RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17645
(207 letters)
>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 152
Score = 181 bits (462), Expect = 3e-59
Identities = 84/132 (63%), Positives = 96/132 (72%), Gaps = 13/132 (9%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
+L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFN
Sbjct: 34 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 93
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
E F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D
Sbjct: 94 EQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 140
Query: 152 TIEEWRELQSVE 163
EEWR+LQS E
Sbjct: 141 VTEEWRDLQSAE 152
>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle,
glycoprotein, lipoprotein, membrane, metal- binding,
palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB:
3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*
Length = 143
Score = 181 bits (460), Expect = 5e-59
Identities = 83/130 (63%), Positives = 95/130 (73%), Gaps = 13/130 (10%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
+L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFN
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
E F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D
Sbjct: 86 EQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 132
Query: 152 TIEEWRELQS 161
EEWR+LQS
Sbjct: 133 VTEEWRDLQS 142
>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 141
Score = 180 bits (458), Expect = 9e-59
Identities = 59/136 (43%), Positives = 87/136 (63%), Gaps = 12/136 (8%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
++ Y+F ++L+V +++A++LPA D GTSDP+VK+YLLPDKK K ETKV RK LNP +N
Sbjct: 18 SVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWN 77
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
ETF+F+ G PY + + L + D+DRFS++D IGEV + L ++DL Q
Sbjct: 78 ETFLFE------------GFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQ 125
Query: 152 TIEEWRELQSVEGEGG 167
W++L+ G
Sbjct: 126 MQTFWKDLKPSGPSSG 141
>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 147
Score = 171 bits (434), Expect = 5e-55
Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 20/136 (14%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPAL-------DMGGTSDPYVKVYLLPDKKKKFETKVHRK 84
+ +YD N L+V VI+A DLP S+PYVK+ LLPD+K +T V RK
Sbjct: 18 STQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRK 77
Query: 85 TLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVAL 144
T PVF E + F+ +P+ +A +TL+ + DFD+FS+H IG+V V L
Sbjct: 78 TQKPVFEERYTFE-------------IPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPL 124
Query: 145 CQIDLAQTIEEWRELQ 160
C++DL + W+ L
Sbjct: 125 CEVDLVKGGHWWKALI 140
>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding,
synaptic EXOC metal-binding, protein transport, synapse,
transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A
Length = 142
Score = 170 bits (433), Expect = 7e-55
Identities = 45/133 (33%), Positives = 69/133 (51%), Gaps = 14/133 (10%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
+L YD + ++L T+I+A+ L +D G +DPYVK++LLP K K TK R T NPV
Sbjct: 21 SLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPV 80
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NET + G+ D KTL ++ D D+F ++ IGE + +L ++
Sbjct: 81 WNETLQYH------------GITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKA 128
Query: 150 AQTIEEWRELQSV 162
Q L+ V
Sbjct: 129 NQRKNFNICLERV 141
>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
protein binding; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 138
Score = 170 bits (432), Expect = 7e-55
Identities = 55/132 (41%), Positives = 77/132 (58%), Gaps = 14/132 (10%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
+LEY+F + V + +A LPA+D TSDPY+K+ +LP+KK K +T+V RKTL+P F
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
+ETF F G+PY L F I FDRFS+ D IGEV + L I+L+
Sbjct: 74 DETFTF------------YGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121
Query: 151 Q-TIEEWRELQS 161
+ + RE+ S
Sbjct: 122 EGKMLMNREIIS 133
>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter
release, riken structural genomics/proteomics
initiative, RSGI, structural genomics; NMR {Homo
sapiens} SCOP: b.7.1.2
Length = 138
Score = 169 bits (429), Expect = 2e-54
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPVF 90
L+YD L VT ++A + G D YV+ + + +T + ++ L+ +
Sbjct: 18 CLDYDCQKAELFVTRLEA---VTSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTW 74
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
E V + + TL + DRFS+H GE+++ L +
Sbjct: 75 EEGLVLPL-------------AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121
Query: 151 QTIEEWRELQSVEGEGG 167
+W EL++ G
Sbjct: 122 LGAAQWGELKTSGPSSG 138
>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid
binding, alternative splicing, cell membrane,
cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}
Length = 148
Score = 168 bits (427), Expect = 6e-54
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 16/132 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNP 88
+L+Y+ SL V V + L D S+PYVK YLLPDK + K +T + R T+NP
Sbjct: 15 SLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNP 74
Query: 89 VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148
+++ET +++ P + +TL F+++ RF ++ +GE ++ +
Sbjct: 75 LYDETLRYEI-------------PESLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWK 121
Query: 149 LAQTIEEWRELQ 160
L + ++ L
Sbjct: 122 LDKKLDHCLPLH 133
>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction,
cytoplasmic vesicle, glycoprotein, lipoprotein,
membrane, metal-binding palmitate; 2.70A {Homo sapiens}
SCOP: b.7.1.2
Length = 284
Score = 169 bits (431), Expect = 8e-53
Identities = 85/134 (63%), Positives = 97/134 (72%), Gaps = 13/134 (9%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
+L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFN
Sbjct: 11 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 70
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
E F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D
Sbjct: 71 EQFTFK-------------VPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 117
Query: 152 TIEEWRELQSVEGE 165
EEWR+LQS E E
Sbjct: 118 VTEEWRDLQSAEKE 131
Score = 119 bits (301), Expect = 2e-33
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 17/130 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
+L Y A L+V +++A++L +D+GG SDPYVK++L+ + K KK +T + + TLNP
Sbjct: 142 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 201
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 202 YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 248
Query: 150 AQTIEEWREL 159
W ++
Sbjct: 249 EL--RHWSDM 256
>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus
norvegicus} SCOP: b.7.1.2
Length = 142
Score = 162 bits (413), Expect = 8e-52
Identities = 44/143 (30%), Positives = 67/143 (46%), Gaps = 25/143 (17%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-----------KFETK 80
+ YD +L + ++QA +L D G SDP+VKVYLLP + + K TK
Sbjct: 12 QINYDLG--NLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTK 69
Query: 81 VHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEV 140
+K+LNP +N+T ++K + M KTL ++D+DRFS +D +GEV
Sbjct: 70 YVQKSLNPEWNQTVIYK------------SISMEQLMKKTLEVTVWDYDRFSSNDFLGEV 117
Query: 141 KVALCQIDLAQTIEEWRELQSVE 163
+ L W L+
Sbjct: 118 LIDLSSTSHLDNTPRWYPLKEQT 140
>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha
polypeptide; C2 domain, lipid binding, PI3-kinase,
transferase; 2.30A {Mus musculus}
Length = 134
Score = 161 bits (410), Expect = 2e-51
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 15/131 (11%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVF 90
L + +L + V+ +DL D G +PYVK YLLPD K K +TK+ RKT NP F
Sbjct: 13 LSVSYRNGTLFIMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTF 71
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
NE V+ G + L ++ + ++ +G + + L +L+
Sbjct: 72 NEMLVYS------------GYSKETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLS 119
Query: 151 QTIEEWRELQS 161
+ +W +L +
Sbjct: 120 KETVKWYQLTA 130
>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 142
Score = 161 bits (409), Expect = 2e-51
Identities = 46/137 (33%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
T+ + N L V V +L A G SDPYV++YLLPDK++ + +T V +KTLNPV
Sbjct: 16 TIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPV 74
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ--IGEVKVALCQI 147
F+++F F V + +TL A+ + F D+ +G+V VAL
Sbjct: 75 FDQSFDFS-------------VSLPEVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASE 121
Query: 148 DLAQTIEEWRELQSVEG 164
+LA+ +W +L G
Sbjct: 122 ELAKGWTQWYDLTEDSG 138
>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting
molecule, riken structural genomics/proteomics
initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2
Length = 141
Score = 160 bits (408), Expect = 4e-51
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 17/134 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPV 89
L +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K K TK +KTL P
Sbjct: 13 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 72
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQI 147
+N+TF++ V + + L ++D R + + +GE+ + L
Sbjct: 73 WNQTFIYS------------PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 120
Query: 148 DLAQTIEEWRELQS 161
L W +LQ+
Sbjct: 121 LLDD-EPHWYKLQT 133
>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain,
endocytosis/exocytosis complex; 3.20A {Rattus rattus}
SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A
Length = 296
Score = 164 bits (417), Expect = 1e-50
Identities = 64/143 (44%), Positives = 85/143 (59%), Gaps = 15/143 (10%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
L Y + ++ L V ++QA DLPA D G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FN
Sbjct: 12 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 71
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKV--ALCQIDL 149
ETF F VP A+ + L F+++DFDRFS+HD IG+V + L +
Sbjct: 72 ETFQFS-------------VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 118
Query: 150 AQTIEEWRELQSVEGEGGQVYYL 172
WR++ E + L
Sbjct: 119 PPDRPLWRDILEGGSEKADLGEL 141
Score = 119 bits (300), Expect = 4e-33
Identities = 43/129 (33%), Positives = 62/129 (48%), Gaps = 16/129 (12%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPVF 90
L Y A L+VT+I+A +L A+D+ G SDPYVK L+ + + KK +T + + TLNP +
Sbjct: 145 LCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTY 204
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
NE VF V N L A+ D+D ++ IG +V D
Sbjct: 205 NEALVFD-------------VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAAD-P 250
Query: 151 QTIEEWREL 159
E W E+
Sbjct: 251 HGREHWAEM 259
>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain,
neurotransmitter release, transport protein; 1.41A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 129
Score = 158 bits (401), Expect = 3e-50
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPV 89
L +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K K TK +KTL P
Sbjct: 10 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 69
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQI 147
+N+TF++ V + + L ++D R + + +GE+ + L
Sbjct: 70 WNQTFIYS------------PVHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 117
Query: 148 DLAQTIEEWRELQ 160
L W +LQ
Sbjct: 118 LLDD-EPHWYKLQ 129
>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing,
coiled coil, cytoplasm, phosphorylation, polymorphism,
lipid binding protein; 2.20A {Homo sapiens}
Length = 155
Score = 158 bits (402), Expect = 6e-50
Identities = 29/134 (21%), Positives = 50/134 (37%), Gaps = 17/134 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNP 88
L+YD ++ +IQ +L AL ++V +LP + F T+ +
Sbjct: 35 ALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTL 94
Query: 89 VFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQID 148
VFNE F + Y KTL + DR + +G +++L ++
Sbjct: 95 VFNEVFWVS-------------MSYPALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVC 141
Query: 149 LAQTI-EEWRELQS 161
+ W L S
Sbjct: 142 RSGERSTRWYNLLS 155
>3rdl_A Protein kinase C alpha type; protein kinase PKC, transferase; 1.50A
{Rattus norvegicus} PDB: 3gpe_A 3rdj_A 3twy_A 1dsy_A*
4dnl_A* 2uzp_A*
Length = 137
Score = 155 bits (394), Expect = 5e-49
Identities = 45/140 (32%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVF 90
L+ + L VTV A++L +D G SDPYVK+ L+PD K K +TK R TLNP +
Sbjct: 9 LKAEVTDEKLHVTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQW 68
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
NE+F FK+ ++ L I+D+DR +++D +G + + ++
Sbjct: 69 NESFTFKLK--------------PSDKDRRLSVEIWDWDRTTRNDFMGSLSFGVSELMKM 114
Query: 151 QTIEEWRELQS-VEGEGGQV 169
W +L + EGE V
Sbjct: 115 PA-SGWYKLLNQEEGEYYNV 133
>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding
protein, calcium-binding protein; HET: PSE; 2.70A
{Rattus norvegicus} SCOP: b.7.1.2
Length = 149
Score = 154 bits (390), Expect = 2e-48
Identities = 41/133 (30%), Positives = 69/133 (51%), Gaps = 17/133 (12%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPVF 90
++ + L V V A++L +D G SDPYVK+ L+PD K K +TK + +LNP +
Sbjct: 24 IQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEW 83
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
NETF F+ + +D ++ L I+D+D S++D +G + + ++ A
Sbjct: 84 NETFRFQ-------------LKESD-KDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA 129
Query: 151 QTIEEWRELQSVE 163
+ W +L S E
Sbjct: 130 GV-DGWFKLLSQE 141
>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer,
neurotransmitter release, transport protein; HET: MSE;
1.73A {Rattus norvegicus}
Length = 171
Score = 148 bits (374), Expect = 1e-45
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 20/135 (14%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDM-GGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
+ + L V VI+A L T PYVKVYLL + K +T++ RKTL+P+
Sbjct: 23 IGMEDKKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPL 82
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIF-DFDRFSKHDQIGEVKVALCQID 148
+ ++ VF S K L ++ D+ R +G ++ L ++D
Sbjct: 83 YQQSLVFDESP----------------QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELD 126
Query: 149 LAQTIEEWRELQSVE 163
L+ + W +L
Sbjct: 127 LSSMVIGWYKLFPPS 141
>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet
fold, structural genomics, PSI-2, protein structure
initiative; 2.00A {Homo sapiens}
Length = 153
Score = 144 bits (366), Expect = 1e-44
Identities = 31/139 (22%), Positives = 54/139 (38%), Gaps = 20/139 (14%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
L D L + +I+ + L + GT DPYVK+ L+P+ + +T+ +P
Sbjct: 19 RLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPA 77
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ-IGEVKVALCQI- 147
F+E F F V + K L+ +++ S+ IG + + +
Sbjct: 78 FHEHFFFPVQE--------------EDDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLL 123
Query: 148 DLAQTIEEWRELQSVEGEG 166
+ I W L E G
Sbjct: 124 TPDKEISGWYYLLG-EHLG 141
>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding,
metal-binding, synaptic exocytosis, C2A-C2B linker
fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus}
SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A
Length = 166
Score = 139 bits (352), Expect = 2e-42
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 17/136 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
+L Y L V +I+ L A+D G SDP+VK++L PD K K +T++ +KTLNP
Sbjct: 29 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 88
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
FNE F + + ++D K+L +++D+D +D IG ++ +
Sbjct: 89 FNEEFFYD-------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGE 135
Query: 150 AQTIEEWRELQSVEGE 165
+ W E + +
Sbjct: 136 RL--KHWYECLKNKDK 149
>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation
pathway, structural genomics consortium, SGC, cytoplasm;
1.80A {Homo sapiens} PDB: 2nsq_A
Length = 153
Score = 137 bits (346), Expect = 1e-41
Identities = 37/130 (28%), Positives = 56/130 (43%), Gaps = 19/130 (14%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK---KKFETKVHRKTLNPV 89
LE + N+ + V VI L D+ G SDPYV+V L +TK +K+LNP
Sbjct: 13 LEDEENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPK 72
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NE +F+V L+F +FD +R ++ D +G+V V L +
Sbjct: 73 WNEEILFRV----------------HPQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPT 116
Query: 150 AQTIEEWREL 159
E
Sbjct: 117 ENPRLERPYT 126
>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein
transport; 1.44A {Mus musculus}
Length = 138
Score = 136 bits (344), Expect = 2e-41
Identities = 42/130 (32%), Positives = 74/130 (56%), Gaps = 17/130 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
+L Y+ +ANS+ V +I+A +L A+D+GGTSDPYVKV+L+ K+ K +T ++ LNP+
Sbjct: 8 SLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPI 67
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
FNE+F F +P T++ + D D+ S++D IG++ ++
Sbjct: 68 FNESFAFD-------------IPTEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPG 114
Query: 150 AQTIEEWREL 159
+ W+++
Sbjct: 115 EV--KHWKDM 122
>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis
neurotransmitter release, transmembrane; 1.93A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1w16_A
Length = 153
Score = 134 bits (340), Expect = 1e-40
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
+L Y N+L+V V++A LP D+ G SDPYVKV L KK+ K +T V + T N V
Sbjct: 22 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 81
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
FNE FVF +P ++ F + D +R S+++ IG + +
Sbjct: 82 FNELFVFD-------------IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGS 128
Query: 150 AQTIEEWRELQS 161
W+E+
Sbjct: 129 GG--GHWKEICD 138
>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain,
phosphoprotein, conjugation pathway, signaling
protein-ligase complex; 2.00A {Mus musculus}
Length = 176
Score = 131 bits (330), Expect = 5e-39
Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 19/128 (14%)
Query: 35 YDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP---DKKKKFETKVHRKTLNPVFN 91
++ + + V VI L D+ G SDPYV+V L +TK +K+LNP +N
Sbjct: 3 HNDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWN 62
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
E +F+V ++F +FD +R ++ D +G+V V L +
Sbjct: 63 EEILFRV----------------LPQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTEN 106
Query: 152 TIEEWREL 159
E
Sbjct: 107 PRMERPYT 114
>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding,
endocytosis-EX complex; HET: GOL; 1.04A {Rattus
norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A
1k5w_A 2lha_A*
Length = 159
Score = 130 bits (329), Expect = 6e-39
Identities = 41/130 (31%), Positives = 69/130 (53%), Gaps = 17/130 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
+L Y A L+V +++A++L +D+GG SDPYVK++L+ + K KK +T + + TLNP
Sbjct: 17 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 77 YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 123
Query: 150 AQTIEEWREL 159
W ++
Sbjct: 124 EL--RHWSDM 131
>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy,
cardiomyopathy, membrane fusion, dystrophin, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 140
Score = 128 bits (324), Expect = 2e-38
Identities = 36/131 (27%), Positives = 53/131 (40%), Gaps = 16/131 (12%)
Query: 38 NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFK 97
++ L V V A ++P G DP V V +KKK TK LNPV+NE F
Sbjct: 5 SSGMLRVIVESASNIPKTKFG-KPDPIVSVIFKDEKKK---TKKVDNELNPVWNEILEFD 60
Query: 98 VSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWR 157
+ + +L + DF+ ++ IG VAL + Q+
Sbjct: 61 LR------------GIPLDFSSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPY 108
Query: 158 ELQSVEGEGGQ 168
+L S+ E GQ
Sbjct: 109 KLISLLNEKGQ 119
>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo
sapiens} SCOP: b.7.1.1
Length = 126
Score = 123 bits (311), Expect = 1e-36
Identities = 24/129 (18%), Positives = 49/129 (37%), Gaps = 19/129 (14%)
Query: 38 NANSLSVTVIQAEDL---PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETF 94
+++ +V V++A + DM T DPYV++++ + T+ +NPV+NETF
Sbjct: 1 SSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETF 60
Query: 95 VFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE 154
F + L + D + + + +G + + + + E
Sbjct: 61 EFILD---------------PNQENVLEITLMDAN-YVMDETLGTATFTVSSMKVGEKKE 104
Query: 155 EWRELQSVE 163
V
Sbjct: 105 VPFIFNQVT 113
>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, plant protein; NMR {Arabidopsis thaliana}
SCOP: b.7.1.2
Length = 136
Score = 118 bits (299), Expect = 9e-35
Identities = 30/130 (23%), Positives = 49/130 (37%), Gaps = 19/130 (14%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L V ++ A+ L D DPYV++ +K P +NETF+F VS
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFTVSEG 69
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE-WRELQ 160
L IFD D ++ D +GE + L + + +I +
Sbjct: 70 TT----------------ELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV 113
Query: 161 SVEGEGGQVY 170
E G+++
Sbjct: 114 KDEEYKGEIW 123
>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.7.1.1
Length = 133
Score = 114 bits (287), Expect = 6e-33
Identities = 34/125 (27%), Positives = 52/125 (41%), Gaps = 21/125 (16%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L V V++A DL A D G SDP+ + L D+ + T K LNP +N+ F F +
Sbjct: 15 LQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQ---THTVYKNLNPEWNKVFTFPI--- 68
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161
++ L +FD D D +G+V + L I Q L++
Sbjct: 69 -------------KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ--PNCYVLKN 113
Query: 162 VEGEG 166
+ E
Sbjct: 114 KDLEQ 118
>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane
associate, lipid binding PROT; 1.96A {Homo sapiens} PDB:
2jqz_A
Length = 132
Score = 109 bits (274), Expect = 5e-31
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 22/123 (17%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
+ +TV+ A++L D DP+ K+ + + T + TL+P +N+ + V
Sbjct: 7 IRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCH-STDTVKNTLDPKWNQHYDLYVGK- 64
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQ---IGEVKVALCQI-DLAQTIEEWR 157
++ ++++ + K +G V++ I L T +
Sbjct: 65 ----------------TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTGYQRL 108
Query: 158 ELQ 160
+L
Sbjct: 109 DLC 111
>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL
conjugation pathway, structural genomics consortium,
SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1
Length = 173
Score = 97.3 bits (242), Expect = 7e-26
Identities = 24/144 (16%), Positives = 43/144 (29%), Gaps = 29/144 (20%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L +TVI A+ PYV+V + KK T+ T +P + + V+
Sbjct: 38 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKK---TEKCNNTNSPKWKQPLTVIVT-- 92
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI---DLAQTIEEWRE 158
L F ++ +G + + + + + E
Sbjct: 93 ---------------PVSKLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVT 137
Query: 159 LQSVEGEGGQV------YYLDGPK 176
LQ + LDG +
Sbjct: 138 LQLGGDKEPTETIGDLSICLDGLQ 161
>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein,
metal binding protein; HET: GOL; 1.37A {Rattus
norvegicus} PDB: 3kwt_A*
Length = 148
Score = 94.5 bits (235), Expect = 5e-25
Identities = 31/128 (24%), Positives = 53/128 (41%), Gaps = 16/128 (12%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
+S+TV+ A+ L A D G+SDPYV V + K K TK LNPV+ E F F+
Sbjct: 19 ISITVVCAQGLQAKDKTGSSDPYVTVQV---GKTKKRTKTIYGNLNPVWEENFHFECHNS 75
Query: 102 NRS---EVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRE 158
+ V + + + + + D +G+ + + L+ ++ W
Sbjct: 76 SDRIKVRVLD--------EDDDIKSRVKQRFKRESDDFLGQTIIEV--RTLSGEMDVWYN 125
Query: 159 LQSVEGEG 166
L +
Sbjct: 126 LDKRTDKS 133
>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding,
nucleotide-binding, diacylglycerol binding,
serine/threonine-protein kinase, transferase; 1.75A
{Homo sapiens}
Length = 157
Score = 92.7 bits (230), Expect = 3e-24
Identities = 24/134 (17%), Positives = 42/134 (31%), Gaps = 33/134 (24%)
Query: 41 SLSVTVIQAEDLPALDMGG----------TSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
L V + +A L DPY+ V + D+ + +T +KT P +
Sbjct: 30 YLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSV--DQVRVGQTSTKQKTNKPTY 87
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI--- 147
NE F V+ L A+F + + ++
Sbjct: 88 NEEFCANVTD-----------------GGHLELAVFHETPLGYDHFVANCTLQFQELLRT 130
Query: 148 -DLAQTIEEWRELQ 160
+ T E W +L+
Sbjct: 131 TGASDTFEGWVDLE 144
>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding,
hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1
c.19.1.2 PDB: 1bci_A
Length = 749
Score = 96.5 bits (239), Expect = 2e-23
Identities = 23/118 (19%), Positives = 44/118 (37%), Gaps = 19/118 (16%)
Query: 42 LSVTVIQAEDL---PALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKV 98
+V V++A + DM T DPYV++++ + T+ +NPV+NETF F +
Sbjct: 20 FTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFIL 79
Query: 99 SFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
L + D + + +G + + + + E
Sbjct: 80 ---------------DPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEVP 121
>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY,
phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP:
b.7.1.1
Length = 136
Score = 88.4 bits (219), Expect = 7e-23
Identities = 22/138 (15%), Positives = 48/138 (34%), Gaps = 33/138 (23%)
Query: 41 SLSVTVIQAEDLPALDM-----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV 89
L + + +A L DPY+ + + D + +T +KT +P
Sbjct: 7 LLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNV--DDSRIGQTATKQKTNSPA 64
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI-- 147
+++ FV V + A+F D + + ++
Sbjct: 65 WHDEFVTDVCNGR-----------------KIELAVFHDAPIGYDDFVANCTIQFEELLQ 107
Query: 148 DLAQTIEEWRELQSVEGE 165
+ ++ E+W +L+ EG+
Sbjct: 108 NGSRHFEDWIDLE-PEGK 124
>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane,
phosphoprotein, SH3-binding, signaling protein; 3.00A
{Rattus norvegicus}
Length = 483
Score = 66.6 bits (161), Expect = 4e-13
Identities = 28/168 (16%), Positives = 45/168 (26%), Gaps = 22/168 (13%)
Query: 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTL---NPVFNETFVF 96
N L + +I+A +LP Y ++ L D T ++ + E F F
Sbjct: 11 NVLKLWIIEARELPP-----KKRYYCELCL--DDMLYARTTSKPRSASGDTVFWGEHFEF 63
Query: 97 KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
+P A+ L + K +G V V + + E+W
Sbjct: 64 NN------------LPAVRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQW 111
Query: 157 RELQSVEGEGGQVYYLDGPKGNLATGKKALYLPNVGVKNKHNTKTITI 204
+ G GG G G G
Sbjct: 112 YPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS 159
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A
{Mus musculus}
Length = 540
Score = 64.5 bits (156), Expect = 1e-12
Identities = 26/130 (20%), Positives = 43/130 (33%), Gaps = 29/130 (22%)
Query: 43 SVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLN 102
V+ +AE L +D Y+KV+ ++F T V NP + + F+ L+
Sbjct: 397 VVSNFRAEHLWGDYTT-ATDAYLKVFF---GGQEFRTGVVWNNNNPRWTDKMDFENVLLS 452
Query: 103 RSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL-AQTIEEWRELQS 161
L ++D D D +G C + E EL
Sbjct: 453 --------------TGGPLRVQVWDADYGWDDDLLGS-----CDRSPHSGFHEVTCELNH 493
Query: 162 VEGEGGQVYY 171
G+V +
Sbjct: 494 -----GRVKF 498
>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter
release, RIM, MUNC13 domains, exocytosis, metal-binding;
1.44A {Rattus norvegicus} SCOP: b.7.1.1
Length = 131
Score = 56.9 bits (137), Expect = 7e-11
Identities = 22/139 (15%), Positives = 47/139 (33%), Gaps = 27/139 (19%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L V V +A+ A + + YV + + K T + + P + + F+F++
Sbjct: 7 LCVGVKKAKFDGAQE---KFNTYVTLKV--QNVKS--TTIAVRGSQPSWEQDFMFEI--- 56
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWREL 159
+ ++ L +++ +G V + L I + + EW L
Sbjct: 57 -------------NRLDLGLTVEVWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTL 102
Query: 160 QS-VEGEGGQVYYLDGPKG 177
S ++ P
Sbjct: 103 DSQAIMADSEICGTKDPTF 121
>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V
hearing, membrane, synapse, transmembrane, membrane
protein; 1.95A {Rattus norvegicus}
Length = 144
Score = 53.1 bits (127), Expect = 2e-09
Identities = 21/108 (19%), Positives = 43/108 (39%), Gaps = 22/108 (20%)
Query: 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPV-FNETFVFKVS 99
+L V + +L G +D KV + + F ++V + F+ETF + V+
Sbjct: 22 ALIVHLKTVSELR-----GRADRIAKVTF---RGQSFYSRVLENCEDVADFDETFRWPVA 73
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
+ N+ L IF++ + + IG ++ L ++
Sbjct: 74 -------------SSIDRNEVLEIQIFNYSKVFSNKLIGTFRMVLQKV 108
>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc
finger, synapto phorbol-ester binding; 1.78A {Rattus
norvegicus} SCOP: b.7.1.1
Length = 167
Score = 53.1 bits (127), Expect = 3e-09
Identities = 21/141 (14%), Positives = 48/141 (34%), Gaps = 27/141 (19%)
Query: 40 NSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVS 99
+ L V V +A+ A + + YV + + + T + + P + + F+F++
Sbjct: 14 SLLCVGVKKAKFDGAQE---KFNTYVTLKV--QNVES--TTIAVRGSQPSWEQDFMFEI- 65
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWR 157
+ ++ L +++ +G V + L I + + EW
Sbjct: 66 ---------------NRLDLGLTVEVWN-KGLIWDTMVGTVWIPLRTIRQSNEEGPGEWL 109
Query: 158 ELQS-VEGEGGQVYYLDGPKG 177
L S ++ P
Sbjct: 110 TLDSQAIMADSEICGTKDPTF 130
>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1;
phosphoric diester hydrolase, hydrolase, lipid
degradation, transducer; HET: I3P; 2.30A {Rattus
norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A
1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A
1qat_A
Length = 624
Score = 51.8 bits (123), Expect = 4e-08
Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 21/141 (14%)
Query: 13 YLLNLKVLLTDLPIFKPEQTLEYD-FNANSLSVTVIQAEDLPALDMGGTS--DPYVKVYL 69
Y+L L F + + L V +I + LP ++ S DP V V +
Sbjct: 469 YVLKPAFLRDPNTTFNSRALTQGPWWRPERLRVRIISGQQLPKVNKNKNSIVDPKVIVEI 528
Query: 70 L---PDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIF 126
D + + NP ++ F F+V+ + + + F +
Sbjct: 529 HGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVPDLA---------------LVRFMVE 573
Query: 127 DFDRFSKHDQIGEVKVALCQI 147
D+D SK+D IG+ + +
Sbjct: 574 DYDSSSKNDFIGQSTIPWNSL 594
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 40.4 bits (93), Expect = 2e-04
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 13 YLLNLKVLLTDLPIFKPEQTLEYD-FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLL- 70
YLL + + F P + D AN+L V VI + L YV+V +
Sbjct: 697 YLLKPEFMRRPDKSFDPFTEVIVDGIVANALRVKVISGQFLS----DRKVGIYVEVDMFG 752
Query: 71 --PDKKKKFETK-VHRKTLNPVFNET-FVFK 97
D ++K+ T+ + NPV++E F F
Sbjct: 753 LPVDTRRKYRTRTSQGNSFNPVWDEEPFDFP 783
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 36.9 bits (84), Expect = 0.004
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 13 YLLNLKVLLTDLPIFKPEQTLEYDF-NANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP 71
YLL + + F P D A +LS+TVI + L + YV+V L
Sbjct: 650 YLLKHEFMRRPDKQFNPFSVDRIDVVVATTLSITVISGQFLS----ERSVRTYVEVELFG 705
Query: 72 -----DKKKKFETKVHRKTLNPVFNET-FVFK 97
++ + + ++NPV+ E FVF+
Sbjct: 706 LPGDPKRRYRTKLSPSTNSINPVWKEEPFVFE 737
>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich,
phosphotyrosine binding, TCR, T-cell, diacylglycerol,
phorbol ester, structural genomics; NMR {Homo sapiens}
Length = 138
Score = 33.5 bits (76), Expect = 0.019
Identities = 10/62 (16%), Positives = 22/62 (35%), Gaps = 7/62 (11%)
Query: 42 LSVTVIQAEDLPALDMGG-TSDPYVKVYLLPDKKKKFETKVH----RKTLNPVFNETFVF 96
L + + + G +PY V + + + E + T+ P ++ TF
Sbjct: 12 LRIGLSNFDCGSCQSCQGEAVNPYCAVLV--KEYVESENGQMYIQKKPTMYPPWDSTFDA 69
Query: 97 KV 98
+
Sbjct: 70 HI 71
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.1 bits (77), Expect = 0.031
Identities = 24/177 (13%), Positives = 47/177 (26%), Gaps = 54/177 (30%)
Query: 6 PYSKKSFYLLNLKVLLTDLPIFKPEQTLE---YDFNANSLSVTVIQAEDLPALDMGGTSD 62
P + + L V I P L +D + + V V + ++
Sbjct: 368 PAEYRKMFD-RLSVFPPSAHI--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVE----KQ 420
Query: 63 PYVKVYLLPD------KKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADA 116
P +P K + E +HR ++ + + + PY D
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVD---------HYNIPKTFDSDDLIPPYLDQ 471
Query: 117 MNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQSVEGEGGQVYYLD 173
+ H L I+ + + +R + +LD
Sbjct: 472 Y-------FYSH--IGHH---------LKNIEHPERMTLFRMV-----------FLD 499
Score = 28.7 bits (63), Expect = 1.5
Identities = 13/107 (12%), Positives = 38/107 (35%), Gaps = 22/107 (20%)
Query: 3 YILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSD 62
+ + L LL+ K E+ ++ F E++ ++
Sbjct: 55 IMSKDAVSGTLRL-FWTLLS-----KQEEMVQ-KF-----------VEEVLRINYKFLMS 96
Query: 63 PYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFLNRSEVFEQ 109
P ++ T+++ + + ++N+ VF ++R + + +
Sbjct: 97 PIKTEQ----RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 31.5 bits (70), Expect = 0.22
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 10/101 (9%)
Query: 13 YLLNLKVLLTDLPIFKPEQTLEYD-FNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLP 71
YLL + + F P D A ++ + +I A+ L YV+V +
Sbjct: 622 YLLKPEFMRKLDKRFDPFTESTVDGVVAGTIEIKIISAQFLS----DKQISSYVEVEMYG 677
Query: 72 ----DKKKKFETK-VHRKTLNPVFNETFVFKVSFLNRSEVF 107
+KKF+TK + ++P ++E +
Sbjct: 678 LPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPDLAV 718
>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein
binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A
Length = 126
Score = 28.9 bits (64), Expect = 0.61
Identities = 8/59 (13%), Positives = 18/59 (30%), Gaps = 2/59 (3%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYL--LPDKKKKFETKVHRKTLNPVFNETFVFKV 98
L + E + P+ V + ++ + T+ P + TF +
Sbjct: 8 LRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHI 66
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.68
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 27/70 (38%)
Query: 6 PYSKKSFYLLNLKVLLTD--LPIFKP---------EQTLEYD-------FNANSLSVTVI 47
P+S++ K+ ++ LP+ P + D FNA + + V
Sbjct: 408 PFSER-------KLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 48 QAEDLPALDM 57
D D+
Sbjct: 461 DTFD--GSDL 468
>1xeb_A Hypothetical protein PA0115; midwest center for structural
genomics, MCSG, structural GEN protein structure
initiative, PSI, APC22065; 2.35A {Pseudomonas
aeruginosa} SCOP: d.108.1.1
Length = 150
Score = 28.2 bits (63), Expect = 1.1
Identities = 8/15 (53%), Positives = 10/15 (66%), Gaps = 2/15 (13%)
Query: 103 RSEVF--EQGVPYAD 115
R+EVF EQ PY +
Sbjct: 25 RTEVFVVEQKCPYQE 39
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha
helices, oxidoreductase; HET: NDP MTX; 1.95A
{Streptococcus pneumoniae}
Length = 190
Score = 27.9 bits (63), Expect = 1.6
Identities = 7/28 (25%), Positives = 14/28 (50%)
Query: 104 SEVFEQGVPYADAMNKTLVFAIFDFDRF 131
++F+ PY D + T + A + D +
Sbjct: 123 KQIFQAFEPYLDEVIVTHIHARVEGDTY 150
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 2.0
Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 15/41 (36%)
Query: 9 KKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQA 49
K++ LK L L ++ + +A +L+ I+A
Sbjct: 19 KQA-----LKKLQASLKLYADD-------SAPALA---IKA 44
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A
{Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A*
1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A
2lf1_A*
Length = 162
Score = 27.5 bits (62), Expect = 2.4
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 105 EVFEQGVPYADAMNKTLVFAIFDFDRF 131
++F D + T + F+ D
Sbjct: 101 QIFTAFKDDVDTLLVTRLAGSFEGDTK 127
>3efa_A Putative acetyltransferase; structural genom 2, protein structure
initiative, midwest center for structu genomics, MCSG;
2.42A {Lactobacillus plantarum WCFS1}
Length = 147
Score = 27.2 bits (61), Expect = 2.4
Identities = 5/15 (33%), Positives = 7/15 (46%), Gaps = 2/15 (13%)
Query: 103 RSEVF--EQGVPYAD 115
R VF E+G+
Sbjct: 22 RQAVFVEERGISADV 36
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A
{Geobacillus stearothermophilus}
Length = 164
Score = 27.5 bits (62), Expect = 2.5
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 104 SEVFEQGVPYADAMNKTLVFAIFDFDRF 131
+E+F +P D + T +FA F D F
Sbjct: 99 AELFRATMPIVDRLYVTKIFASFPGDTF 126
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller,
endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP:
i.23.1.1 PDB: 1xi5_A 3iyv_A
Length = 1630
Score = 28.1 bits (62), Expect = 2.6
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Query: 4 ILPYSKKSFYLLNLKVLLTDLPIFKPEQTLEYDFNANSLSVTVIQAEDLPALDMGGTSD 62
I+ Y+KK Y + LL ++ P+Q ++ A L ++ P D+ D
Sbjct: 501 IVLYAKKVGYTPDWIFLLRNVMRISPDQGQQF---AQMLV-----QDEEPLADITQIVD 551
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon
metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB:
2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X*
3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X*
3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Length = 159
Score = 27.1 bits (61), Expect = 2.6
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 105 EVFEQGVPYADAMNKTLVFAIFDFDRF 131
+FE+ + D M T++ F D F
Sbjct: 97 TLFEEMIDKVDDMYITVIEGKFRGDTF 123
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib
complex; HET: NDP TOP; 1.90A {Coxiella burnetii} PDB:
3tq9_A* 3tqa_A* 3tqb_A*
Length = 178
Score = 27.1 bits (61), Expect = 2.8
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 104 SEVFEQGVPYADAMNKTLVFAIFDFDRF 131
+ +F++ +P AD M T++ F+ D +
Sbjct: 99 ARIFKEALPKADKMILTIINHSFEGDVY 126
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A
{Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A*
3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A*
3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Length = 165
Score = 27.1 bits (61), Expect = 3.5
Identities = 7/27 (25%), Positives = 15/27 (55%)
Query: 105 EVFEQGVPYADAMNKTLVFAIFDFDRF 131
++++ +PY D + T + F+ D F
Sbjct: 103 QIYDLFLPYVDKLYITKIHHAFEGDTF 129
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 27.0 bits (59), Expect = 3.5
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 150 AQTIEEWRELQSVE 163
++I +WRE Q
Sbjct: 84 PESIRKWREEQRKR 97
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold,
adenine nucleotide BIN domain, antibiotic resistance,
methotrexate resistance; HET: MTX NAP; 1.50A
{Escherichia coli} PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A*
1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A*
1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A*
1rd7_A* 1re7_A* ...
Length = 159
Score = 26.7 bits (60), Expect = 3.6
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 104 SEVFEQGVPYADAMNKTLVFAIFDFDRF 131
V+EQ +P A + T + A + D
Sbjct: 97 GRVYEQFLPKAQKLYLTHIDAEVEGDTH 124
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET:
NDP MTX; 1.70A {Moritella profunda} PDB: 3ia5_A 2zza_A*
Length = 162
Score = 26.3 bits (59), Expect = 5.4
Identities = 5/28 (17%), Positives = 13/28 (46%)
Query: 104 SEVFEQGVPYADAMNKTLVFAIFDFDRF 131
+ ++ Q + AD + T + + D +
Sbjct: 99 ATIYNQCLAAADRLYLTHIELTTEGDTW 126
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme;
2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A
2jyb_A
Length = 162
Score = 26.4 bits (59), Expect = 5.4
Identities = 5/27 (18%), Positives = 12/27 (44%)
Query: 105 EVFEQGVPYADAMNKTLVFAIFDFDRF 131
++ P+ D M + V ++ D +
Sbjct: 104 AIYALFQPHLDRMVLSRVPGEYEGDTY 130
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A
{Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Length = 371
Score = 26.7 bits (58), Expect = 6.4
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 107 FEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
+ QG PY + +H G V A QI
Sbjct: 133 YNQGNPYNLLTPVIEKVKPGEQSFVGQHAATGSVATATAQI 173
>2h4o_A YONK protein; PSI, protein structure initiative, northeast
structural GENO consortium, NESG, structural genomi
unknown function; 2.80A {Bacillus subtilis} SCOP:
d.368.1.1
Length = 76
Score = 24.8 bits (53), Expect = 9.2
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 35 YDFNANSLSVTVIQAEDLPALDMGGTSDP 63
+FN ++S+TV + +LP + DP
Sbjct: 40 SEFNGKNVSITVKEENELPVKGVEMAGDP 68
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.391
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,076,594
Number of extensions: 176491
Number of successful extensions: 498
Number of sequences better than 10.0: 1
Number of HSP's gapped: 415
Number of HSP's successfully gapped: 74
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (24.8 bits)