=17% Similarity=0.125 Sum_probs=37.7
Q ss_pred CCceEEEEEEecCC---CCCCceeEEEEEeceeeccc--------------cccceEEEccccCCCCceEEeecCCCCce
Q psy17645 117 MNKTLVFAIFDFDR---FSKHDQIGEVKVALCQIDLA--------------QTIEEWRELQSVEGEGGQVYYLDGPKGNL 179 (207)
Q Consensus 117 ~~~~l~i~v~d~~~---~~~~~~lG~~~v~L~~l~~~--------------~~~~~w~~L~~~~~~~~~~~~l~~~~g~i 179 (207)
....|.+.++.... .....++|.+.+++.+.... .....-|.|.+..+ ...|+|
T Consensus 27 ~~~pl~i~~~~~~~~~~~~~~~liG~~~i~l~~~~~~i~~~~~~~~~~p~s~~~k~~f~L~~~~~---------~~~G~I 97 (112)
T PF14924_consen 27 SSFPLYIVVKKVPPGFPTPPPMLIGSCPISLAEAFNRILKDSAECNGQPSSKTIKGTFPLFDENG---------NPVGEI 97 (112)
T ss_pred hCCceEEEEEecCCCCCCCccceeeEEEecHHHHHHHHHHHHHhhccCCCchhhcceeEeecCCC---------ceeeeE
Confidence 35667776665433 34556899999998875311 12223344443222 245888
Q ss_pred eeeceeeeecc
Q psy17645 180 ATGKKALYLPN 190 (207)
Q Consensus 180 ~~~~~~~~~~~ 190 (207)
.+.+++..+-.
T Consensus 98 ~l~iRLsclG~ 108 (112)
T PF14924_consen 98 SLYIRLSCLGS 108 (112)
T ss_pred EEEEEEecCcc
Confidence 88788776543
No 158
>PHA03351 tegument protein UL16; Provisional
Probab=36.64 E-value=1.7e+02 Score=22.79 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=23.5
Q ss_pred CcCCCceEEEEEEecCCCCCCceeEEEEEe
Q psy17645 114 ADAMNKTLVFAIFDFDRFSKHDQIGEVKVA 143 (207)
Q Consensus 114 ~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~ 143 (207)
+.+...-++++++-+...+.|+.+|.+...
T Consensus 55 etwt~~gicisicyy~nvsddeiigvaf~~ 84 (235)
T PHA03351 55 ETWTLHGICISICYYENVSDDEIIGVAFTS 84 (235)
T ss_pred CceEEeeeEEEEEEecccCccceEEEEEEe
Confidence 334456788889988888999999988775
No 159
>PF10409 PTEN_C2: C2 domain of PTEN tumour-suppressor protein; InterPro: IPR014020 Tensins constitute an eukaryotic family of lipid phosphatases that are defined by the presence of two adjacent domains: a lipid phosphatase domain and a C2-like domain. The tensin-type C2 domain has a structure similar to the classical C2 domain (see IPR000008 from INTERPRO) that mediates the Ca2+-dependent membrane recruitment of several signalling proteins. However the tensin-type C2 domain lacks two of the three conserved loops that bind Ca2+, and in this respect it is similar to the C2 domains of PKC-type [, ]. The tensin-type C2 domain can bind phopholipid membranes in a Ca2+ independent manner []. In the tumour suppressor protein PTEN, the best characterised member of the family, the lipid phosphatase domain was shown to specifically dephosphorylate the D3 position of the inositol ring of the lipid second messenger, phosphatydilinositol-3-4-5-triphosphate (PIP3). The lipid phosphatase domain contains the signature motif HCXXGXXR present in the active sites of protein tyrosine phosphatases (PTPs) and dual specificity phosphatases (DSPs). Furthermore, two invariant lysines are found only in the tensin-type phosphatase motif (HCKXGKXR) and are suspected to interact with the phosphate group at position D1 and D5 of the inositol ring [, ]. The C2 domain is found at the C terminus of the tumour suppressor protein PTEN (phosphatidyl-inositol triphosphate phosphatase). This domain may include a CBR3 loop, indicating a central role in membrane binding. This domain associates across an extensive interface with the N-terminal phosphatase domain DSPc suggesting that the C2 domain productively positions the catalytic part of the protein on the membrane. The crystal structure of the PTEN tumour suppressor has been solved []. The lipid phosphatase domain has a structure similar to the dual specificity phosphatase (see IPR000387 from INTERPRO). However, PTEN has a larger active site pocket that could be important to accommodate PI(3,4,5)P3. Proteins known to contain a phosphatase and a C2 tensin-type domain are listed below: Tensin, a focal-adhesion molecule that binds to actin filaments. It may be involved in cell migration, cartilage development and in linking signal transduction pathways to the cytoskeleton. Phosphatase and tensin homologue deleted on chromosome 10 protein (PTEN). It antagonizes PI 3-kinase signalling by dephosphorylating the 3-position of the inositol ring of PI(3,4,5)P3 and thus inactivates downstream signalling. It plays major roles both during development and in the adult to control cell size, growth, and survival. Auxilin. It binds clathrin heavy chain and promotes its assembly into regular cages. Cyclin G-associated kinase or auxilin-2. It is a potential regulator of clathrin-mediated membrane trafficking. ; GO: 0005515 protein binding; PDB: 3N0A_A 1D5R_A 3V0D_B 3V0H_B 3V0G_A 3V0F_B 3V0J_A 3V0I_A 3AWE_B 3AWG_C ....
Probab=34.21 E-value=1.8e+02 Score=21.01 Aligned_cols=93 Identities=15% Similarity=0.286 Sum_probs=46.5
Q ss_pred EEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCCeEecEEEEeeecccccceeccCcccCcCCCce
Q psy17645 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKT 120 (207)
Q Consensus 41 ~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 120 (207)
.|.++-+.-..++..+..+.+.||+.+.- .....+.+........-.=...+.+.+ +..-.-...
T Consensus 5 ~l~L~~I~l~~iP~f~~~~gc~p~i~I~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~l~GD 69 (134)
T PF10409_consen 5 PLFLKSIILHGIPNFNSGGGCRPYIEIYN--GGKKVFSTSKSYEDPKSYEQDSVIIEL-------------PKNLPLRGD 69 (134)
T ss_dssp EEEEEEEEEES-TTSTTSSCCTEEEEEEE--TTEEEEETCCTCCCCCEEETTCEEEEE-------------EEEEEEESE
T ss_pred eEEEEEEEEECCCccCCCCCEEEEEEEEC--CCccEEEeccceeccccccceeEEEEe-------------CCCCeEeCC
Confidence 34444444566665555678899999875 222232222222111111112233331 101112358
Q ss_pred EEEEEEecCC-CCCCceeEEEEEeceeec
Q psy17645 121 LVFAIFDFDR-FSKHDQIGEVKVALCQID 148 (207)
Q Consensus 121 l~i~v~d~~~-~~~~~~lG~~~v~L~~l~ 148 (207)
+.|.+++... ...++.+.++++.-.-+.
T Consensus 70 V~i~~~~~~~~~~~~~~~f~~~FnT~Fi~ 98 (134)
T PF10409_consen 70 VLIKFYHKRSSSMSKEKMFRFWFNTGFIE 98 (134)
T ss_dssp EEEEEEECETTECCCEEEEEEEEEGGGSB
T ss_pred EEEEEEeCCCcccccCeEEEEEEeeeeee
Confidence 8899998763 344567888777755443
No 160
>cd05137 RasGAP_CLA2_BUD2 CLA2/BUD2 functions as a GTPase-activating protein (GAP) for BUD1/RSR1 and is necessary for proper bud-site selection in yeast. BUD2 has sequence similarity to the catalytic domain of RasGAPs, and stimulates the hydrolysis of BUD1-GTP to BUD1-GDP. Elimination of Bud2p activity by mutation causes a random budding pattern with no growth defect. Overproduction of Bud2p also alters the budding pattern.
Probab=31.68 E-value=43 Score=29.77 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=24.9
Q ss_pred eeEEEEEecee-eccccccceEEEccccCCC
Q psy17645 136 QIGEVKVALCQ-IDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 136 ~lG~~~v~L~~-l~~~~~~~~w~~L~~~~~~ 165 (207)
.+|.+.+++.. +..+...+.|+++.+....
T Consensus 1 ~~G~v~i~~~~~~~~~~~~e~w~~i~~~~~~ 31 (395)
T cd05137 1 LVGRIDITLEMILDRGLDKETWLPIFDVDNK 31 (395)
T ss_pred CeeEEEeehhhhccCCCCceeeeccccCCCC
Confidence 48999999999 6677888999999886554
No 161
>PF07162 B9-C2: Ciliary basal body-associated, B9 protein; InterPro: IPR010796 Proteins in this entry include the MSK1 protein (Q9NXB0 from SWISSPROT) and other known or predicted flagellar basal body proteome components [] or cilia-containing species. Although the function is unknown, a cilia-specific role has been suggested for the poorly characterised B9 domain [, , ]. Mutations in MSK1 have been shown to cause Meckel syndrome type 1, a severe foetal development disorder that has been reported in most populations.
Probab=26.52 E-value=3e+02 Score=21.07 Aligned_cols=95 Identities=17% Similarity=0.265 Sum_probs=53.1
Q ss_pred EEEEeeCCCCCCCCCCCCcEEEEEEEC-C------CCc-eEEeeeecC-----CCCCeEecEEEEeeecccccceeccCc
Q psy17645 45 TVIQAEDLPALDMGGTSDPYVKVYLLP-D------KKK-KFETKVHRK-----TLNPVFNETFVFKVSFLNRSEVFEQGV 111 (207)
Q Consensus 45 ~I~~a~nL~~~~~~g~~dpyv~v~l~~-~------~~~-~~~T~~~~~-----t~~P~w~e~~~f~~~~~~~~~~~~~~~ 111 (207)
.|..|.+.. ..+.|++..+.- . +.. ...|.+... ...-.|+.-|.+.+
T Consensus 7 ~I~~a~~f~------~~~l~~~y~~~~g~~W~~~~g~~~~G~Tq~~~~~~~~~~~~~~f~~P~d~~~------------- 67 (168)
T PF07162_consen 7 EIESAEGFE------EDNLYCRYQLVHGPDWKLISGLSLEGQTQISKSSSYGNDDVAVFNHPFDLHF------------- 67 (168)
T ss_pred EEEEEECCC------CCCEEEEEEEEeCCCeEECCCCcceEEcceeecCcccCCCceEEeccEEEEE-------------
Confidence 456666432 346788877631 1 112 344444332 33467887666653
Q ss_pred ccCcCC-CceEEEEEEecCCCCCCceeEEEEEeceee--ccccccceEEE
Q psy17645 112 PYADAM-NKTLVFAIFDFDRFSKHDQIGEVKVALCQI--DLAQTIEEWRE 158 (207)
Q Consensus 112 ~~~~~~-~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l--~~~~~~~~w~~ 158 (207)
....+. -..|.++||..|..+++...|-..+.|-.- ........|.+
T Consensus 68 ~~~~~~gwP~L~l~V~~~D~~gr~~~~GYG~~~lP~~pG~h~~~v~~wrP 117 (168)
T PF07162_consen 68 KSTNPQGWPQLVLQVYSLDSWGRDRVEGYGFCHLPTQPGRHEVEVPTWRP 117 (168)
T ss_pred EeCCCCCCceEEEEEEEEcccCCeEEeEEeEEEeCCCCceEEEEEEEEee
Confidence 112222 268999999999999999998755554322 11123345666
No 162
>KOG0904|consensus
Probab=25.92 E-value=2.7e+02 Score=27.75 Aligned_cols=75 Identities=17% Similarity=0.132 Sum_probs=43.0
Q ss_pred CCEEEEEEEEeeCCCCCCCCCCCCcEEEEEE--ECCCC---ceEEeeeecCCCCCeEecEEEEeeecccccceeccCccc
Q psy17645 39 ANSLSVTVIQAEDLPALDMGGTSDPYVKVYL--LPDKK---KKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPY 113 (207)
Q Consensus 39 ~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l--~~~~~---~~~~T~~~~~t~~P~w~e~~~f~~~~~~~~~~~~~~~~~ 113 (207)
+..++|++..+.++.. ....+.+|.+.. ..... +...|.-+.....|.||+...|++. -.
T Consensus 342 ~~~frI~l~~is~~n~---~~t~~~kV~V~~~lyhG~e~Lc~~~sTs~v~~~~~~~Wn~~leFDI~------------i~ 406 (1076)
T KOG0904|consen 342 DRPFRIKLVGISKVNL---PETVDLKVFVEAGLYHGTEVLCKTRSTSEVPGCSFPLWNEWLEFDIY------------IK 406 (1076)
T ss_pred CCceEEEEeeccccCC---CcccceEEEEEEEEEECCeehhcccccCCCCCccchhccceeEeeee------------cC
Confidence 4457777777665433 234455555543 22121 1244555555778999999999862 11
Q ss_pred CcCCCceEEEEEEec
Q psy17645 114 ADAMNKTLVFAIFDF 128 (207)
Q Consensus 114 ~~~~~~~l~i~v~d~ 128 (207)
+-+....+++.|+..
T Consensus 407 DLPr~ArLc~~i~~v 421 (1076)
T KOG0904|consen 407 DLPRMARLCLAIYAV 421 (1076)
T ss_pred CCChhhhheeeeeEe
Confidence 222456777777754
No 163
>PTZ00447 apical membrane antigen 1-like protein; Provisional
Probab=24.77 E-value=4.9e+02 Score=23.04 Aligned_cols=114 Identities=18% Similarity=0.225 Sum_probs=66.3
Q ss_pred CCceeEEEEEC-----cCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCC--eEecEEEEeee
Q psy17645 27 FKPEQTLEYDF-----NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP--VFNETFVFKVS 99 (207)
Q Consensus 27 ~~~~~~l~y~~-----~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P--~w~e~~~f~~~ 99 (207)
+.|--+++|-. ....|.|.|-+-.++ ......|+.+.. +....+|..+..+..- .-++.....+
T Consensus 40 ~EPiASMyYYtGIHnHRkF~LLVeI~EI~~i-----~k~khiyIef~~---Gr~d~TT~~IpTsKK~RI~IqqRV~IkI- 110 (508)
T PTZ00447 40 FEPFASMYYFSGLHNYRTFYLLVKINEIFNI-----NKYKHIYIIFST---DKYDFTTDEIPTNKKNRIHIDQRVDIKI- 110 (508)
T ss_pred cchhhhhhhhhcccccceeeEEEEehhhhcc-----ccceeEEEEEEc---CceEEEccccccCcCceEEEeeeeeeee-
Confidence 44444555543 233566777665443 234677888876 3345555444332222 2234444443
Q ss_pred cccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEecee--eccccccceEEEccccCCC
Q psy17645 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQ--IDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~--l~~~~~~~~w~~L~~~~~~ 165 (207)
.....+|.+.++-... ....-+|.+.+.+.. +...-+.+.||-+...+..
T Consensus 111 ---------------RQcDnTLkI~lfKKkL-vkk~hIgdI~InIn~dIIdk~FPKnkWy~c~kDGq~ 162 (508)
T PTZ00447 111 ---------------RQCDETLRVDLFTTKL-TKKVHIGQIKIDINASVISKSFPKNEWFVCFKDGQE 162 (508)
T ss_pred ---------------eecCceEEEEEEeccc-cceeEEEEEEecccHHHHhccCCccceEEEecCCce
Confidence 1245788899987775 445789998888764 4445678899999654443
No 164
>PF01060 DUF290: Transthyretin-like family; InterPro: IPR001534 This new apparently nematode-specific protein family has been called family 2 []. The proteins show weak similarity to transthyretin (formerly called prealbumin) which transports thyroid hormones. The specific function of this protein is unknown.; GO: 0005615 extracellular space
Probab=22.03 E-value=1.6e+02 Score=19.53 Aligned_cols=25 Identities=24% Similarity=0.412 Sum_probs=19.9
Q ss_pred ceEEEEEEecCCCCCCceeEEEEEe
Q psy17645 119 KTLVFAIFDFDRFSKHDQIGEVKVA 143 (207)
Q Consensus 119 ~~l~i~v~d~~~~~~~~~lG~~~v~ 143 (207)
....|.+|+.+.+..|++++.+..+
T Consensus 12 ~~~~V~L~e~d~~~~Ddll~~~~Td 36 (80)
T PF01060_consen 12 KNVKVKLWEDDYFDPDDLLDETKTD 36 (80)
T ss_pred CCCEEEEEECCCCCCCceeEEEEEC
Confidence 4566999999987888899886653
No 165
>KOG3508|consensus
Probab=21.14 E-value=45 Score=32.83 Aligned_cols=128 Identities=22% Similarity=0.222 Sum_probs=68.7
Q ss_pred CcceeEeeeecccccCCCCCceeEEEEECcCCEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCceEEeeeecCCCCC
Q psy17645 9 KKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNP 88 (207)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~l~y~~~~~~L~V~I~~a~nL~~~~~~g~~dpyv~v~l~~~~~~~~~T~~~~~t~~P 88 (207)
.|.||+.+++....+.+. --..+.+..-|.++..++.... .++...+ +.--..+|..+-.+.+-
T Consensus 80 ~~~~~~~~lrr~i~e~r~---------r~~e~s~~~wi~e~~~lp~~~~-----l~~~~~~--d~~l~~r~~s~~~~s~v 143 (932)
T KOG3508|consen 80 ERKWYMENLRRTIAESRL---------RRAENSGSYWIREAKRLPGKGK-----LSCLLQL--DGTLYARTISKCGTSNV 143 (932)
T ss_pred hhhhhhcchhhhcccchh---------hccCCceeEEeeccCcCCCcce-----eehhhcc--chhHHhhhhhhcccchh
Confidence 467888888877766551 1123444555667766665431 1111111 11123344444457788
Q ss_pred eEecEEEEeeecccccceeccCcccCcCCCceEEEEEEecCCCCCCceeEEEEEeceeeccccccceEEEccccCCC
Q psy17645 89 VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGE 165 (207)
Q Consensus 89 ~w~e~~~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~v~d~~~~~~~~~lG~~~v~L~~l~~~~~~~~w~~L~~~~~~ 165 (207)
.|.|.|.|.. +|+..-........+-.+.....++.+|-+. +..-+...+..++|+.+......
T Consensus 144 l~gE~~~f~~------------lPpl~~~~~~~~~~i~~~~k~~~n~~l~~~~-~~~f~~~~~~~d~w~~v~t~~~~ 207 (932)
T KOG3508|consen 144 LWGENFLFPV------------LPPLPVVDVLRVRAILPKKKKPTNDEIGFVK-GDEFPVHRDLEDGWYWVTTSRTD 207 (932)
T ss_pred cccccccccc------------CCccchhhhhhhhhhhhhhccCccccccccc-chhheecccccceeEEeeccccc
Confidence 9999999974 5543322222223333333334456777766 43444445677899998764333
Done!