RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17645
(207 letters)
>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 143
Score = 120 bits (301), Expect = 2e-35
Identities = 83/130 (63%), Positives = 95/130 (73%), Gaps = 13/130 (10%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
+L+YDF N L V +IQA +LPALDMGGTSDPYVKV+LLPDKKKKFETKVHRKTLNPVFN
Sbjct: 26 SLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFN 85
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
E F FK VPY++ KTLV A++DFDRFSKHD IGE KV + +D
Sbjct: 86 EQFTFK-------------VPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGH 132
Query: 152 TIEEWRELQS 161
EEWR+LQS
Sbjct: 133 VTEEWRDLQS 142
>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis
protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 125
Score = 112 bits (281), Expect = 1e-32
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK--FETKVHRKTLNPV 89
L +D + L VT++ A+DLP+ + G +PYVK+Y LPD+ K TK +KTL P
Sbjct: 6 KLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPK 65
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKH--DQIGEVKVALCQI 147
+N+TF++ V + + L ++D R + + +GE+ + L
Sbjct: 66 WNQTFIYSP------------VHRREFRERMLEITLWDQARVREEESEFLGEILIELETA 113
Query: 148 DLAQTIEEWRELQ 160
L W +LQ
Sbjct: 114 LLDDE-PHWYKLQ 125
>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId:
9606]}
Length = 138
Score = 110 bits (276), Expect = 9e-32
Identities = 54/132 (40%), Positives = 76/132 (57%), Gaps = 14/132 (10%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALD-MGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
+LEY+F + V + +A LPA+D TSDPY+K+ +LP+KK K +T+V RKTL+P F
Sbjct: 14 SLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAF 73
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
+ETF F +PY L F I FDRFS+ D IGEV + L I+L+
Sbjct: 74 DETFTFYG------------IPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELS 121
Query: 151 Q-TIEEWRELQS 161
+ + RE+ S
Sbjct: 122 EGKMLMNREIIS 133
>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 138
Score = 104 bits (261), Expect = 1e-29
Identities = 42/132 (31%), Positives = 63/132 (47%), Gaps = 17/132 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK--KFETKVHRKTLNPV 89
+L Y N+L+V V++A LP D+ G SDPYVKV L KK+ K +T V + T N V
Sbjct: 7 SLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAV 66
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
FNE FVF +P ++ F + D +R S+++ IG + +
Sbjct: 67 FNELFVFD-------------IPCESLEEISVEFLVLDSERGSRNEVIGRLVLGAT--AE 111
Query: 150 AQTIEEWRELQS 161
W+E+
Sbjct: 112 GSGGGHWKEICD 123
>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 132
Score = 98.6 bits (245), Expect = 3e-27
Identities = 41/137 (29%), Positives = 70/137 (51%), Gaps = 18/137 (13%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKK--FETKVHRKTLNPV 89
++ + L V V A++L +D G SDPYVK+ L+PD K + +TK + +LNP
Sbjct: 7 YIQAHIDREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPE 66
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NETF F++ ++ L I+D+D S++D +G + + ++
Sbjct: 67 WNETFRFQLKE--------------SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQK 112
Query: 150 AQTIEEWRELQSV-EGE 165
A ++ W +L S EGE
Sbjct: 113 AG-VDGWFKLLSQEEGE 128
>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 137
Score = 98.0 bits (243), Expect = 6e-27
Identities = 39/136 (28%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK--KKKFETKVHRKTLNPV 89
+L Y L V +I+ L A+D G SDP+VK++L PD K K +T++ +KTLNP
Sbjct: 7 SLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPE 66
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
FNE F + + ++D K+L +++D+D +D IG ++ +
Sbjct: 67 FNEEFFYD-------------IKHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AK 111
Query: 150 AQTIEEWRELQSVEGE 165
+ ++ W E + +
Sbjct: 112 GERLKHWYECLKNKDK 127
>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens)
[TaxId: 9606]}
Length = 138
Score = 95.8 bits (237), Expect = 4e-26
Identities = 29/137 (21%), Positives = 53/137 (38%), Gaps = 17/137 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKK-KFETKVHRKTLNPVF 90
L+YD L VT ++A + G D YV+ + + +T + ++ L+ +
Sbjct: 18 CLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTW 74
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
E V + + TL + DRFS+H GE+++ L +
Sbjct: 75 EEGLVLPL-------------AEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVP 121
Query: 151 QTIEEWRELQSVEGEGG 167
+W EL++ G
Sbjct: 122 LGAAQWGELKTSGPSSG 138
>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 142
Score = 95.7 bits (237), Expect = 6e-26
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 23/140 (16%)
Query: 33 LEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDK-----------KKKFETKV 81
L+ +++ +L + ++QA +L D G SDP+VKVYLLP + + K TK
Sbjct: 11 LQINYDLGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKY 70
Query: 82 HRKTLNPVFNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVK 141
+K+LNP +N+T ++K + M KTL ++D+DRFS +D +GEV
Sbjct: 71 VQKSLNPEWNQTVIYKS------------ISMEQLMKKTLEVTVWDYDRFSSNDFLGEVL 118
Query: 142 VALCQIDLAQTIEEWRELQS 161
+ L W L+
Sbjct: 119 IDLSSTSHLDNTPRWYPLKE 138
>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 157
Score = 96.0 bits (238), Expect = 6e-26
Identities = 43/146 (29%), Positives = 72/146 (49%), Gaps = 27/146 (18%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKF--ETKVHRKTLNPV 89
+L Y A L+V +++A++L +D+GG SDPYVK++L+ + K+ +T + + TLNP
Sbjct: 17 SLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPY 76
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NE+F F+ VP+ +V + D+D+ K+D IG+V V
Sbjct: 77 YNESFSFE-------------VPFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGA 123
Query: 150 A------------QTIEEWRELQSVE 163
+ I +W LQ E
Sbjct: 124 ELRHWSDMLANPRRPIAQWHTLQVEE 149
>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 130
Score = 94.6 bits (234), Expect = 9e-26
Identities = 62/132 (46%), Positives = 82/132 (62%), Gaps = 15/132 (11%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFN 91
L Y + ++ L V ++QA DLPA D G SDPYVK+YLLPD+KKKF+TKVHRKTLNP+FN
Sbjct: 10 ALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFN 69
Query: 92 ETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQ 151
ETF F VP A+ + L F+++DFDRFS+HD IG+V + Q
Sbjct: 70 ETFQFS-------------VPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQ 116
Query: 152 TIEE--WRELQS 161
+ WR++
Sbjct: 117 PPDRPLWRDILE 128
>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 145
Score = 93.7 bits (232), Expect = 3e-25
Identities = 43/132 (32%), Positives = 64/132 (48%), Gaps = 16/132 (12%)
Query: 32 TLEYDFNANSLSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKK--KKFETKVHRKTLNPV 89
+L Y A L+VT+I+A +L A+D+ G SDPYVK L+ + + KK +T + + TLNP
Sbjct: 12 SLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPT 71
Query: 90 FNETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDL 149
+NE VF V N L A+ D+D ++ IG +V D
Sbjct: 72 YNEALVFD-------------VAPESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADP 118
Query: 150 AQTIEEWRELQS 161
E W E+ +
Sbjct: 119 -HGREHWAEMLA 129
>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 84.4 bits (208), Expect = 7e-22
Identities = 24/127 (18%), Positives = 46/127 (36%), Gaps = 19/127 (14%)
Query: 39 ANSLSVTVIQAEDLP---ALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFV 95
++ +V V++A + DM T DPYV++++ + T+ +NPV+NETF
Sbjct: 2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE 61
Query: 96 FKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155
F L + D + + +G + + + + E
Sbjct: 62 F---------------ILDPNQENVLEITLMDANYV-MDETLGTATFTVSSMKVGEKKEV 105
Query: 156 WRELQSV 162
V
Sbjct: 106 PFIFNQV 112
>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 136
Score = 79.8 bits (196), Expect = 6e-20
Identities = 29/131 (22%), Positives = 49/131 (37%), Gaps = 19/131 (14%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L V ++ A+ L D DPYV++ +K P +NETF+F VS
Sbjct: 12 LEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKS--NVAEGMGTTPEWNETFIFTVSEG 69
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIE-EWRELQ 160
+ IFD D ++ D +GE + L + + +I +
Sbjct: 70 TTELKAK----------------IFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVV 113
Query: 161 SVEGEGGQVYY 171
E G+++
Sbjct: 114 KDEEYKGEIWV 124
>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1
(PLC-D1), C-terminal domain {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 131
Score = 73.6 bits (180), Expect = 1e-17
Identities = 26/129 (20%), Positives = 46/129 (35%), Gaps = 23/129 (17%)
Query: 42 LSVTVIQAEDLPALDM--GGTSDPYVKVYLLP---DKKKKFETKVHRKTLNPVFNETFVF 96
L V +I + LP ++ DP V V + D + + NP ++ F F
Sbjct: 6 LRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEF 65
Query: 97 KVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEW 156
+V+ + F + D+D SK+D IG+ + + +
Sbjct: 66 EVTV---------------PDLALVRFMVEDYDSSSKNDFIGQSTIPWNSL---KQGYRH 107
Query: 157 RELQSVEGE 165
L S G+
Sbjct: 108 VHLLSKNGD 116
>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane
domain-containing protein 2, MCTP2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 126
Score = 69.0 bits (168), Expect = 5e-16
Identities = 31/125 (24%), Positives = 49/125 (39%), Gaps = 21/125 (16%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L V V++A DL A D G SDP+ + + +T K LNP +N+ F F + +
Sbjct: 8 LQVKVLKAADLLAADFSGKSDPFCLLE---LGNDRLQTHTVYKNLNPEWNKVFTFPIKDI 64
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEEWRELQS 161
+ +FD D D +G+V + L I Q L++
Sbjct: 65 HDVLEVT----------------VFDEDGDKPPDFLGKVAIPLLSIRDGQP--NCYVLKN 106
Query: 162 VEGEG 166
+ E
Sbjct: 107 KDLEQ 111
>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 136
Score = 63.4 bits (153), Expect = 9e-14
Identities = 20/132 (15%), Positives = 43/132 (32%), Gaps = 32/132 (24%)
Query: 42 LSVTVIQAEDLPALDM-----------GGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVF 90
L + + +A L DPY+ + D + +T +KT +P +
Sbjct: 8 LKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALN--VDDSRIGQTATKQKTNSPAW 65
Query: 91 NETFVFKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA 150
++ FV V + + A+F D + + ++
Sbjct: 66 HDEFVTDVC-----------------NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQN 108
Query: 151 --QTIEEWRELQ 160
+ E+W +L+
Sbjct: 109 GSRHFEDWIDLE 120
>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human
(Homo sapiens) [TaxId: 9606]}
Length = 133
Score = 61.7 bits (149), Expect = 4e-13
Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 20/106 (18%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L +TVI A+ PYV+V + KK + T +P + + V+
Sbjct: 8 LQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKT---EKCNNTNSPKWKQPLTVIVT-- 62
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQI 147
L F ++ +G + + +
Sbjct: 63 ---------------PVSKLHFRVWSHQTLKSDVLLGTAALDIYET 93
>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 123
Score = 59.0 bits (142), Expect = 3e-12
Identities = 15/122 (12%), Positives = 31/122 (25%), Gaps = 20/122 (16%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPD--KKKKFETKVHRKTLNPVFNETFVFKVS 99
L ++ E S P+ V + + + T+ P + TF +
Sbjct: 5 LRISFNSYELGSLQAEDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIY 64
Query: 100 FLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHD-QIGEVKVALCQIDLAQTIEEWRE 158
+ + + + +G +A E W +
Sbjct: 65 -----------------EGRVIQIVLMRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLD 107
Query: 159 LQ 160
LQ
Sbjct: 108 LQ 109
>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 122
Score = 56.9 bits (137), Expect = 2e-11
Identities = 18/126 (14%), Positives = 39/126 (30%), Gaps = 26/126 (20%)
Query: 41 SLSVTVIQAEDLPALDMGGTSDPYVKVYLL-----PDKKKKFETKVHRKTLNPVFNETFV 95
+LS+TVI + L YV+V L P ++ + + ++NPV+ E
Sbjct: 2 TLSITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPF 57
Query: 96 FKVSFLNRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLAQTIEE 155
+L A+ + + +G + + ++
Sbjct: 58 V-------------FEKILMPELASLRVAVMEEG----NKFLGHRIIPINALNSGYHHLC 100
Query: 156 WRELQS 161
+
Sbjct: 101 LHSESN 106
>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 128
Score = 53.6 bits (128), Expect = 3e-10
Identities = 23/132 (17%), Positives = 45/132 (34%), Gaps = 27/132 (20%)
Query: 42 LSVTVIQAEDLPALDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFVFKVSFL 101
L V V +A+ A + + YV L + K T + P + + F+F+++ L
Sbjct: 4 LCVGVKKAKFDGAQE---KFNTYVT---LKVQNVKSTTIAV-RGSQPSWEQDFMFEINRL 56
Query: 102 NRSEVFEQGVPYADAMNKTLVFAIFDFDRFSKHDQIGEVKVALCQIDLA--QTIEEWREL 159
+ E +++ +G V + L I + + EW L
Sbjct: 57 DLGLTVE----------------VWNKGLI-WDTMVGTVWIPLRTIRQSNEEGPGEWLTL 99
Query: 160 QS-VEGEGGQVY 170
S ++
Sbjct: 100 DSQAIMADSEIC 111
>d1qcsa2 d.31.1.1 (A:86-201) C-terminal domain of NSF-N, NSF-Nc
{Hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 116
Score = 27.1 bits (60), Expect = 0.82
Identities = 11/38 (28%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 26 IFKPEQTLEYDFNANSLSVTV--IQAEDLPALDMGGTS 61
F Q L + FN + V I+A D L S
Sbjct: 44 AFSVGQQLVFSFNDKLFGLLVKDIEAMDPSILKGEPAS 81
>d1ohfa_ b.121.4.8 (A:) Tetraomegavirus capsid protein {Nudaurelia
capensis omega virus [TaxId: 12541]}
Length = 539
Score = 28.0 bits (62), Expect = 0.84
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 4/44 (9%)
Query: 52 LPALDMGGT--SDPYVKVYLLPDKKKKFETKVHRKTLNPVFNET 93
LP L G T ++P ++ L+ D + VH K NPVF T
Sbjct: 366 LPPLTFGQTAPNNPKIEQTLVKDTLGSY--LVHSKMRNPVFQLT 407
>d1cr5a2 d.31.1.1 (A:108-210) C-terminal domain of NSF-N, NSF-Nc
{Baker's yeast (Saccharomyces cerevisiae), sec18p
[TaxId: 4932]}
Length = 103
Score = 25.5 bits (56), Expect = 2.7
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 26 IFKPEQTLEYDFNANSLSVTV--IQAEDLPALDMGGTS 61
IF P Q L +F + + + +QA DL ++
Sbjct: 44 IFSPTQYLIMEFQGHFFDLKIRNVQAIDLGDIEPTSAV 81
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.391
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 747,948
Number of extensions: 33995
Number of successful extensions: 120
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 26
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)