Query psy17648
Match_columns 530
No_of_seqs 287 out of 1490
Neff 9.1
Searched_HMMs 46136
Date Fri Aug 16 19:26:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17648.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17648hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4303|consensus 100.0 4.5E-64 9.7E-69 470.3 14.2 413 117-530 111-524 (524)
2 KOG1304|consensus 100.0 3.5E-57 7.7E-62 451.4 32.4 387 119-520 43-449 (449)
3 PTZ00206 amino acid transporte 100.0 5.1E-51 1.1E-55 427.3 32.5 381 121-521 58-465 (467)
4 KOG1303|consensus 100.0 4.8E-49 1E-53 400.6 29.4 393 119-522 34-436 (437)
5 PLN03074 auxin influx permease 100.0 1.1E-46 2.4E-51 392.5 30.9 393 119-526 42-457 (473)
6 PF01490 Aa_trans: Transmembra 100.0 2.2E-49 4.8E-54 412.7 1.7 388 121-517 1-408 (409)
7 KOG1305|consensus 100.0 3.5E-40 7.6E-45 334.3 24.9 385 119-523 2-408 (411)
8 KOG1287|consensus 100.0 8.1E-36 1.8E-40 300.6 23.0 380 116-514 7-415 (479)
9 COG0814 SdaC Amino acid permea 100.0 6.4E-30 1.4E-34 263.1 32.4 383 118-517 4-412 (415)
10 PRK09664 tryptophan permease T 99.9 5.7E-24 1.2E-28 215.1 30.4 366 119-511 5-402 (415)
11 PRK10483 tryptophan permease; 99.9 7.9E-24 1.7E-28 214.3 30.8 343 119-488 7-373 (414)
12 PF03222 Trp_Tyr_perm: Tryptop 99.9 6.2E-24 1.3E-28 217.3 29.4 343 121-490 1-367 (394)
13 PRK15132 tyrosine transporter 99.9 4.1E-23 8.8E-28 210.2 30.6 361 124-511 4-390 (403)
14 TIGR00837 araaP aromatic amino 99.9 6.1E-24 1.3E-28 219.0 24.4 337 128-488 2-359 (381)
15 COG1113 AnsP Gamma-aminobutyra 99.9 3.3E-23 7.2E-28 206.0 24.4 354 118-487 10-388 (462)
16 PRK13629 threonine/serine tran 99.9 1.5E-19 3.4E-24 182.9 32.5 372 126-515 22-441 (443)
17 PRK10655 potE putrescine trans 99.9 8.9E-19 1.9E-23 183.9 34.4 355 119-488 4-376 (438)
18 PRK15049 L-asparagine permease 99.9 5.7E-19 1.2E-23 187.5 31.9 353 118-487 25-405 (499)
19 PRK10249 phenylalanine transpo 99.9 9.7E-19 2.1E-23 184.2 31.7 352 118-487 18-394 (458)
20 COG0833 LysP Amino acid transp 99.8 2.4E-18 5.1E-23 175.0 32.5 357 118-487 41-427 (541)
21 PRK10746 putative transport pr 99.8 2.2E-18 4.7E-23 181.5 32.6 356 117-488 6-388 (461)
22 TIGR00814 stp serine transport 99.8 3.3E-19 7.2E-24 182.1 24.5 363 126-506 6-396 (397)
23 TIGR00911 2A0308 L-type amino 99.8 1.4E-18 2.9E-23 185.5 29.5 363 117-495 38-424 (501)
24 PRK10435 cadB lysine/cadaverin 99.8 8E-18 1.7E-22 176.3 33.3 352 118-490 2-381 (435)
25 TIGR01773 GABAperm gamma-amino 99.8 5.6E-18 1.2E-22 178.6 31.7 353 116-487 7-387 (452)
26 PRK10644 arginine:agmatin anti 99.8 8.8E-18 1.9E-22 176.7 33.0 358 116-489 3-379 (445)
27 TIGR03810 arg_ornith_anti argi 99.8 4.8E-18 1E-22 179.7 30.8 354 121-488 1-380 (468)
28 TIGR00930 2a30 K-Cl cotranspor 99.8 1.7E-17 3.6E-22 185.9 35.9 354 118-487 73-487 (953)
29 PRK10836 lysine transporter; P 99.8 1.9E-17 4.1E-22 176.0 34.5 353 117-487 11-398 (489)
30 PRK11021 putative transporter; 99.8 2.3E-17 5E-22 171.7 34.4 351 123-489 1-363 (410)
31 PRK11387 S-methylmethionine tr 99.8 8.4E-18 1.8E-22 177.9 31.4 353 118-488 11-392 (471)
32 PRK11049 D-alanine/D-serine/gl 99.8 1.5E-17 3.3E-22 175.8 32.1 355 118-488 17-399 (469)
33 PRK10238 aromatic amino acid t 99.8 1.2E-17 2.7E-22 175.7 30.9 354 118-488 9-386 (456)
34 TIGR00909 2A0306 amino acid tr 99.8 1.6E-17 3.4E-22 174.2 30.8 348 120-486 2-374 (429)
35 TIGR00905 2A0302 transporter, 99.8 7.6E-18 1.6E-22 178.4 28.4 354 119-488 5-384 (473)
36 TIGR00913 2A0310 amino acid pe 99.8 4.6E-17 9.9E-22 172.9 32.6 351 120-487 1-391 (478)
37 TIGR00906 2A0303 cationic amin 99.8 6.3E-17 1.4E-21 173.6 31.4 352 118-487 25-410 (557)
38 PRK11357 frlA putative fructos 99.8 4.7E-17 1E-21 171.2 29.0 350 118-486 5-378 (445)
39 PRK10580 proY putative proline 99.8 1.8E-16 3.8E-21 167.3 32.1 354 117-488 5-385 (457)
40 PRK10197 gamma-aminobutyrate t 99.8 1.2E-16 2.5E-21 167.9 29.4 337 132-487 3-367 (446)
41 TIGR00908 2A0305 ethanolamine 99.8 3.5E-16 7.6E-21 164.5 31.9 350 117-488 3-373 (442)
42 PF13520 AA_permease_2: Amino 99.8 1.5E-15 3.3E-20 159.1 32.0 347 123-486 1-373 (426)
43 KOG1286|consensus 99.7 1.1E-15 2.3E-20 161.1 19.7 360 117-487 26-422 (554)
44 COG0531 PotE Amino acid transp 99.7 4E-14 8.7E-19 150.0 30.0 358 117-488 8-389 (466)
45 TIGR03428 ureacarb_perm permea 99.6 3.3E-13 7.1E-18 143.2 32.6 354 116-483 8-397 (475)
46 TIGR00907 2A0304 amino acid pe 99.6 4.2E-13 9E-18 142.8 31.7 358 117-488 8-409 (482)
47 PRK15238 inner membrane transp 99.6 4.5E-13 9.7E-18 142.8 31.3 351 119-487 5-421 (496)
48 TIGR00910 2A0307_GadC glutamat 99.6 6.8E-13 1.5E-17 141.3 29.2 354 119-492 2-394 (507)
49 TIGR03813 put_Glu_GABA_T putat 99.6 5.3E-12 1.1E-16 134.0 32.3 350 121-486 1-383 (474)
50 TIGR00912 2A0309 spore germina 99.6 1.4E-12 3.1E-17 133.4 25.6 278 122-416 2-297 (359)
51 PF00324 AA_permease: Amino ac 99.5 7.3E-14 1.6E-18 148.4 10.7 342 131-488 5-392 (478)
52 KOG1289|consensus 99.3 1.9E-09 4.2E-14 110.3 27.2 359 116-488 43-444 (550)
53 PF03845 Spore_permease: Spore 99.1 1.2E-08 2.6E-13 102.6 23.5 275 122-416 1-293 (320)
54 KOG3832|consensus 99.0 5.5E-09 1.2E-13 92.8 13.3 215 123-339 12-303 (319)
55 TIGR00796 livcs branched-chain 99.0 8.3E-07 1.8E-11 90.1 29.5 332 131-506 3-374 (378)
56 COG3949 Uncharacterized membra 98.7 7.6E-06 1.6E-10 79.1 23.7 134 127-274 7-144 (349)
57 COG1457 CodB Purine-cytosine p 98.7 8.3E-05 1.8E-09 76.3 31.2 269 180-479 75-353 (442)
58 PRK09442 panF sodium/panthothe 98.7 7.4E-05 1.6E-09 79.6 32.2 152 120-283 40-196 (483)
59 TIGR02119 panF sodium/pantothe 98.6 7E-05 1.5E-09 79.5 31.1 154 119-284 38-196 (471)
60 PF00474 SSF: Sodium:solute sy 98.6 1.9E-05 4E-10 82.3 24.5 330 120-464 5-372 (406)
61 TIGR00813 sss transporter, SSS 98.5 8.5E-05 1.8E-09 77.4 28.2 150 120-281 2-152 (407)
62 TIGR00800 ncs1 NCS1 nucleoside 98.5 3E-05 6.4E-10 81.6 24.9 222 193-415 77-327 (442)
63 PRK12488 acetate permease; Pro 98.5 0.00023 5E-09 76.8 31.8 151 120-283 66-218 (549)
64 TIGR02358 thia_cytX probable h 98.4 0.0006 1.3E-08 70.3 29.4 215 193-415 59-276 (386)
65 TIGR02711 symport_actP cation/ 98.3 0.0019 4.1E-08 69.8 32.9 149 120-281 66-216 (549)
66 PRK11017 codB cytosine permeas 98.3 0.00087 1.9E-08 69.6 28.9 173 193-370 72-245 (404)
67 KOG2082|consensus 98.3 0.00014 3E-09 76.9 22.1 176 331-520 432-634 (1075)
68 KOG1288|consensus 98.3 0.00018 3.9E-09 75.4 21.9 155 309-469 294-454 (945)
69 PRK09395 actP acetate permease 98.2 0.0046 1E-07 66.9 33.1 149 120-281 68-218 (551)
70 PRK11375 allantoin permease; P 98.2 0.003 6.5E-08 67.0 30.6 220 193-415 90-341 (484)
71 TIGR02121 Na_Pro_sym sodium/pr 98.2 0.0056 1.2E-07 65.3 32.2 154 120-281 35-192 (487)
72 TIGR03648 Na_symport_lg probab 98.1 0.0054 1.2E-07 66.4 31.2 148 120-279 31-179 (552)
73 PRK15419 proline:sodium sympor 98.1 0.0067 1.4E-07 65.0 31.5 153 120-281 39-196 (502)
74 COG0591 PutP Na+/proline sympo 98.0 0.019 4E-07 61.3 30.6 147 120-274 37-184 (493)
75 PRK10484 putative transporter; 97.9 0.033 7.2E-07 60.0 32.3 153 119-282 36-198 (523)
76 PRK00701 manganese transport p 97.9 0.04 8.6E-07 57.7 31.2 86 178-273 86-173 (439)
77 TIGR00835 agcS amino acid carr 97.8 0.0096 2.1E-07 61.4 24.9 142 121-276 45-196 (425)
78 COG1914 MntH Mn2+ and Fe2+ tra 97.8 0.057 1.2E-06 55.6 28.9 142 120-275 14-156 (416)
79 PF05525 Branch_AA_trans: Bran 97.6 0.086 1.9E-06 54.5 28.1 316 125-485 5-353 (427)
80 PF02133 Transp_cyt_pur: Perme 97.2 0.0012 2.7E-08 69.4 9.5 233 119-364 5-257 (440)
81 COG4147 DhlC Predicted symport 97.0 0.53 1.1E-05 48.5 26.8 172 191-365 103-293 (529)
82 PF01566 Nramp: Natural resist 96.8 0.37 8E-06 49.2 23.0 83 193-279 43-127 (358)
83 PF01235 Na_Ala_symp: Sodium:a 96.7 0.48 1E-05 48.8 22.5 92 119-214 15-110 (416)
84 PRK15433 branched-chain amino 96.4 1.4 3.1E-05 45.7 25.2 316 124-484 9-355 (439)
85 PHA02764 hypothetical protein; 95.9 1.9 4.1E-05 42.2 19.5 87 119-218 10-102 (399)
86 COG1953 FUI1 Cytosine/uracil/t 95.7 3.2 7E-05 43.4 27.2 213 259-484 184-413 (497)
87 KOG2083|consensus 95.2 0.044 9.6E-07 57.5 6.8 228 123-359 30-274 (643)
88 PF02554 CstA: Carbon starvati 94.8 5.2 0.00011 40.3 22.4 105 123-236 52-157 (376)
89 KOG2349|consensus 94.5 0.28 6E-06 52.3 10.4 235 120-367 44-301 (585)
90 KOG1291|consensus 94.0 8.5 0.00018 39.8 24.3 55 178-239 81-135 (503)
91 TIGR01197 nramp NRAMP (natural 93.2 12 0.00025 38.7 29.7 129 130-274 11-144 (390)
92 COG0733 Na+-dependent transpor 92.3 16 0.00034 37.9 25.9 212 122-343 8-249 (439)
93 TIGR00796 livcs branched-chain 92.1 4.8 0.0001 41.2 14.8 73 192-268 255-327 (378)
94 COG4145 PanF Na+/panthothenate 91.9 15 0.00033 36.9 22.5 139 121-268 39-179 (473)
95 PF05525 Branch_AA_trans: Bran 90.8 1.9 4.2E-05 44.7 10.4 67 193-262 262-328 (427)
96 PRK15015 carbon starvation pro 89.5 8.9 0.00019 41.6 14.1 101 126-235 86-187 (701)
97 COG1115 AlsT Na+/alanine sympo 85.0 52 0.0011 34.2 28.4 289 119-415 59-382 (452)
98 PRK15433 branched-chain amino 83.1 20 0.00043 37.4 12.5 67 193-263 266-332 (439)
99 KOG1289|consensus 81.4 23 0.00051 37.6 12.3 47 193-240 326-372 (550)
100 COG1114 BrnQ Branched-chain am 80.6 60 0.0013 33.4 14.4 67 193-262 264-330 (431)
101 KOG3659|consensus 78.3 1E+02 0.0023 33.2 21.2 86 123-219 82-173 (629)
102 PF00209 SNF: Sodium:neurotran 72.2 1.5E+02 0.0032 32.0 24.8 88 256-343 190-284 (523)
103 KOG2466|consensus 72.0 1.4E+02 0.003 31.6 15.1 37 117-153 50-86 (572)
104 PF11085 YqhR: Conserved membr 70.8 36 0.00078 30.3 8.7 32 262-293 123-154 (173)
105 COG1114 BrnQ Branched-chain am 51.9 2.9E+02 0.0064 28.6 26.6 117 345-484 230-354 (431)
106 PLN00151 potassium transporter 50.5 4.3E+02 0.0093 30.1 22.7 15 313-327 348-362 (852)
107 KOG2736|consensus 48.3 73 0.0016 32.1 7.4 52 125-177 343-395 (406)
108 KOG4812|consensus 46.7 49 0.0011 31.1 5.6 81 441-525 159-255 (262)
109 PF03023 MVIN: MviN-like prote 45.3 3.9E+02 0.0084 28.1 16.9 22 400-421 330-351 (451)
110 PRK09598 lipid A phosphoethano 45.2 1.8E+02 0.004 31.3 10.6 30 467-496 123-152 (522)
111 COG0814 SdaC Amino acid permea 44.9 3.8E+02 0.0083 27.9 15.3 49 439-487 326-375 (415)
112 PF12794 MscS_TM: Mechanosensi 43.9 3.6E+02 0.0077 27.2 15.5 28 342-369 47-74 (340)
113 COG1115 AlsT Na+/alanine sympo 40.6 4.2E+02 0.0091 27.8 11.8 124 152-283 299-425 (452)
114 KOG2466|consensus 39.6 1.5E+02 0.0032 31.3 8.3 157 203-361 339-514 (572)
115 PRK13183 psbN photosystem II r 39.0 31 0.00067 23.4 2.3 29 343-371 6-34 (46)
116 PF03672 UPF0154: Uncharacteri 39.0 65 0.0014 23.7 4.1 25 505-529 7-31 (64)
117 PF08019 DUF1705: Domain of un 38.7 2E+02 0.0042 25.3 8.2 26 468-493 69-94 (156)
118 PRK00523 hypothetical protein; 38.6 86 0.0019 23.6 4.8 27 503-529 13-39 (72)
119 COG3763 Uncharacterized protei 38.2 77 0.0017 23.7 4.4 30 500-529 8-38 (71)
120 PRK01844 hypothetical protein; 37.9 83 0.0018 23.7 4.6 27 503-529 12-38 (72)
121 COG5264 VTC1 Vacuolar transpor 35.7 1.5E+02 0.0033 24.8 6.3 72 119-204 31-103 (126)
122 PLN02680 carbon-monoxide oxyge 35.2 1.5E+02 0.0033 28.0 7.1 69 335-406 72-142 (232)
123 TIGR00907 2A0304 amino acid pe 34.7 5.7E+02 0.012 27.0 15.5 44 193-236 290-333 (482)
124 COG1966 CstA Carbon starvation 34.5 6.2E+02 0.014 27.3 28.7 102 124-234 53-155 (575)
125 CHL00020 psbN photosystem II p 33.3 36 0.00078 22.7 1.9 28 344-371 4-31 (43)
126 PF01235 Na_Ala_symp: Sodium:a 32.6 1.4E+02 0.003 31.1 7.1 85 200-287 301-385 (416)
127 COG3817 Predicted membrane pro 32.6 4.1E+02 0.0088 25.5 9.2 31 495-525 168-198 (313)
128 PF02468 PsbN: Photosystem II 32.1 44 0.00094 22.4 2.1 26 345-370 5-30 (43)
129 PF07954 DUF1689: Protein of u 31.8 1.6E+02 0.0036 25.8 6.3 57 466-523 36-94 (152)
130 KOG1287|consensus 29.3 3.5E+02 0.0077 28.7 9.3 86 194-281 275-373 (479)
131 TIGR02230 ATPase_gene1 F0F1-AT 28.8 2.5E+02 0.0054 22.8 6.4 21 496-516 75-95 (100)
132 TIGR00835 agcS amino acid carr 28.4 6.2E+02 0.013 26.5 11.0 80 201-284 329-408 (425)
133 COG1292 BetT Choline-glycine b 24.4 9.1E+02 0.02 26.0 11.7 23 122-144 87-109 (537)
134 TIGR00351 narI respiratory nit 24.1 6.1E+02 0.013 23.9 10.1 56 463-518 90-145 (224)
135 cd08762 Cyt_b561_CYBASC3 Verte 22.8 3.4E+02 0.0075 24.6 6.9 67 338-406 66-133 (179)
136 KOG4580|consensus 22.7 4E+02 0.0087 21.8 6.4 64 119-186 16-80 (112)
137 PRK09928 choline transport pro 22.4 1.1E+03 0.024 26.3 24.0 24 120-143 90-113 (679)
138 PLN02810 carbon-monoxide oxyge 22.1 3.7E+02 0.0081 25.4 7.2 70 335-406 72-142 (231)
139 TIGR00811 sit silicon transpor 21.8 9.5E+02 0.021 25.3 10.8 15 206-220 223-237 (545)
140 COG0728 MviN Uncharacterized m 21.7 1E+03 0.022 25.6 15.7 26 399-424 363-388 (518)
141 COG0534 NorM Na+-driven multid 21.5 8.5E+02 0.018 25.6 10.9 127 335-483 86-215 (455)
142 KOG4112|consensus 21.4 3.4E+02 0.0074 21.6 5.6 45 441-485 32-76 (101)
143 PHA02680 ORF090 IMV phosphoryl 21.0 2.4E+02 0.0053 22.0 4.7 54 314-368 16-70 (91)
144 COG0534 NorM Na+-driven multid 20.6 7.7E+02 0.017 25.9 10.3 29 336-364 311-339 (455)
145 PLN03223 Polycystin cation cha 20.4 1.5E+03 0.032 27.7 12.6 28 201-230 1210-1237(1634)
146 COG2181 NarI Nitrate reductase 20.3 1.6E+02 0.0035 27.6 4.4 56 464-519 91-146 (228)
No 1
>KOG4303|consensus
Probab=100.00 E-value=4.5e-64 Score=470.27 Aligned_cols=413 Identities=57% Similarity=1.000 Sum_probs=396.2
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
.+.+.|++.+++.+|++|++-|.-|++||+|....|||++.+++.++.+|+||+.+|++|..|-++ +|+-.+.+++|.+
T Consensus 111 Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw~i~amvg~A~vCcyTGk~Li~CLYE~~~-dGevVrvRdsYva 189 (524)
T KOG4303|consen 111 GEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYWSIGAMVGVAYVCCYTGKLLIECLYENGE-DGEVVRVRDSYVA 189 (524)
T ss_pred CCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchhHHHHHHhhhhhhhccchhhhhhhccCCC-CCcEEEeehhHHH
Confidence 445688999999999999999999999999999999999999999999999999999999998765 7877788999999
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCT 276 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 276 (530)
++..+++|+.|...+.+.+.+.+..+|+.|++..+|.++..+|+.+++.+-|++++.+.++|.+++|++|..+.+|.+++
T Consensus 190 IA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~~svd~~sWm~i~~a~LLpc~FLk~Lk~VS~lSf~ct 269 (524)
T KOG4303|consen 190 IADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPGLSVDKASWMMITSASLLPCSFLKDLKIVSRLSFFCT 269 (524)
T ss_pred HHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCCCCccccchhhhhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 99999999888889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcccceecccccccccCccchhhHHHHHHHHHHHHH
Q psy17648 277 MSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFK 356 (530)
Q Consensus 277 ~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~~~i~~s~~~~~~~Y 356 (530)
++.+++.++++.||.....+++|+..+...|..+++.++|+++|+|..|..+|.+...|+||++|...+.++.+...++-
T Consensus 270 ~sH~viN~i~v~YCLs~~~dW~wskv~Fsidi~~fPisvG~iVFsYTSqIFLP~LEGNM~~ps~Fn~Ml~WsHIAAaVfK 349 (524)
T KOG4303|consen 270 ISHLVINLIMVLYCLSFVSDWSWSKVTFSIDINTFPISVGMIVFSYTSQIFLPNLEGNMKNPSQFNVMLKWSHIAAAVFK 349 (524)
T ss_pred HHHHHHHHHHHHHHHHHhhhccceeEEEEEEcccCceEEEEEEEeeeceeeccccccccCChhHheeeeehHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhccCCchhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCC-CCCCCccccCCcchhh
Q psy17648 357 SMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGG-DSQFPSIWHLDGELKV 435 (530)
Q Consensus 357 ~~~g~~gy~~fG~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 435 (530)
.++|.++|++||+.++..|.+|+|+..+..++++++++..+.+||+.+|.+.+.+++.++++. +..+|..|+.|++++.
T Consensus 350 ~~Fg~~~fLTf~~~TqevItnnLp~qsfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~Fpscys~Dg~Lk~ 429 (524)
T KOG4303|consen 350 VVFGMLGFLTFGELTQEVITNNLPNQSFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTPFPSCYSPDGSLKE 429 (524)
T ss_pred HHHHHheeeeechhhHHHHhcCCCccchhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCCCceeeCCCcchhh
Confidence 999999999999999999999999988999999999999999999999999999998877654 7788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCCchhhhhhhhhhHHHHHHHHHHHHHH
Q psy17648 436 WGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYD 515 (530)
Q Consensus 436 ~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~y~ 515 (530)
|.+.+|+++++.++++|+.+|.|..+++++|++.+++++|++|+++|++++++...+.++..+..++++|..+++.|+|.
T Consensus 430 WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~ 509 (524)
T KOG4303|consen 430 WGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYF 509 (524)
T ss_pred heeeeeeHHHHHHHHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCC
Q psy17648 516 SGSAMIQAFEIGLPF 530 (530)
Q Consensus 516 si~~ii~~~~~~~p~ 530 (530)
|..++|++++.+.|+
T Consensus 510 S~~~Li~A~~~~~~~ 524 (524)
T KOG4303|consen 510 SSMELIRAINSADSD 524 (524)
T ss_pred hhHHHHHHHhccCCC
Confidence 999999999999885
No 2
>KOG1304|consensus
Probab=100.00 E-value=3.5e-57 Score=451.43 Aligned_cols=387 Identities=21% Similarity=0.358 Sum_probs=349.8
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
.++..|..++..|+.+.++|+|+|++|+||+++|++ |.+..++++++|.||++.+++|.++++++.++. ..+|++.
T Consensus 43 ~~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~---~~~y~~~ 119 (449)
T KOG1304|consen 43 REHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGP---SLDYAET 119 (449)
T ss_pred CCCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc---cccHHHH
Confidence 456789999999999999999999999999999999 899999999999999999999999998765443 4688877
Q ss_pred HHHhh----------CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC---CCccchhHHHHHHHHHHHhhhhccc
Q psy17648 198 ASECF----------GPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFP---DGAIDTRSWMMLIGIFLIPLGFLKS 264 (530)
Q Consensus 198 ~~~~~----------G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~---~~~~~~~~~~~i~~~~~~pl~~~~~ 264 (530)
++.++ || ++|.+++++++++++|.|++|++++++++++++. +...+.+.|+++..+..++++++|+
T Consensus 120 ~~~a~~~~~~~~r~~g~-~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~~~~~s~~~~i~~~~~~~lll~~Ir~ 198 (449)
T KOG1304|consen 120 AESAMEGGPGWLRKYGP-AARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHSPGVLSVRLYILIQLPPLLLLNLIRN 198 (449)
T ss_pred HHHHHcCCcHHHHhhcH-HHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence 77654 66 7899999999999999999999999999999987 3467889999999999999999999
Q ss_pred chhhhHHHHHHHHHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcccceecccccccccCccchh--
Q psy17648 265 LHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFD-- 342 (530)
Q Consensus 265 l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~-- 342 (530)
+|.++.+|.++.+..++.+++++++.+.+.+ +.++.+...++.+++.++|+.+|||+|+..+.+++++||+|++|+
T Consensus 199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~--~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~ 276 (449)
T KOG1304|consen 199 LKILSPFSLFANVFILVGLAIIMYYLVQDLP--PTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGP 276 (449)
T ss_pred hHHhhHHHHHHHHHHHHHHHHHHHHHHhccC--CccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCc
Confidence 9999999999999999999999998888777 344555556688999999999999999999999999999999998
Q ss_pred -hHHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCC
Q psy17648 343 -WMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDS 421 (530)
Q Consensus 343 -~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~ 421 (530)
+++..++.+++++|+.+|++||++||+++++.|+.|+|++++...+++++++.++.+||+++|++.+++|+.+.++-.
T Consensus 277 ~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~- 355 (449)
T KOG1304|consen 277 FGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQEILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFS- 355 (449)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCccHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcC-
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997532211
Q ss_pred CCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCC---chhhhhhh
Q psy17648 422 QFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSL---SIQSVAFD 498 (530)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~---~~~~~~~~ 498 (530)
++ +.++....+|..+++++..+|.++|+++.+++++|+++++.+++++|++++++.++++. .+|+.+.+
T Consensus 356 --~~------~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~n 427 (449)
T KOG1304|consen 356 --EN------RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKN 427 (449)
T ss_pred --cc------hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHH
Confidence 11 12556689999999999999999999999999999999999999999999999987544 35668999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHH
Q psy17648 499 CFVIFLGCLFGIIGVYDSGSAM 520 (530)
Q Consensus 499 ~~~i~~g~~~~v~g~y~si~~i 520 (530)
++++++|++.++.|||+++.++
T Consensus 428 i~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 428 IVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999999999999864
No 3
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=5.1e-51 Score=427.31 Aligned_cols=381 Identities=18% Similarity=0.228 Sum_probs=311.8
Q ss_pred CCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHH
Q psy17648 121 HKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIAS 199 (530)
Q Consensus 121 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~ 199 (530)
.+.+..++++|++|+++|+|+|++|+|++++||+ |++++++++.++.|+++++.+|.++.+ ..+|+|+++
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~~---------~~sY~~la~ 128 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKTN---------IRTYEGVAR 128 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCC---------CCCHHHHHH
Confidence 4578899999999999999999999999999999 899999999999999999999876421 349999999
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccc--------hh-HHHHHHHHHHHhhhhcccchhhhH
Q psy17648 200 ECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAID--------TR-SWMMLIGIFLIPLGFLKSLHHVSM 270 (530)
Q Consensus 200 ~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~--------~~-~~~~i~~~~~~pl~~~~~l~~l~~ 270 (530)
++||| ++++++++++++.++|.|++|+++.+|.++.++++...+ .+ .+.+++.++++|++++|+++.+++
T Consensus 129 ~~~G~-~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~ 207 (467)
T PTZ00206 129 VLLGP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFLKQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRY 207 (467)
T ss_pred HHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchhhhccCcEEeeeehhhhHhhhcccccchHHHHH
Confidence 99999 799999999999999999999999999998887542111 12 234456678999999999999999
Q ss_pred HHHHHHHHHHHHHHhheeeeeee-cCcc------CCcc-cc-cccc-ccchhHHHHHhhhhcccceecccccccccCcc-
Q psy17648 271 LSFWCTMSHIVINVVILGYCLLQ-IGDW------GWGK-VK-WTLD-MENFPISLGVIVFSYTSQIFLPTLEGNLIDRS- 339 (530)
Q Consensus 271 ~s~~~~~~~~~~~~iii~~~~~~-~~~~------~~~~-~~-~~~~-~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~- 339 (530)
+|.+++++.++.++++++++..+ .++. +.++ .+ ..++ ..+++.++++++|||.||.+++++++|||+|+
T Consensus 208 ~S~i~~~~i~~~vi~ivi~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~~~t~ 287 (467)
T PTZ00206 208 VSTIAVSFMVYLVIVIVVHSCMNGLPENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSV 287 (467)
T ss_pred HHHHHHHHHHHHHhhhhhhhhcccCcccccccccCCCCCCceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhcccch
Confidence 99999988777766665544432 2221 0000 00 0112 23467899999999999999999999999854
Q ss_pred -chhhHHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhccC-CC-chHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 340 -KFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNF-DS-AWFRGFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 340 -~~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~-~~-~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
|+.+++..++.++.++|.++|++||++||++++++++.|+ |. +....+.++++++.++.+||++.+|+|+.+++.+.
T Consensus 288 ~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~ 367 (467)
T PTZ00206 288 GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNEPAIMVGFVGVLVKLFVSYALLGMACRNALYDVIG 367 (467)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCCchhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhC
Confidence 6778999999999999999999999999999999999999 43 45677788889999999999999999999988762
Q ss_pred cCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhh---cCCCCchh
Q psy17648 417 KGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKL---KGGSLSIQ 493 (530)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~---~~~~~~~~ 493 (530)
.+. .+.+ .+++...+..+.++++++|+++|+++.+++++|+++++.++|++|+++|++. ++++..++
T Consensus 368 ~~~-~~~~---------~~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~ 437 (467)
T PTZ00206 368 WDA-RKVA---------FWKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPF 437 (467)
T ss_pred CCc-ccCc---------hhhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchH
Confidence 221 1111 2234455666677889999999999999999999999999999999999984 33344455
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy17648 494 SVAFDCFVIFLGCLFGIIGVYDSGSAMI 521 (530)
Q Consensus 494 ~~~~~~~~i~~g~~~~v~g~y~si~~ii 521 (530)
.++.+++++++|++.++.|||+++++.+
T Consensus 438 ~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 438 YYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 5688999999999999999999999875
No 4
>KOG1303|consensus
Probab=100.00 E-value=4.8e-49 Score=400.61 Aligned_cols=393 Identities=23% Similarity=0.401 Sum_probs=338.5
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
.+|+.|++++.++.++.++|.|+|++|||++++||+ |++++++.++++.||+++|.+|+++.+...|+| ..+|.|+
T Consensus 34 ~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r---~~~Y~dl 110 (437)
T KOG1303|consen 34 PSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKR---RYRYPDL 110 (437)
T ss_pred cCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcc---CCChHHH
Confidence 466799999999999999999999999999999999 699999999999999999999999988777776 4799999
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-----ccchhHHHHHHHHHHHhhhhcccchhhhHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG-----AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLS 272 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~-----~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 272 (530)
++++||++ +++++.+++.+..+++|+.|++..+++++.+++.. ..+.+.|+++++++.+|++++++++.++++|
T Consensus 111 ~~~afG~~-~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~~l~~~S 189 (437)
T KOG1303|consen 111 GQAAFGPK-GRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFHSLSYLS 189 (437)
T ss_pred HHHHhCCC-ceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcchhHHHH
Confidence 99999995 69999999999999999999999999999887532 3446789999999999999999999999999
Q ss_pred HHHHHHHHHHHHhheeeeeeecCccCCcccccc-ccccch-hHHHHHhhhhcccceecccccccccCccchhhHHHHHHH
Q psy17648 273 FWCTMSHIVINVVILGYCLLQIGDWGWGKVKWT-LDMENF-PISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHI 350 (530)
Q Consensus 273 ~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~-~~~~~~-~~a~~~~~faf~~~~~i~~i~~em~~p~~~~~~i~~s~~ 350 (530)
..+.+..+....+.++.++.+......+..... .+.... +++++++.|+|+||..+|+|+..||+|.+++|++.+++.
T Consensus 190 ~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~f~a~g~iaFaf~gH~v~peIq~tMk~p~~f~~~~lis~~ 269 (437)
T KOG1303|consen 190 LVGAVMSTLYAVILIVLGIADGVGFCAPSGGYLDLGTIPTVFTALGIIAFAYGGHAVLPEIQHTMKSPPKFKKALLISYI 269 (437)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccCCcccCcccCCCCcchhhhhhheeeeecCCeeeeehHhhcCCchhhhhHHHHHHH
Confidence 999988877777766666554432211111111 111122 699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhhccCCchhhhhccCC-CchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCccccC
Q psy17648 351 AAAIFKSMFGYLCFLTFQNDTQQVITNNFD-SAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHL 429 (530)
Q Consensus 351 ~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~-~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (530)
+++++|+.+++.||++|||++.++++.|++ +.|+...+++++.++++.++..+..|..+.+|+........ +..
T Consensus 270 ~~~~~y~~vai~GY~aFG~~~~~~il~s~~~p~~~~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~-~~~---- 344 (437)
T KOG1303|consen 270 IVTFLYFPVAIIGYWAFGDSVPDNILLSLQPPTWLIALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD-FKK---- 344 (437)
T ss_pred HHHHHHHHHHHhhhhhhccccchhhhhcccCchhHHHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc-ccc----
Confidence 999999999999999999999999999996 66899999999999999999999999999999987433221 111
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCCchhhhhhhhhh-HHHHHHH
Q psy17648 430 DGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFV-IFLGCLF 508 (530)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~-i~~g~~~ 508 (530)
...+.|.+.|..+++.+.++|+.+|.|+.+++++|++....+++++|+++|++.+++++...+++.++.+ +++++++
T Consensus 345 --~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~ 422 (437)
T KOG1303|consen 345 --RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLL 422 (437)
T ss_pred --cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhH
Confidence 2234578999999999999999999999999999999999999999999999998765555556677777 7888888
Q ss_pred HHHHHHHHHHHHHH
Q psy17648 509 GIIGVYDSGSAMIQ 522 (530)
Q Consensus 509 ~v~g~y~si~~ii~ 522 (530)
++.....+++.++.
T Consensus 423 ~v~~~~~~~~~li~ 436 (437)
T KOG1303|consen 423 SVLAAVGGVRSLII 436 (437)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888888764
No 5
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.1e-46 Score=392.51 Aligned_cols=393 Identities=12% Similarity=0.167 Sum_probs=318.0
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCcc---c-cCCC
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRV---R-VRNS 193 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~---~-~~~~ 193 (530)
..++.+..++.+++++..+|.|+|+||+||+++||+ |++.++++++++.||++++.+|+.+...+..++. + ...+
T Consensus 42 ~~~~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~ 121 (473)
T PLN03074 42 LWHGGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQ 121 (473)
T ss_pred ccCCchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHH
Confidence 456789999999999999999999999999999999 8999999999999999999998876553221100 0 1136
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHH
Q psy17648 194 YVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSF 273 (530)
Q Consensus 194 y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 273 (530)
|.|+++..+|| +++.+..+...+++++.|+.|++..++.+..+. ...+.+.|++++.++++|++++|+++.++++|.
T Consensus 122 ~~e~~~~~~G~-~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~--~~~~~~~~~~i~~~v~~~~~~i~sl~~l~~~S~ 198 (473)
T PLN03074 122 WFEVLDGLLGP-YWKNVGLAFNCTFLLFGSVIQLIACASNIYYIN--DNLDKRTWTYIFGACCATTVFIPSFHNYRIWSF 198 (473)
T ss_pred HHHHHHHhcCh-hHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhC--CCcCCCeEEeehHHHHHHHHHccCHHHHHHHHH
Confidence 88999999999 567888888889999999999999888877663 256778899999999999999999999999999
Q ss_pred HHHHHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcccceecccccccccCccchhhHHHHHHHHHH
Q psy17648 274 WCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAA 353 (530)
Q Consensus 274 ~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~~~i~~s~~~~~ 353 (530)
++..+.+.....++...+......+.++. .+.++..++.++++++|||+||..+|++++|||+|++|+++...+...++
T Consensus 199 ig~~~tl~~av~i~i~~i~~~~~~~~~~~-~~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P~~F~~~~~l~~~~v~ 277 (473)
T PLN03074 199 LGLLMTTYTAWYMTIAALSHGQVEGVKHS-GPTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKPQKFKYIYLAATLYVL 277 (473)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCCCCCC-CchhHHHHHHHHHHHHHHhcccccHHHHHHhccChhcccchHHHHHHHHH
Confidence 99887554433333222222111122111 12234456677888999999999999999999999999999889999999
Q ss_pred HHHHHHHhHhhhhccCCch--hhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCccccCCc
Q psy17648 354 IFKSMFGYLCFLTFQNDTQ--QVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHLDG 431 (530)
Q Consensus 354 ~~Y~~~g~~gy~~fG~~~~--~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (530)
++|+.+++.+|+.|||++. ++.++|+|++.+..+++++++++++.+|+++++|..+..|+.... ++ +
T Consensus 278 ~~y~~~~~~gY~~fG~~~~~~s~~l~~lp~~~~~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~-~~----------~ 346 (473)
T PLN03074 278 TLTLPSAAAVYWAFGDELLTHSNAFSLLPRSGWRDAAVILMLIHQFITFGFACTPLYFVWEKAIGV-HD----------T 346 (473)
T ss_pred HHHHHHHHeeeeeechhhhhchhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcc-cc----------c
Confidence 9999999999999999875 467888987667889999999999999999999999988886522 11 1
Q ss_pred chhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCC-------------Cchh--hhh
Q psy17648 432 ELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGS-------------LSIQ--SVA 496 (530)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~-------------~~~~--~~~ 496 (530)
+..+.|+++|+.++++++++|..+|+|+.+++++||++++.+++++|+++|++.++++ ..++ ..+
T Consensus 347 k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (473)
T PLN03074 347 KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYV 426 (473)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehh
Confidence 1235578899999999999999999999999999999999999999999999865432 1122 358
Q ss_pred hhhhhHHHHHHH-HHHHHHHHHHHHHHHhhc
Q psy17648 497 FDCFVIFLGCLF-GIIGVYDSGSAMIQAFEI 526 (530)
Q Consensus 497 ~~~~~i~~g~~~-~v~g~y~si~~ii~~~~~ 526 (530)
+++++++++.++ ++.|+|+|+++|+++++.
T Consensus 427 ~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~ 457 (473)
T PLN03074 427 VNAFVVVWVLVVGFGFGGWASMTNFVRQIDT 457 (473)
T ss_pred hhhHHHHhhhhHhhccchHHHHHHHHHhhhh
Confidence 899999865555 689999999999999885
No 6
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=2.2e-49 Score=412.66 Aligned_cols=388 Identities=27% Similarity=0.473 Sum_probs=327.2
Q ss_pred CCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHH
Q psy17648 121 HKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIAS 199 (530)
Q Consensus 121 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~ 199 (530)
||.|.++++++++|+++|+|+|++|++++++||+ |++++++++.++.|+.+++.++..+.+.+ ++..+|+|+++
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~~~-----~~~~~y~~l~~ 75 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMPNG-----TGRRSYGDLAR 75 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccccc-----ccccccccccc
Confidence 5789999999999999999999999999999999 89999999999999999999998765411 12569999999
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC----ccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 200 ECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG----AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 200 ~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~----~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
+++|| ++++++++++.+.+++.+++|+++.+|.+.++++.. ..+...+.++..++++|++++|+++.++++|.++
T Consensus 76 ~~~G~-~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s~~~ 154 (409)
T PF01490_consen 76 RAFGP-KGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGDLFISRYVWIIIFALIVLPLSFLKNLKSLRYLSILG 154 (409)
T ss_pred ccccc-cccccccchheeccccccceeEEEeeeeeecccccccccccccccccccccccccccccccchhhHHHHHhhhh
Confidence 99999 589999999999999999999999999999988762 4567788888889999999999999999999999
Q ss_pred HHHHHHHHHhheeeeeeecCccCCc--c--ccccccccchhHHHHHhhhhcccceecccccccccCccchh---hHHHHH
Q psy17648 276 TMSHIVINVVILGYCLLQIGDWGWG--K--VKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFD---WMLDWS 348 (530)
Q Consensus 276 ~~~~~~~~~iii~~~~~~~~~~~~~--~--~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~---~~i~~s 348 (530)
.++.+..+.+++.......+..+.+ . .....++.+++.++++++|||.||.++|++++|||+|++++ +++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~~~~~~~~~~~~s 234 (409)
T PF01490_consen 155 LFSIFYFIVIVVIYIISYGPGEPSGVPSPPVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPSKFKKMKKVLSIS 234 (409)
T ss_pred hhccceeeeeecceeeeeecccccccccccccccchhhHHHHhhhhhhhhhhcccccceeeeeccCCccccccceeeeeh
Confidence 9887764233333333222221111 1 11223456789999999999999999999999999999977 899999
Q ss_pred HHHHHHHHHHHHhHhhhhccCCchhhhhccCCCch-HHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccC--CCCCCCc
Q psy17648 349 HIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAW-FRGFVNFFLVVKALLSYPLPYYAACELLETNYFKG--GDSQFPS 425 (530)
Q Consensus 349 ~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~-~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~--~~~~~~~ 425 (530)
+.+++++|+++|+.||++||++++++++.|++++. +..++++++.++++.++|++.+|+++.+++.+.+. .+.+.+
T Consensus 235 ~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~~~- 313 (409)
T PF01490_consen 235 MIICFIIYLLFGIFGYLAFGDSVQGNILLNLPNDDVLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRDSP- 313 (409)
T ss_pred hhhhhHHhhhhhhcccceeeeeecchhhhcCCCcccccccccccchhhhhhccccccchhHhhhhhheecccccccccc-
Confidence 99999999999999999999999999999999874 88999999999999999999999999999987653 001111
Q ss_pred cccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCCchhh-----hhhhhh
Q psy17648 426 IWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQS-----VAFDCF 500 (530)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~-----~~~~~~ 500 (530)
..+...++++..+|+.++++++++|..+|+++.+++++|++++..++|++|+++|++.++++..++. ....++
T Consensus 314 --~~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (409)
T PF01490_consen 314 --KNTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWI 391 (409)
T ss_pred --ccccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceE
Confidence 1111224556899999999999999999999999999999999999999999999999876543322 255789
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy17648 501 VIFLGCLFGIIGVYDSG 517 (530)
Q Consensus 501 ~i~~g~~~~v~g~y~si 517 (530)
.+++|++.++.|+|.++
T Consensus 392 ~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 392 IIVFGVVLMVFGTYQSI 408 (409)
T ss_pred EEEEeeehhHHhHHHHc
Confidence 99999999999999876
No 7
>KOG1305|consensus
Probab=100.00 E-value=3.5e-40 Score=334.26 Aligned_cols=385 Identities=21% Similarity=0.310 Sum_probs=317.5
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
.+++.+.+++++|++|+++|+|++++|+||++.|++ |++++.+++.++.++.+++.+|..+.+ ..+|+++
T Consensus 2 ~~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~---------~~ty~~l 72 (411)
T KOG1305|consen 2 MSGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG---------ERTYSSL 72 (411)
T ss_pred CCCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC---------CCCHHHH
Confidence 345678999999999999999999999999999998 899999999999999999999987643 2399999
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC----c----c-chhH-HHHHHHHHHHhhhhcccchh
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG----A----I-DTRS-WMMLIGIFLIPLGFLKSLHH 267 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~----~----~-~~~~-~~~i~~~~~~pl~~~~~l~~ 267 (530)
++..+|+ .++....+.......+ |++|++..+|.+..+.... . + +... |.+....+++||++.|++..
T Consensus 73 ~~~~~g~-~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~~~~~~~~ill~~~~~i~pLsl~k~l~~ 150 (411)
T KOG1305|consen 73 GDLIFGK-LGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSHYLDRNFLILLVLLFIILPLSLLKNLDS 150 (411)
T ss_pred HHHHcCC-CceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccccccceeEeehHHHHHHHHHHHHHhhhh
Confidence 9999999 5755555555555555 6999999999988654321 1 1 1122 56777899999999999999
Q ss_pred hhHHHHHHHHHHHHHHHhheeeeeeecC-ccCCcc-ccccccccchhHHHHHhhhhcccceecccccccccCccc--hhh
Q psy17648 268 VSMLSFWCTMSHIVINVVILGYCLLQIG-DWGWGK-VKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK--FDW 343 (530)
Q Consensus 268 l~~~s~~~~~~~~~~~~iii~~~~~~~~-~~~~~~-~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~--~~~ 343 (530)
+++.|.++..+.+..++++++..+.... ..+... .+....+.+++.++++++|||.||.+..++++|||||++ ..+
T Consensus 151 Lk~tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~s~~~i~~ 230 (411)
T KOG1305|consen 151 LKYTSALSLASVVYFVVLVVYKYFQGPCALGRLSYLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDRSVKKIQR 230 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcccccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCchHHHHHH
Confidence 9999999999988888877776665332 111111 111112257889999999999999999999999999986 578
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhccCCCchH-------HHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 344 MLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWF-------RGFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 344 ~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~-------~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
+...+...+.++|..+|++||++||+.+.+|++.++++..- ...++..+++.++.++|+..||+|..+.+.++
T Consensus 231 v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~ 310 (411)
T KOG1305|consen 231 VSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLF 310 (411)
T ss_pred HHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhc
Confidence 99999999999999999999999999999999999987522 47899999999999999999999999988877
Q ss_pred cCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCCchhhhh
Q psy17648 417 KGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVA 496 (530)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~ 496 (530)
+.+.++.+.. ...+.+++..+..++.+.|+.+|+++.++.++||+++++++|++|+++|++.+++ +++++.
T Consensus 311 ~~~~~~~~~s-------~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~ 381 (411)
T KOG1305|consen 311 PYQPGLTSFS-------GKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPL 381 (411)
T ss_pred ccCCCCCCcc-------ceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccch
Confidence 6553221111 1224688899999999999999999999999999999999999999999999886 667788
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17648 497 FDCFVIFLGCLFGIIGVYDSGSAMIQA 523 (530)
Q Consensus 497 ~~~~~i~~g~~~~v~g~y~si~~ii~~ 523 (530)
..++..++++...++|+...+.++..+
T Consensus 382 ~~~~~~~~~~~~~i~~~~~~i~~~~~~ 408 (411)
T KOG1305|consen 382 GALIFLILGVLLSIIGVAVMIYDLLAK 408 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999888887754
No 8
>KOG1287|consensus
Probab=100.00 E-value=8.1e-36 Score=300.56 Aligned_cols=380 Identities=14% Similarity=0.179 Sum_probs=304.0
Q ss_pred CccCCCCccHHHHHHHHHhhhhccccchhHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---cCCCCccccC
Q psy17648 116 GERSRHKINEWQAAWNVTNAIQGMFIVSLPFA-VLRGGYWAIFAMIGIAYICCYTGKILVECLYEID---PNTGQRVRVR 191 (530)
Q Consensus 116 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~---~~~g~~~~~~ 191 (530)
..+.+||.+.+.++..+++++||+|+|..|.+ .+++| ++.+.+++|++|..-+..-..|+.|++ |++|+
T Consensus 7 ~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~g--svg~sL~iWv~~gi~s~~galcyaELGT~ipksGg----- 79 (479)
T KOG1287|consen 7 EVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTG--SVGLSLIIWVFCGIISIIGALCYAELGTSIPKSGG----- 79 (479)
T ss_pred cccccceeeeecceeEEEEeeEecccccCcHHHHHcCC--chhHHHHHHHHHHHHHHHHHHHHHHHhccccCCCc-----
Confidence 44578999999999999999999999999987 66677 455555566666666666678899988 77776
Q ss_pred CCHHHHHHHhhCchhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcc--cchhh
Q psy17648 192 NSYVSIASECFGPVWGARAVNLAQMIELLMT-CILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLK--SLHHV 268 (530)
Q Consensus 192 ~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~-~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~--~l~~l 268 (530)
+|.++.+ +||+.++....|+...+..-.. .+..+.+..+.+++++|.|..+.....++.+++++.+.+++ ++|..
T Consensus 80 -d~ayi~~-afg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp~c~~p~~~~~lla~~~l~~lt~~n~~~V~~a 157 (479)
T KOG1287|consen 80 -DYAYISE-AFGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFPLCDVPRVASKLLAAALLVLLTLINSFSVKWA 157 (479)
T ss_pred -chhhHHH-HhccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCCCCCCchHHHHHHHHHHHHHHHHHhhhhhhHH
Confidence 8888888 8999888888888777775555 55555555556999999888888888888888888888887 89999
Q ss_pred hHHHHHHHHHHHHHHHhheeeeeeecCccCCcccccc------ccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 269 SMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWT------LDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 269 ~~~s~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~------~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
++++.+.++++++++.++++.++......+.++.... .+.+++..+++...|||.||+.+..+.+|+|||+| .
T Consensus 158 ~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~~~g~i~lafysglfa~~GWd~lN~vteEiknP~ktL 237 (479)
T KOG1287|consen 158 TRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDTDVGNIALAFYSGLFAFSGWDYLNYVTEEIKNPRRTL 237 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcCchHHHHHHHHHhhhcccCchhhccchHhhcCccccc
Confidence 9999999999999999888888775544444432222 45667889999999999999999999999999999 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhcc------CC---CchHHHHHHHHHHHHHHHhccchhhhHHHHHH
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNN------FD---SAWFRGFVNFFLVVKALLSYPLPYYAACELLE 412 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~------~~---~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~ 412 (530)
|+++.+++.+++++|++++++++..-- .+.++.+ +. -..+.++++++++++.+++.+..++..+|.+
T Consensus 238 P~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~Fa~~~~G~~~~~ip~~ValS~~G~~n~~ifs~SR~~- 313 (479)
T KOG1287|consen 238 PRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTFADRILGVFAWAIPFSVALSLIGSLNSVIFSSSRLF- 313 (479)
T ss_pred hHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHHHHHhccchHHHHHHHHHHHhhhhhhhHHHHHHHHH-
Confidence 999999999999999999998876321 1122111 11 1145699999999999999999999999999
Q ss_pred HhhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCC
Q psy17648 413 TNYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGS 489 (530)
Q Consensus 413 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~ 489 (530)
+...|++|.|.. .|.++.+|++++++.....++..++. |++.++|+++...+....+.+-+++|+|.++++
T Consensus 314 --~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~~~----d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~ 387 (479)
T KOG1287|consen 314 --YAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSLIG----DFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPP 387 (479)
T ss_pred --HHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHHHh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 455678888875 45666688888888777777666665 999999999999999999999999999999998
Q ss_pred Cchhhh---hhhhhhHHHHHHHHHHHHH
Q psy17648 490 LSIQSV---AFDCFVIFLGCLFGIIGVY 514 (530)
Q Consensus 490 ~~~~~~---~~~~~~i~~g~~~~v~g~y 514 (530)
.+|+.| ..+.+.+++++.+.++..+
T Consensus 388 ~~rPiKvpl~~p~~~~~~~i~lvvip~~ 415 (479)
T KOG1287|consen 388 LPRPIKVPLFIPILFLLICIFLVVIPII 415 (479)
T ss_pred CCCCEeeeeehHHHHHHHHHHHhheeee
Confidence 888876 5556666666666655544
No 9
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=99.98 E-value=6.4e-30 Score=263.11 Aligned_cols=383 Identities=17% Similarity=0.186 Sum_probs=290.9
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
+.+++.+..++++++.+++||+|+|++|++++..|++ +++++++.|.++.++.+++.|+..+.+.. ..+|.+
T Consensus 4 ~~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~-------~~~~~~ 76 (415)
T COG0814 4 SMKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG-------KASITS 76 (415)
T ss_pred cccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-------cccHHH
Confidence 3567788999999999999999999999999999999 79999999999999999999999875421 139999
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC---Cc-cchhHHHHHHHHHHHhhhhcccchhhhHHH
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD---GA-IDTRSWMMLIGIFLIPLGFLKSLHHVSMLS 272 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~---~~-~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 272 (530)
++++.+|| .+++++++.+.+.+++.+.+|.+..++.+++.+++ .. .++..+.+++..++.++++.++...++..+
T Consensus 77 ~~~~~~G~-~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~~~~r~~~~lif~~~~~~l~~~~~~~~lk~ts 155 (415)
T COG0814 77 LVEDYLGK-KGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFALVLAFLSWLGTLAVLKITS 155 (415)
T ss_pred HHHHHhCc-chHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccCCcchHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 99999999 58999999999999999999999999999988764 12 456667777888888899999999998888
Q ss_pred HHHHHHHHHHHHhheeeeeeecCccCCccccc-----cccccchhHHHHHhhhhcccceecccccccccCccc--hhhHH
Q psy17648 273 FWCTMSHIVINVVILGYCLLQIGDWGWGKVKW-----TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK--FDWML 345 (530)
Q Consensus 273 ~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~-----~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~--~~~~i 345 (530)
.+....++..++...+... .++.+.... ..++..+..++++++|||+||+++|++.+|||++++ .+|++
T Consensus 156 ~l~~~~v~~~~~l~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~~~~~~k~~ 231 (415)
T COG0814 156 LLVFGKVIYLVLLVVYLIP----HWNPANLFALPSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNSKKAVRKAI 231 (415)
T ss_pred HHHHHHHHHHHHHHHHHhc----ccCHHHHhcccccchhhHHHHHHHhhHHHhhhhCCccchHHHHHhccchhHHHHHHH
Confidence 8877666655554433322 222211111 244566789999999999999999999999997765 79999
Q ss_pred HHHHHHHHHHHHHHHhHhhhhccCCchhhhhccCCCch--------------HHHHHHHHHHHHHHHhccchhhhHHHHH
Q psy17648 346 DWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAW--------------FRGFVNFFLVVKALLSYPLPYYAACELL 411 (530)
Q Consensus 346 ~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~--------------~~~i~~~~~~i~~~~s~pl~~~~~~~~~ 411 (530)
.++..+..++|..+++++|..+|+.+.++++.+.+++. .....+++..+++..++-.+.....+..
T Consensus 232 ~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~ 311 (415)
T COG0814 232 LIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQNISLLSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGL 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhh
Confidence 99999999999999999999999999999999987642 2345556666666666666666666666
Q ss_pred HHhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCCc
Q psy17648 412 ETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLS 491 (530)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~ 491 (530)
++.+.+.+ .+ ++ .+.......+.......+.....+...|..+.++..+|+.....+.+..|...+.+....+..
T Consensus 312 ~~~~~~~~-~~-~~---r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~ 386 (415)
T COG0814 312 ADLFKKSN-SK-PG---RKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVY 386 (415)
T ss_pred hHHHHhcc-Cc-cc---chhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeec
Confidence 66554311 11 10 000111112334445556666777777888888888888888888888888777666443322
Q ss_pred hhhhhhhhhhHHHHHHHHHHHHHHHH
Q psy17648 492 IQSVAFDCFVIFLGCLFGIIGVYDSG 517 (530)
Q Consensus 492 ~~~~~~~~~~i~~g~~~~v~g~y~si 517 (530)
+..+...++++++|+..++...+...
T Consensus 387 ~g~~~~~~~v~~~Gi~~~~~~~~~~~ 412 (415)
T COG0814 387 GGNFLLLLLVLLFGILVILSPFLATF 412 (415)
T ss_pred CCCchhHHHHHHHHHHHHHHHHHHHh
Confidence 32224678888888888887776543
No 10
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.94 E-value=5.7e-24 Score=215.08 Aligned_cols=366 Identities=12% Similarity=0.123 Sum_probs=261.5
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
.+||.+...+.+.+.++.||+|+|++|.+.+.+|+. ++++++++|+.+.||+.++.|...+.++ ..++..+
T Consensus 5 ~~~~~~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~--------g~~l~tm 76 (415)
T PRK09664 5 AEKKHSAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV--------GSSFNTI 76 (415)
T ss_pred hhhccchhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCHHHH
Confidence 344558899999999999999999999999999998 7999999999999999999999766532 3499999
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC---CccchhHHHHHHHHHHHhhhhcccchhhhHHHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD---GAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFW 274 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~---~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 274 (530)
+|+.+|| .++.+.++++.+..++.+++|+.-.++.+++.+++ .+.+.+...++++++.-.+.+.. .+...+++-+
T Consensus 77 a~~~LG~-~g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~g-t~~vd~~nr~ 154 (415)
T PRK09664 77 TKDLIGN-TWNIISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWIS-SLAASRITSL 154 (415)
T ss_pred HHHHcCh-HHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHhc-hhHHHHHHHH
Confidence 9999999 58999999999999999999999999999988754 13344444445555444444443 3555555554
Q ss_pred HHHHHHHHHHhheeeeeeecCccCCccccccc-c------ccchhHHHHHhhhhcccceeccccccccc-CccchhhHHH
Q psy17648 275 CTMSHIVINVVILGYCLLQIGDWGWGKVKWTL-D------MENFPISLGVIVFSYTSQIFLPTLEGNLI-DRSKFDWMLD 346 (530)
Q Consensus 275 ~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~-~------~~~~~~a~~~~~faf~~~~~i~~i~~em~-~p~~~~~~i~ 346 (530)
....+++..++.+.... |+.+.++..... + ...+..+++++++||+.|+++|++.+.++ |++|.+|++.
T Consensus 155 l~~~~ii~f~~~~~~l~---~~i~~~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~~~~~kaIl 231 (415)
T PRK09664 155 FLGLKIISFVIVFGSFF---FQVDYSILRDATSTTAGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRKDKLIKSVV 231 (415)
T ss_pred HHHHHHHHHHHHHHHHh---hcccHHHHhcCccccccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccHHHHHHHHH
Confidence 44444444333222222 222222211111 0 22366899999999999999999999987 5567788999
Q ss_pred HHHHHHHHHHHHHHhHhhh-----------hccCCchh---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHH
Q psy17648 347 WSHIAAAIFKSMFGYLCFL-----------TFQNDTQQ---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLE 412 (530)
Q Consensus 347 ~s~~~~~~~Y~~~g~~gy~-----------~fG~~~~~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~ 412 (530)
.+..+..++|++.-.+... ..|+++.. ....+....+...+.+++..+++.+||-.......|.+.
T Consensus 232 ~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~ 311 (415)
T PRK09664 232 FGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLA 311 (415)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888655333211 22323222 122233445677889999999999999999999999999
Q ss_pred HhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC-CC
Q psy17648 413 TNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPH-FAILMGFIGSFTGTMLSFIWPCYFHLKLKGG-SL 490 (530)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~-~~ 490 (530)
+.+..+++.+ . |...-.+..+.+++++.+.|+ |-..+++.|.. ...+..++|+++.+|.|++ ..
T Consensus 312 D~~~~~~~~~-~------------r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~~~~ 377 (415)
T PRK09664 312 DLFKIDNSHG-G------------RFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKKFPN 377 (415)
T ss_pred HHhCCCCccc-c------------ceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCC
Confidence 9874433211 0 123345677889999999996 89999999986 5788889999999999865 21
Q ss_pred c----hhhhhhhhhhHHHHHHHHHH
Q psy17648 491 S----IQSVAFDCFVIFLGCLFGII 511 (530)
Q Consensus 491 ~----~~~~~~~~~~i~~g~~~~v~ 511 (530)
. +..+..-++.+++|++..+.
T Consensus 378 ~~y~v~GG~~~l~~~~~~g~~ii~~ 402 (415)
T PRK09664 378 QMFTVWGGNLIPAIVILFGITVILC 402 (415)
T ss_pred CCceeeCCHHHHHHHHHHHHHHHHH
Confidence 1 11245555566666665543
No 11
>PRK10483 tryptophan permease; Provisional
Probab=99.93 E-value=7.9e-24 Score=214.31 Aligned_cols=343 Identities=12% Similarity=0.114 Sum_probs=254.3
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
.+++.+.+++.+.+.++.||+|+|++|.+.+..|++ ++++++++|.++.|++.++.|...+.++ ..++..+
T Consensus 7 ~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~--------g~~~~tm 78 (414)
T PRK10483 7 TQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI--------GSSFDTI 78 (414)
T ss_pred ccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCHHHH
Confidence 466788999999999999999999999999999998 7999999999999999999999765432 3499999
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC--ccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG--AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
+|+.+|| .++.+.++++.+..+..+++|+.-.++.+++.+++. +.+...-.+++.++.-.+.+. ..+...+++-+.
T Consensus 79 a~~~LG~-~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~-gt~~vd~~n~~l 156 (414)
T PRK10483 79 TKDLLGK-GWNVVNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL-STKAVSRMTAIV 156 (414)
T ss_pred HHHHcCh-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence 9999999 589999999999999999999999999998887643 334444444554444444443 345555565555
Q ss_pred HHHHHHHHHhheeeeeeecCccCCccc-----cccccccchhHHHHHhhhhcccceeccccccccc-CccchhhHHHHHH
Q psy17648 276 TMSHIVINVVILGYCLLQIGDWGWGKV-----KWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLI-DRSKFDWMLDWSH 349 (530)
Q Consensus 276 ~~~~~~~~~iii~~~~~~~~~~~~~~~-----~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~-~p~~~~~~i~~s~ 349 (530)
...+++..++++..... +.+.++. .....+.....+++++++||+.|+.+|++.++++ |++|.+|++..+.
T Consensus 157 ~~~~i~~f~~~~~~l~~---~i~~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~y~~~d~~kir~~I~iGs 233 (414)
T PRK10483 157 LGAKVITFFLTFGSLLG---HVQPATLFNVAESNASYAPYLLMTLPFCLASFGYHGNVPSLMKYYGKDPKTIVKCLVYGT 233 (414)
T ss_pred HHHHHHHHHHHHHHHHh---hcCHHHHhccccccchhHHHHHHHHHHHHhhccCCCcchHHHHHhCcCHHHHHHHHHHHH
Confidence 55444443333322221 2111111 1111233467999999999999999999999987 5677899999999
Q ss_pred HHHHHHHHHHHhHhhhhc-----------cCCchh--hhh-ccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Q psy17648 350 IAAAIFKSMFGYLCFLTF-----------QNDTQQ--VIT-NNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNY 415 (530)
Q Consensus 350 ~~~~~~Y~~~g~~gy~~f-----------G~~~~~--~il-~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 415 (530)
.+..++|++.-.+....- |++... ..+ +..+++....+.+++..+++.+||-.......|.+.+.+
T Consensus 234 ~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~~L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~ 313 (414)
T PRK10483 234 LMALALYTIWLLATMGNIPRPEFIGIAEKGGNIDVLVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLF 313 (414)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988655443322 222211 111 123344567889999999999999999999999999987
Q ss_pred ccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 416 FKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPH-FAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
..+++.+ .|...-.+..+.++++|...|+ |-..+++.|.. ...+..++|+++.++.|++
T Consensus 314 k~~~~~~-------------~r~~~~~ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 314 GFDDSAM-------------GRFKTALLTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred CCCCccc-------------cceeeehhhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence 5433211 0123345677899999999996 89999999976 6777789999999999865
No 12
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.93 E-value=6.2e-24 Score=217.33 Aligned_cols=343 Identities=15% Similarity=0.229 Sum_probs=255.0
Q ss_pred CCccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHH
Q psy17648 121 HKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIAS 199 (530)
Q Consensus 121 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~ 199 (530)
++.+.+++++.+.++.||+|+|++|.+.+..|++ ++++++++|..+.+++.++.|...+.+. ..+|.++++
T Consensus 1 ~~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~--------~~~~~~~a~ 72 (394)
T PF03222_consen 1 KNNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE--------GSSLTSMAE 72 (394)
T ss_pred CCchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--------CCCHHHHHH
Confidence 3467899999999999999999999999999998 6999999999999999999998865432 349999999
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC---ccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648 200 ECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG---AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCT 276 (530)
Q Consensus 200 ~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~---~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 276 (530)
+.+|| .++++.++++.+..+..+++|....++.++++++.. +.+.+.-.+++.++...+... .-+...+++.+.+
T Consensus 73 ~~lG~-~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~~lv 150 (394)
T PF03222_consen 73 KYLGK-KGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINRVLV 150 (394)
T ss_pred HHhCh-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 99999 589999999999999999999999999999887542 334443333333333333322 3445566665555
Q ss_pred HHHHHHHHhheeeeeeecCccCCccccc----cccccchhHHHHHhhhhcccceeccccccccc-CccchhhHHHHHHHH
Q psy17648 277 MSHIVINVVILGYCLLQIGDWGWGKVKW----TLDMENFPISLGVIVFSYTSQIFLPTLEGNLI-DRSKFDWMLDWSHIA 351 (530)
Q Consensus 277 ~~~~~~~~iii~~~~~~~~~~~~~~~~~----~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~-~p~~~~~~i~~s~~~ 351 (530)
..++...+....+.+ |..+.++... ..++.....++++.++||..|+.+|++.+.++ |++|.+|++..+..+
T Consensus 151 ~~~i~~~~~l~~~~~---p~~~~~~L~~~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d~~k~~~ai~~Gs~i 227 (394)
T PF03222_consen 151 FGMIISFIILVVYLI---PHWNPSNLLDAPPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGDPKKIRKAIIIGSLI 227 (394)
T ss_pred HHHHHHHHHHHHHHh---hhcCHHHhhccccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCccHHHHHHHHHHHHHH
Confidence 555544444333333 3333333222 24566678999999999999999999999998 667789999999999
Q ss_pred HHHHHHHHHhHhhh-----------hccCCchh--hhhccC-CCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Q psy17648 352 AAIFKSMFGYLCFL-----------TFQNDTQQ--VITNNF-DSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFK 417 (530)
Q Consensus 352 ~~~~Y~~~g~~gy~-----------~fG~~~~~--~il~~~-~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 417 (530)
..++|++.-..... .-+++..+ ..+.+. .+++...+.+++-.+++.+||-......+|.+.+.+..
T Consensus 228 ~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 228 PLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANVSGSPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999876444322 11212111 233333 34467788999999999999999999999999998744
Q ss_pred CCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCC
Q psy17648 418 GGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPH-FAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSL 490 (530)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~ 490 (530)
+++ + ..|.....+..+.++++|...|+ |...+++.| .....+..++|+++.+|.|+++.
T Consensus 308 ~~~-~------------~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 308 KNN-S------------SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred Ccc-c------------cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHcccC
Confidence 221 1 01233445567778899999995 899999999 88899999999999999876543
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=4.1e-23 Score=210.20 Aligned_cols=361 Identities=15% Similarity=0.214 Sum_probs=258.6
Q ss_pred cHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhh
Q psy17648 124 NEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECF 202 (530)
Q Consensus 124 s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~ 202 (530)
+.+++.+.+.+|.||+|+|++|.+.+..|++ ++++++++|.+..|+++++.|+..+.+ . ..++.+++|+.+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~--~------~~~~~~~a~~~L 75 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVP--A------DTGLGTLAKRYL 75 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--C------CCCHHHHHHHHh
Confidence 6899999999999999999999999999999 699999999999999999999654322 1 348999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC---CccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHH
Q psy17648 203 GPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD---GAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSH 279 (530)
Q Consensus 203 G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~---~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 279 (530)
|| .|+++.++++.+..+..+.+|....++.+...+++ .+.+.....+++.++.....+. ..+...+++-+-+..+
T Consensus 76 G~-~g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L~~~~ 153 (403)
T PRK15132 76 GR-YGQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFLFSAK 153 (403)
T ss_pred Ch-HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHH
Confidence 99 58999999999999999999999977776555432 1334433333333332223322 3355555555544444
Q ss_pred HHHHHhheeeeeeecCccCCccccc-cccccchhHHHHHhhhhcccceeccccccccc-CccchhhHHHHHHHHHHHHHH
Q psy17648 280 IVINVVILGYCLLQIGDWGWGKVKW-TLDMENFPISLGVIVFSYTSQIFLPTLEGNLI-DRSKFDWMLDWSHIAAAIFKS 357 (530)
Q Consensus 280 ~~~~~iii~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~-~p~~~~~~i~~s~~~~~~~Y~ 357 (530)
++..+....+. .|+++.++... +.+..-...+++++++||+.|+.+|++.+.++ |++|.+|++.++..+..++|+
T Consensus 154 ii~~~~~~~~l---~p~~~~~~L~~~~~~~~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~~~~~k~i~~Gs~i~li~yl 230 (403)
T PRK15132 154 IIFLVVMLALM---MPHIHKVNLLTLPLQQGLALSAIPVIFTSFGFHGSVPSIVSYMGGNIRKLRWVFIIGSAIPLVAYI 230 (403)
T ss_pred HHHHHHHHHHH---HHhcCHHHHhcCCccccHHHHHHHHHHHHhhCCcccHHHHHHhCcCHHHHHHHHHHHHHHHHHHHH
Confidence 43333222222 23433333321 11222377999999999999999999999987 556789999999999999998
Q ss_pred HHHhHhhhhccCCc----------hhhhhcc----CCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCC
Q psy17648 358 MFGYLCFLTFQNDT----------QQVITNN----FDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQF 423 (530)
Q Consensus 358 ~~g~~gy~~fG~~~----------~~~il~~----~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~ 423 (530)
+.-..+...-+.+. .++++.. .+.++...+.+++..+++.+||-.......|.+.+.+.++++..
T Consensus 231 ~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~~~~~~- 309 (403)
T PRK15132 231 FWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQRRNTVG- 309 (403)
T ss_pred HHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcccc-
Confidence 87666654433221 1122222 33456778899999999999999999999999999874332110
Q ss_pred CccccCCcchhhHHHHHHHHHHHHHHHHHhhccc-HHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCC-C-chh---hhhh
Q psy17648 424 PSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPH-FAILMGFIGSFTGTMLSFIWPCYFHLKLKGGS-L-SIQ---SVAF 497 (530)
Q Consensus 424 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~-~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~-~-~~~---~~~~ 497 (530)
.|.....+..+.++++|...|+ |...+++.|. ....+.+++|+++.+|.|+++ . +.+ .+..
T Consensus 310 ------------~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~ 376 (403)
T PRK15132 310 ------------GRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPA 376 (403)
T ss_pred ------------CCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhcCCCCCccCCCChHH
Confidence 0234556778899999999995 8889999886 468999999999999988643 1 222 3566
Q ss_pred hhhhHHHHHHHHHH
Q psy17648 498 DCFVIFLGCLFGII 511 (530)
Q Consensus 498 ~~~~i~~g~~~~v~ 511 (530)
.++++++|++..+.
T Consensus 377 ~~~v~~~G~~~i~~ 390 (403)
T PRK15132 377 LALVFLCGIAVIGI 390 (403)
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777776643
No 14
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=6.1e-24 Score=218.99 Aligned_cols=337 Identities=13% Similarity=0.141 Sum_probs=247.0
Q ss_pred HHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhhCchh
Q psy17648 128 AAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVW 206 (530)
Q Consensus 128 ~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~G~~~ 206 (530)
++..+++++||+|+|++|..++..|.. +.+++++.|+++.+++.++.|...+.+ + ..++.+++++++|| +
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p-~-------~~~~~~~~~~~~G~-~ 72 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYP-G-------GASFNTIAKDLLGK-T 72 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-C-------CCCHHHHHHHHhCH-H
Confidence 345678999999999999999888876 678889999999999999998876543 2 34899999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC---ccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHH
Q psy17648 207 GARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG---AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVIN 283 (530)
Q Consensus 207 g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~---~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 283 (530)
+++++++.+++.++..+++|.+..++.+..++++. ..+.....++..+++.++ ..+..+..++++.+.+..++...
T Consensus 73 ~g~~~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~l-~~~G~~~~~~v~~i~~~~~l~~l 151 (381)
T TIGR00837 73 GNIIAGLSLLFVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLIFTVLFGSF-VWLSTSAVDRITRVLIFGKIIAF 151 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH-HHhchhHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999998887776531 223333333333333333 34567888999988888777766
Q ss_pred HhheeeeeeecCccCCccccc-cccccchhHHHHHhhhhcccceeccccccccc-CccchhhHHHHHHHHHHHHHHHHHh
Q psy17648 284 VVILGYCLLQIGDWGWGKVKW-TLDMENFPISLGVIVFSYTSQIFLPTLEGNLI-DRSKFDWMLDWSHIAAAIFKSMFGY 361 (530)
Q Consensus 284 ~iii~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~-~p~~~~~~i~~s~~~~~~~Y~~~g~ 361 (530)
++++..+..+.......+... ..++.++..+++...++|++|..++.+.+|++ +++|.+|++..+..+++++|+++.+
T Consensus 152 ~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~k~i~raii~g~~i~~~lY~l~~~ 231 (381)
T TIGR00837 152 ALVFSGLLPHVKGDLLLDVALDTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNVKKVKKSILIGSAIALVLYILWQL 231 (381)
T ss_pred HHHHHHHHhhccHHHHhcCccccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444433211111111100 12344567889999999998989999999997 5455799999999999999998877
Q ss_pred HhhhhccCCchhh-------------hhc-cCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCccc
Q psy17648 362 LCFLTFQNDTQQV-------------ITN-NFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIW 427 (530)
Q Consensus 362 ~gy~~fG~~~~~~-------------il~-~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (530)
......+.+...+ ... .+++.+...++.++..+++.+++.....+.+|.+.+.+.++++.+
T Consensus 232 ~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~----- 306 (381)
T TIGR00837 232 ATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKK----- 306 (381)
T ss_pred HHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-----
Confidence 6655443322111 111 233445677888999999999999999999999888774432110
Q ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 428 HLDGELKVWGLMFRVAVVLFTIMMAVFIPHFA-ILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 428 ~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~-~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
+ |.....+..+++.++|.+.|+.. ..+++.| +...++.+++|++++++.|++
T Consensus 307 --~------~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~ 359 (381)
T TIGR00837 307 --G------RFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK 359 (381)
T ss_pred --C------CchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 0 13445666688889999999644 8999999 778999999999999998764
No 15
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.92 E-value=3.3e-23 Score=205.96 Aligned_cols=354 Identities=15% Similarity=0.223 Sum_probs=268.3
Q ss_pred cCCCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
.++|.++.++--++-++..||+|. ++...+++.+|.-.++.+++.|++.+.-++.+.|...+ +|++| ++.+
T Consensus 10 ~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~-~p~~g-------SF~~ 81 (462)
T COG1113 10 GLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVA-NPVSG-------SFSD 81 (462)
T ss_pred hhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCC-------cHHH
Confidence 478999999999999999999999 57889999999855888999999999999999986653 45443 9999
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHH--HHHHHHhhhhcccchhh----hH
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMML--IGIFLIPLGFLKSLHHV----SM 270 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~l~~l----~~ 270 (530)
++++.+|+ |..++.++.+++....++++.++.++.+++.|+|+. +...+.++ ..+....|..+|...++ +.
T Consensus 82 ~a~~~lG~-~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~v--P~Wv~al~~~~l~~~~NL~sVk~FGE~EfWfAl 158 (462)
T COG1113 82 YARKYLGP-WAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPDV--PQWVFALAAVVLLLAVNLISVKVFGELEFWFAL 158 (462)
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999 789999999999999999999999999999999975 34444333 33444556666766665 33
Q ss_pred HHHHHHHHHHHHHHhheeeeeeecC-ccCCcccc-----ccccccchhHHHHHhhhhcccceecccccccccCccc-hhh
Q psy17648 271 LSFWCTMSHIVINVVILGYCLLQIG-DWGWGKVK-----WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDW 343 (530)
Q Consensus 271 ~s~~~~~~~~~~~~iii~~~~~~~~-~~~~~~~~-----~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~ 343 (530)
+.+...+..++.-+..+..++.... ..+.++.. .+..+.++..++-+.+|||.|.+.+-...+|-|||+| .||
T Consensus 159 IKV~aIi~~Iv~G~~ll~~g~~~~~~~~g~snl~~hGGffP~G~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~k~ipk 238 (462)
T COG1113 159 IKVAAIIAFIVVGIVLLFGGFGGGGGAAGFSNLWDHGGFFPNGFLGFLSALQIVMFAFGGIELVGITAAEAKDPEKAIPK 238 (462)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCCccccccccCCCcCCCchHHHHHHHHHHHHHHhhHHHHHHHHHhhcChhhHHHH
Confidence 3333333333332322222222221 12333322 1224566789999999999999999999999999999 589
Q ss_pred HHHHHHHHHHHHH-----HHHHhHhhhhccCCchh--hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 344 MLDWSHIAAAIFK-----SMFGYLCFLTFQNDTQQ--VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 344 ~i~~s~~~~~~~Y-----~~~g~~gy~~fG~~~~~--~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
+++.-.....++| +++.+..|-.++++.++ .++..+.-+....++|+.+..+.+++.+-.+|...|++..+-.
T Consensus 239 Ain~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f~~iGi~~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~ 318 (462)
T COG1113 239 AINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVFSLIGIPFAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAK 318 (462)
T ss_pred HHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHHHHcCCcccccceeEEEeechhhcccccccccchHHHHHhh
Confidence 9888888888888 44566667666665444 4555666667788999999999999999999999999988653
Q ss_pred cCCCCCCCcccc--CCcchhhHHHHHHHHHHHHHHHHHhhccc--HHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 417 KGGDSQFPSIWH--LDGELKVWGLMFRVAVVLFTIMMAVFIPH--FAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 417 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
+ ++.|+... .++..|+..++.+.+..+++.++....|. |..+.+. +.......+.+-.+.|+|+||
T Consensus 319 ~---g~APk~~~klsk~gVP~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~--s~~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 319 Q---GDAPKAFAKLSKRGVPVNAILLSAVVLLLGVVLNYILPEKVFELVTSS--SGLGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred c---CcccHhHhhccccCCCHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHh
Confidence 3 33343322 24567888899999999999999999993 7777777 444567888888899999887
No 16
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.88 E-value=1.5e-19 Score=182.93 Aligned_cols=372 Identities=15% Similarity=0.144 Sum_probs=257.6
Q ss_pred HHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhhCc
Q psy17648 126 WQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGP 204 (530)
Q Consensus 126 ~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~G~ 204 (530)
..-...+.++.||+|+|+||-.....|++ .+++++++|.+++|+.+.+.|......+ . ..++.+++++.|||
T Consensus 22 ~~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~-~------~~~i~~v~~~~lG~ 94 (443)
T PRK13629 22 TTWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN-P------SGNITETVEEHFGK 94 (443)
T ss_pred chHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-C------CCCHHHHHHHHcCh
Confidence 33448999999999999999999999999 6999999999999999999987654322 1 34999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC---C-ccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHH
Q psy17648 205 VWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD---G-AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHI 280 (530)
Q Consensus 205 ~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~---~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 280 (530)
+ ++.+.++++++..+..+.+|...+.+.+.+++.+ . ..++....+++.+++..... ..-+.+-+++-+-...++
T Consensus 95 ~-g~~i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql~~~~~~r~l~slifv~~l~~iv~-~G~~~v~kv~~~Lv~~~i 172 (443)
T PRK13629 95 T-GGVVITFLYFFAICPLLWIYGVTITNTFMTFWENQLGFAPLNRGFVALFLLLLMAFVIW-FGKDLMVKVMSYLVWPFI 172 (443)
T ss_pred h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcCCccHHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 5 7899999999999999999999998888775322 1 23333333333333333332 234555555555554444
Q ss_pred HHHHhheeeeeeecCccCCccccc-c----ccc------cchhHHHHHhhhhcccceeccccccc----cc-----C--c
Q psy17648 281 VINVVILGYCLLQIGDWGWGKVKW-T----LDM------ENFPISLGVIVFSYTSQIFLPTLEGN----LI-----D--R 338 (530)
Q Consensus 281 ~~~~iii~~~~~~~~~~~~~~~~~-~----~~~------~~~~~a~~~~~faf~~~~~i~~i~~e----m~-----~--p 338 (530)
...+....+. .|+++.++... + .+. ..+..++++++|||+.|+.+|++... .+ | +
T Consensus 173 ~~l~~l~~~L---iP~w~~~~L~~~~~~~~~~~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~ 249 (443)
T PRK13629 173 ASLVLISLSL---IPYWNSAVIDQVDLGSLSLTGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTE 249 (443)
T ss_pred HHHHHHHHHH---HHHcCHHHHhcCccccccccccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHH
Confidence 4444333333 33333322211 0 011 13668999999999999999999887 43 3 4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHhhhhccCCc-----------hhhhhccCCC---------chHHHHHHHHHHHHHHH
Q psy17648 339 SKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDT-----------QQVITNNFDS---------AWFRGFVNFFLVVKALL 398 (530)
Q Consensus 339 ~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~-----------~~~il~~~~~---------~~~~~i~~~~~~i~~~~ 398 (530)
+|.+|++.++..+..++|+++-+.+...-+.+. .+...+.+++ +....+.+++..+++.+
T Consensus 250 ~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~T 329 (443)
T PRK13629 250 RKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFK 329 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHH
Confidence 456789999999999999888777665443221 1112222333 44677888899999999
Q ss_pred hccchhhhHHHHHHHhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhh
Q psy17648 399 SYPLPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWP 478 (530)
Q Consensus 399 s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P 478 (530)
||-.+...++|.+.....+... +.++. +. ..+..+.+...++.+.+++++..-|++-.++.-+|+-...++.|++|
T Consensus 330 SFlGv~LGl~E~l~gl~~~~~~-~~~~~-~~--~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P 405 (443)
T PRK13629 330 SFFGHYLGTLEGLNGLILKFGY-KGDKT-KV--SLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLP 405 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh-hcccc-cc--CHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHH
Confidence 9999999999999887743110 00100 01 11233456667888899999999999999999888888899999999
Q ss_pred hhhHHhhcCCCCchh-hhhhhhhhHHHHHHHHHHHHHH
Q psy17648 479 CYFHLKLKGGSLSIQ-SVAFDCFVIFLGCLFGIIGVYD 515 (530)
Q Consensus 479 ~l~~l~~~~~~~~~~-~~~~~~~~i~~g~~~~v~g~y~ 515 (530)
....+|.- ..++. .+..+++++++|++......|.
T Consensus 406 ~y~i~kvp--~l~~yr~~~~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 406 MYAIRKAP--SLAKYRGRLDNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HHHHHccH--HHHHhCCCchhHHHHHHHHHHHHHHHHh
Confidence 98888762 22222 2345788999998887665553
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.86 E-value=8.9e-19 Score=183.94 Aligned_cols=355 Identities=11% Similarity=0.058 Sum_probs=209.3
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
++|+.+.++.+...++++||+|++.+|..+++.|..+++.+++.+++.......+.|... ..|++|+ .| ...
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~~~~~w~i~~~~~~~~a~~~aeL~~-~~P~~GG------~y-~y~ 75 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTISILSWLVTAVGSMALAYAFAKCGM-FSRKSGG------MG-GYA 75 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhh-hCCCCCc------hH-HHH
Confidence 567899999999999999999999999888888864455555555555444433333222 1244453 34 455
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhh--hcccchhhhHHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLG--FLKSLHHVSMLSFWCT 276 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~--~~~~l~~l~~~s~~~~ 276 (530)
++.+||. ..++..+..++..............+++..+++.. .+.....++..++++.+. -.+..+..++++.+.+
T Consensus 76 ~~~~G~~-~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~ln~~g~~~~~~i~~i~~ 153 (438)
T PRK10655 76 EYAFGKS-GNFMANYTYGVSLLIANVAIAISAVGYGTELFGAT-LSPVQICLATIGVLWLCTVANFGGARITGQISSVTV 153 (438)
T ss_pred HHHcCcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHH
Confidence 6699995 45677776666555444444444445555666531 111112222222222222 2346777777777766
Q ss_pred HHHHHHHHhheeeeeeecCccCCcccccccc---ccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHHHHHHH
Q psy17648 277 MSHIVINVVILGYCLLQIGDWGWGKVKWTLD---MENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDWSHIAA 352 (530)
Q Consensus 277 ~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~s~~~~ 352 (530)
+.++..+++++..+..........+...+.+ +.++..++....|+|.|++....+.+|+|||+| .||++..+..++
T Consensus 154 ~~~l~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iPrAi~~~~~~~ 233 (438)
T PRK10655 154 WGVIIPVVGLSIIGWFWFSPSLYVAAWNPHHLPFFSAVGSSIAMTLWAFLGLESACANSDAVENPERNVPIAVLGGTLGA 233 (438)
T ss_pred HHHHHHHHHHHHHHHHHhCcccccCCcCccCCchHHHHHHHHHHHHHHHhhhhhhhhhHHHhhCccccccHHHHHHHHHH
Confidence 5554444333222211111101111000111 234556778899999999999999999999998 699999999999
Q ss_pred HHHHHHHHhHhhhhccCCc-------hhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCc
Q psy17648 353 AIFKSMFGYLCFLTFQNDT-------QQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPS 425 (530)
Q Consensus 353 ~~~Y~~~g~~gy~~fG~~~-------~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~ 425 (530)
.++|++.........+++. ......+.-.++...++.++..++.+.+.....+...|.+... .|++.+|+
T Consensus 234 ~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~~~~~is~~~~~~~~~~~~sR~~~~~---a~dg~lP~ 310 (438)
T PRK10655 234 AVIYIVSTNVIAGIVPNMELANSTAPFGLAFAQMFNPTVGKIVMALMVMSCCGSLLGWQFTIAQVFKSS---ADEGYFPK 310 (438)
T ss_pred HHHHHHHHHHHHhCCCHHHHhhccchHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCchhH
Confidence 9999887655433222110 0111222222344566777777888888888888888887443 44555665
Q ss_pred cccC--CcchhhHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 426 IWHL--DGELKVWGLMFRVAVVLFTIMMAVF---IPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 426 ~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~---ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
.+.+ ++++|...+++..++..+..++... ...++.++++.+ ....+.|.++++.++++|++
T Consensus 311 ~~~~v~~~~tP~~all~~~~i~~~l~l~~~~~~~~~~~~~l~~~~~--~~~~i~y~~~~~~~~~lr~~ 376 (438)
T PRK10655 311 IFSRVTKVDAPVQGMLIIVVIQSLLSLMTISPSLNSQFNVLVNLAV--VTNIIPYILSMAALVIIQKV 376 (438)
T ss_pred HHHhhCcCCCCHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhh
Confidence 4221 3466776666555443322222111 125777777733 34567888888777766543
No 18
>PRK15049 L-asparagine permease; Provisional
Probab=99.86 E-value=5.7e-19 Score=187.45 Aligned_cols=353 Identities=14% Similarity=0.171 Sum_probs=221.7
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLPF-AVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
+++|+++.++..+..++.+||+|++..|. +++.+|..+++.+++.+++....+..+.|..... |++| ....
T Consensus 25 ~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~~il~~li~~i~~~~v~~slaELas~~-P~aG-------g~y~ 96 (499)
T PRK15049 25 GYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPALALVYLICGLFSFFILRALGELVLHR-PSSG-------SFVS 96 (499)
T ss_pred hhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-------CHHH
Confidence 37889999999999999999999988885 6888897556666666666666665555544332 4444 5666
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-ccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG-AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~-~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
.+++.+||. ..+++.+..++.....+.......+..+..+ +.. ..+...+.++. .+++-+.-....|...+++.+.
T Consensus 97 y~~~~~G~~-~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~~-~~l~~~iN~~gvk~~~~i~~~~ 173 (499)
T PRK15049 97 YAREFLGEK-AAYVAGWMYFINWAMTGIVDITAVALYMHYW-GAFGGVPQWVFALAA-LTIVGTMNMIGVKWFAEMEFWF 173 (499)
T ss_pred HHHHHhCcH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCCCCcHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 777899995 5677777777765444444444444444322 111 12222222221 2222222234677777777776
Q ss_pred HHHHHHHHHhheeeeee----ecCc-c---CCcccc-----ccccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 276 TMSHIVINVVILGYCLL----QIGD-W---GWGKVK-----WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 276 ~~~~~~~~~iii~~~~~----~~~~-~---~~~~~~-----~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
.+.+++.++.+++.++. ..+. . ++.+.. ++..+..+..++...+|+|.|.+.+....+|+|||+| .
T Consensus 174 ~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~~~~~~p~g~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~r~i 253 (499)
T PRK15049 174 ALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITDNGGFFPHGLLPALVLIQGVVFAFASIEMVGTAAGECKDPQTMV 253 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccCCCCcccccHHHHHHHHHHHHHHHhhHHHHHHHHHHhcChhhHH
Confidence 65554443332222111 0110 0 010000 0111222345566799999999999999999999998 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccCC-c---hh---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQND-T---QQ---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETN 414 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~-~---~~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~ 414 (530)
||++..++..+.++|++.........+.+ . .+ .+......++...++++++.++++.+.+..++...|+++..
T Consensus 254 PrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ss~ns~~~~~sR~l~a~ 333 (499)
T PRK15049 254 PKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAALSSLNSGLYCTGRILRSM 333 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987765543322211 1 11 22333444456678888899999999999999999999775
Q ss_pred hccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 415 YFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIP--HFAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 415 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
- |++..|+. .+ ++++|...+++..++.++..++....| .++.++++ +.....+.|+++++.++++||
T Consensus 334 A---rdg~lP~~f~kv~-k~~~P~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~--~~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 334 A---MGGSAPSFMAKMS-RQHVPYAGILATLVVYVVGVFLNYLVPSRVFEIVLNF--ASLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred H---hcCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 3 34555543 33 456787777776666555544544444 37778888 455678889999988888765
No 19
>PRK10249 phenylalanine transporter; Provisional
Probab=99.85 E-value=9.7e-19 Score=184.22 Aligned_cols=352 Identities=17% Similarity=0.225 Sum_probs=227.4
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhH-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLP-FAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
+.+|+.+.++..+..++.+||+|++..| .+++++|...++.+++.+++....+..+.|..... |++| +...
T Consensus 18 ~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li~~~~~~~~~~~~aEl~~~~-P~~G-------g~~~ 89 (458)
T PRK10249 18 TLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPAVLLGYGVAGIIAFLIMRQLGEMVVEE-PVSG-------SFAH 89 (458)
T ss_pred hhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-------CHHH
Confidence 4789999999999999999999999888 45778886556666777776666665555544332 4444 5666
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCT 276 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 276 (530)
.+++.+|+. ..+++.+..++.......+.....+.+++.++++. +...+.++... ++-+.-.+.++..++++.+.+
T Consensus 90 y~~~~~g~~-~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~~-l~~~lN~~gv~~~~~i~~~~~ 165 (458)
T PRK10249 90 FAYKYWGPF-AGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPDV--PTWIWAAAFFI-IINAVNLVNVRLYGETEFWFA 165 (458)
T ss_pred HHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcC--cHHHHHHHHHH-HHHHHHHhcchhhhhHHHHHH
Confidence 788899995 56777777777766666677777777777666542 22222222211 122222346777777766665
Q ss_pred HHHHHHHHhheeeee------eecCccCCcccc-----ccccccchhHHHHHhhhhcccceecccccccccCccc-hhhH
Q psy17648 277 MSHIVINVVILGYCL------LQIGDWGWGKVK-----WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWM 344 (530)
Q Consensus 277 ~~~~~~~~iii~~~~------~~~~~~~~~~~~-----~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~ 344 (530)
+.++..++++++.++ ...+..+.++.. .+.++.++..++....|+|.|.+.+....+|+|||+| .||+
T Consensus 166 ~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~a~E~~~P~k~iPra 245 (458)
T PRK10249 166 LIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFATGWNGLILSLAVIMFSFGGLELIGITAAEARDPEKSIPKA 245 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCCCcHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCHhhHHHHH
Confidence 554433322211111 000111111110 1123445678899999999999999999999999998 5999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccCCc----hh---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Q psy17648 345 LDWSHIAAAIFKSMFGYLCFLTFQNDT----QQ---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFK 417 (530)
Q Consensus 345 i~~s~~~~~~~Y~~~g~~gy~~fG~~~----~~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 417 (530)
+..+...+.++|++..+......++.. .+ .+..+...++...++.++..++.+.+.+..++...|.++..
T Consensus 246 i~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~sR~l~a~--- 322 (458)
T PRK10249 246 VNQVVYRILLFYIGSLVVLLALYPWVEVKSNSSPFVMIFHNLDSNVVASALNFVILVASLSVYNSGVYSNSRMLFGL--- 322 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHheeccccccCccCCcHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 999999999999876554433322211 01 12223333455667777888888888888899999999664
Q ss_pred CCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 418 GGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIP--HFAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 418 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
.|++..|+. .+ ++++|...+++..++..+..++....| .++.++++ +.....+.|++|++.+++.||
T Consensus 323 ardg~lP~~~~kv~-~~~~P~~All~~~~i~~l~~l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l~~r~ 394 (458)
T PRK10249 323 SVQGNAPKFLTRVS-RRGVPINSLMLSGAITSLVVLINYLLPQKAFGLLMAL--VVATLLLNWIMICLAHLRFRA 394 (458)
T ss_pred hcCCCcCHHHHHhC-CCCCCHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Confidence 345556644 23 346687777777766665555544444 36667776 334567899999999988763
No 20
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.85 E-value=2.4e-18 Score=175.04 Aligned_cols=357 Identities=13% Similarity=0.173 Sum_probs=264.6
Q ss_pred cCCCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
+.+|+++.++..++-++..||+|+ ++...+++++|..| ++..+++|...+..+.-|.|....++ .+| +|.
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG-------sF~ 112 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG-------SFS 112 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC-------chh
Confidence 588999999999999999999999 57889999999996 88899999999999988888776655 544 899
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHH--hhhhcccchhh----h
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLI--PLGFLKSLHHV----S 269 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~--pl~~~~~l~~l----~ 269 (530)
.++.+..+|- ..+.+.+.+++....++...++.++..++-|+|+. .+...|..++.++++ .+.-.|...+. +
T Consensus 113 ~ya~rfvdpa-~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~~-v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s 190 (541)
T COG0833 113 TYATRFVDPA-FGFALGWNYWLNWAVTLPLELTAASLVIQYWFPDT-VPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFS 190 (541)
T ss_pred hhhhhhcCch-HHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCCC-CChHHHHHHHHHHHHHHHHhcccccceehHHHH
Confidence 9999999995 46889999999999999999999999999999775 677788777655444 44455666554 4
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeecCccCCc----cccccccccchhHHHHHhhhhcccceecccccccccCccc-hhhH
Q psy17648 270 MLSFWCTMSHIVINVVILGYCLLQIGDWGWG----KVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWM 344 (530)
Q Consensus 270 ~~s~~~~~~~~~~~~iii~~~~~~~~~~~~~----~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~ 344 (530)
.+.++.++..++..++++..+....+..+.+ +-....++.++...+-+..|||.|.+.+--...|-+||+| .||+
T Consensus 191 ~iKV~~ii~Fii~gii~~~Gg~~~~~~ig~~yw~~pg~F~~gf~g~~~v~v~a~Fsf~GtElvgiaAgEs~nP~K~iPkA 270 (541)
T COG0833 191 SIKVLTIIGFIILGIIIICGGGPTHGYIGFNYWHDPGAFAGGFKGFCSVFVIAAFSFSGTELVGLAAGESENPRKSIPKA 270 (541)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCcceeeecCCCCCCcchHHHHHHHhhheeeeeceeeeeeeecccCCchhhhHHH
Confidence 5555555554444444444443331222211 1112234556778888899999999999999999999999 6999
Q ss_pred HHHHHHHHHHHHHHHHhH-hhh-hccC------C----chhh---hhccCCCchHHHHHHHHHHHHHHHhccchhhhHHH
Q psy17648 345 LDWSHIAAAIFKSMFGYL-CFL-TFQN------D----TQQV---ITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACE 409 (530)
Q Consensus 345 i~~s~~~~~~~Y~~~g~~-gy~-~fG~------~----~~~~---il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~ 409 (530)
+.-....+.++|++.-++ |.+ -|.| + ..++ ++.|..-..+..++|..+.++++++-+-.+|...|
T Consensus 271 ik~vfwRIl~FYi~si~~ig~lvPy~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imNaVIL~svlSa~NS~lYasSR 350 (541)
T COG0833 271 IKQVFWRILLFYILSIFVIGLLVPYNDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMNAVILTSVLSAANSGLYASSR 350 (541)
T ss_pred HHHHHHHHHHHHHHHHHHheEEccCCCcccccCCcCCccCCChhHhHHhcCCccchHHHHHHHHHHHHHHhhccchHHHH
Confidence 999999999999665332 221 1222 1 1122 22333333567899999999999999999999999
Q ss_pred HHHHhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 410 LLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIP--HFAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
+++.+-..+..+++-...+ ++..|+.+++++.++.+++++-+..-. .++-++++.|. +.+++++--++.|+|.||
T Consensus 351 ~L~sLA~~g~APk~f~~~~-r~GvP~~al~vt~~fg~lafl~~~~~~~~vf~wL~~isg~--s~~i~W~~I~~shirFR~ 427 (541)
T COG0833 351 MLYSLAKQGKAPKIFAKVD-RRGVPLVALLVTLLFGLLAFLNSSFKETTVFNWLLNISGL--SGFIAWGSICLSHIRFRR 427 (541)
T ss_pred HHHHHHhcCCCchHHHhhC-CCCCchHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 9988765444333322222 345688888888888888888877633 47888888654 357888888999998875
No 21
>PRK10746 putative transport protein YifK; Provisional
Probab=99.85 E-value=2.2e-18 Score=181.53 Aligned_cols=356 Identities=13% Similarity=0.149 Sum_probs=228.8
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccchhH-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIVSLP-FAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
++.+|+.+.++..+..++++||+|++..| .+++.+|...++.+++.+++....+..+.|..... |++| ++.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~~~l~~~i~g~~~~~v~~~~aEl~~~~-P~sG-------g~~ 77 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPSVLLAYIIAGLFVFFIMRSMGEMLFLE-PVTG-------SFA 77 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-------CHH
Confidence 34788999999999999999999998877 56888897446666777776666665555544332 4444 677
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
+.+++.+||. ..+.+.+..++.....+.......+.+++.++|+ .+...+.++..+++.. .-...++..+.++.+.
T Consensus 78 ~y~~~~~g~~-~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~--~~~~~~~~~~~~~~~~-lN~~gv~~~~~~e~~~ 153 (461)
T PRK10746 78 VYAHRYMSPF-FGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE--MAQWIPALIAVALVAL-ANLAAVRLYGEIEFWF 153 (461)
T ss_pred HHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--CchHHHHHHHHHHHHH-HHHHhHHHHHHHHHHH
Confidence 7888899995 5578888888877777777777778888877764 2333333332222221 2223566666666555
Q ss_pred HHHHHHHHHhheee-------eeeec-CccCCccccc-----cccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 276 TMSHIVINVVILGY-------CLLQI-GDWGWGKVKW-----TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 276 ~~~~~~~~~iii~~-------~~~~~-~~~~~~~~~~-----~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
+..++..+++++.. +.... ...++++... +.++.++..++....|+|.|.+.+....+|+|||+| .
T Consensus 154 ~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~~faf~G~e~v~~~a~E~knP~k~i 233 (461)
T PRK10746 154 AMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEHGGFFAGGWKGFLTALCIVVASYQGVELIGITAGEAKNPQVTL 233 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhcCHHHHHHHHHHhcChhhHH
Confidence 54443333222111 11000 0011121111 112445678999999999999999999999999998 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccCCch----h---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQ----Q---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETN 414 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~----~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~ 414 (530)
||++..+...+.++|++..+........+.. + ....+...+....++++++.++++.+.+..++..+|.++..
T Consensus 234 P~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~~s~~n~~~~~~sR~l~~~ 313 (461)
T PRK10746 234 RSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAALSGCNSGMYSCGRMLYAL 313 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765443333222111 1 12233333345677888888999999999999999999765
Q ss_pred hccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH--hHhhhhHHHhhhhhhHHhhcCC
Q psy17648 415 YFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIG--SFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 415 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~G--a~~~~~~~~i~P~l~~l~~~~~ 488 (530)
- +++..|.. .+ ++++|+..+++..+..++...+....|+-+.+++.+. +.....+.|+++++.++|+||+
T Consensus 314 a---~~g~lP~~~~~~~-~~g~P~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 314 A---KNRQLPAAMAKVS-RHGVPVAGVAVSILILLVGSCLNYIIPNPQRVFVYVYSASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred H---hCCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 34555543 23 4567877777665555555555555554444333333 2333578888999888888764
No 22
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.84 E-value=3.3e-19 Score=182.14 Aligned_cols=363 Identities=16% Similarity=0.190 Sum_probs=252.2
Q ss_pred HHHHHHHHhhhhccccchhHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhhCc
Q psy17648 126 WQAAWNVTNAIQGMFIVSLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGP 204 (530)
Q Consensus 126 ~~~~~~l~~~~iG~GiL~lP~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~G~ 204 (530)
..-.+.+.++++|+|+|.+|....+.||++ ++..++.+.+.+++..++.|...... .. ..++.+++++.|||
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~-~p------~~~i~~~~~~~fGk 78 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSK-NP------CEDITEVVEEHFGK 78 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC------CCCHHHHHHHHcCH
Confidence 556788999999999999999999999995 77777777787888888887743321 11 34999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC---ccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHH
Q psy17648 205 VWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG---AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIV 281 (530)
Q Consensus 205 ~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~---~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 281 (530)
+++.+.++.+++..+..+.+|....++.+..++.+. +.+.+....+..++++-.......+.+.+++.+.....++
T Consensus 79 -~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~~~ii 157 (397)
T TIGR00814 79 -NWGILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGTAPPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVFPLVL 157 (397)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHH
Confidence 688999999999999999999988888776665431 1223322223333333333445778888888777755555
Q ss_pred HHHhheeeeeeecCccCCccccccc----cccchhHHHHHhhhhcccceeccccc----ccccC----ccchhhHHHHHH
Q psy17648 282 INVVILGYCLLQIGDWGWGKVKWTL----DMENFPISLGVIVFSYTSQIFLPTLE----GNLID----RSKFDWMLDWSH 349 (530)
Q Consensus 282 ~~~iii~~~~~~~~~~~~~~~~~~~----~~~~~~~a~~~~~faf~~~~~i~~i~----~em~~----p~~~~~~i~~s~ 349 (530)
..+++..+.+ |+.+.++....+ .+.++..+++..+|||.+|+.+++.. +|.+| ++|.+|++..+.
T Consensus 158 ~l~~l~~~li---p~~~~~~L~~~p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~ 234 (397)
T TIGR00814 158 ILVLLSLYLI---PHWNGANLTTFPSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGAS 234 (397)
T ss_pred HHHHHHHHHH---HHcCHHHHhcCCcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHH
Confidence 5444444333 333333332111 23457799999999999999999997 44543 345678999999
Q ss_pred HHHHHHHHHHHhHhhhhccCCchh-------hhhc----cCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccC
Q psy17648 350 IAAAIFKSMFGYLCFLTFQNDTQQ-------VITN----NFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKG 418 (530)
Q Consensus 350 ~~~~~~Y~~~g~~gy~~fG~~~~~-------~il~----~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 418 (530)
.+..++|+..-+.+....+.+... +.+. ..+.+....+.+++-.+++..|+-.+.+.+++.+.+.+.+.
T Consensus 235 ~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~ 314 (397)
T TIGR00814 235 LILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNS 314 (397)
T ss_pred HHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 999999988777766655433211 1122 33445677888888899999999999999999999877332
Q ss_pred CCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCCchhh-hhh
Q psy17648 419 GDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQS-VAF 497 (530)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~-~~~ 497 (530)
++. +++ +.+.+....+...++.+.+++++..-|++-.++.-+|+-...++.|++|.....|. +..++.+ +..
T Consensus 315 ~~~--~~~---~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v--~~l~~~~~~~~ 387 (397)
T TIGR00814 315 LKM--KGK---KINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV--PALKKYRGRIS 387 (397)
T ss_pred hcc--ccc---ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc--HHHHHhCCCcc
Confidence 211 100 01112233556667788899999999999999998888888999999999888776 2222222 345
Q ss_pred hhhhHHHHH
Q psy17648 498 DCFVIFLGC 506 (530)
Q Consensus 498 ~~~~i~~g~ 506 (530)
+++++++|+
T Consensus 388 ~~fv~~~g~ 396 (397)
T TIGR00814 388 NVFVTVIGL 396 (397)
T ss_pred hheeEeeec
Confidence 666666554
No 23
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.84 E-value=1.4e-18 Score=185.49 Aligned_cols=363 Identities=12% Similarity=0.123 Sum_probs=211.8
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccchhHHH-HHhccHHH--HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCC
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIVSLPFA-VLRGGYWA--IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNS 193 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~g--ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~ 193 (530)
++++|+.+.++.+...+++++|+|++..|.. ++++|..+ ++.+++.+++....+....|..... |++|+ .
T Consensus 38 ~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~-P~sGG------~ 110 (501)
T TIGR00911 38 VALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTI-PKSGG------E 110 (501)
T ss_pred cccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCc------h
Confidence 4588999999999999999999999999865 67777543 3444555555555554444443332 45553 4
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHH-HHHHHHHHHHHHHHhh-hcccCCCCccchhHHHHHHHHHHHhhhh--cccchhhh
Q psy17648 194 YVSIASECFGPVWGARAVNLAQMI-ELLMTCILYVVVCGDL-MVGSFPDGAIDTRSWMMLIGIFLIPLGF--LKSLHHVS 269 (530)
Q Consensus 194 y~~l~~~~~G~~~g~~~~~i~~~i-~~~~~~~~y~i~~~~~-l~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~l~ 269 (530)
|.. .++.+||.++. +..+..++ ...+.+..+....+++ ++.++++...+.....++..++++.+.. ...++...
T Consensus 111 y~~-~~~~~g~~~gf-~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~~~~~~~~~~~i~~~~i~~~~~ln~~Gvk~~~ 188 (501)
T TIGR00911 111 YNY-ILEVFGPLLAF-LRLWIELLVIRPGSQAVNALNFAIYILTPVFPDCEVPEWAIRLVAVLCVLLLTLVNCLSVKWAT 188 (501)
T ss_pred hhh-HHhHhCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 444 45589996554 44443332 2233344444444444 3445554333222222232222333333 34778888
Q ss_pred HHHHHHHHHHHHHHHhheeeeeeecCccCCccc--c--c---cccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 270 MLSFWCTMSHIVINVVILGYCLLQIGDWGWGKV--K--W---TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 270 ~~s~~~~~~~~~~~~iii~~~~~~~~~~~~~~~--~--~---~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
+++.+.++.++..++++++.++......+.++. . . ..+..++..++....|+|.|++.+..+.+|+|||+| .
T Consensus 189 ~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~r~i 268 (501)
T TIGR00911 189 RVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKNAFEGTETSAGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPYRTL 268 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCcccccCCCCCcHHHHHHHHHHHHHHHHhHHHHhhhHHHhcCchhhh
Confidence 888887777666544433333221111111000 0 0 012345667889999999999999999999999988 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccCCch---hhhhccCCC---chHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQ---QVITNNFDS---AWFRGFVNFFLVVKALLSYPLPYYAACELLETNY 415 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~---~~il~~~~~---~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 415 (530)
||++..+..++.++|+++.+......+.+.. +.....+.. .+...++.++..++.+.+....++...|.+...-
T Consensus 269 PrAi~~s~~~v~~~Y~l~~~a~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~i~~~~~is~~~~~~~~~~~~sR~l~a~a 348 (501)
T TIGR00911 269 PIAIIISMPIVTFIYVLTNIAYFTVLSPEELLASLAVAVDFGERLLGVMSWAMPALVGLSCFGSVNGSLFSSSRLFFVGG 348 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHhcChHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987665433322110 000000000 1234566677778888888889999999996653
Q ss_pred ccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCCch
Q psy17648 416 FKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSI 492 (530)
Q Consensus 416 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~ 492 (530)
|++..|.. .|.+.+.|+..+++..++.++ .....++..++++.+............+++.+|.++++.+|
T Consensus 349 ---rdg~lP~~~~~v~~~~~~P~~all~~~~i~~l----~~~~~~~~~l~~~~~~~~~i~y~l~~~a~i~lR~~~p~~~r 421 (501)
T TIGR00911 349 ---REGHLPSLLSMIHVKRLTPLPSLLIVCTLTLL----MLFSGDIYSLINLISFANWLFNALAVAGLLWLRYKRPEMNR 421 (501)
T ss_pred ---hcCCccHHHHHhcCCCCCCHHHHHHHHHHHHH----HHccCCHHHHHHHHHHHHHHHHHHHHHHHHheeccCCCCCC
Confidence 34555643 233445676655544333222 22345777777765444443444444455566655555544
Q ss_pred hhh
Q psy17648 493 QSV 495 (530)
Q Consensus 493 ~~~ 495 (530)
+.|
T Consensus 422 p~r 424 (501)
T TIGR00911 422 PIK 424 (501)
T ss_pred Ccc
Confidence 433
No 24
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.83 E-value=8e-18 Score=176.29 Aligned_cols=352 Identities=14% Similarity=0.106 Sum_probs=213.0
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---cCCCCccccCCCH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEID---PNTGQRVRVRNSY 194 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~---~~~g~~~~~~~~y 194 (530)
+++|+.+.++.+...++++||+|++.+|...++.|...+..+++.++.+. .+..|+.|+. |++|+ .|
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~~i~~wli~~~~~l----~~al~~aEL~s~~P~~GG------~y 71 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSIAIWGWIISIIGAM----SLAYVYARLATKNPQQGG------PI 71 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhCCCCCC------hh
Confidence 36788999999999999999999999999988888644555555555444 4445555543 44443 34
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhh--hhcccchhhhHHH
Q psy17648 195 VSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPL--GFLKSLHHVSMLS 272 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl--~~~~~l~~l~~~s 272 (530)
. .+++ +||.+ .+.+.+..++.......++.+....++..++|....+...+ ++..++++.+ ...+..|..++++
T Consensus 72 ~-y~~~-~g~~~-gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~~~~~~~~-~~~~~i~~~~~~ln~~gvk~~~~i~ 147 (435)
T PRK10435 72 A-YAGE-ISPAF-GFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVLNDPIPAG-IACIAIVWVFTFVNMLGGTWVSRLT 147 (435)
T ss_pred H-HHHH-HCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCChHHHH-HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4 4455 79965 46666666654333333443444455666665422111111 1111222222 2334677777777
Q ss_pred HHHHHHHHHHHHhheeeeeeec-Ccc---CCccccccccccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHH
Q psy17648 273 FWCTMSHIVINVVILGYCLLQI-GDW---GWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDW 347 (530)
Q Consensus 273 ~~~~~~~~~~~~iii~~~~~~~-~~~---~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~ 347 (530)
.+.++.+++.++..+..+.... ++. .+++ ..+.+..++..++....|+|.|.+.+....+|+|||+| .||++..
T Consensus 148 ~i~~~~~li~~~~~~i~g~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~r~iPrAi~~ 226 (435)
T PRK10435 148 TIGLVLVLIPVVGTAIVGWHWFDAATYAANWNT-SDTTDGHAIIKSILLCLWAFVGVESAAVSTGMVKNPKRTVPLATML 226 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCHHhhcccccC-CCCchHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCccccccHHHHH
Confidence 7666555443332222221111 110 1100 01123446778889999999999999999999999987 6999999
Q ss_pred HHHHHHHHHHHHHhHhhhhccCCc----h---hhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCC
Q psy17648 348 SHIAAAIFKSMFGYLCFLTFQNDT----Q---QVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGD 420 (530)
Q Consensus 348 s~~~~~~~Y~~~g~~gy~~fG~~~----~---~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~ 420 (530)
+..++.++|++..++.......+. . .....+...++...+++++..++++.+.....+...|..... .|+
T Consensus 227 ~~~iv~ilYil~~~~~~~~~p~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~i~~l~~~~~~~~~~~r~~~~~---ard 303 (435)
T PRK10435 227 GTGLAGIIYIAATQVISGMFPASVMAASGAPFAISASTILGNWAAPLVSAFTAFACLTSLGSWMMLVGQAGVRA---AND 303 (435)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHhcCCCcHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhC
Confidence 999999999988776543332110 1 112222333355667777778888888888888888887653 345
Q ss_pred CCCCcc---ccCCcchhhHHHHHHHHHHHH-HHHHHhh-------cccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCC
Q psy17648 421 SQFPSI---WHLDGELKVWGLMFRVAVVLF-TIMMAVF-------IPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGS 489 (530)
Q Consensus 421 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~ia~~-------ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~ 489 (530)
+.+|+. .+ ++++|...+++..++..+ ..++... ...++.++++ +.....+.|++.++.++|.++++
T Consensus 304 G~lP~~f~k~n-k~g~P~~Al~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~l~~y~~~~~~~ir~~~~~ 380 (435)
T PRK10435 304 GNFPKVYGEVD-KNGIPKKGLLLAAVKMTALMILITLMNSSGGKASDLFGELTGI--AVLLTMLPYFYSCVDLIRFEGVN 380 (435)
T ss_pred CCccHHHHhhC-cCCCCHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCc
Confidence 566654 23 456677766665443322 2222111 1146777777 44556788888888899887654
Q ss_pred C
Q psy17648 490 L 490 (530)
Q Consensus 490 ~ 490 (530)
.
T Consensus 381 ~ 381 (435)
T PRK10435 381 I 381 (435)
T ss_pred h
Confidence 3
No 25
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.83 E-value=5.6e-18 Score=178.57 Aligned_cols=353 Identities=12% Similarity=0.200 Sum_probs=224.0
Q ss_pred CccCCCCccHHHHHHHHHhhhhccccchhH-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCH
Q psy17648 116 GERSRHKINEWQAAWNVTNAIQGMFIVSLP-FAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSY 194 (530)
Q Consensus 116 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y 194 (530)
+.+++|+.+.++..+..++++||+|++.+| .+++.+|..+++.+++.+++....+..+.|..... |++| .+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~~~i~~~i~~v~~~~~a~~~aEl~s~~-P~~G-------g~ 78 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPAALLAYLLAGLLVVFIMRMLGEMAVAN-PDTG-------SF 78 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-------CH
Confidence 345889999999999999999999999999 56888887555566666666655554444433322 3334 56
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHH-HHHHHhhhhcccchhhhHHHH
Q psy17648 195 VSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLI-GIFLIPLGFLKSLHHVSMLSF 273 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~-~~~~~pl~~~~~l~~l~~~s~ 273 (530)
.+.+++.+||. ..+++.+..++.....+.......+..++.++++. + .|.+.. .++++-+.-....+..++++.
T Consensus 79 ~~~~~~~~g~~-~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~--~~~~~~~~~~~~~~~n~~gv~~~~~~~~ 153 (452)
T TIGR01773 79 STYADDAIGRW-AGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPDI--P--LWLFSLILTIVLTLTNLYSVKSYGEFEF 153 (452)
T ss_pred HHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC--c--HHHHHHHHHHHHHHHHHHhcchhhHHHH
Confidence 67788899994 56788888888777777777777788888777642 2 232211 111122222236677777777
Q ss_pred HHHHHHHHHHHhheeeee----eecCcc---CCcccc----c-cccccchhHHHHHhhhhcccceecccccccccCccc-
Q psy17648 274 WCTMSHIVINVVILGYCL----LQIGDW---GWGKVK----W-TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK- 340 (530)
Q Consensus 274 ~~~~~~~~~~~iii~~~~----~~~~~~---~~~~~~----~-~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~- 340 (530)
+.++.++..++++++.++ ...+.. ++.+.. + +.++.++..++....|+|.|.+....+.+|+|||+|
T Consensus 154 ~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~r~ 233 (452)
T TIGR01773 154 WFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFPNGIGAVLLAILVTMFSFMGTEIVTIAAAESSNPIKS 233 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCcccHHHHHHHHHHHHHHhccHHHHhHHHHhhcChhhH
Confidence 666555443322221111 011110 111111 1 112335778899999999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhhhccCCc----h----hhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHH
Q psy17648 341 FDWMLDWSHIAAAIFKSMFGYLCFLTFQNDT----Q----QVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLE 412 (530)
Q Consensus 341 ~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~----~----~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~ 412 (530)
.||++..+...+.++|++.........+.+. . ..+.+.+..++...++.++..++++.+.+..++...|.++
T Consensus 234 iPrAi~~~~~~~~~~y~l~~~~~~~~~p~~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~~~~~~~~~~~~~~sR~~~ 313 (452)
T TIGR01773 234 ITRATNSVIWRIIVFYLGSIFIVVALLPWNSPNLLEVGSYVAVLELLGIPHAKLIMDFVVLTAVLSCLNSALYTTSRMLY 313 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHeeEeCCCCcccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999988888889999886554433222111 0 1223333344556777788888889999999999999996
Q ss_pred HhhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 413 TNYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIP--HFAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 413 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
..- |++..|+. .| ++++|...+++..++.++..++...-+ .++.+++..+.. ..+.|++.++.+++.|+
T Consensus 314 a~a---rdg~lP~~~~~v~-~~~~P~~Ail~~~~~~~~~~l~~~~~~~~~f~~l~~~~~~~--~~~~y~~~~~~~i~~r~ 387 (452)
T TIGR01773 314 SLA---ERGDAPRVFMKLN-KKGVPVQAVLASTFFSFLTVVVNYFAPDKVFLFLVNSSGAI--ALLVYLVIAVSQLRMRK 387 (452)
T ss_pred HHH---hCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 653 44555643 34 456787777666655555544432222 245566664433 35777777777776654
No 26
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.83 E-value=8.8e-18 Score=176.66 Aligned_cols=358 Identities=16% Similarity=0.130 Sum_probs=206.2
Q ss_pred CccCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 116 GERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 116 ~~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
+.+++|+.+.++++...++++||+|++.+|...+..|...+..+++.++.....+..+.|.... -|++|+ .|.
T Consensus 3 ~~~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~~~~~~~i~~~~~l~~al~~aEL~s~-~P~aGG------~y~ 75 (445)
T PRK10644 3 SDADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSSL-DPSPGG------SYA 75 (445)
T ss_pred CCccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCCCC------hhH
Confidence 3447789999999999999999999999998877766433344444444444333333333322 245554 444
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhc--ccchhhhHHHH
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFL--KSLHHVSMLSF 273 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~--~~l~~l~~~s~ 273 (530)
. +++.+||. ..+++.+..++.......+.......++..+++.... .....++..++++.++.+ ..+|...+++.
T Consensus 76 ~-~~~~~g~~-~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ln~~gvk~~~~i~~ 152 (445)
T PRK10644 76 Y-ARRCFGPF-LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKD-PLVLTITCVVVLWIFVLLNIVGPKMITRVQA 152 (445)
T ss_pred H-HHHHcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-cHHHHHHHHHHHHHHHHHHHhchHHHHHHHH
Confidence 4 77799995 5566666666554333343333344444444442111 111222222333334433 36788888888
Q ss_pred HHHHHHHHHHHhheeeeeeecCccCCcc-cc--ccccccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHHHH
Q psy17648 274 WCTMSHIVINVVILGYCLLQIGDWGWGK-VK--WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDWSH 349 (530)
Q Consensus 274 ~~~~~~~~~~~iii~~~~~~~~~~~~~~-~~--~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~s~ 349 (530)
+.++.+++.+++++..++.........+ .. ...++..+..++....|+|.|.+....+.+|+|||+| .||++..+.
T Consensus 153 i~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iPrai~~s~ 232 (445)
T PRK10644 153 VATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGV 232 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCchhccCCccccccchHHHHHHHHHHHHHHHHhHHHHHHHHHHhhCcccchhHHHHHHH
Confidence 7776665544433322221111000000 00 0112334556788899999999999999999999998 699999999
Q ss_pred HHHHHHHHHHHhHhhhhccCCch----h---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCC
Q psy17648 350 IAAAIFKSMFGYLCFLTFQNDTQ----Q---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQ 422 (530)
Q Consensus 350 ~~~~~~Y~~~g~~gy~~fG~~~~----~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~ 422 (530)
.+++++|+++.++.....+++.. . .+....-.++...++.+...++.+.+........+|..... .|++.
T Consensus 233 ~i~~v~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~g~~~~~~v~~~~~~s~~~~~~~~~~~~sr~~~a~---ardg~ 309 (445)
T PRK10644 233 LIAAVCYVLSSTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAA---ADDGL 309 (445)
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHhcCCChHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCC
Confidence 99999999887764433222110 1 11111112233344555555666666666677778887543 34555
Q ss_pred CCccccC--CcchhhHHHHHHHHHHHHHHHHHhhcc----cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCC
Q psy17648 423 FPSIWHL--DGELKVWGLMFRVAVVLFTIMMAVFIP----HFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGS 489 (530)
Q Consensus 423 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~ip----~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~ 489 (530)
+|+.+.+ ++++|...+++..++..+..+... .| .++.+.++ +.....+.|++|++..++++|++
T Consensus 310 lP~~~~~v~~~~tP~~Ai~~~~~i~~l~~l~~~-~~~~~~~~~~l~~~--~~~~~li~y~~~~~~~~~l~~~~ 379 (445)
T PRK10644 310 FPPIFARVNKAGTPVAGLLIVGVLMTIFQLSSI-SPNASKEFGLVSSV--SVIFTLVPYLYTCAALLLLGHGH 379 (445)
T ss_pred ccHHHHhhCcCCCCHHHHHHHHHHHHHHHHHHH-ccchHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhcC
Confidence 6654221 346677666655555444333222 34 35556665 33446788889988888776543
No 27
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.83 E-value=4.8e-18 Score=179.68 Aligned_cols=354 Identities=12% Similarity=0.127 Sum_probs=220.4
Q ss_pred CCccHHHHHHHHHhhhhccccchhHHH-HHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 121 HKINEWQAAWNVTNAIQGMFIVSLPFA-VLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 121 ~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
|+.+.++.+...++++||+|++.+|.. .+.+|..+ ++.+++.++.....+....|..... |+.|+ ...+.+
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~-P~~gG------G~y~y~ 73 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKK-PELDG------GVYSYA 73 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCC------ChhhhH
Confidence 578999999999999999999999976 55566542 4455666665555444434433322 33221 344457
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHH-HHHHHHHH--HhhhhcccchhhhHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSW-MMLIGIFL--IPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~-~~i~~~~~--~pl~~~~~l~~l~~~s~~~ 275 (530)
++.|||. ..++..+..++........+.......+..++|........+ .++..+++ +-....+.++..++++.+.
T Consensus 74 ~~~fG~~-~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~~~i~~i~ 152 (468)
T TIGR03810 74 KAGFGPF-MGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFGGGNNPPSIIGASVLLWCVHFLVLRGVEGAAFINTIT 152 (468)
T ss_pred HhHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 7899994 567777777776555555666555555555555322111121 22222222 2222235788888888888
Q ss_pred HHHHHHHHHhheeeeee--ecCccC---Ccccc----ccccccchhHHHHHhhhhcccceecccccccccCccchhhHHH
Q psy17648 276 TMSHIVINVVILGYCLL--QIGDWG---WGKVK----WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLD 346 (530)
Q Consensus 276 ~~~~~~~~~iii~~~~~--~~~~~~---~~~~~----~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~~~i~ 346 (530)
++.++..+++++..++. ..+... +++.. +...+.++..++....|+|.|++....+.+|.||+++.||++.
T Consensus 153 ~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~e~k~~k~ip~ai~ 232 (468)
T TIGR03810 153 TIAKLVPLFVFIVIGIFAFKGDTFTNDFWGNANGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLSARAEKRSDVGKATV 232 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhcHhhcCccccccccccCccccHHHHHHHHHHHHHHHHHhHhHHhhhHhhccCcccchHHHH
Confidence 77766544333322211 111100 11100 1111223557788899999999999999999999767899999
Q ss_pred HHHHHHHHHHHHHHhHhhhhccCCc--------hhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccC
Q psy17648 347 WSHIAAAIFKSMFGYLCFLTFQNDT--------QQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKG 418 (530)
Q Consensus 347 ~s~~~~~~~Y~~~g~~gy~~fG~~~--------~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 418 (530)
.+..+++++|+++.+..+...+++. ...+..+...++...++.++..++.+.+....++...|.++.. .
T Consensus 233 ~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~~~~~is~~~~~~~~~~~~sR~~~a~---a 309 (468)
T TIGR03810 233 IGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHMVGTWGAVLINIGLIISILGAWLSWTLLPAEIPLLM---A 309 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 9999999999998877654333211 1122233333456778888899999999999999999999654 3
Q ss_pred CCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 419 GDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVF-IPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 419 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~-ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
|++.+|+. .| ++++|...+.+...+..+..++... -+.++.++++.+ ....+.|+++++.++|++++
T Consensus 310 rdg~lP~~f~k~~-~~~tP~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 310 KDKLMPKYFGKEN-ANGAPTNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT--SAILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred hCCCccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHh
Confidence 45566654 23 3466777666665554433333222 235777778743 34578888999988887643
No 28
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.83 E-value=1.7e-17 Score=185.91 Aligned_cols=354 Identities=14% Similarity=0.110 Sum_probs=226.6
Q ss_pred cCCCCccHHHHHHHH-Hhhhhccccch-hHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCH
Q psy17648 118 RSRHKINEWQAAWNV-TNAIQGMFIVS-LPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSY 194 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l-~~~~iG~GiL~-lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y 194 (530)
...++.+++.+++.- +.+|+|+|++. +++...++|.. +++++++.++++..++.-+.+-...-.++.|+ .|
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG------~Y 146 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGG------AY 146 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccH------HH
Confidence 356789999999998 99999999965 55788899976 46777777777777775554443322345554 67
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc-------c-chhHHHHHHHHHHHhhhhcccch
Q psy17648 195 VSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGA-------I-DTRSWMMLIGIFLIPLGFLKSLH 266 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~-------~-~~~~~~~i~~~~~~pl~~~~~l~ 266 (530)
..+.+ +||+.+ ...+.+..++.....+..|.+..++++..+++... . +.+.+.+++ ++++.+.....++
T Consensus 147 ~yisr-alGp~~-Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~~~~~~~~~iia~i~-l~ll~~In~~Gvk 223 (953)
T TIGR00930 147 YLISR-SLGPEF-GGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIMVDPINDIRIYGTVT-VVVLLGISFAGME 223 (953)
T ss_pred HHHHH-HhCcHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCccccchHHHHHH-HHHHHHHHHhhHH
Confidence 76655 999964 56677777777777788888888888777764311 1 112222222 2222223344789
Q ss_pred hhhHHHHHHHHHHHHHHHhheeeeeeecCc---cCCcc-----cc--cc---ccc-cchhHHHHHhhhhcccceeccccc
Q psy17648 267 HVSMLSFWCTMSHIVINVVILGYCLLQIGD---WGWGK-----VK--WT---LDM-ENFPISLGVIVFSYTSQIFLPTLE 332 (530)
Q Consensus 267 ~l~~~s~~~~~~~~~~~~iii~~~~~~~~~---~~~~~-----~~--~~---~~~-~~~~~a~~~~~faf~~~~~i~~i~ 332 (530)
..++++.+.++.+++.++.+++.++....+ .++.. .. +. .+. .++...++++++||.|+.....+.
T Consensus 224 ~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~agan~s 303 (953)
T TIGR00930 224 WENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEIFSENFIPGIPGPEGGFFSLFGIFFPSVTGILAGANIS 303 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchhhhhccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988887776665554444321110 01000 00 00 111 236778888888999999999999
Q ss_pred ccccCccc-hhhHHHHHHHHHHHHHHHHHhHhhhhccCCc----hhhhhc----------------------cCC----C
Q psy17648 333 GNLIDRSK-FDWMLDWSHIAAAIFKSMFGYLCFLTFQNDT----QQVITN----------------------NFD----S 381 (530)
Q Consensus 333 ~em~~p~~-~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~----~~~il~----------------------~~~----~ 381 (530)
+|+|||+| .|+++..++.+++++|+++.++.......+. .+.... ++. .
T Consensus 304 gElKnP~r~IPratl~ai~i~~vlYllv~~~~~~~~~~d~~~~~~~~l~~~~~g~~~f~~~~~~p~~~gL~~~~~~~~~~ 383 (953)
T TIGR00930 304 GDLKDPQKAIPKGTLLAILTTTVVYLGSVVLFGACVVRDATGDKNDTLVTNCTSAACFSECAHNTCSYGLMNNLQVMSLV 383 (953)
T ss_pred HhccChhhhhHHHHHHHHHHHHHHHHHHHHHHHccccHhhhcccchhhhcccccchhhhhhcccchhhhhcchHHHHhhh
Confidence 99999998 6999999999999999998764333222111 111110 110 1
Q ss_pred chHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCc-----cccCCcchhhHHHHHHHHHHHHHHHHHhhcc
Q psy17648 382 AWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPS-----IWHLDGELKVWGLMFRVAVVLFTIMMAVFIP 456 (530)
Q Consensus 382 ~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip 456 (530)
.++..++.+...++.+++....++.+.|++...- +++.+|. +.+.+...|+..+++..++.++..+++
T Consensus 384 ~~~~~lI~ig~~~stlss~la~l~~asRvl~AmA---rDg~lP~l~~fakv~~k~~tP~~Alllt~iIa~l~ili~---- 456 (953)
T TIGR00930 384 SPFPPLITAGIFSATLSSALASLVSAPRLFQALC---KDNIYPFLQFFGKGYGKNGEPLRAYLLTAFIAEGFILIA---- 456 (953)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCCcchhhcccCCCCCCcHHHHHHHHHHHHHHHHHH----
Confidence 1244677777888888999999999999996643 3445552 223345678877777766666555554
Q ss_pred cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 457 HFAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 457 ~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
+++.+..++..++.....++--+.++++..+
T Consensus 457 ~l~~ia~lis~~fLl~Y~lvnla~~~l~~~~ 487 (953)
T TIGR00930 457 ELNTIAPIISNFFLASYALINFSCFHASLLR 487 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 7888888866555444444444444444433
No 29
>PRK10836 lysine transporter; Provisional
Probab=99.83 E-value=1.9e-17 Score=176.02 Aligned_cols=353 Identities=13% Similarity=0.149 Sum_probs=213.3
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccchhHH-HHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCH
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIVSLPF-AVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSY 194 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y 194 (530)
++++|+.+.++.++..++++||+|++.+|. +.+++|.. .++.+++.++++...+..+.|..... |++| ..
T Consensus 11 ~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~-P~sG-------g~ 82 (489)
T PRK10836 11 PGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYM-PVSG-------SF 82 (489)
T ss_pred ccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCCC-------CH
Confidence 347899999999999999999999999995 68888975 46677777777766665555544433 4555 45
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHH
Q psy17648 195 VSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFW 274 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 274 (530)
...+++.+|+.+ .+++.+..++................+..++++. +...+..++.+++. +.-....+..+.++.+
T Consensus 83 y~y~~~~~g~~~-gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~~~--~~~~~~~~~~~~~~-~lN~~gv~~~~~~~~~ 158 (489)
T PRK10836 83 ATYGQNYVEEGF-GFALGWNYWYNWAVTIAVDLVAAQLVMSWWFPDT--PGWIWSALFLGVIF-LLNYISVRGFGEAEYW 158 (489)
T ss_pred HHHHHHHcChHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC--chHHHHHHHHHHHH-HHHHHcchhhhhhHHH
Confidence 556666899965 4666776666554444444444555555555532 12122222211111 1222355655665555
Q ss_pred HHHHHHHHHHhhee------eeeeec-CccCCcccc-----ccccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 275 CTMSHIVINVVILG------YCLLQI-GDWGWGKVK-----WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 275 ~~~~~~~~~~iii~------~~~~~~-~~~~~~~~~-----~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
.++.++..++.++. .+.... +..++++.. +...+..+..+.....|+|.|++.+..+.+|+|||+| .
T Consensus 159 ~~~~ki~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~i 238 (489)
T PRK10836 159 FSLIKVTTVIVFIIVGVLMIIGIFKGAEPAGWSNWTIGDAPFAGGFAAMIGVAMIVGFSFQGTELIGIAAGESEDPAKNI 238 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccCCCCCCCCcccHHHHHHHHHHHHHHHccHHHHHHHHHHhcCHHHHH
Confidence 44444433222111 111111 011111111 0111222334455567999999999999999999998 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccCCchh---------------hhhccCCCchHHHHHHHHHHHHHHHhccchhhh
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQ---------------VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYA 406 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~---------------~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~ 406 (530)
||++..++..+.++|++.........+.+..+ .+..+....+...++++++.++++.+.+..++.
T Consensus 239 PrAi~~~~~~v~~~Yvl~~~~~~~~vp~~~~~~~~~~~~~~~~sp~~~~~~~~g~~~~~~ii~~~il~a~~~~~n~~~~~ 318 (489)
T PRK10836 239 PRAVRQVFWRILLFYVFAILIISLIIPYTDPSLLRNDVKDISVSPFTLVFQHAGLLSAAAVMNAVILTAVLSAGNSGMYA 318 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecCCCChhhhccccccccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998866544332211000 112222222345677888888999999999999
Q ss_pred HHHHHHHhhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHhHhhhhHHHhhhhhh
Q psy17648 407 ACELLETNYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIP--HFAILMGFIGSFTGTMLSFIWPCYF 481 (530)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~li~l~Ga~~~~~~~~i~P~l~ 481 (530)
..|+++.. .|++..|+. .| ++++|...+++..++.++..+....-+ .++.++++.+ ....+.|++.++.
T Consensus 319 ~sR~l~a~---Ardg~lP~~~~kv~-~~~~P~~All~~~~~~~l~~l~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~a 392 (489)
T PRK10836 319 STRMLYTL---ACDGKAPRIFAKLS-RGGVPRNALYATTVIAGLCFLTSMFGNQTVYLWLLNTSG--MTGFIAWLGIAIS 392 (489)
T ss_pred HHHHHHHH---HcCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 99999664 345566654 33 446787777766666555554433322 2455666644 3456777778888
Q ss_pred HHhhcC
Q psy17648 482 HLKLKG 487 (530)
Q Consensus 482 ~l~~~~ 487 (530)
++++||
T Consensus 393 ~l~~R~ 398 (489)
T PRK10836 393 HYRFRR 398 (489)
T ss_pred HHHHHH
Confidence 877665
No 30
>PRK11021 putative transporter; Provisional
Probab=99.83 E-value=2.3e-17 Score=171.68 Aligned_cols=351 Identities=12% Similarity=0.112 Sum_probs=209.8
Q ss_pred ccHHHHHHHHHhhhhccccchhHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHh
Q psy17648 123 INEWQAAWNVTNAIQGMFIVSLPFA-VLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASEC 201 (530)
Q Consensus 123 ~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~ 201 (530)
.+.++++...++++||+|++.+|.. .+.+|...++.+++.++.....+..+.|..... |++| ......++.
T Consensus 1 ~g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~~~~~~~~i~~~~~~~~al~~aEl~s~~-P~aG-------G~y~y~~~~ 72 (410)
T PRK11021 1 LGLWQGIGLLSTSLLGTGVFAVPALAALVAGNNSLWAWPLLILLIFPIAIVFARLGRHF-PHAG-------GPAHFVGMA 72 (410)
T ss_pred CcHHHHHHHHHHHHHhhHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-------CHHHhHHHH
Confidence 3689999999999999999999955 777785456666666666666665555544433 3445 445566779
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHH
Q psy17648 202 FGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIV 281 (530)
Q Consensus 202 ~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~ 281 (530)
+||+++ ++..+..++.......+.......++..+++...... ....+...+++-+.-.+.++..++++.+.++..+.
T Consensus 73 ~G~~~g-f~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ln~~Gv~~~~~~~~~~~~~~~~ 150 (410)
T PRK11021 73 FGPRLG-RVTGWLFLSVIPVGLPAALQIAAGFGQALFGWSSWQL-LLAELLTLALLWLLNLRGASSSANLQTVIALLIVA 150 (410)
T ss_pred hCchhH-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCCCCchH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 999754 5555555544322333333344455555555322211 11111112222223335677777777765544333
Q ss_pred HHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHHHHHHHHHHHHHHH
Q psy17648 282 INVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDWSHIAAAIFKSMFG 360 (530)
Q Consensus 282 ~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~s~~~~~~~Y~~~g 360 (530)
.+++....+-....+..+.+. ...++.++..++....|+|.|++......+|+|||+| .||++..+..++.++|+++.
T Consensus 151 i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~k~iPrAi~~~~~~~~~lYil~~ 229 (410)
T PRK11021 151 LVVAIWWAGDIKPADIPFPAP-GSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNPERDFPRALMIGLLLAGLVYWACT 229 (410)
T ss_pred HHHHHHHHcCCchhcCCCCCC-CCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCccccccHHHHHHHHHHHHHHHHHH
Confidence 322221111100001011100 1124456778899999999999999999999999988 69999999999999999887
Q ss_pred hHhh--hhccCCch-----hhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCccccC--Cc
Q psy17648 361 YLCF--LTFQNDTQ-----QVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIWHL--DG 431 (530)
Q Consensus 361 ~~gy--~~fG~~~~-----~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 431 (530)
+... ..+++... ..+....-.++...++.++..++.+.+.+...+...|.++.. .|++..|+.+.+ ++
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ii~i~~~~s~~~~~~~~~~~~sR~l~a~---ardg~lP~~~~k~~~~ 306 (410)
T PRK11021 230 VVVLHFPAYGDKQAAAASLPGIFVQLFGGYALWVICVIGYLACFASVNIYTQSFARLVWSQ---AREGRPPSYLARLSAR 306 (410)
T ss_pred HHHHhcCCCcchhhccccHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HccCCccHHHHhhccC
Confidence 6532 22233211 111222112233455666677788888888888888998654 345556654221 34
Q ss_pred chhhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCC
Q psy17648 432 ELKVWGLMFRVAVVLFTIMMAVF-IPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGS 489 (530)
Q Consensus 432 ~~~~~~~~~~~~~~~~~~~ia~~-ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~ 489 (530)
++|...+++...+.++..++... ..+++.++++.. ....+.|.++.+-.+|++|++
T Consensus 307 ~tP~~ail~~~~i~~~~~l~~~~~~~~~~~l~~~~~--~~~li~y~~~~~a~~~l~~~~ 363 (410)
T PRK11021 307 GVPVNALNAVLGCCAVSILLIYALGLNLEALIAYAN--GIFVLIYLLCMLAACKLLKGR 363 (410)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHHHHHHhccc
Confidence 66776666655554444433322 357888888744 445788888888888776543
No 31
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.83 E-value=8.4e-18 Score=177.95 Aligned_cols=353 Identities=14% Similarity=0.169 Sum_probs=213.4
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhHH-HHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLPF-AVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
+++|+++.++.++..++++||+|++..|. +++.+|.. .++.+++.+++....+..+.|-.... |++| .+.
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~-P~aG-------G~y 82 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAM-PETG-------AFH 82 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-------CHH
Confidence 47899999999999999999999998885 57788865 35666666666666665555544333 4445 455
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
...++.+|+. ..+.+.+..++.....+.......+..++.++++ .+...+.++..++ +-+...+.+|..++++.+.
T Consensus 83 ~y~~~~~g~~-~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~~~~~~-~~~in~~gvk~~~~~~~~~ 158 (471)
T PRK11387 83 VYAARYLGPA-TGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFPQ--VPVWPWCLLFCAL-IFGLNVVSTRFFAEGEFWF 158 (471)
T ss_pred HHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--CcHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHH
Confidence 6677799995 4567777777765555544455555555555553 1222222222222 2222234566666666555
Q ss_pred HHHHHHHHHhheeeeee----ecC--c----cCCcccc---c-cccccchhHHHHHhhhhcccceecccccccccCccc-
Q psy17648 276 TMSHIVINVVILGYCLL----QIG--D----WGWGKVK---W-TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK- 340 (530)
Q Consensus 276 ~~~~~~~~~iii~~~~~----~~~--~----~~~~~~~---~-~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~- 340 (530)
++.+++.+++++..++. ..+ + ...++.. + +....++..++....|+|.|.+.+....+|+|||+|
T Consensus 159 ~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~r~ 238 (471)
T PRK11387 159 SLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFPHGGLPILMTMVAVNFAFSGTELIGIAAGETENPAKV 238 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCcccHHHHHHHHHHHHHHHcCHHHHHHHHHHhcChhhH
Confidence 54444443322221110 000 0 0111111 1 011223567778899999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhhhccCC-c---h---hhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q psy17648 341 FDWMLDWSHIAAAIFKSMFGYLCFLTFQND-T---Q---QVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLET 413 (530)
Q Consensus 341 ~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~-~---~---~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~ 413 (530)
.||++..+..++.++|++..+......+.+ . . ..+..+...++...++.++..++++.+....++...|.++.
T Consensus 239 iPrAi~~~~~~~~~~y~~~~~~~~~~~p~~~~~~~~~p~~~~~~~~g~~~~~~ii~~~~~~s~~~~~~~~~~~~sR~l~a 318 (471)
T PRK11387 239 IPVAIRTTIARLVIFFVGTVLVLAALIPMQQAGVEKSPFVLVFEKVGIPYAADIFNFVILTAILSAANSGLYASGRMLWS 318 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheecCccccCccCChHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 599999999999999988776543333211 1 1 12234444456677788888899999999999999999966
Q ss_pred hhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhccc--HHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 414 NYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPH--FAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 414 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
. .|++..|+. .+ ++++|...+++..+..++..+.....++ +..+.++.+ ....+.|+++++.++++||+
T Consensus 319 ~---ardg~lP~~f~~~~-~~~~P~~Ail~~~~~~~l~~~~~~~~~~~~~~~l~~l~~--~~~li~y~~~~~~~i~lr~~ 392 (471)
T PRK11387 319 L---SNEGTLPACFARLT-KRGIPLTALSVSMLGGLLALFSSVVAPDTVFVALSAISG--FAVVAVWLSICASHFMFRRR 392 (471)
T ss_pred H---HhcCCcCHHHHHhC-CCCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 4 345556654 23 3456776666554433333332222221 333444422 23457788888888776653
No 32
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.82 E-value=1.5e-17 Score=175.81 Aligned_cols=355 Identities=14% Similarity=0.128 Sum_probs=218.4
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhH-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLP-FAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP-~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
+++|+.+.++..+..++++||+|++..| .+++++|...+..+++.+++....+ .|+.|+....+. ..++.+
T Consensus 17 ~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~~i~~~~i~~i~~~~~~----~s~aEl~s~~~~----~~~~~~ 88 (469)
T PRK11049 17 SLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPSIIFVYMIIGFMLFFVM----RAMGELLLSNLE----YKSFSD 88 (469)
T ss_pred hhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcHHHHHHHHHHHHHHHHH----HHHHHHHHhcCC----CCcHHH
Confidence 4889999999999999999999999877 5688888743555555565554444 344454321011 226678
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCT 276 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 276 (530)
++++.+|| ...+++.+..++.......+.....+.++..++|+. +...+.++... ++-+.-....+..++++.+.+
T Consensus 89 ya~~~~g~-~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~~--~~~~~~~~~~~-~~~~iN~~g~~~~~~i~~~~~ 164 (469)
T PRK11049 89 FASDLLGP-WAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPDL--SDWVASLAVVL-LLLSLNLATVKMFGEMEFWFA 164 (469)
T ss_pred HHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--cHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHH
Confidence 89999999 466778887777655444555556666666666642 22222222111 111222236777788887766
Q ss_pred HHHHHHHHhheeeeeee------cCcc---CCcccc----c-cccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 277 MSHIVINVVILGYCLLQ------IGDW---GWGKVK----W-TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 277 ~~~~~~~~iii~~~~~~------~~~~---~~~~~~----~-~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
+.++..++++++.++.. .++. .+.+.. + +.++.++..++....|+|.|++.+....+|+|||+| .
T Consensus 165 ~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~i 244 (469)
T PRK11049 165 MIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVFAFVGIELVGTTAAETKDPEKSL 244 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhcHHHHHHHHHHhcCHhhHH
Confidence 66555544433322211 1111 011110 1 112335778999999999999999999999999998 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccCC-c---hh---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQND-T---QQ---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETN 414 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~-~---~~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~ 414 (530)
||++..+...+.++|++.....+..-+.+ . .+ .+......++...++.++..++.+.+.....+...|.+...
T Consensus 245 Prai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~~~~sR~l~a~ 324 (469)
T PRK11049 245 PRAINSIPIRIIMFYVFALIVIMSVTPWSSVVPDKSPFVELFVLVGLPAAASVINFVVLTSAASSANSGVFSTSRMLFGL 324 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHeeecCccccCccCCcHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998777888888987766654322111 1 01 12222333456677888888888888888889999999665
Q ss_pred hccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHh--HhhhhHHHhhhhhhHHhhcCC
Q psy17648 415 YFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGS--FTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 415 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga--~~~~~~~~i~P~l~~l~~~~~ 488 (530)
- |++..|+. .+ ++++|+..+++..++.++..++....|+....++.+.. .....+.|+++++.++++|++
T Consensus 325 a---rdg~lP~~~~kv~-~~~tP~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~y~~~~~a~~~lr~~ 399 (469)
T PRK11049 325 A---QEGVAPKAFAKLS-KRAVPAKGLTFSCICLLGGVVLLYVNPSVIGAFTLVTTVSAILFMFVWTIILCSYLVYRKQ 399 (469)
T ss_pred H---hCCCCCHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 34555643 23 34677777766655444434444455554333333222 223457777888887776543
No 33
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.82 E-value=1.2e-17 Score=175.74 Aligned_cols=354 Identities=12% Similarity=0.185 Sum_probs=226.5
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLPF-AVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
+++|+.+.++..+..++++||+|++..|. +.+++|...++.+++.+++....+..+.|..... |.+| ++.+
T Consensus 9 ~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~i~gi~~~~v~~s~aEl~s~~-P~aG-------g~y~ 80 (456)
T PRK10238 9 QLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGPGIILGYAIAGFIAFLIMRQLGEMVVEE-PVAG-------SFSH 80 (456)
T ss_pred hhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCC-------CHHH
Confidence 48899999999999999999999998885 4777886335555666665555554444433322 4444 6666
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCT 276 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~ 276 (530)
.+++.+|| +..+++.+..++.....+.......++.++.++|+ .+...+.++...+...+ -....+..++++.+.+
T Consensus 81 ~~~~~~g~-~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~~~i~~~~~~~l-N~~gv~~~~~~~~~~~ 156 (456)
T PRK10238 81 FAYKYWGS-FAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE--IPTWVSAAVFFVVINAI-NLTNVKVFGEMEFWFA 156 (456)
T ss_pred HHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--CcHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHH
Confidence 77779999 57788999998888778888888888888877764 22222222222211111 2235667777776665
Q ss_pred HHHHHHHHhheeee----ee--ecCccCCccc----cc-cccccchhHHHHHhhhhcccceecccccccccCccc-hhhH
Q psy17648 277 MSHIVINVVILGYC----LL--QIGDWGWGKV----KW-TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWM 344 (530)
Q Consensus 277 ~~~~~~~~iii~~~----~~--~~~~~~~~~~----~~-~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~ 344 (530)
+.++..++++++.+ .. ..+.....+. .+ +..+.++..++....|+|.|.+......+|+|||+| .||+
T Consensus 157 ~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~af~G~e~~~~~aeE~knP~r~iPrA 236 (456)
T PRK10238 157 IIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLPHGFTGLVMMMAIIMFSFGGLELVGITAAEADNPEQSIPKA 236 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCccccHHHHHHHHHHHHHHhcCHHHHHHHHHhhcChhhHHHHH
Confidence 55554433222111 10 1111111111 01 112234556778899999999999999999999998 5999
Q ss_pred HHHHHHHHHHHHHHHHhHhh--hhccCC---ch--hhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Q psy17648 345 LDWSHIAAAIFKSMFGYLCF--LTFQND---TQ--QVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFK 417 (530)
Q Consensus 345 i~~s~~~~~~~Y~~~g~~gy--~~fG~~---~~--~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 417 (530)
+..+...+.++|+....... ..+.+- .. ..++.+....+...++++++.++.+.+.+..++...|.++..
T Consensus 237 i~~~~~~i~~~y~~~~~~~~~~~p~~~l~~~~sP~~~~~~~~g~~~~~~i~~~~i~~~~~s~~~~~~~~~sR~l~a~--- 313 (456)
T PRK10238 237 TNQVIYRILIFYIGSLAVLLSLMPWTRVTADTSPFVLIFHELGDTFVANALNIVVLTAALSVYNSCVYCNSRMLFGL--- 313 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHheecChhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 99888888888865433221 111111 01 122334444456677788888888889999999999999664
Q ss_pred CCCCCCCccccC--CcchhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 418 GGDSQFPSIWHL--DGELKVWGLMFRVAVVLFTIMMAVFIP--HFAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 418 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
.|++..|+.+.+ ++++|...+++..++.++..++....| .++.++++ +.....+.|++|++.+++.||+
T Consensus 314 ardg~lP~~f~kv~~~~~P~~Ail~~~~i~~l~~l~~~~~~~~~f~~l~~~--~~~~~~i~y~~~~~~~l~~r~~ 386 (456)
T PRK10238 314 AQQGNAPKALASVDKRGVPVNTILVSALVTALCVLINYLAPESAFGLLMAL--VVSALVINWAMISLAHMKFRRA 386 (456)
T ss_pred HhCCCccHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 345566644221 346788777777766655555433334 47777787 4455679999999999987753
No 34
>TIGR00909 2A0306 amino acid transporter.
Probab=99.82 E-value=1.6e-17 Score=174.20 Aligned_cols=348 Identities=9% Similarity=0.061 Sum_probs=221.1
Q ss_pred CCCccHHHHHHHHHhhhhccccchhHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFIVSLPFA-VLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
+|+.+.++.++..+++++|+|++.+|.. ...+|...++.+++.++.....+....|..... |+.| ...+..
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~~~l~~li~~~~~~~~a~~~~el~~~~-p~~G-------g~y~~~ 73 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPAVILSFVLAGLTALFIALVYAELAAML-PVAG-------SPYTYA 73 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCC-------cceeeH
Confidence 6789999999999999999999999965 555665445566666666666666666655443 3334 333455
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC--ccchhH-----------HHHHHHHHHHhhhhcccc
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG--AIDTRS-----------WMMLIGIFLIPLGFLKSL 265 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~--~~~~~~-----------~~~i~~~~~~pl~~~~~l 265 (530)
++.+||+ ..++..+..++.....+..+....++.+..+++.. ..+... +..+..++++-+...+..
T Consensus 74 ~~~~G~~-~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 74 YEAMGEL-TAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGLDLPAVLTAKPGNGGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCchhhhcCCcccccccHHHHHHHHHHHHHHHhCc
Confidence 6689995 56777777777776677777777777776665421 111111 111222222223334578
Q ss_pred hhhhHHHHHHHHHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcccceecccccccccCccc-hhhH
Q psy17648 266 HHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWM 344 (530)
Q Consensus 266 ~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~ 344 (530)
+..++++.+....++..+++++..++......++++. .+.+..++..++...+|+|.|++......+|+|||+| .||+
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~r~ip~a 231 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFASNNYTPF-MPMGFGGVGAATALVFFAFIGFEAISTAAEEVKNPERDIPKA 231 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcHHhcCCC-CCCcHHHHHHHHHHHHHHHhhHHHHHhhHHhccCccccccHH
Confidence 8888888888777776655443333322111112111 1223445678899999999999999999999999987 5999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccCC-------chhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhcc
Q psy17648 345 LDWSHIAAAIFKSMFGYLCFLTFQND-------TQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFK 417 (530)
Q Consensus 345 i~~s~~~~~~~Y~~~g~~gy~~fG~~-------~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~ 417 (530)
+..+..++.++|++..+......+.+ ....+..+...++...++.++..++++.+....++...|.+...-
T Consensus 232 i~~~~~~~~v~Yil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a-- 309 (429)
T TIGR00909 232 IILSLIVVTLLYVLVAAVILGAVPWRQLAGSTAPLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMS-- 309 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcCHHHhCCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 99999999999998876654322111 011222333445667788899999999999999999999996643
Q ss_pred CCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhc
Q psy17648 418 GGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLK 486 (530)
Q Consensus 418 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~ 486 (530)
|++..|+. .|.+.++|...+++..++.++.. ...+++.++++.+.. ..+.|++.++..+++|
T Consensus 310 -~dg~lP~~~~~~~~~~~~P~~a~~~~~~i~~~~~----~~~~~~~l~~~~~~~--~~~~y~~~~~a~~~lr 374 (429)
T TIGR00909 310 -RDGLLPGSLSKVHPKTGTPHMSIIIFSLTAALLA----SLVPLEGLAELTSIG--TLIAFAAVNVAVIILR 374 (429)
T ss_pred -cCCCCcHHHHHcCCCCCCcHHHHHHHHHHHHHHH----HHcCHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 34556653 23344667665554443333221 224677777775433 3555665555554443
No 35
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.82 E-value=7.6e-18 Score=178.37 Aligned_cols=354 Identities=12% Similarity=0.122 Sum_probs=215.0
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHh-ccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcC-CCCccccCCCHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLR-GGYW-AIFAMIGIAYICCYTGKILVECLYEIDPN-TGQRVRVRNSYV 195 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~-~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~-~g~~~~~~~~y~ 195 (530)
.+|+.+.+++++..++++||+|++.+|....+ +|.. .++.+++.++.....+....|..... |+ +|+ .|.
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~-P~~sGG------~y~ 77 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKK-PELDGG------IYA 77 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCCC------hhh
Confidence 46789999999999999999999999988654 4443 24556666665555554444444333 33 553 344
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCcc-chhHHHHHHHHHHH--hhhhcccchhhhHHH
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAI-DTRSWMMLIGIFLI--PLGFLKSLHHVSMLS 272 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~-~~~~~~~i~~~~~~--pl~~~~~l~~l~~~s 272 (530)
..++.+||. ..++..+..++........+.....+.+..++|.... ......++..++++ -..-.+.++..++++
T Consensus 78 -y~~~~~G~~-~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~ln~~Gi~~~~~i~ 155 (473)
T TIGR00905 78 -YAREGFGPY-IGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFGSGNPVPSILGASVLLWVFTFLVLRGVRQAAFIN 155 (473)
T ss_pred -hHHhHcccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcHHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 557799995 5667777776655555555555555666666652111 11111222222222 233345888888888
Q ss_pred HHHHHHHHHHHHhheeeeeeec--Ccc--CCccccc---cccccchhHHHHHhhhhcccceecccccccccCccc-hhhH
Q psy17648 273 FWCTMSHIVINVVILGYCLLQI--GDW--GWGKVKW---TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWM 344 (530)
Q Consensus 273 ~~~~~~~~~~~~iii~~~~~~~--~~~--~~~~~~~---~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~ 344 (530)
.+.++.++..+++++..++... ... .+.+... ...+..+..++....|+|.|++....+.+|+|| +| .||+
T Consensus 156 ~~~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~r~iPra 234 (473)
T TIGR00905 156 TITTIAKLIPLFLFIIIGWFWFKLDLFTADFWGHDVPSLGSVFSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-KSDVGKA 234 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCchhcccccCccCCCcccchHHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-cccchHH
Confidence 8887766655443332222111 110 0001000 012234567788899999999999999999999 65 6999
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccCCc----hhh----hhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 345 LDWSHIAAAIFKSMFGYLCFLTFQNDT----QQV----ITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 345 i~~s~~~~~~~Y~~~g~~gy~~fG~~~----~~~----il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
+..+..++.++|++...+.....+.+. .++ +......++...++.++..++.+.+....+....|.++..
T Consensus 235 i~~~~~i~~~~Yil~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~g~~~~~~i~i~~~is~~~~~~~~~~~~sR~~~am-- 312 (473)
T TIGR00905 235 TVLGTLGALVIYILITLLSLGVLPQQELANLPNPSMAAVLEMIVGKWGAVLISLGLIISVLGSLLSWTMLAAEVPFSA-- 312 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCHHHHhhCCCchHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999888766443322111 011 1122222344566777788888899888999999999664
Q ss_pred cCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 417 KGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVF-IPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 417 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~-ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
.|++.+|+. .|. +++|...+++..++..+..++... ..+++.+.++.+ ....+.|.++++..+++|++
T Consensus 313 -ardg~lP~~~~~v~~-~~tP~~Ai~~~~~i~~~~~~~~~~~~~~~~~l~~~~~--~~~~i~y~~~~~a~~~lr~~ 384 (473)
T TIGR00905 313 -AKDGLFPKIFGRVNK-NGAPSVALLLTNILIQLFLLLTLLTSSAYNVLVSLAV--VMILVPYLLSAAYLLKLAKV 384 (473)
T ss_pred -HhCCChhHHHHhhCc-cCCCHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHc
Confidence 345556643 242 366777666655444333222221 236777777743 44567777877777766543
No 36
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.81 E-value=4.6e-17 Score=172.93 Aligned_cols=351 Identities=13% Similarity=0.146 Sum_probs=220.5
Q ss_pred CCCccHHHHHHHHHhhhhccccchhH-HHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFIVSLP-FAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~GiL~lP-~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
+|+++.++..+..++.+||+|++..| .+++.+|..+ ++.+++.+++....+..+.|..... |++|+ .|...
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~-P~~gG------~~~~~ 73 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFY-PVVSG------SFATY 73 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCC------CHHHH
Confidence 46789999999999999999998776 6688888654 6667777777666665555544433 32232 68888
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTM 277 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 277 (530)
+++.+|+. ..+++.+..++.....+.......+..+..+.++ .+...|..+..+ ++-+.-.+..+..++++.+.+.
T Consensus 74 ~~~~~g~~-~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~in~~gv~~~~~~~~~~~~ 149 (478)
T TIGR00913 74 ASRFVDPA-FGFAVGWNYWLQWLIVLPLELVTASMTIQYWTDK--VNPAVWIAIFYV-FIVIINLFGVKGYGEAEFWFSS 149 (478)
T ss_pred HHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH-HHHHHHHhcchHHHHHHHHHHH
Confidence 89999995 5577888888777667777777777777655442 223333332222 2222233467777777776654
Q ss_pred HHHHHHHhheeeeee----ecCcc---C---Cccc-ccccc-----ccchhHHHHHhhhhcccceecccccccccCccc-
Q psy17648 278 SHIVINVVILGYCLL----QIGDW---G---WGKV-KWTLD-----MENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK- 340 (530)
Q Consensus 278 ~~~~~~~iii~~~~~----~~~~~---~---~~~~-~~~~~-----~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~- 340 (530)
.++..++.+++.++. ..+.. + +.+. .+..+ +.++..++....|+|.|.+....+.+|+|||+|
T Consensus 150 ~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~r~ 229 (478)
T TIGR00913 150 IKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGEAANPRKS 229 (478)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHhhcChhhH
Confidence 444333221111110 01110 0 0000 01111 334667888899999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhhhccCCc----h---------hh---hhccCCCchHHHHHHHHHHHHHHHhccchh
Q psy17648 341 FDWMLDWSHIAAAIFKSMFGYLCFLTFQNDT----Q---------QV---ITNNFDSAWFRGFVNFFLVVKALLSYPLPY 404 (530)
Q Consensus 341 ~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~----~---------~~---il~~~~~~~~~~i~~~~~~i~~~~s~pl~~ 404 (530)
.||++..+..++.++|++..+......+.+. . ++ ...+...++...++.++..++.+.+....+
T Consensus 230 iPrai~~~~~~~~~~Y~l~~~~~~~~~p~~~~~l~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~s~~~~~~~~~ 309 (478)
T TIGR00913 230 IPRAAKRTFWRILVFYILTLFLIGFLVPYNDPRLLSSSSSSDSAASPFVIAIQNHGIKVLPHIFNAVILISVLSAANSSL 309 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheeeccCCChhhcccccCCCcCCCcHHHHHHHcCCchHhHHHHHHHHHHHHHHHHhhH
Confidence 5999999999999999987654322222110 0 11 122333345566778888889999999999
Q ss_pred hhHHHHHHHhhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHhHhhhhHHHhhhh
Q psy17648 405 YAACELLETNYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFI--PHFAILMGFIGSFTGTMLSFIWPC 479 (530)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~i--p~~~~li~l~Ga~~~~~~~~i~P~ 479 (530)
+...|.++.. .|++..|+. .+ ++++|...+++..++.++.++....- ..++.+.++. .....+.|++++
T Consensus 310 ~~~sR~l~a~---ardg~lP~~f~k~~-~~~~P~~Ai~~~~~~~~l~~l~~~~~~~~~~~~l~~~~--~~~~~i~y~~~~ 383 (478)
T TIGR00913 310 YASSRTLYAL---AHQGLAPKIFAYVD-RRGVPYVAVIVSSLFGLLAFLAVSKKEAEVFTWLLNIS--GLSGFFTWMCIC 383 (478)
T ss_pred HHHHHHHHHH---HhCCcccHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHHccChHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999999664 344555643 23 34567776665555443332221111 1356666663 335678888888
Q ss_pred hhHHhhcC
Q psy17648 480 YFHLKLKG 487 (530)
Q Consensus 480 l~~l~~~~ 487 (530)
+.++++||
T Consensus 384 ~~~i~~r~ 391 (478)
T TIGR00913 384 LSHIRFRK 391 (478)
T ss_pred HHHHHHHH
Confidence 88887754
No 37
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.80 E-value=6.3e-17 Score=173.62 Aligned_cols=352 Identities=10% Similarity=0.069 Sum_probs=217.3
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhHHH-H-HhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLPFA-V-LRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~-~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
+++|+.+.++.++..++.++|+|++.+|.. . ..+|...++.+++.++.+...+....|..... |++|+ .|.
T Consensus 25 ~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~~~ls~liagv~~l~~al~yaElas~~-P~sGg------~Y~ 97 (557)
T TIGR00906 25 KMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPAIVLSFLISGLAAVLSGFCYAEFGARV-PKAGS------AYL 97 (557)
T ss_pred chhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCc------cee
Confidence 478999999999999999999999999854 3 45786445556666666655554444443332 45554 444
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC--------------Cccch-hHHHHHHHHHHHhhh
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD--------------GAIDT-RSWMMLIGIFLIPLG 260 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~--------------~~~~~-~~~~~i~~~~~~pl~ 260 (530)
.. ++.+|+. ..+++.+..++.....+.+.....++++..++.. ..... ..+..+..++++-+.
T Consensus 98 y~-~~~~G~~-~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~a~~ii~l~~~l 175 (557)
T TIGR00906 98 YS-YVTVGEL-WAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAEYPDFFAVCLILLLAVL 175 (557)
T ss_pred eH-HHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccccchHHHHHHHHHHHHH
Confidence 33 4478995 5677777776665444444444334433322210 00101 111111122222233
Q ss_pred hcccchhhhHHHHHHHHHHHHHHHhheeeeeeecCccCCcc-----c-cc-cccccchhHHHHHhhhhcccceecccccc
Q psy17648 261 FLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGK-----V-KW-TLDMENFPISLGVIVFSYTSQIFLPTLEG 333 (530)
Q Consensus 261 ~~~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~~~~~-----~-~~-~~~~~~~~~a~~~~~faf~~~~~i~~i~~ 333 (530)
..+.++..++++.+.++.++..++++++.++......++.. . ++ +.++.++..+.....|+|.|.+.+....+
T Consensus 176 n~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~~~~~~~~~~~~~~f~p~g~~g~l~g~~~~~faf~Gfd~v~~~ae 255 (557)
T TIGR00906 176 LSFGVKESAWVNKIFTAINILVLLFVIIAGFTKADVANWSITEEKGAGGFMPYGFTGVLSGAATCFFAFIGFDAIATTGE 255 (557)
T ss_pred HHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCchhccccccccCCCCCCcchHHHHHHHHHHHHHHhhHHHHHHhHH
Confidence 34588999999998888777766655555543221111110 0 11 12334567888899999999999999999
Q ss_pred cccCccc-hhhHHHHHHHHHHHHHHHHHhHhhhhcc-----CC-chhhhhccCCCchHHHHHHHHHHHHHHHhccchhhh
Q psy17648 334 NLIDRSK-FDWMLDWSHIAAAIFKSMFGYLCFLTFQ-----ND-TQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYA 406 (530)
Q Consensus 334 em~~p~~-~~~~i~~s~~~~~~~Y~~~g~~gy~~fG-----~~-~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~ 406 (530)
|+|||+| .||++..++.+++++|+++.+....... ++ ...........++...++.+...++++.+....++.
T Consensus 256 E~knP~r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~~~~sl~~~~~~ 335 (557)
T TIGR00906 256 EVKNPQRAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCGMSTSLLGGMFP 335 (557)
T ss_pred hccCccccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 6999999999999999888665332211 11 111233333444566777777888888888888999
Q ss_pred HHHHHHHhhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHH
Q psy17648 407 ACELLETNYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHL 483 (530)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l 483 (530)
..|.++.. .|++..|+. .|.+.++|+...++..++. .+++.. .+++.+.++. ..+..+.|.++++..+
T Consensus 336 ~sRil~am---arDGlLP~~fakv~~r~~tP~~Ail~~~iv~---~il~~~-~~~~~l~~l~--sig~ll~y~lv~~~~l 406 (557)
T TIGR00906 336 LPRVIYAM---ARDGLLFKWLAQINSKTKTPINATVVSGAIA---ALMAFL-FDLKALVDLL--SIGTLLAYSLVAACVL 406 (557)
T ss_pred HHHHHHHH---HcCCCccHHHhccCCCCCCcHHHHHHHHHHH---HHHHHH-cCHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 99999664 345556643 3435566776555444333 223322 2577777773 3445788888877666
Q ss_pred hhcC
Q psy17648 484 KLKG 487 (530)
Q Consensus 484 ~~~~ 487 (530)
++|+
T Consensus 407 ~lR~ 410 (557)
T TIGR00906 407 ILRY 410 (557)
T ss_pred Hhhc
Confidence 6653
No 38
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.79 E-value=4.7e-17 Score=171.21 Aligned_cols=350 Identities=12% Similarity=0.054 Sum_probs=207.3
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhHHH-HHhccHH--HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLPFA-VLRGGYW--AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSY 194 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~--gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y 194 (530)
+++|+.+.++.+...++.++|+|++..|.. ...+|-. .++.+++.++++...+....|..... |++|+ .|
T Consensus 5 ~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~-P~~GG------~y 77 (445)
T PRK11357 5 ELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAY-PENGA------DY 77 (445)
T ss_pred cccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhc-CCCCC------ce
Confidence 478999999999999999999999998875 4555632 34555666666555554445544433 45565 44
Q ss_pred HHHHHHhhCchhHHHHHHHH-HHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhh--hhcccchhhhHH
Q psy17648 195 VSIASECFGPVWGARAVNLA-QMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPL--GFLKSLHHVSML 271 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~-~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl--~~~~~l~~l~~~ 271 (530)
.. .++.+||.++ ++..+. .+.........+....++++..+++.. ......+..+++..+ .-.+.++..+++
T Consensus 78 ~y-~~~~~g~~~g-f~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~ln~~gv~~~~~v 152 (445)
T PRK11357 78 VY-LKNAGSRPLA-FLSGWASFWANDAPSLSIMALAIVSNLGFLTPID---PLLGKFIAAGLIIAFMLLHLRSVEGGAAF 152 (445)
T ss_pred ee-HHHhcCChhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 43 3458999655 445543 444333444455556666665544421 111222222222222 233577788888
Q ss_pred HHHHHHHHHHHHHhheeeeeeecCccCCccc-cc----cccccchhHHHHHhhhhcccceecccccccccCccc-hhhHH
Q psy17648 272 SFWCTMSHIVINVVILGYCLLQIGDWGWGKV-KW----TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWML 345 (530)
Q Consensus 272 s~~~~~~~~~~~~iii~~~~~~~~~~~~~~~-~~----~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i 345 (530)
+.+.++.+++.+++++..++......++++. .. ..++.++..++....|+|.|++....+.+|+|||+| .||++
T Consensus 153 ~~~~~~~~~~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~r~iP~Ai 232 (445)
T PRK11357 153 QTLITIAKIIPFTIVIGLGIFWFKAENFAAPTTTAIGATGSFMALLAGISATSWSYTGMASICYMTGEIKNPGKTMPRAL 232 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccCCCcccccccchHHHHHHHHHHHHHHHhhHHHHHhhHHHhcCccccchHHH
Confidence 8887776665443333222211111111110 00 011334667788899999999999999999999998 59999
Q ss_pred HHHHHHHHHHHHHHHhHhhhhccCC-----ch--hhhhccCC--CchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 346 DWSHIAAAIFKSMFGYLCFLTFQND-----TQ--QVITNNFD--SAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 346 ~~s~~~~~~~Y~~~g~~gy~~fG~~-----~~--~~il~~~~--~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
..++.+++++|++........-+.+ .. ..+...++ .++...++.++..++++.+.+.......|.++..-
T Consensus 233 ~~~~~i~~~~Y~l~~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~a~a- 311 (445)
T PRK11357 233 IGSCLLVLVLYTLLALVISGLMPFDKLANSETPISDALTWIPALGSTAGIFVAITAMIVILGSLSSCVMYQPRLEYAMA- 311 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHhcCCchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH-
Confidence 9999999999988876544321111 00 11122111 12234445556667777788888888888886643
Q ss_pred cCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhc
Q psy17648 417 KGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLK 486 (530)
Q Consensus 417 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~ 486 (530)
|++.+|+. .|.+.++|...+++..++.++.. ..++++.+.++..............+++.+|.+
T Consensus 312 --rdg~lp~~~~~v~~~~~tP~~a~l~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~~~a~i~lr~~ 378 (445)
T PRK11357 312 --KDNLFFKCFGHVHPKYNTPDVSIILQGALGIFFI----FVSDLTSLLGYFTLVMCFKNTLTFGSIIWCRKR 378 (445)
T ss_pred --hcCCchHHHHHhCCCCCCCHHHHHHHHHHHHHHH----HHcCHHHHHHHHHHHHHHHHHHHHHHHheeecC
Confidence 34445543 34455677776665554443322 346888888887666655555555555555533
No 39
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.79 E-value=1.8e-16 Score=167.32 Aligned_cols=354 Identities=14% Similarity=0.189 Sum_probs=217.4
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccchhHHH-HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIVSLPFA-VLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a-~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
++++|+.+.++.++..++++||+|++.+|.. ++.+|...++.+++.+++....+..+.|..... |.+| ...
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~-P~~G-------g~y 76 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPSVLLAYIIGGVAAYIIMRALGEMSVHN-PAAS-------SFS 76 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-------CHH
Confidence 3478899999999999999999999998854 777886446666777777666665555554433 3444 444
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
+.+++.+||. ..+++.+..++.....+.......+.++..++++. +...+.++.. +++-..-.+..+..++++.+.
T Consensus 77 ~y~~~~~G~~-~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~l~~~ln~~gv~~~~~~~~~~ 152 (457)
T PRK10580 77 RYAQENLGPL-AGYITGWTYCFEILIVAIADVTAFGIYMGVWFPTV--PHWIWVLSVV-LIICAVNLMSVKVFGELEFWF 152 (457)
T ss_pred HHHHHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC--ChHHHHHHHH-HHHHHHHHccchhHHHHHHHH
Confidence 5667799994 56777777777766666665666667776666542 2223322222 222222334667777777665
Q ss_pred HHHHHHHHHhheee-------eeeec-CccCCcc-cc----ccccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 276 TMSHIVINVVILGY-------CLLQI-GDWGWGK-VK----WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 276 ~~~~~~~~~iii~~-------~~~~~-~~~~~~~-~~----~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
++.++..+++++.. ..... ...+.++ .. ++..+.++..++....|+|.|.+......+|+|||+| .
T Consensus 153 ~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~fsf~G~e~~~~~a~E~knP~k~i 232 (457)
T PRK10580 153 SFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSNGWLGMVMSLQMVMFAYGGIEIIGITAGEAKDPEKSI 232 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCcchHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhHH
Confidence 55444433222111 11110 0001101 00 1112334667888999999999999999999999999 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccC-Cc---hh---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHh
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQN-DT---QQ---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETN 414 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~-~~---~~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~ 414 (530)
||++..+..++.++|+...+......+. +. .+ ...+.+...+...++++...++.+.+.+..++...|.++..
T Consensus 233 PrAi~~~~~~~~~~y~~~~~~~~~~~p~~~i~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~ 312 (457)
T PRK10580 233 PRAINSVPMRILVFYVGTLFVIMSIYPWNQVGTNGSPFVLTFQHMGITFAASILNFVVLTASLSAINSDVFGVGRMLHGM 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHheecccCCCCccCChHHHHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888888887765443221111 11 01 12233333345567777777888888888889999998664
Q ss_pred hccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhccc--HHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 415 YFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPH--FAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 415 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
- |++..|+. .| ++++|...+++..+..++..++....|+ +..+.++ +.....+.|+++++.++++||+
T Consensus 313 a---rdg~lP~~~~kv~-~~~~P~~Ai~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~lr~~ 385 (457)
T PRK10580 313 A---EQGSAPKIFSKTS-RRGIPWVTVLVMTTALLFAVYLNYIMPENVFLVIASL--ATFATVWVWIMILLSQIAFRRR 385 (457)
T ss_pred H---hCCCcCHHHHhhC-CCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 3 34555543 23 2456776666665444443444434442 4455555 2334568888998888877643
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.78 E-value=1.2e-16 Score=167.92 Aligned_cols=337 Identities=11% Similarity=0.168 Sum_probs=215.8
Q ss_pred HHhhhhccccchhHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhhCchhHHHH
Q psy17648 132 VTNAIQGMFIVSLPF-AVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARA 210 (530)
Q Consensus 132 l~~~~iG~GiL~lP~-a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~G~~~g~~~ 210 (530)
.++++||+|++..|. +++++|...++..++.+++....+..+.|..... |++| .....+++.+||. ..+.
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~~ll~~~i~gi~~~~~al~~aEL~s~~-P~~G-------g~y~y~~~~~G~~-~gf~ 73 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVAT-PDTG-------SFSTYADKAIGRW-AGYT 73 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCC-------CHHHHHHHHcChH-HHHH
Confidence 468899999998885 6889997556667777777666665555544332 3444 5666777799995 5677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhh--cccchhhhHHHHHHHHHHHHHHHhhee
Q psy17648 211 VNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGF--LKSLHHVSMLSFWCTMSHIVINVVILG 288 (530)
Q Consensus 211 ~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~l~~~s~~~~~~~~~~~~iii~ 288 (530)
+.+..++.....+.......+..++.+.++ .+...+ ..++++.+.. ...+|..+.++.+.++.++...++++.
T Consensus 74 ~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~l~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii 148 (446)
T PRK10197 74 IGWLYWWFWVLVIPLEANIAAMILHSWVPG--IPIWLF---SLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIF 148 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CcHHHH---HHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHH
Confidence 777777766555555555555555555543 122222 2222222222 336777888887777666655443332
Q ss_pred eeeeec----Cc---cCCccc----c-ccccccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHHHHHHHHHH
Q psy17648 289 YCLLQI----GD---WGWGKV----K-WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDWSHIAAAIF 355 (530)
Q Consensus 289 ~~~~~~----~~---~~~~~~----~-~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~s~~~~~~~ 355 (530)
.++... +. .+..+. . .+..+.++..++....|+|.|.+.+....+|+|||+| .||++..++..+.++
T Consensus 149 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~r~iPrai~~~~~~i~i~ 228 (446)
T PRK10197 149 LGAVAISGFYPYAEVSGISRLWDSGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPEKHIVRATNSVIWRISIF 228 (446)
T ss_pred HHHHHhcCCCCCCCCCcchhcCCCCCCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHH
Confidence 222100 10 010000 0 1112346778999999999999999999999999998 599999999999999
Q ss_pred HHHHHhHhhhh--ccCC---c---hhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCccc
Q psy17648 356 KSMFGYLCFLT--FQND---T---QQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIW 427 (530)
Q Consensus 356 Y~~~g~~gy~~--fG~~---~---~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~~ 427 (530)
|++..++.... +.+. . ...+......++...+++++..++++.+.+..++...|.++..- |++..|+.+
T Consensus 229 Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~g~~~~~~ii~~~i~~~~~~~~n~~~~~~sR~l~a~a---rdg~lP~~~ 305 (446)
T PRK10197 229 YLCSIFVVVALIPWNMPGLKAVGSYRSVLELLNIPHAKLIMDCVILLSVTSCLNSALYTASRMLYSLS---RRGDAPAVM 305 (446)
T ss_pred HHHHHHHHheecCcCcccccccCcHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---cCCCcCHHH
Confidence 98876653322 2211 0 11234445555567788888889999999999999999997653 445566542
Q ss_pred cC--CcchhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 428 HL--DGELKVWGLMFRVAVVLFTIMMAVFIP--HFAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 428 ~~--~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
.+ ++++|...+++..++.++..++....| .++.++++.+... .+.|+++++.++++||
T Consensus 306 ~~~~~~~~P~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~--li~y~~~~~a~i~lr~ 367 (446)
T PRK10197 306 GKINRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIA--LLVYLVIAVSQLRMRK 367 (446)
T ss_pred HhhCcCCCcHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence 22 446787777776655555555543333 4788888866555 4777788777777654
No 41
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.78 E-value=3.5e-16 Score=164.51 Aligned_cols=350 Identities=13% Similarity=0.110 Sum_probs=209.1
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
++++|+.+.++.+...++.++|......+.+++.+|+.+ ++..++.++.....+..+.|..... |++| ...
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~-P~~G-------g~y 74 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMI-PTAG-------GGY 74 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCC-------CHH
Confidence 347899999999999999999844455678888999864 4555555555544444444444333 4445 344
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
..+++.+|+. ..++..+..++........+....++++..++|+. +...+.++. .+++-+.-.+.++..++++.+.
T Consensus 75 ~~~~~~~G~~-~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~~--~~~~~~~~~-~~~~~~ln~~g~~~~~~i~~~~ 150 (442)
T TIGR00908 75 GFARRAFGPW-GGFLAGTAILIEFAFAPPAIACFIGAYCESLFPVG--PGWLAALVF-YIVFIGINILGVGEAAKLEFVV 150 (442)
T ss_pred HHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--chhHHHHHH-HHHHHHHHHHHHHHHHhHHHHH
Confidence 4667799995 56777777777777777777888888888777642 121111111 1111222234677777777766
Q ss_pred HHHHHHHHHhheeeeeeecCccC-----Ccccc-c-cccccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHH
Q psy17648 276 TMSHIVINVVILGYCLLQIGDWG-----WGKVK-W-TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDW 347 (530)
Q Consensus 276 ~~~~~~~~~iii~~~~~~~~~~~-----~~~~~-~-~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~ 347 (530)
++..++.+++++..........+ +++.. + +..+.++..++...+|+|.|++....+.+|+|||+| .||++..
T Consensus 151 ~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~r~iprai~~ 230 (442)
T TIGR00908 151 TAVAIIALGVFIGAMVPHFDSANLFNGPQTGASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAAEETKNPKRDIPRGLIG 230 (442)
T ss_pred HHHHHHHHHHHHHHHhccCCHHHhccCCccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCHHHHH
Confidence 65554443322221111100000 00000 0 011224567788889999999999999999999988 5999999
Q ss_pred HHHHHHHHHHHHHhHhhhh-----ccCCch--hhhhcc-CCC-chHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccC
Q psy17648 348 SHIAAAIFKSMFGYLCFLT-----FQNDTQ--QVITNN-FDS-AWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKG 418 (530)
Q Consensus 348 s~~~~~~~Y~~~g~~gy~~-----fG~~~~--~~il~~-~~~-~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~ 418 (530)
+..++.++|+.+.+..... ..+... ..+... +++ .+...++.+...++++.+....++...|.++.. .
T Consensus 231 s~~~~~~~~~~~~~~~~g~~~~~~l~~~~~p~~~~~~~~~g~~~~~~~~i~~~~~~~~~~s~~~~~~~~sR~l~a~---a 307 (442)
T TIGR00908 231 AILTLLALAAGILVVGPGAADAKELMGSNNPLPEALESIYGGSTWMSQFVNLVGLFGLIASFHGIIYGYSRQIFAL---S 307 (442)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHhCCCcchHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 9999888887765432211 111100 011111 111 233445555556667777788888888998664 3
Q ss_pred CCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 419 GDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 419 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
|++..|+. .| ++++|+..+++..++.++..+. .+.+.++++.+ ....+.|+++++.++++|++
T Consensus 308 rdg~lP~~~~~~~-~~~~P~~Ail~~~~i~~~~~l~----~~~~~l~~~~~--~~~~~~y~~~~~a~i~lr~~ 373 (442)
T TIGR00908 308 RAGYLPESLSKVN-RKKAPVLAIVVPGVIGFGLSLT----GQTALIILVSV--FGAIISYVLSMAAHFTLRIR 373 (442)
T ss_pred hcCCccHHHHHhC-CCCCcHHHHHHHHHHHHHHHHh----ccHHHHHHHHH--HHHHHHHHHHHHHHHHHHhc
Confidence 45556653 34 5677877766655444433322 35555555532 34567777887777766543
No 42
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.75 E-value=1.5e-15 Score=159.09 Aligned_cols=347 Identities=18% Similarity=0.206 Sum_probs=212.9
Q ss_pred ccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHh
Q psy17648 123 INEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYIC-CYTGKILVECLYEIDPNTGQRVRVRNSYVSIASEC 201 (530)
Q Consensus 123 ~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~-~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~ 201 (530)
.++++++...++.++|+|++..| .....|...++..++.+.+. ...+....|.... .|+.| ......++.
T Consensus 1 l~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~~~~~~~i~~~~~~l~~a~~~~el~~~-~p~~G-------G~y~~~~~~ 71 (426)
T PF13520_consen 1 LGLFSAIALVIGSIIGSGIFFSP-AAASAGPSAILAWIIAALLFFLPIALSYAELSSA-YPSAG-------GIYVWVSRA 71 (426)
T ss_dssp B-HHHHHHHHHHCHHTTTTTTHH-HHTCTGCHHHHHHHHHHHHHHHHHHHHHHHHHTT-TTSST-------THHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcc-CCCcC-------eeeehhhhc
Confidence 36899999999999999999999 77777765444444444443 3444444454332 34444 455666779
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC-CccchhHHHHHHHHHH--HhhhhcccchhhhHHHHHHHHH
Q psy17648 202 FGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD-GAIDTRSWMMLIGIFL--IPLGFLKSLHHVSMLSFWCTMS 278 (530)
Q Consensus 202 ~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~-~~~~~~~~~~i~~~~~--~pl~~~~~l~~l~~~s~~~~~~ 278 (530)
+||++ .++..+..++.....+.++.....+.+...+.. ...+.....++..+++ +-+...+..|..++++.+.++.
T Consensus 72 ~g~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 150 (426)
T PF13520_consen 72 FGPFW-GFIVGWLYWVAYILSLASVASSFASYLLSLFGPDLNPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQNILTVI 150 (426)
T ss_dssp H-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTGGGTCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ccccc-hhcccceeEEEeeccccccccchhhhhhhccccccccccchheeeeecccccceEeeechhhhhhhhhhhhhhh
Confidence 99965 566777777776666666667777777666532 1111222222222222 2233334778888888887777
Q ss_pred HHH-HHHhheeeeeeecCccCCc------cccccccccchhHHHHHhhhhcccceecccccccccCccchhhHHHHHHHH
Q psy17648 279 HIV-INVVILGYCLLQIGDWGWG------KVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIA 351 (530)
Q Consensus 279 ~~~-~~~iii~~~~~~~~~~~~~------~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~~~i~~s~~~ 351 (530)
.++ .+++++..++......+.+ +...+..+..+..++...+|+|.|.+..+.+.+|+|| ++.||++..+..+
T Consensus 151 ~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~k~-k~ip~ai~~~~~~ 229 (426)
T PF13520_consen 151 KIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFFPSGWPGFLAGFSVAFFAFSGFEAIASLAEENKN-KTIPRAIIISIII 229 (426)
T ss_dssp HHHHHHHHHHHHHHHSTTCCHHH----SHSCSSCSSSSHHHHHHHHHGGGGTTTTHHHHGGGGSSS-HHHHHHHHHHHHH
T ss_pred hhhhhhhhheeEEEeeecccccccccccccccCCccccchhhHHHHHHhhcccccccccccccccc-hhheeecccchhH
Confidence 663 4333333333222111111 0111223444678999999999999999999999998 6789999999999
Q ss_pred HHHHHHHHHhHhhhhccCCchh----------hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCC
Q psy17648 352 AAIFKSMFGYLCFLTFQNDTQQ----------VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDS 421 (530)
Q Consensus 352 ~~~~Y~~~g~~gy~~fG~~~~~----------~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~ 421 (530)
+.++|.+..+......+++... .+.+....++...++.+...++.+.+.+..+....|.++..-. ++
T Consensus 230 ~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~l~~~a~---d~ 306 (426)
T PF13520_consen 230 VAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSINAFIFGASRLLYAMAR---DG 306 (426)
T ss_dssp HHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT
T ss_pred HHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccchhhcchhhccccccc---cc
Confidence 9999999877766554433111 1112222236778888889999999999999999999977642 34
Q ss_pred CCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHhHhhhhHHHhhhhhhHHhhc
Q psy17648 422 QFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIP--HFAILMGFIGSFTGTMLSFIWPCYFHLKLK 486 (530)
Q Consensus 422 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip--~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~ 486 (530)
..|+. .| +++.|....++..++..+..++....| +++.+.+... ....+.++++.+.+++.|
T Consensus 307 ~lP~~~~~~~-k~~~P~~a~~~~~~i~~i~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~ 373 (426)
T PF13520_consen 307 VLPKWFAKVN-KFGTPYNAIILVAVISSILLLLFLFIPQSSFDILVSLSS--VGYLISYILVILAVLFLR 373 (426)
T ss_dssp SSSGGGGTTS-SSSSCHHHHHHHHHHHHHHHHHTTTSSSSHHHHHHHHHH--HHTHHHHHHHHHHHHHTH
T ss_pred chhhhhhhcc-ccCCceeeehhhhHHHHHHHHHHHhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence 45543 33 445566555544444323222222333 5777777733 344555666665555544
No 43
>KOG1286|consensus
Probab=99.69 E-value=1.1e-15 Score=161.08 Aligned_cols=360 Identities=13% Similarity=0.098 Sum_probs=234.9
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccc-hhHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCH
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIV-SLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSY 194 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL-~lP~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y 194 (530)
.+.+|+++.++-.+.-++++||+|++ ....++++.|-.+ ++..++.+..+..++.-+.|...+.+...| ++
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aG-------s~ 98 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAG-------SF 98 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheecccccc-------cc
Confidence 35889999999999999999999995 5778899988775 667777777776666555554443332113 66
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-------CCCccchhHHH--HHHHHHHHhhhhcc--
Q psy17648 195 VSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSF-------PDGAIDTRSWM--MLIGIFLIPLGFLK-- 263 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~-------~~~~~~~~~~~--~i~~~~~~pl~~~~-- 263 (530)
...+.+.+|+.| .+.+.+.+++..+..+.+.+...+.+++.+. .....+...|. .++.++++.+..++
T Consensus 99 ~~ya~~~i~e~~-aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~~~~~~~~~~~~~~~~~~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 99 YTYAYRFVGESL-AFAIGWNYLLEYVIGLAAEARAWSSYLDYWTGASLIGILVDTVNPGGWIPDFLAFILIINLFGVLAY 177 (554)
T ss_pred eeeeeeeeCcHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccccccccCCCCCccHHHHHHHHHHHHHHHHhhc
Confidence 667777899965 5788888999988899999999999988875 11122222232 23334444455444
Q ss_pred -cchhhhHHHHHHHHHHHHHHHhheeeeeeecC--c-cCC---cc-cccc-ccccchhHHHHHhhhhcccceeccccccc
Q psy17648 264 -SLHHVSMLSFWCTMSHIVINVVILGYCLLQIG--D-WGW---GK-VKWT-LDMENFPISLGVIVFSYTSQIFLPTLEGN 334 (530)
Q Consensus 264 -~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~--~-~~~---~~-~~~~-~~~~~~~~a~~~~~faf~~~~~i~~i~~e 334 (530)
..++...+..+.++..++.+.+++..+..... . .+. ++ -... ..+.++..++-+..|+|.|-+.+-...+|
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~gf~Gv~s~~~~~~fsf~G~e~va~~a~E 257 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPFGFKGVLSGAATAFFSFIGFELVATTAEE 257 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCCCcceeeHHHHHHHHHHhhHHHHHHHHHh
Confidence 34444444444444444444444444433221 1 111 11 0111 23677889999999999999999999999
Q ss_pred ccCccc-hhhHHHHHHHHHHHHHHHHHhHhhh--hccCC-chh------hhhccCCCchHHH---HHHHHHHHHHHHhcc
Q psy17648 335 LIDRSK-FDWMLDWSHIAAAIFKSMFGYLCFL--TFQND-TQQ------VITNNFDSAWFRG---FVNFFLVVKALLSYP 401 (530)
Q Consensus 335 m~~p~~-~~~~i~~s~~~~~~~Y~~~g~~gy~--~fG~~-~~~------~il~~~~~~~~~~---i~~~~~~i~~~~s~p 401 (530)
-|||+| .|+++..++.+++++|++..+.-=+ -|.+. ..+ ...-.....+... +++++..++++++.+
T Consensus 258 ~kNP~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL~~~~s~~n 337 (554)
T KOG1286|consen 258 AKNPRKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGILIGLLSSLN 337 (554)
T ss_pred ccCCcccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHHHHHHHHHH
Confidence 999998 6999999999999999887665322 12220 111 1111122223344 899999999999999
Q ss_pred chhhhHHHHHHHhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhh--cccHHHHHHHHHhHhhhhHHHhhhh
Q psy17648 402 LPYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVF--IPHFAILMGFIGSFTGTMLSFIWPC 479 (530)
Q Consensus 402 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~--ip~~~~li~l~Ga~~~~~~~~i~P~ 479 (530)
..+|+..|.+..+..++.-+++-...+.+ ..|+...++..++.++.++..-. -..|+.++++.| .++.++|.+-+
T Consensus 338 ~~~y~~sR~l~amA~~G~~Pk~f~~v~~~-g~P~~a~~v~~~~~~l~~~~~~~~~~~~f~~L~~~~s--i~tl~~w~~i~ 414 (554)
T KOG1286|consen 338 SSLYAGSRVLYALAKDGLAPKFFARVDRR-GVPLVAVLVSGLFGALAALNFSLGAATVFNWLVNLSS--IGTLFAWTLVA 414 (554)
T ss_pred HHhHHhHHHHHHHHhcCCcchHHhhcCCC-CCchhHHHHHHHHHHHHHHHhccccchHHHHHHHHHh--HHHHHHHHHHH
Confidence 99999999998874333222222223333 56766666555555554444422 123688888854 45678888888
Q ss_pred hhHHhhcC
Q psy17648 480 YFHLKLKG 487 (530)
Q Consensus 480 l~~l~~~~ 487 (530)
+.|++.|+
T Consensus 415 ~~~i~~R~ 422 (554)
T KOG1286|consen 415 LSHLRFRY 422 (554)
T ss_pred HHHeeeee
Confidence 88888764
No 44
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.68 E-value=4e-14 Score=150.04 Aligned_cols=358 Identities=13% Similarity=0.124 Sum_probs=227.6
Q ss_pred ccCCCCccHHH-HHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 117 ERSRHKINEWQ-AAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 117 ~~~~~~~s~~~-~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
++.+|+.+.++ .....++.++|.|++.+|......+....+.+++.+++....+....|... .-|+.| .+.
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~~~~~~li~~~~~~~~a~~~~el~~-~~p~~G-------G~y 79 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPAAILAWLIAGIIILFLALSYAELSS-AIPSAG-------GAY 79 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCCC-------Cee
Confidence 34677888888 888999999999999998776655421222245555555555445555444 234444 455
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCc---cchhHHHHHHHHHHHhhhh--cccchhhhH
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGA---IDTRSWMMLIGIFLIPLGF--LKSLHHVSM 270 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~---~~~~~~~~i~~~~~~pl~~--~~~l~~l~~ 270 (530)
+..++.+||++ .+++.+..++.......+........+..+++... .+...+.++..+++..+.+ .+..+..++
T Consensus 80 ~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~G~~~~~~ 158 (466)
T COG0531 80 AYAKRALGPRL-GFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPGLLSIGPLLIILIALALIALLTLLNLRGIKASAK 158 (466)
T ss_pred eehhhhcCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCCchHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 56677999865 47888888887777777777777777777766421 1112233333333333333 347788888
Q ss_pred HHHHHHHHHHHHHHhheeeeeeecCccCCcccc----ccccccchhHHHHHhhhhcccceecccccccccCccc-hhhHH
Q psy17648 271 LSFWCTMSHIVINVVILGYCLLQIGDWGWGKVK----WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWML 345 (530)
Q Consensus 271 ~s~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~----~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i 345 (530)
++.+..+..+...+++...++...+........ .......+..++....|+|.|.+......+|+|||+| .||++
T Consensus 159 ~~~~~~~~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a~E~knp~r~ip~ai 238 (466)
T COG0531 159 INSIITILKIIILLIFIILGLFAFGFSNGNLFAPFNPGGGSFGGILAAILLAFFAFTGFEAIATLAEEVKNPKRTIPRAI 238 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCccccccCCCcccccchHHHHHHHHHHHHHHhhcHHHHHHHHHHhcCccccccHHH
Confidence 888877777766555544433322221111111 1122335678888999999999999999999999987 59999
Q ss_pred HHHHHHHHHHHHHHHhHhhhhccCC-chh--------hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 346 DWSHIAAAIFKSMFGYLCFLTFQND-TQQ--------VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 346 ~~s~~~~~~~Y~~~g~~gy~~fG~~-~~~--------~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
..++..++++|++..+......+++ ... .+.......+...++.+...++.+.+.........|.+...
T Consensus 239 i~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~~~~~-- 316 (466)
T COG0531 239 ILSLLIVLILYILGALVIVGVLPAGDLAASAPSAPLALAALFGGGNWGAIIIAILALLSLFGSLLAWILAVSRVLYAM-- 316 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHhccCCCccHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999998887766555432 111 11111122355667777788888888888888888888654
Q ss_pred cCCCCCCCcc---ccCCcchhhHHHHHHHHHHH-HHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 417 KGGDSQFPSI---WHLDGELKVWGLMFRVAVVL-FTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 417 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
.|++.+|.. .|.+.+.|....+...++.. +..........++.+.++ +.....+.|.++.+..++.+++
T Consensus 317 -ardg~lP~~~~~~~~~~~~P~~a~~~~~ii~~~l~~~~~~~~~~~~~l~~~--~~~~~~~~y~~~~~~~~~~~~~ 389 (466)
T COG0531 317 -ARDGLLPKFFAKVNPKGRTPVIALILTGIISLILLLLFPLSSIAFNALVSL--ASVAFLIAYLLVALALLVLRRK 389 (466)
T ss_pred -HhCCCccHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhccccHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhc
Confidence 335566653 34455567766666655555 111111112246777777 5555678888888888877654
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.65 E-value=3.3e-13 Score=143.16 Aligned_cols=354 Identities=10% Similarity=0.016 Sum_probs=194.2
Q ss_pred CccCCCCccHHHHHHHHHhhh-hccccchhH-HHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCC
Q psy17648 116 GERSRHKINEWQAAWNVTNAI-QGMFIVSLP-FAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNS 193 (530)
Q Consensus 116 ~~~~~~~~s~~~~~~~l~~~~-iG~GiL~lP-~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~ 193 (530)
+++++|+.+.++.+..-++.+ +|+|+++++ .+..++|...+..+++.++.....+..+.|..... |++|+
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~~~~~~li~~i~~l~~als~aEL~s~~-P~aGG------- 79 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPAFFWTWPVVFVGQLLVALNFAELAARY-PISGA------- 79 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCCCC-------
Confidence 345889999999999988875 899998877 55788886324445555555444444444433322 44453
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC-------CCcc--chhH--HHHHHHHHHHhhhh-
Q psy17648 194 YVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFP-------DGAI--DTRS--WMMLIGIFLIPLGF- 261 (530)
Q Consensus 194 y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~-------~~~~--~~~~--~~~i~~~~~~pl~~- 261 (530)
....+++.+||.+ .+++.+..++.....+..........+..+++ +... +... ..++..++++....
T Consensus 80 ~Y~~~~~~~g~~~-gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 158 (475)
T TIGR03428 80 IYQWSRRMGGEVI-GWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQIIGEDPTLTSPSGAANAVLLGSVLLVLTTVI 158 (475)
T ss_pred HHHHHHHHcCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCccccCCCchHHHHHHHHHHHHHHHHH
Confidence 3445566899954 56677666665444343433344444332211 1111 1111 11222222222322
Q ss_pred -cccchhhhHHHHHHHHHHHHHHHhheeeeeeecCcc---CCccc--ccccc-ccchhHHHHHhhhhcccceeccccccc
Q psy17648 262 -LKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDW---GWGKV--KWTLD-MENFPISLGVIVFSYTSQIFLPTLEGN 334 (530)
Q Consensus 262 -~~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~---~~~~~--~~~~~-~~~~~~a~~~~~faf~~~~~i~~i~~e 334 (530)
....|..++++.+.++..+..++++++..+...... .+++. .+..+ ...+..+.....|+|.|.+....+.+|
T Consensus 159 n~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~aeE 238 (475)
T TIGR03428 159 NCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVMVGFGSAGELSEE 238 (475)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeecCCCCCCccHHHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 336777888887776665554443333222111110 01111 00011 112445666788999999999999999
Q ss_pred ccCccc-hhhHHHHHHHHHHHHHHHHHhHhhhhccCCch--------hhhhccCCCchHHHHHHHHHHHHHHHhccchhh
Q psy17648 335 LIDRSK-FDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQ--------QVITNNFDSAWFRGFVNFFLVVKALLSYPLPYY 405 (530)
Q Consensus 335 m~~p~~-~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~--------~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~ 405 (530)
+|||+| .||++..++.++.++|.++.+......++... +.+..+.-......+...+..++.+.+......
T Consensus 239 ~knP~r~iPrai~~s~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~ 318 (475)
T TIGR03428 239 TKNPRRVAPRTILTALSVSALGGGLMILGALMAAPSLTDGRLAAEGLPYVLSAVLDSPWGTVLLVDVAIAILVCTLAIQT 318 (475)
T ss_pred hcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHhhcCCCchHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 59999999998887776655544433332111 111111111122233445556677777777788
Q ss_pred hHHHHHHHhhccCCCCCCCc-----cccCCcchhhHHHHHHHHHHHHHHHHHhhc-ccHHHHHHHHHhHhhhhHHHhhhh
Q psy17648 406 AACELLETNYFKGGDSQFPS-----IWHLDGELKVWGLMFRVAVVLFTIMMAVFI-PHFAILMGFIGSFTGTMLSFIWPC 479 (530)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ia~~i-p~~~~li~l~Ga~~~~~~~~i~P~ 479 (530)
...|.++..- |++..|. +.|.+.++|....++..++.++..++...- ..|+.++++ +.....+.|++|.
T Consensus 319 ~~sR~~~a~A---rdg~lP~s~~~~~v~~r~~tP~~A~~l~~~i~~~~~~i~~~~~~af~~l~s~--~~~~~~~~Y~~~~ 393 (475)
T TIGR03428 319 AGSRLMFSMA---RDGKLPASAQLSRVHPRTGTPILPSIVIGVLCIGILLINVGNSALFATLASV--CIVLIYLAYLLVT 393 (475)
T ss_pred HHHHHHHHHH---hcCCCcchHHhcccCCCCCCcHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 8889986643 3445553 234345677766555554444333333211 246677776 3444567777765
Q ss_pred hhHH
Q psy17648 480 YFHL 483 (530)
Q Consensus 480 l~~l 483 (530)
+..+
T Consensus 394 ~~~l 397 (475)
T TIGR03428 394 VPLL 397 (475)
T ss_pred HHHH
Confidence 4444
No 46
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.63 E-value=4.2e-13 Score=142.78 Aligned_cols=358 Identities=9% Similarity=0.034 Sum_probs=198.7
Q ss_pred ccCCCCccHHHHHHHHHhhhhc--cccch-hHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCC
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQG--MFIVS-LPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRN 192 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG--~GiL~-lP~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~ 192 (530)
++++|+.+.++.+...++. +| +|++. .+.+++++|..+ +..+++.+++....+..+.|..... |++|
T Consensus 8 ~~l~r~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~-P~~G------- 78 (482)
T TIGR00907 8 PELKREFSLWSIFGFAFSI-SNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAY-PTSG------- 78 (482)
T ss_pred ceeecccchhHHHHHHHHH-HHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhC-CCCc-------
Confidence 4578899999988888884 44 67744 556788888764 6667777777766666555554432 4445
Q ss_pred CHHHHHHHhhCchhH---HHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCC--CccchhHHHHHHHHHHHhhhhc-
Q psy17648 193 SYVSIASECFGPVWG---ARAVNLAQMIELLMTCILYVVVCGDLMVGS----FPD--GAIDTRSWMMLIGIFLIPLGFL- 262 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g---~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~----~~~--~~~~~~~~~~i~~~~~~pl~~~- 262 (530)
.....+++++|++++ .+++.+..++.....+.+.....++.+... .++ ...+.....++..++++.++.+
T Consensus 79 g~y~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~in 158 (482)
T TIGR00907 79 GQYFWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTPGREYIPTRWHIFGIMIGIHLIHALIN 158 (482)
T ss_pred cHHHHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccCchhhhhHHHHHHHHHHHH
Confidence 444455567775443 345555555555554444444444444322 111 1111111122222222222332
Q ss_pred -ccchhhhHHHHHHHHHHHHHHHhheeeee-eecCc---c--CCccccccc---ccc--chhHHHHHhhhhcccceeccc
Q psy17648 263 -KSLHHVSMLSFWCTMSHIVINVVILGYCL-LQIGD---W--GWGKVKWTL---DME--NFPISLGVIVFSYTSQIFLPT 330 (530)
Q Consensus 263 -~~l~~l~~~s~~~~~~~~~~~~iii~~~~-~~~~~---~--~~~~~~~~~---~~~--~~~~a~~~~~faf~~~~~i~~ 330 (530)
...|..++++.+..+..++..+++++..+ ...++ . .+++..... ... .+..++....|+|.|.+....
T Consensus 159 ~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~fsf~G~e~~~~ 238 (482)
T TIGR00907 159 SLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNSTGGWKPGGFAFLLGLLNPAWSMTGYDGTAH 238 (482)
T ss_pred HhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCCCCCcCCCchhhhhhhhhhHHHhcCcchhhH
Confidence 35566666666655444443332221111 11111 0 111111110 111 244566667899999999999
Q ss_pred ccccccCccc-hhhHHHHHHHHHHHHHHHHHhHhhhhccCC------ch-h---hhhcc-CCCchHHHHHHHHHHHHHHH
Q psy17648 331 LEGNLIDRSK-FDWMLDWSHIAAAIFKSMFGYLCFLTFQND------TQ-Q---VITNN-FDSAWFRGFVNFFLVVKALL 398 (530)
Q Consensus 331 i~~em~~p~~-~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~------~~-~---~il~~-~~~~~~~~i~~~~~~i~~~~ 398 (530)
+.+|+|||+| .||++..+..+..++|++..+..+...++. .. + .+..+ +..++...++.+...++.+.
T Consensus 239 ~a~E~knP~r~iP~Ai~~s~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 318 (482)
T TIGR00907 239 MAEEIENPEVVGPRAIIGAVAIGIVTGFCFNIVLFFSMGDIDSLISSTTGQPIAQIFYNALGNKAGAIFLLCLILVTSFF 318 (482)
T ss_pred HHHhcCChhhhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHhcCCCCChHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 9999999998 599999988877665444333333233321 00 0 11111 22223444566667777777
Q ss_pred hccchhhhHHHHHHHhhccCCCCCCC--cc---ccCCcchhhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHhHhhhh
Q psy17648 399 SYPLPYYAACELLETNYFKGGDSQFP--SI---WHLDGELKVWGLMFRVAVVLFTIMMAVF-IPHFAILMGFIGSFTGTM 472 (530)
Q Consensus 399 s~pl~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~-ip~~~~li~l~Ga~~~~~ 472 (530)
+....++...|.++..- |++..| +. .|.+.++|...+++..++..+..++... .+.++.++++ +.....
T Consensus 319 ~~~~~~~~~sR~l~a~a---rdg~lP~~~~f~~v~~~~~~P~~ai~~~~~i~~~~~~~~~~~~~~f~~l~~~--~~~~~~ 393 (482)
T TIGR00907 319 CAITCMTANSRMIYAFS---RDGGLPFSPLWSRVNPRTQVPLNAVWLSAVWIILIGLLGLGSSTAFQAIFSV--CTVALD 393 (482)
T ss_pred HHHHHHHHHHHHHHHHH---hcCCcCchHhhceeCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 88888999999996643 344555 33 3444467777666555444433222211 1357888887 444467
Q ss_pred HHHhhhhhhHHhhcCC
Q psy17648 473 LSFIWPCYFHLKLKGG 488 (530)
Q Consensus 473 ~~~i~P~l~~l~~~~~ 488 (530)
+.|.+|++.+++.+|+
T Consensus 394 i~y~~~~~~~l~~~~~ 409 (482)
T TIGR00907 394 VSYVIPIICKLAKGRN 409 (482)
T ss_pred HHHHHHHHHHHHhcCC
Confidence 8899999999877664
No 47
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.63 E-value=4.5e-13 Score=142.81 Aligned_cols=351 Identities=14% Similarity=0.136 Sum_probs=184.8
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHhhhhcCcC-CCCccccCCCHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCY-TGKILVECLYEIDPN-TGQRVRVRNSYVS 196 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~-~~~ll~~~~~~~~~~-~g~~~~~~~~y~~ 196 (530)
.+||++.++.+...+++++|.+ .+|.++++.|...++..++.+++... .+....|..... |+ +|+ .|.
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~~i~~~~i~~~~~~l~~al~~aEL~s~~-P~~aGG------~Y~- 74 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYSAIPWYILSAILFFIPFALMMAEYGSAF-KDEKGG------IYS- 74 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCCCc------HHH-
Confidence 4678999999999999999987 67988888887555555555444322 222233333222 32 353 455
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHH---HHHH-------HHHHHHhhhcccCCCCccch-hHHHHHHHHH--HHhhhhcc
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLM---TCIL-------YVVVCGDLMVGSFPDGAIDT-RSWMMLIGIF--LIPLGFLK 263 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~---~~~~-------y~i~~~~~l~~~~~~~~~~~-~~~~~i~~~~--~~pl~~~~ 263 (530)
..++++|+++|+... +..+..... .... +.++ +....+.++....+. ..+.++..++ ++-+...+
T Consensus 75 w~~~~~G~~~gf~~~-w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~t~vn~~ 152 (496)
T PRK15238 75 WMNKSVGPKFAFIGT-FMWFASYIIWMVSTASKIWIPFSTFIF-GKDTTQTWHFLGLNSTQVVGILAVIWMILVTFVASK 152 (496)
T ss_pred HHHHHcCchHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHc-CcchhhhhhhhcccchHHHHHHHHHHHHHHHHHHcc
Confidence 455599998775422 222222111 1111 1111 111111110001111 1222222222 22233346
Q ss_pred cchhhhHHHHHHHHHHHHHHH----hheeeeeeecCc--cCC--cccc--ccccc---cchhHHHHHhhhhcccceeccc
Q psy17648 264 SLHHVSMLSFWCTMSHIVINV----VILGYCLLQIGD--WGW--GKVK--WTLDM---ENFPISLGVIVFSYTSQIFLPT 330 (530)
Q Consensus 264 ~l~~l~~~s~~~~~~~~~~~~----iii~~~~~~~~~--~~~--~~~~--~~~~~---~~~~~a~~~~~faf~~~~~i~~ 330 (530)
.++..++++.++++..+...+ +.+...+..... ... ++.. ...++ .++..++....|+|.|.+....
T Consensus 153 g~~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~ 232 (496)
T PRK15238 153 GINKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTSPNPAYQSPIAVLSFVVFAIFAYGGIEAVGG 232 (496)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccCCCCccccchHHHHHHHHHHHHHHhHHHHHH
Confidence 788888888765544332211 110110000000 000 0000 00111 2355667788999999999999
Q ss_pred ccccccCccc-hhhHHHHHHHHHHHHHHHHHhHhhhhccC-Cch--h--h-------hhccCC-----------------
Q psy17648 331 LEGNLIDRSK-FDWMLDWSHIAAAIFKSMFGYLCFLTFQN-DTQ--Q--V-------ITNNFD----------------- 380 (530)
Q Consensus 331 i~~em~~p~~-~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~-~~~--~--~-------il~~~~----------------- 380 (530)
..+|+|||+| .||++..+..++.++|++..++....... +.. + + +.+++.
T Consensus 233 ~a~E~~~p~~~~p~ai~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~ 312 (496)
T PRK15238 233 LVDKTENPEKNFPKGIIIAAIVISIGYSLAIFLWGVSTNWQQVLSNKSVNLGNITYVLMNNLGYTLGHALGLSPAASLTL 312 (496)
T ss_pred HHHhccCCCccccHHHHHHHHHHHHHHHHHHHHHHhcCchhhcCCccccchhccHHHHHHHHHHHHHHHhccchhhhhhh
Confidence 9999999998 69999999999999998865443322110 000 0 0 001000
Q ss_pred CchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhcc-
Q psy17648 381 SAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIP- 456 (530)
Q Consensus 381 ~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip- 456 (530)
..+...++.++..++.+.+.....+..+|.+.. ..+++.+|+. .| +++.|...+++..++..+..++-...+
T Consensus 313 g~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~---~~~~g~~P~~f~k~n-k~g~P~~a~~~~~~i~~l~~~~~~~~~~ 388 (496)
T PRK15238 313 GVWFARITGLSMFLAYTGAFFTLSYSPLKQLIE---GTPKALWPKKMTKLN-KNGMPANAMWLQCIIVSVFILLVSFGGD 388 (496)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHh---hCccCcccHHHHhhC-cCCCcHHHHHHHHHHHHHHHHHHHhCch
Confidence 012223445666667777776667777776533 2334555654 23 456677776666555444432222221
Q ss_pred c----HHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 457 H----FAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 457 ~----~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
+ ++.++++ +.....+.|+++++.++|+||
T Consensus 389 ~~~~~f~~l~~l--~~~~~li~y~~~~~a~i~~r~ 421 (496)
T PRK15238 389 AASAFFNILTLM--ANVSMTLPYLFLAGAFPFFKK 421 (496)
T ss_pred hHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhh
Confidence 1 5667777 344567888888888887764
No 48
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.60 E-value=6.8e-13 Score=141.32 Aligned_cols=354 Identities=11% Similarity=0.102 Sum_probs=176.7
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHH--HHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCY--TGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~--~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
.+||++.++.++..+..+. ++..+| .+++.|+- .+.+.+++.+.+. .+....|.....++++| ....
T Consensus 2 ~~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~~-~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-------G~y~ 70 (507)
T TIGR00910 2 KAKKLSLFGFFAITASMVL--AVYEYP-TFATSGFH-LVFFLLLGGILWFIPVALCAAEMATVDGWEEG-------GIFA 70 (507)
T ss_pred CCcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-------Ceee
Confidence 3566999998888887775 446888 46777863 3333344433322 23223333222111334 3444
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHH----HHHHHhhhcccCCCCccchhHHHHHH-HHHHHh--hhhcccchhhh
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILY----VVVCGDLMVGSFPDGAIDTRSWMMLI-GIFLIP--LGFLKSLHHVS 269 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y----~i~~~~~l~~~~~~~~~~~~~~~~i~-~~~~~p--l~~~~~l~~l~ 269 (530)
.+++++|++||+ +..+..++......... ....+..+ . +++...+ ..+..+. .++++. +...+..+..+
T Consensus 71 wv~~a~G~~~Gf-~~~~~~W~~~~~~~~~~~~~~~~~~~y~~-~-~~~~~~~-~~~~~i~~l~i~~~~t~~n~~G~k~~~ 146 (507)
T TIGR00910 71 WVSNTLGERFGF-AAIFFGWFQIAIGFIPMIYFILGALSYIL-K-FPALNED-PIIKFIAALIIFWALAFSQFGGTKRTA 146 (507)
T ss_pred ehhhccCccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-c-CchhccC-cHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 566799998765 55555555433211111 11112221 1 1221111 1112221 122222 33344677777
Q ss_pred HHHHHHHHHHHHH-HHhheeeeeeecCccC-----Ccccccccccc--chhHHHHHhhhhcccceecccccccccCccc-
Q psy17648 270 MLSFWCTMSHIVI-NVVILGYCLLQIGDWG-----WGKVKWTLDME--NFPISLGVIVFSYTSQIFLPTLEGNLIDRSK- 340 (530)
Q Consensus 270 ~~s~~~~~~~~~~-~~iii~~~~~~~~~~~-----~~~~~~~~~~~--~~~~a~~~~~faf~~~~~i~~i~~em~~p~~- 340 (530)
+++.++.+..++. .++++..++......+ .+.....+++. +....+...+|+|.|.+......+|+|||+|
T Consensus 147 ~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~faf~G~E~~a~~a~E~knP~r~ 226 (507)
T TIGR00910 147 KIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFPDFSKVGTLVVFVAFIGAYMGVEASASHINELENPGRD 226 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCCCcccccHHHHHHHHHHHHhcHHHHHHHHHHccCCccc
Confidence 7766543322222 1111111111000000 00001111222 2334555679999999999999999999998
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhhhccCC-ch---h------hhhccCCC--chHHHHHHHHHHHHHHHhccchhhhHH
Q psy17648 341 FDWMLDWSHIAAAIFKSMFGYLCFLTFQND-TQ---Q------VITNNFDS--AWFRGFVNFFLVVKALLSYPLPYYAAC 408 (530)
Q Consensus 341 ~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~-~~---~------~il~~~~~--~~~~~i~~~~~~i~~~~s~pl~~~~~~ 408 (530)
.||++..+..++.++|.+.++......+++ .. + .+...+.. .+...++.++..+.++.+....++...
T Consensus 227 ~PrAi~~~~i~~~~l~~l~~~~i~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~l~~~~~~i~~~s 306 (507)
T TIGR00910 227 YPLAMILLMIAAICLDAIGGFSIAAVIPGKEINLSAGVIQTFQTLILHFAHEIEWLVKVIAALIAFGVLAEIASWIVGPS 306 (507)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHheecChhhcccchHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999987554322222211 11 1 11122221 244556666777777777888888888
Q ss_pred HHHHHhhccCCCCCCCccccC--CcchhhHHHHHHHHHHHHHHHHHhhc-c----cHHHHHHHHHhHhhhhHHHhhhhh-
Q psy17648 409 ELLETNYFKGGDSQFPSIWHL--DGELKVWGLMFRVAVVLFTIMMAVFI-P----HFAILMGFIGSFTGTMLSFIWPCY- 480 (530)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~i-p----~~~~li~l~Ga~~~~~~~~i~P~l- 480 (530)
|.+... .|++.+|+.+.+ +++.|...+++..++..+..++-... + .+..++++.. ....+.|+++.+
T Consensus 307 R~l~~~---ardg~lP~~~~k~nk~~~P~~a~~~~~~i~~l~~~~~~~~~~~~~~~f~~l~~~~~--~~~~i~Y~l~~~a 381 (507)
T TIGR00910 307 RGMFAA---AQKGLLPAAFAKMNKHEVPVPLVIIQGIITSIAGAILTFGGGGNNLSFLIAIALTV--VIYLCAYFLFFIG 381 (507)
T ss_pred HHHHHh---cccCCcCHHHHhhCcCCCcHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHH--HHHHHHHHHHHHH
Confidence 988543 445566654322 34567766666555544332222211 2 2333344433 334455555544
Q ss_pred -hHHhhcCCCCch
Q psy17648 481 -FHLKLKGGSLSI 492 (530)
Q Consensus 481 -~~l~~~~~~~~~ 492 (530)
+.+|.++++.+|
T Consensus 382 ~i~lr~k~p~~~r 394 (507)
T TIGR00910 382 YFVLILKHPDLKR 394 (507)
T ss_pred HHHHHHhcCCCCC
Confidence 444555444433
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.57 E-value=5.3e-12 Score=133.96 Aligned_cols=350 Identities=10% Similarity=0.099 Sum_probs=175.5
Q ss_pred CCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHhhhhcCcCCCCccccCCCHHHHHH
Q psy17648 121 HKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCY-TGKILVECLYEIDPNTGQRVRVRNSYVSIAS 199 (530)
Q Consensus 121 ~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~-~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~ 199 (530)
||++.+.-++..+.++++.. .+|.+ ++.|...++.+++.+++... .+....|.... -|+.| ......+
T Consensus 1 ~~~~~~~l~~~~~~~v~~~~--~~~~~-a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~-~P~~G-------G~y~~~~ 69 (474)
T TIGR03813 1 KKLTVVTLAIMNITAVVSLR--GLPAE-AEYGLSAAFYYLFAAIFFLVPVSLVAAELATA-WPEKG-------GVFRWVG 69 (474)
T ss_pred CcccHHHHHHHHHHHHHHhh--cchHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCC-------CceeeHh
Confidence 34677776666666665554 56755 57786545555555544332 33222333222 24444 3445667
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh---hcccC-CCCccch-hHHH-HHHHHHHHhhh--hcccchhhhHH
Q psy17648 200 ECFGPVWGARAVNLAQMIELLMTCILYVVVCGDL---MVGSF-PDGAIDT-RSWM-MLIGIFLIPLG--FLKSLHHVSML 271 (530)
Q Consensus 200 ~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~---l~~~~-~~~~~~~-~~~~-~i~~~~~~pl~--~~~~l~~l~~~ 271 (530)
+++|+++| +...+..++.........+.+.... ..... ....... .... .+..++.+.++ -.+.+|..+++
T Consensus 70 ~a~G~~~g-f~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~in~~gv~~~~~i 148 (474)
T TIGR03813 70 EAFGARWG-FLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATVDESLAGNKLYVLVSVLFVYWLATFIALRGVAAFTKV 148 (474)
T ss_pred hhcChhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCcccccccHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence 79999654 5555555554322111111111111 11110 0001111 1221 22222222233 34577777777
Q ss_pred HHHHHH-HHHHHHHhheeeeee-----ecCccCC--cccccc-ccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 272 SFWCTM-SHIVINVVILGYCLL-----QIGDWGW--GKVKWT-LDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 272 s~~~~~-~~~~~~~iii~~~~~-----~~~~~~~--~~~~~~-~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
+.+... .+++..++++..++. ..+..+. ++..+. .++..+..+ ..+.|+|.|.+......+|+|||+| .
T Consensus 149 ~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~af~G~e~~~~~a~E~knP~r~i 227 (474)
T TIGR03813 149 AKWGGIVGTIIPAAILVILGISYLLTGGESQIPLRWDDAFPDFTNFDNVVLA-ASIFLFYAGMEMNAVHVKDVDNPDKNY 227 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCHHHhCCCccccccHHHH-HHHHHHHhchhHhHHHHHhccCcccch
Confidence 765422 222211111111111 0011110 110000 122333333 3467999999999999999999998 6
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccCCch----h------hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHH
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQ----Q------VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELL 411 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~----~------~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~ 411 (530)
||++..+..++.++|++..+......+++.. + ........++...++.+...++.+.+....+...+|.+
T Consensus 228 PrAi~~~~~~~~~~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~l~~~~~~~~~~sR~~ 307 (474)
T TIGR03813 228 PIAILIAALGTVLIFVLGTLAIAFIIPREDISLTQSLLVAFDNAFHWAGLSWLGPILAFALAIGVLAGVVTWVAGPSSGM 307 (474)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccCHhhccccccHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998876654433332211 1 11122223344555666667777777777777788888
Q ss_pred HHhhccCCCCCCCccccC--CcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhH--hhhhHHHhhhhhhHHhhc
Q psy17648 412 ETNYFKGGDSQFPSIWHL--DGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSF--TGTMLSFIWPCYFHLKLK 486 (530)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~--~~~~~~~i~P~l~~l~~~ 486 (530)
... .|++..|+.+.+ +++.|...+.+..++..+..++....|+.+..++.+.+. ....+.|+++.+.++++|
T Consensus 308 ~a~---ardg~lP~~~~kv~k~~~P~~a~~~~~~~~~~l~~~~~~~~s~~~~f~~l~~~~~~~~~i~y~~~~~a~i~lr 383 (474)
T TIGR03813 308 LAV---AKAGYLPTFFQKTNKNGMPIHIMFVQGIAVSVLSVLFVVMPSVQAAFQILSQLTVILYLVMYLLMFASAIYLR 383 (474)
T ss_pred HHH---hhcCCCCHHHhccCCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 345556654322 345566655555544433333334455544444433322 234566777776666554
No 50
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.55 E-value=1.4e-12 Score=133.38 Aligned_cols=278 Identities=12% Similarity=0.137 Sum_probs=178.8
Q ss_pred CccHHHHHHHHHhhhhccccchhHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHH
Q psy17648 122 KINEWQAAWNVTNAIQGMFIVSLPFAVLR-GGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASE 200 (530)
Q Consensus 122 ~~s~~~~~~~l~~~~iG~GiL~lP~a~~~-~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~ 200 (530)
|.|.+|.++.++++++|+|++.+|....+ +|--+.+..++.++++.....++.+...+.+ ..+..++.++
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p---------~~~~~~~~~~ 72 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFP---------EKNFSEILSK 72 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCC---------CCCHHHHHHH
Confidence 57899999999999999999999987554 3322344455555555555555555554432 2379999999
Q ss_pred hhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-CCCccchhHHH-HHHHHHHHhhhhcccchhhhHHHHHHHHH
Q psy17648 201 CFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSF-PDGAIDTRSWM-MLIGIFLIPLGFLKSLHHVSMLSFWCTMS 278 (530)
Q Consensus 201 ~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~-~~~~~~~~~~~-~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 278 (530)
.+|| |...++.+...++....+.......++.++..+ |+ +..+. .+..++.+-....+.++..++++.+....
T Consensus 73 ~~Gk-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----tp~~~~~l~~l~~~~~~~~~Gi~~i~r~~~i~~~~ 147 (359)
T TIGR00912 73 YLGK-ILGRLLSILFILYFFLIAAYLIRIFADFIKTYLLPR----TPIIVIIILIIIVSIYIVRKGIEVLLRTAEILLII 147 (359)
T ss_pred HhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHH
Confidence 9999 666777777777777777666777777776543 32 22232 22222333333446888888888887766
Q ss_pred HHHH-HHhheeeeeeecCccCCcccccc--ccccchhHHH-HHhhhhcccceecccccccccCccchhhHHHHHHHHHHH
Q psy17648 279 HIVI-NVVILGYCLLQIGDWGWGKVKWT--LDMENFPISL-GVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAI 354 (530)
Q Consensus 279 ~~~~-~~iii~~~~~~~~~~~~~~~~~~--~~~~~~~~a~-~~~~faf~~~~~i~~i~~em~~p~~~~~~i~~s~~~~~~ 354 (530)
.+.. .++++.... ++.++++..+. .++.++..+. ....++|.+...+.....++|||+|.+|+...+..++.+
T Consensus 148 ~i~~~~~il~~~~~---~~~~~~~l~P~~~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~~~~~~~k~~~~~~~~~~~ 224 (359)
T TIGR00912 148 FLILFILVLILLAP---KLGNIKNLLPVLENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLSKKKKIKKSIIKAIIIGVL 224 (359)
T ss_pred HHHHHHHHHHHHhc---ccccHHHccCccccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhCChhhhHHHHHHHHHHHHH
Confidence 5554 232322222 22223332221 2333444444 378899999999999999999999999999999999999
Q ss_pred HHHHHHhHhhhhccCCchhh-------hhccCCCc-hHH---HHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 355 FKSMFGYLCFLTFQNDTQQV-------ITNNFDSA-WFR---GFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 355 ~Y~~~g~~gy~~fG~~~~~~-------il~~~~~~-~~~---~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
+|.++.+.....+|.+..++ ......-. -+. .+.-..-....+....+.+|...+.+.+.+.
T Consensus 225 ly~~~~~~~i~~lg~~~~~~~~~P~~~~~~~i~~~~f~eR~e~~~~~~w~~~~f~~~~~~~~~~~~~~~~~~~ 297 (359)
T TIGR00912 225 LYILTTFVSISVFGGNVTKNLYWPTLELIKLINIGDFIERFELIVMTFWVFIIFVKIAFYLYIAVKGLSKLFK 297 (359)
T ss_pred HHHHHHHHHHheecHHHhhhhcccHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99998888888887553321 11111111 111 1222233455566667788888888887763
No 51
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.50 E-value=7.3e-14 Score=148.38 Aligned_cols=342 Identities=17% Similarity=0.224 Sum_probs=214.1
Q ss_pred HHHhhhhccccc-hhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhhCchhHH
Q psy17648 131 NVTNAIQGMFIV-SLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGA 208 (530)
Q Consensus 131 ~l~~~~iG~GiL-~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~G~~~g~ 208 (530)
..+++++|+|++ ..+.+..++|.. .++.+++.+++...++.-+.+..+..+ +.| ++..++++.+||.+ .
T Consensus 5 ~~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G-------g~y~y~~~~lg~~~-G 75 (478)
T PF00324_consen 5 ISIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG-------GFYAYASRGLGPAL-G 75 (478)
T ss_pred eeHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc-------chhhhhhhccCCcC-C
Confidence 346788999995 577889999986 477788888888887777777665544 444 56667777999964 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc--CCCCccchhHH----HHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHH
Q psy17648 209 RAVNLAQMIELLMTCILYVVVCGDLMVGS--FPDGAIDTRSW----MMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVI 282 (530)
Q Consensus 209 ~~~~i~~~i~~~~~~~~y~i~~~~~l~~~--~~~~~~~~~~~----~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~ 282 (530)
..+.+..++.............+..++.+ +++.. ....| .+++.+++..+. ...++..+.+..+....+++.
T Consensus 76 f~~gw~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~l~-~~gv~~~~~~~~~~~~i~~~~ 153 (478)
T PF00324_consen 76 FAAGWAYWLSYIAAIAAEATAAGSFLQFWGYFPGLP-STWVWGILIAIIFILLITLLN-LFGVRVSGKIEFILTIIKLIA 153 (478)
T ss_pred ceeeHHHHHHHHHHHHhhhhhhhhhhcccccccccc-ccccccchhhhhhhhhhhhhh-hhhhhccchHHHHHHHHhhhH
Confidence 66777777777777777777777777766 44322 02222 222222222222 234555665555554444444
Q ss_pred HHhheeee-ee--e--cCccC--C-cc------ccc------cccccchhHHHHHhhhhcccceecccccccccCccc-h
Q psy17648 283 NVVILGYC-LL--Q--IGDWG--W-GK------VKW------TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-F 341 (530)
Q Consensus 283 ~~iii~~~-~~--~--~~~~~--~-~~------~~~------~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~ 341 (530)
.+..+..+ +. . .+... + ++ .+. ..++.++..++...+|+|.|.+......+|.|||+| .
T Consensus 154 li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P~k~I 233 (478)
T PF00324_consen 154 LIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEAKNPRKTI 233 (478)
T ss_pred hhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHHHhhhhhhcccccccccccccccCCCchhhh
Confidence 43333322 11 1 11111 0 00 000 112566889999999999999999999999999998 5
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccCCchh------------hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHH
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQ------------VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACE 409 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~------------~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~ 409 (530)
||++..++..+.++|++...+.-...+.+..+ ........++...++++...++++.+....++...|
T Consensus 234 Pra~~~~~~~~~v~y~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~~~~~~~~~~~i~~~~~l~s~~s~~~~~~~~~sR 313 (478)
T PF00324_consen 234 PRATLLSVLRIGVFYVLTSYALTLAVPYDNLGLTAASNSASPFVIAAQYSGGPWLAWIVNAGILISAFSSANASLYAASR 313 (478)
T ss_pred hhHhhhhhhhhhhhhhhhhhhcccccCccchhhccccccccchhhhhhhcccccccceecccchhhhhhhhhhhhcccce
Confidence 99999999999999988776554444433211 111223334567888889999999999999999999
Q ss_pred HHHHhhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhccc--HHHHHHHHHhHhhhhHHHhhhhhhHHh
Q psy17648 410 LLETNYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPH--FAILMGFIGSFTGTMLSFIWPCYFHLK 484 (530)
Q Consensus 410 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--~~~li~l~Ga~~~~~~~~i~P~l~~l~ 484 (530)
.+..+- |++..|.. .+.+++.|++.+++..++.++..++....+. +..+.+. +.....+.+++-++-+++
T Consensus 314 ~l~ama---~dg~lP~~~~~~~~k~~~P~~Ai~~~~~i~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~s~~~ 388 (478)
T PF00324_consen 314 LLYAMA---RDGLLPKKFFARHPKNGVPYVAILVSSIISLLVLLLGSFSPGIVFNWLLNI--STISNLIVYILINISYIR 388 (478)
T ss_pred eehhhh---hhhhhhhhhhhhhhcCCceEEEEeeehhchheeeeeccchhhHHHHHHhhh--hhhhhhhHHHhhhhhhhh
Confidence 996653 34445521 2345566777777666666555554433333 2223333 223456666777777776
Q ss_pred hcCC
Q psy17648 485 LKGG 488 (530)
Q Consensus 485 ~~~~ 488 (530)
.|++
T Consensus 389 ~r~~ 392 (478)
T PF00324_consen 389 FRKK 392 (478)
T ss_pred hhhh
Confidence 6543
No 52
>KOG1289|consensus
Probab=99.30 E-value=1.9e-09 Score=110.30 Aligned_cols=359 Identities=11% Similarity=0.116 Sum_probs=184.8
Q ss_pred CccCCCCccHHHHHHHHHhhhhc--ccc-chhHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccC
Q psy17648 116 GERSRHKINEWQAAWNVTNAIQG--MFI-VSLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVR 191 (530)
Q Consensus 116 ~~~~~~~~s~~~~~~~l~~~~iG--~Gi-L~lP~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 191 (530)
+++.+|+.+.++.+..-.+. +| .|+ -++.+++..+|-.+ +-.+++.+..+...+.-+.|-...+ |.+|+
T Consensus 43 kqef~R~fs~~s~fg~sFs~-~g~~~~i~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~-PtsGg----- 115 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSL-MGLLPGIATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAM-PTSGG----- 115 (550)
T ss_pred chhhhhhhhHHHHHHHHHHH-hcchhhhhhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhC-CCCCc-----
Confidence 45577888877655443332 22 133 24555565556443 2223333334334443334433333 44453
Q ss_pred CCHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHH---HhhhcccC--CCCcc--chhHHHHHHHHHHHhhhhcc-
Q psy17648 192 NSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVC---GDLMVGSF--PDGAI--DTRSWMMLIGIFLIPLGFLK- 263 (530)
Q Consensus 192 ~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~---~~~l~~~~--~~~~~--~~~~~~~i~~~~~~pl~~~~- 263 (530)
-|--.+. .-+|||+++..|++-+...++......... ++.+.... .+.++ .......+..++.+..++++
T Consensus 116 -Ly~waa~-lap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~np~y~~~~~~~~~v~~ai~~v~~lln~ 193 (550)
T KOG1289|consen 116 -LYFWAAV-LAPPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLTNPNYEPTNYHQFGVFEAILFVHGLLNS 193 (550)
T ss_pred -HHHHHHH-hcCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhcCCCCcccceEeehHHHHHHHHHHHHhc
Confidence 3433333 457778777666665555444333222221 22222211 12222 22222333334444444444
Q ss_pred -cchhhhHHHHHHHHHHHHHHHhheeeeeeec-CccCCc-------cccccccc----cchhHHHHHhhhhcccceeccc
Q psy17648 264 -SLHHVSMLSFWCTMSHIVINVVILGYCLLQI-GDWGWG-------KVKWTLDM----ENFPISLGVIVFSYTSQIFLPT 330 (530)
Q Consensus 264 -~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~-~~~~~~-------~~~~~~~~----~~~~~a~~~~~faf~~~~~i~~ 330 (530)
.-+.+++++-+++...++..++.++.....- .+.|+. +.+...++ ..+..+|-.-.+.+.|-.....
T Consensus 194 ~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~iF~~f~N~sgw~~~G~afil~f~~~~wt~sGyDa~~H 273 (550)
T KOG1289|consen 194 LPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSFIFGKFNNYSGWKNNGWAFILGFFNPAWTMSGYDAAAH 273 (550)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCceeeecccccCCCCcchHHHHHhhccceeEEeccCchHH
Confidence 3456777777776665555444333222111 111111 11111222 2356788889999999999999
Q ss_pred ccccccCccch-hhHHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhccCCCchH-----------HHHHHHHHHHHHHH
Q psy17648 331 LEGNLIDRSKF-DWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWF-----------RGFVNFFLVVKALL 398 (530)
Q Consensus 331 i~~em~~p~~~-~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~-----------~~i~~~~~~i~~~~ 398 (530)
+.+|.||++|. ||++..+..+..++=.++.+....+-+++......++.+.+.. ......+..+..+.
T Consensus 274 ~aEE~~nAsk~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k~~v~~~~l~ii~~f~ 353 (550)
T KOG1289|consen 274 MAEETKNASKAAPRGIISSIAIGFILGWIIIIGIAYTIPDDLDAVLNSSLGQPIVQIYYQALGKKGAVFLLSLIIIALFF 353 (550)
T ss_pred HHHHhcchhhhccHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHhcCCCCChHHHHHHHhcCCCceEehhHHHHHHHHH
Confidence 99999999985 9999888877776655555544445554322222223333211 12223333444444
Q ss_pred hccchhhhHHHHHHHhhccCCCCCCCcc--c---cCCcchhhHHHHHHHHHHHHHHHHHhh-cccHHHHHHHHHhHhhhh
Q psy17648 399 SYPLPYYAACELLETNYFKGGDSQFPSI--W---HLDGELKVWGLMFRVAVVLFTIMMAVF-IPHFAILMGFIGSFTGTM 472 (530)
Q Consensus 399 s~pl~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~ia~~-ip~~~~li~l~Ga~~~~~ 472 (530)
.--..+...+|..+.. .|++..|-. | +.+.+.|.-++....++.++..++.+. .-.|+.+++. +....+
T Consensus 354 ~gi~s~~a~SR~v~af---aRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~L~s~~Af~Alfs~--a~i~l~ 428 (550)
T KOG1289|consen 354 MGISSLTASSRLVYAF---ARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLILASATAFNALFSA--AAIALF 428 (550)
T ss_pred hhHHHHHHHHHHHhhh---hccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 4444555667777552 334555533 1 222345655555444444444333332 2257888887 677789
Q ss_pred HHHhhhhhhHHhhcCC
Q psy17648 473 LSFIWPCYFHLKLKGG 488 (530)
Q Consensus 473 ~~~i~P~l~~l~~~~~ 488 (530)
++|..|..+.+...|+
T Consensus 429 ~Ay~iP~~~rlf~~r~ 444 (550)
T KOG1289|consen 429 IAYAIPIFCRLFFGRD 444 (550)
T ss_pred HHHHHhHHhheeeccc
Confidence 9999999998877664
No 53
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.14 E-value=1.2e-08 Score=102.64 Aligned_cols=275 Identities=16% Similarity=0.238 Sum_probs=185.3
Q ss_pred CccHHHHHHHHHhhhhccccchhHHHHHh-c--cHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 122 KINEWQAAWNVTNAIQGMFIVSLPFAVLR-G--GYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 122 ~~s~~~~~~~l~~~~iG~GiL~lP~a~~~-~--G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
|.|.+|.++.+..+++|+|++.+|....+ + ||+++++..+.+.+..+....+.+. .+ ..+..++.
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~d~Wi~~ll~~~~~l~~~~l~~~l~~~---~p---------~~~l~~~~ 68 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAGDAWISVLLGGLIGLLLALLIYYLLKR---FP---------GKTLVEIS 68 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH---CC---------CCCHHHHH
Confidence 57889999999999999999999987544 3 6776555444544444444333322 12 33999999
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-CCCccchhHHHH-HHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSF-PDGAIDTRSWMM-LIGIFLIPLGFLKSLHHVSMLSFWCT 276 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~-~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~ 276 (530)
++.+|| |...++.+...++.+......+...++.++..+ |+ +..|.+ +..++..--...+.++..++.+.+..
T Consensus 69 ~~~~Gk-~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp~----TP~~~i~~~~ll~~~y~a~~G~e~i~R~~~~~~ 143 (320)
T PF03845_consen 69 EKLFGK-WLGKIINLLYILYFLLISALVLREFSEFIKTYLLPE----TPIWVIILLFLLVAAYAARKGIEVIARVAEILF 143 (320)
T ss_pred HHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----CCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999 777888888888888888888888888887754 33 333333 33334444455568888888766665
Q ss_pred HHHHHHHHhheeeeeeecCccCCccccc--cccccchhHHHHHhhhhcccceecccccccccCccchhhHHHHHHHHHHH
Q psy17648 277 MSHIVINVVILGYCLLQIGDWGWGKVKW--TLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAI 354 (530)
Q Consensus 277 ~~~~~~~~iii~~~~~~~~~~~~~~~~~--~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~~~i~~s~~~~~~ 354 (530)
...+...+++.... .++.++++..+ ..++.++..+.....+.|.+...+..+...+|+|+|..|....+..++.+
T Consensus 144 ~~~~i~~~~i~~~~---~~~~~~~~l~P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~k~~~~~~~~~~~ 220 (320)
T PF03845_consen 144 PIFLILLLLILLLS---IPNIDWDNLLPVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKDKKKLKKSLLIAILISGL 220 (320)
T ss_pred HHHHHHHHHHHHHh---cccCCHHHeeCcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHH
Confidence 55554444443333 23444444432 23455677888888999999988999999999999989999999999999
Q ss_pred HHHHHHhHhhhhccCCchhh-------hhccCCC-chHHHH---HHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 355 FKSMFGYLCFLTFQNDTQQV-------ITNNFDS-AWFRGF---VNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 355 ~Y~~~g~~gy~~fG~~~~~~-------il~~~~~-~~~~~i---~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
+|...-+.....||.+..++ .....+- +.+..+ .-..-....+....+..|.+.+.+.+.+.
T Consensus 221 ~~~~~~~~~i~vfG~~~~~~~~~P~~~~~~~i~i~~fieRld~~~i~~w~~~~~~~~~~~~~~~~~~~~~~f~ 293 (320)
T PF03845_consen 221 FLLFIIFITIGVFGPELAKKLTYPVLELARSIEIGDFIERLDSIFILIWIIGIFIKISLYLYAASEGLSQLFK 293 (320)
T ss_pred HHHHHHHHHHHhcCHHHHhceecHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99888888888888653221 1111111 112222 22233445566667888888888888663
No 54
>KOG3832|consensus
Probab=99.02 E-value=5.5e-09 Score=92.84 Aligned_cols=215 Identities=13% Similarity=0.163 Sum_probs=144.8
Q ss_pred ccHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcC------------------
Q psy17648 123 INEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPN------------------ 183 (530)
Q Consensus 123 ~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~------------------ 183 (530)
.|...+...+.|-++|+|-|++|.+|+.+||. ++.++.+.++.++.+..+.+++....+.+
T Consensus 12 ysq~vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~s 91 (319)
T KOG3832|consen 12 YSQTVGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDES 91 (319)
T ss_pred hhhhhhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhcccccc
Confidence 44566778889999999999999999999998 79999999999999988888776432210
Q ss_pred --------------------------CCCccc----cCCCHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17648 184 --------------------------TGQRVR----VRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDL 233 (530)
Q Consensus 184 --------------------------~g~~~~----~~~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~ 233 (530)
.|.+++ ......+++...|.| .+-.+..++++++++|-..+|....--.
T Consensus 92 tasd~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnk-vgln~fyf~iiiylfgdlaiyaaavpfs 170 (319)
T KOG3832|consen 92 TASDDDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNK-VGLNFFYFAIIIYLFGDLAIYAAAVPFS 170 (319)
T ss_pred ccCCCcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhhhhhhhhcCchH
Confidence 000000 122456778878888 7888999999999999999987655332
Q ss_pred hcccC-------------CC-------Cccc-------hhHHHHHHH-HHHHhhhhcccchhhhHHHHHHHHHHHHHHHh
Q psy17648 234 MVGSF-------------PD-------GAID-------TRSWMMLIG-IFLIPLGFLKSLHHVSMLSFWCTMSHIVINVV 285 (530)
Q Consensus 234 l~~~~-------------~~-------~~~~-------~~~~~~i~~-~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~i 285 (530)
.-++. .. |..+ .+.+..++. ++++|+.+. ++++.++++++.....+.....
T Consensus 171 ~m~itcaa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~ 249 (319)
T KOG3832|consen 171 AMNITCAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFIL 249 (319)
T ss_pred hhhhhhhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccc
Confidence 22211 00 1100 133333433 334466554 6888899999988888877654
Q ss_pred heeeeeeecCccCCccccccccccchhHHHHHhhhhcccceecccccccccCcc
Q psy17648 286 ILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRS 339 (530)
Q Consensus 286 ii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~ 339 (530)
.+..+-.+..+.+....+.....-+|..-++..+|+|.+|...|.....++.+.
T Consensus 250 g~~l~tmqaeedaa~a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k~ 303 (319)
T KOG3832|consen 250 GISLATMQAEEDAAAAHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTKD 303 (319)
T ss_pred hhhhhhhhhcccccccCCccccccccccccchhhHHHHhhccCCCCCCCCeecc
Confidence 444333333332222222233466777888999999999999999988887554
No 55
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.99 E-value=8.3e-07 Score=90.09 Aligned_cols=332 Identities=11% Similarity=0.087 Sum_probs=179.2
Q ss_pred HHHhhhhccccchhHHH-HHhcc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhhCchh
Q psy17648 131 NVTNAIQGMFIVSLPFA-VLRGG--YW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVW 206 (530)
Q Consensus 131 ~l~~~~iG~GiL~lP~a-~~~~G--~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~G~~~ 206 (530)
.+..-.+|+|.|-.|-. -+++| |+ +.+.+++.++..-..+ .+. -+++|+ +|.++.+ .+||++
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllg----l~a---v~~~gG------~~~~l~~-~~g~~f 68 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLG----LIA---LALVGG------GYDSLSA-RIGKVF 68 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHH----Hhe---eeecCC------CHHHHHH-HhChHH
Confidence 45566799999999966 44555 33 3555555555443333 332 123333 8999999 568866
Q ss_pred HHHHHHHHHHHH-HHH-----HHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhh---hhcccchhhhHHHHHHHH
Q psy17648 207 GARAVNLAQMIE-LLM-----TCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPL---GFLKSLHHVSMLSFWCTM 277 (530)
Q Consensus 207 g~~~~~i~~~i~-~~~-----~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl---~~~~~l~~l~~~s~~~~~ 277 (530)
+..+.+...... +.. ..++|-.. +.+++++.. ......+..++.+-+ ...|.-|-..+++-+.+-
T Consensus 69 ~~lf~~~~~l~iGP~~aiPRtaa~s~e~~----i~p~~~~~~--~~~~l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP 142 (378)
T TIGR00796 69 GILFTVILYLTIGPLFAIPRTATVSFEMG----IAPLLHSPT--SLLALFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTP 142 (378)
T ss_pred HHHHHHHHHHHHHhchhhhHHHHHHHHHH----HHhccCccc--chHHHHHHHHHHHHHHHHHHcCcccHHHHhHHHHHH
Confidence 655555444333 332 23334333 555665422 122222333333332 334556777777777777
Q ss_pred HHHHHHHhheeeeeeecCccCCccccccccc-cchhHHHHHhhhhcc-------cceecccccc-cccCccch-hhHHHH
Q psy17648 278 SHIVINVVILGYCLLQIGDWGWGKVKWTLDM-ENFPISLGVIVFSYT-------SQIFLPTLEG-NLIDRSKF-DWMLDW 347 (530)
Q Consensus 278 ~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~~~faf~-------~~~~i~~i~~-em~~p~~~-~~~i~~ 347 (530)
..++.++++++.++.. |..+.++......- ..+..++-..-+.|+ |+..+..+.+ |+|||++. ++.+..
T Consensus 143 ~lLi~l~~lii~g~~~-p~g~~~~~~~~~~~~~~f~~g~l~GY~TmD~laal~fg~iiv~~i~~~g~~~~~~~~~~~i~~ 221 (378)
T TIGR00796 143 ALLVTLLALIIKALLW-PAGPILAASGAYASQQAFSKGFLEGYLTMDALAALVFGIIVVNAIRSRGVTKPKKITKYTIKA 221 (378)
T ss_pred HHHHHHHHHHHHHHHc-CCCCcCCcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7777777666666654 22222111111111 336677777778888 8888999988 99999884 666666
Q ss_pred HH-HHHHH--HHHHHHhHhhhh---ccCC-chhhhhccCC----CchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 348 SH-IAAAI--FKSMFGYLCFLT---FQND-TQQVITNNFD----SAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 348 s~-~~~~~--~Y~~~g~~gy~~---fG~~-~~~~il~~~~----~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
+. ..+.. +|.-.+..|... +.+. ..+.++.+.. .+.-..+..+.+.++++++.......+.+.+.+...
T Consensus 222 G~ia~i~l~~vY~~L~~lGa~~~~~~~~~~~~~~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~ 301 (378)
T TIGR00796 222 GLIAAVLLAFIYLSLFYLGATSAAAAGDAVNGAQILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP 301 (378)
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHhhhcccCCcHHHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 55 33344 444444444322 2111 1223333221 223356777888999999998888888888866542
Q ss_pred cCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHH------hhcCCCC
Q psy17648 417 KGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHL------KLKGGSL 490 (530)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l------~~~~~~~ 490 (530)
| .| . ........+.+++++.. .++.++++.. ..+.++.|..+.+ +.+.++.
T Consensus 302 --k---~~----------y--~~~v~~~~l~s~~ia~~--Gl~~Ii~~~~----PvL~~~YP~~i~lill~ll~~~~~~~ 358 (378)
T TIGR00796 302 --K---LS----------Y--KTWVIVFTLFSFIVANL--GLTQIISISI----PVLMIIYPLAIVLILLSFLRKLWDSK 358 (378)
T ss_pred --C---CC----------H--HHHHHHHHHHHHHHHHh--CHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 1 11 1 12233444455555543 7888888744 3444445544333 2222333
Q ss_pred chhhhhhhhhhHHHHH
Q psy17648 491 SIQSVAFDCFVIFLGC 506 (530)
Q Consensus 491 ~~~~~~~~~~~i~~g~ 506 (530)
++..|+..++..++++
T Consensus 359 ~~~y~~~~~~~~~~~~ 374 (378)
T TIGR00796 359 RAVYQITLIVALLFSI 374 (378)
T ss_pred CCeeehHHHHHHHHHH
Confidence 4444544444444443
No 56
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.71 E-value=7.6e-06 Score=79.13 Aligned_cols=134 Identities=16% Similarity=0.216 Sum_probs=93.0
Q ss_pred HHHHHHHhhhhccccchhHHH----HHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhh
Q psy17648 127 QAAWNVTNAIQGMFIVSLPFA----VLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECF 202 (530)
Q Consensus 127 ~~~~~l~~~~iG~GiL~lP~a----~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~ 202 (530)
.-.+..+++++|+|. +...= |..-|+.++...++.+++-..++..+.+-.++.+ ..+|.|..++.+
T Consensus 7 ~~~f~~ig~~vGAGf-AsGqEi~QFF~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~---------a~~y~~~~~~v~ 76 (349)
T COG3949 7 RWAFAFIGTVVGAGF-ASGQEIMQFFGKYGVYSILGIILSTVLFTLSGAVIMTIGKKFN---------ATSYREILKYVS 76 (349)
T ss_pred HHHHHHHHHhhcccc-cchHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---------ccchHHHHHHHh
Confidence 345667779999995 44432 3345777777788888888888877777665544 449999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHH
Q psy17648 203 GPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFW 274 (530)
Q Consensus 203 G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 274 (530)
||+ ...+.++.+.+.+++.+++-+-..+..+++.+. .|...=.++...++..+.+.++.+.+..+..+
T Consensus 77 ~~~-~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~---lP~wiGali~i~~v~i~lfl~~vegi~tvn~i 144 (349)
T COG3949 77 GPK-FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFG---LPYWIGALIIILLVLILLFLGRVEGIITVNGI 144 (349)
T ss_pred hHH-HHHHHHHHHHHHHHHHHHHHhccchhHHHHHhC---ccHHHHHHHHHHHHHHHHHHhcccceeeehee
Confidence 995 567899999999999999999888888887763 22222224444444445555556666444433
No 57
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.66 E-value=8.3e-05 Score=76.26 Aligned_cols=269 Identities=14% Similarity=0.100 Sum_probs=155.0
Q ss_pred cCcCCCCccccCCCHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhh
Q psy17648 180 IDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPL 259 (530)
Q Consensus 180 ~~~~~g~~~~~~~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl 259 (530)
.++++|-| =-.++|..||. +|.++..+.+.+.+.|-...-.+..++..... ...+...+.++.++++...
T Consensus 75 ~Ga~~Glp------qmi~sR~~fG~-~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~---~~~~~~~~ili~g~l~~l~ 144 (442)
T COG1457 75 QGARTGLP------QMILSRYPFGV-KGSILPSLLNGITLIGWFGVNVILSGIAIGSG---TGLPVWAGILIIGVLMTLV 144 (442)
T ss_pred hccccCCC------hheeecccccc-hhHHHHHHHHHHHHhhHHHHHHHHhccccccC---CCCcHHHHHHHHHHHHHHH
Confidence 45566643 23366778999 69999999999999999999999998873322 2445667777777666666
Q ss_pred hhc--ccchhhhHHHHHHHHHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcccc-eeccccccccc
Q psy17648 260 GFL--KSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQ-IFLPTLEGNLI 336 (530)
Q Consensus 260 ~~~--~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~-~~i~~i~~em~ 336 (530)
+.. |-++.+.+.+...........+..+ +......+......+.++.++..++....=.+..+ .......+.+|
T Consensus 145 ~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~---~~~~~~~~~~~~~~~~~~~~fl~a~slv~g~~~sw~~~~aDysRy~~ 221 (442)
T COG1457 145 TIFGYRALHKLERIAVPLLLLLFLYLLALL---FRSKGGLDALWVKGPTSPLSFLSALSLVIGSFASWGPYAADYSRYAP 221 (442)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHH---HhcccccceeeccCCCcchhHHHHHHHHHHHHHhhhhhhhhhhhhcC
Confidence 654 3455555444443333222222221 11111111111122345556665555544444443 55677777888
Q ss_pred Ccc--chhhHHHHHHHHHHHHHHHHHhHhhhhccCCc-hhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q psy17648 337 DRS--KFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDT-QQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLET 413 (530)
Q Consensus 337 ~p~--~~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~-~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~ 413 (530)
+|+ |.-.....+......+-.++|.+.-.+-|+.. .......+.. +...+-+.+.++.+.+--..+|+..-.+.+
T Consensus 222 ~~t~~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~~~~~~~~~~G~--~g~~~~lil~l~~~ttN~~nlYsa~ls~~~ 299 (442)
T COG1457 222 SPTPSKAFLAAVLGFFLGTSFMMILGAALAAAAGNADSIADVMLGLGG--FGLPAILILVLGTVTTNANNLYSAGLSFAN 299 (442)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHhccc--HHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 777 44445555666667777788888887777765 3333333322 666666777778888877888887776665
Q ss_pred hhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHhHhhhhHHHhhhh
Q psy17648 414 NYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFI----PHFAILMGFIGSFTGTMLSFIWPC 479 (530)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~i----p~~~~li~l~Ga~~~~~~~~i~P~ 479 (530)
...+-+ ++++.+...+. +..++|+.. .+++..+.++|.....+....+-=
T Consensus 300 i~~~l~--------------k~~~~v~~~v~--igt~la~~~~~f~~~f~~Fl~~i~~~i~P~~~I~iad 353 (442)
T COG1457 300 IIPKLS--------------KVTRVVIAGVG--IGTLLALAGPFFYNFFENFLLLLGYFIPPWGGVMIAD 353 (442)
T ss_pred hhhhhh--------------hHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 543211 11222222221 334444433 467777777776664444433333
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.65 E-value=7.4e-05 Score=79.56 Aligned_cols=152 Identities=9% Similarity=0.058 Sum_probs=92.0
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHH---HHHHHHHHH-HHHHHHHHHhhhhcCcCCCCccccCCCH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIF---AMIGIAYIC-CYTGKILVECLYEIDPNTGQRVRVRNSY 194 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii---~~i~~~~~~-~~~~~ll~~~~~~~~~~~g~~~~~~~~y 194 (530)
.|+.+++...+.+..+.+|++. ++.|....+.|+.... .....+.++ .+.+..+.+-.++. + ..|.
T Consensus 40 gr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~----~-----~~T~ 110 (483)
T PRK09442 40 NRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKY----N-----AVTL 110 (483)
T ss_pred CCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----C-----CccH
Confidence 5778899999999999888866 6788665555653111 111111111 11111121212221 1 5599
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHH
Q psy17648 195 VSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFW 274 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 274 (530)
.|+.++-||++..+.+..+...+..+......+...+..++.+++ ++....+++..++++..+....++...+...+
T Consensus 111 ~e~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g---i~~~~~iii~~~iv~iYt~~GGl~av~~TD~i 187 (483)
T PRK09442 111 NDMLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG---ISYETGLLIFGITVALYTAFGGFRAVVLTDAL 187 (483)
T ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999765666666666666666666667777777777663 44555555666666677777777777777666
Q ss_pred HHHHHHHHH
Q psy17648 275 CTMSHIVIN 283 (530)
Q Consensus 275 ~~~~~~~~~ 283 (530)
-.+..+...
T Consensus 188 Q~~i~~~~~ 196 (483)
T PRK09442 188 QGIVMLVGT 196 (483)
T ss_pred HHHHHHHHH
Confidence 554444443
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.63 E-value=7e-05 Score=79.52 Aligned_cols=154 Identities=6% Similarity=0.046 Sum_probs=97.3
Q ss_pred CCCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHH-HHHHH--HHHHHHH-HHHHHHHHHhhhhcCcCCCCccccCCC
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYW-AIFAM--IGIAYIC-CYTGKILVECLYEIDPNTGQRVRVRNS 193 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~-gii~~--i~~~~~~-~~~~~ll~~~~~~~~~~~g~~~~~~~~ 193 (530)
-.|+.+++...+.+..+.+|++. ++.|-...+.|+. ..... ...+.++ .+.+....+..++.+ ..|
T Consensus 38 agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~T 108 (471)
T TIGR02119 38 GGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN---------AIT 108 (471)
T ss_pred eCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------Ccc
Confidence 35778999999999999999977 6788766666752 11110 0111111 111111222222222 459
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHH
Q psy17648 194 YVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSF 273 (530)
Q Consensus 194 y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 273 (530)
..|+.++-||++..+.+..+...+.+++..++.+...+..++.+++ ++....+++.+++++..+....++...++..
T Consensus 109 ~~e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g---i~~~~~iii~~~iv~iYt~~GG~~av~~td~ 185 (471)
T TIGR02119 109 INDVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG---LSYLTALFIFSSSVLIYTTFGGFRAVALTDA 185 (471)
T ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999999999755677778777777777777777777777777763 4555555666666677777777888777776
Q ss_pred HHHHHHHHHHH
Q psy17648 274 WCTMSHIVINV 284 (530)
Q Consensus 274 ~~~~~~~~~~~ 284 (530)
+-.+..++..+
T Consensus 186 iQ~~v~~~~~~ 196 (471)
T TIGR02119 186 IQGIVMFTGTT 196 (471)
T ss_pred HHHHHHHHHHH
Confidence 66544444333
No 60
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.58 E-value=1.9e-05 Score=82.29 Aligned_cols=330 Identities=12% Similarity=0.113 Sum_probs=154.8
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
.|+.+++...+.+..+.+|++. ++.|-...+.|+......+..+........++...+++.+ ..|..|+.
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---------~~T~~e~~ 75 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSG---------AVTIPEYL 75 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT-----------SHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccc---------hhhhhhhh
Confidence 4678899999999999999865 6788777777764222222222222233334445444322 45999999
Q ss_pred HHhhCchh-HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHH
Q psy17648 199 SECFGPVW-GARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTM 277 (530)
Q Consensus 199 ~~~~G~~~-g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 277 (530)
++-||++. .+.+..+..++..+......+...+..++.+++ ++....+++..++++..+..-.++...+...+-.+
T Consensus 76 ~~Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g---i~~~~~~~i~~~i~~iYt~~GGl~av~~td~iQ~~ 152 (406)
T PF00474_consen 76 EKRYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG---IPYNTAILIVGVIVIIYTFFGGLRAVAWTDFIQGV 152 (406)
T ss_dssp HHHT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT-----HHHHHHHHHHHHHHTTCTT------SHHHHHHH
T ss_pred hhhcCCchhhhhhcccccchhhhhhhhccccccccchhhccc---hhhhHHHHHHHHHHHHhhhhhhHhhhhHHHHHHHH
Confidence 99999963 256666666666667777778888888887774 45566666666666667777667766666555444
Q ss_pred HHHHHHHhheeeeeeecCcc----------CCcccc-c-cccc---cchhHH--H-HHhhhhcccceecccccccccCcc
Q psy17648 278 SHIVINVVILGYCLLQIGDW----------GWGKVK-W-TLDM---ENFPIS--L-GVIVFSYTSQIFLPTLEGNLIDRS 339 (530)
Q Consensus 278 ~~~~~~~iii~~~~~~~~~~----------~~~~~~-~-~~~~---~~~~~a--~-~~~~faf~~~~~i~~i~~em~~p~ 339 (530)
..++..+++....+...+.. +.+..+ . +.+. .+.... + ....+...+.+....=.-..|+++
T Consensus 153 i~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~p~~~qR~~aak~~~ 232 (406)
T PF00474_consen 153 IMIIGAIVVLIFVLSAVGGFGGLFQNLSAAHPNFLDLFNPGGFSMFSSPLFFLSFWIALMLGTFGAPHFWQRFLAAKSPK 232 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-GGGG-SS--SS-----SSGGGGS-TTHHHHSTHHH-HHHHHHHSSSHHH
T ss_pred HHHHHHHHhhhccchhcCCchhhHHHHhhcCcccccccCCCCcccccchhhhHHHHHHHHhhhccchHHHHHHHhcCCHH
Confidence 44333333322222221110 000000 0 0110 011111 1 112222223322222222345666
Q ss_pred chhhHHHHHHHHHHHHHHH---HHhHhh---hhccC------Cchh----hhhccCCCchHHHHHHHHHHHHHHHhccch
Q psy17648 340 KFDWMLDWSHIAAAIFKSM---FGYLCF---LTFQN------DTQQ----VITNNFDSAWFRGFVNFFLVVKALLSYPLP 403 (530)
Q Consensus 340 ~~~~~i~~s~~~~~~~Y~~---~g~~gy---~~fG~------~~~~----~il~~~~~~~~~~i~~~~~~i~~~~s~pl~ 403 (530)
+.+|....+.....+++.. +|+.+- ...++ ...+ ....++-++++..+.-..+.-+.+++..-.
T Consensus 233 ~ar~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~gl~~~~~~aA~~ST~~s~ 312 (406)
T PF00474_consen 233 TARKGMLIAIIFLIIFYFLTIFIGLIAIALFGLYPDAAGPSLGDPDLAFPYLAAQYLPPGLAGLFLAGILAAIMSTADSL 312 (406)
T ss_dssp HHHHHHHHHHGGGTTHHHHHHHHHHHH-HHHHHH-TT--S-SSSGGGHHHHHHT-TS-TTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHhhhheeeehHHhhhhhhhhcccccccccccccccCCcccchhhhhhhccchhHHHHHHHHHHhhhHHHHHH
Confidence 6666655554433333333 222221 11111 1111 233344334666666666666677777777
Q ss_pred hhhHHHHHHHhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccH--HHHHHH
Q psy17648 404 YYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHF--AILMGF 464 (530)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~--~~li~l 464 (530)
+......+-+-+.+.-.++ ....+++..+...+...++.+++.+++...|+. ..+..+
T Consensus 313 l~a~ss~~~~Di~~~~~~~---~~~s~~~~~~~~ri~~~v~~~i~~~la~~~~~~~i~~~~~~ 372 (406)
T PF00474_consen 313 LLAISSIFSRDIYKPFIKP---NSASEKQLLRVSRIAIVVIGIIAILLALFFPDSGIIDLILF 372 (406)
T ss_dssp HHHHHHHHHHHCCCCCC-S---S-S-SSHHHHHHHHHHHHHHHHHHHHGGGGGGSSHHHHHHH
T ss_pred HhhhhhhhhHHhhhccccc---cccchhhhhhccceeEEeeHHhHHHHHhccccchHHHHHHH
Confidence 7777777654443322111 101122222222334445556677777777764 444444
No 61
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.54 E-value=8.5e-05 Score=77.36 Aligned_cols=150 Identities=14% Similarity=0.113 Sum_probs=97.2
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
.|+.+++...+.+..+.+|++. ++.|....+.|+.+....+..........++.....++.+ ..|..|+.
T Consensus 2 gr~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~T~~e~l 72 (407)
T TIGR00813 2 GRSLGGWVVAASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---------AYTMPEYL 72 (407)
T ss_pred CCCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CCchhHHH
Confidence 3678899999999999999876 6788776666753221111112222233334444333221 45999999
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMS 278 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 278 (530)
++-||++..+.+..+...+..+......+...+..++.+++ ++...-.++.+++++..+..-.++...+...+-.+.
T Consensus 73 ~~Ryg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g---i~~~~~~ii~~~i~~~Yt~~GG~~av~~Td~iQ~~i 149 (407)
T TIGR00813 73 EKRFGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG---LDLYLSLLLLGAITILYTVFGGLKAVVWTDTIQAVI 149 (407)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---chHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHH
Confidence 99999865777777777777777788888888888887763 444444555555666666667777777766665544
Q ss_pred HHH
Q psy17648 279 HIV 281 (530)
Q Consensus 279 ~~~ 281 (530)
++.
T Consensus 150 ~~~ 152 (407)
T TIGR00813 150 MIL 152 (407)
T ss_pred HHH
Confidence 443
No 62
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.54 E-value=3e-05 Score=81.59 Aligned_cols=222 Identities=12% Similarity=0.087 Sum_probs=114.3
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc----CCCCc-cc------hhHHHHHHHHHHHhhhh
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGS----FPDGA-ID------TRSWMMLIGIFLIPLGF 261 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~----~~~~~-~~------~~~~~~i~~~~~~pl~~ 261 (530)
++.-+.|..||. +|..+..++..+..++-...-....++.+..+ +++.. .+ .....+++.++.+++..
T Consensus 77 ~~~v~sR~~FG~-~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~ 155 (442)
T TIGR00800 77 PFPVLSRASFGI-YGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLF 155 (442)
T ss_pred Ccchhhhhhhhh-hHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 788899999999 58889999888888888888888887655443 33211 11 11223344455555445
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhheeeeeeecCccC---Ccc-ccccccccchhHHHHHhhhhc-ccceeccccccccc
Q psy17648 262 LKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWG---WGK-VKWTLDMENFPISLGVIVFSY-TSQIFLPTLEGNLI 336 (530)
Q Consensus 262 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~~---~~~-~~~~~~~~~~~~a~~~~~faf-~~~~~i~~i~~em~ 336 (530)
....+...+....+....++..++.++......+... ... .........+..++...+=.+ ....+.+...+.+|
T Consensus 156 ~~g~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~g~~~s~~~~~~DysRy~~ 235 (442)
T TIGR00800 156 FFGYKIRHLFEWLAVVPPFAAFGMLIWALSKAHGKGPLGELTGTLHGSTGAWAFLYALSLVIGSFATWATNAPDFTRFGK 235 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccccCCCCCCcchhHHHHHHHHHHHHHHHHHHHcCchhhhhhcC
Confidence 5444444444444443322222222111111110000 000 011112233444444433232 33468889999999
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHhHhhhh----ccCCchh--hhhccCCCchHHHHHH------HHHHHHHHH-hccch
Q psy17648 337 DRSKFDWMLDWSHIAAAIFKSMFGYLCFLT----FQNDTQQ--VITNNFDSAWFRGFVN------FFLVVKALL-SYPLP 403 (530)
Q Consensus 337 ~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~----fG~~~~~--~il~~~~~~~~~~i~~------~~~~i~~~~-s~pl~ 403 (530)
++++..+....++....+...++|+.+-.. +|+...+ .+...+.......... ++..+..+. ..-..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~f~~~~~vl~~~~t~~~~N 315 (442)
T TIGR00800 236 SKKTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEPYWSPLDILARFLGLTYAVGARAVFGFGFCFVVAQLSTNISAN 315 (442)
T ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHhcccchhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 988766666777777777777777666554 7655332 2333333322221211 333333333 44445
Q ss_pred hhhHHHHHHHhh
Q psy17648 404 YYAACELLETNY 415 (530)
Q Consensus 404 ~~~~~~~~~~~~ 415 (530)
.|+..-.+.+.+
T Consensus 316 ~ys~~l~l~~l~ 327 (442)
T TIGR00800 316 SYSAGLDIAALL 327 (442)
T ss_pred ccchHHHHHHhC
Confidence 566655555544
No 63
>PRK12488 acetate permease; Provisional
Probab=98.52 E-value=0.00023 Score=76.84 Aligned_cols=151 Identities=9% Similarity=0.071 Sum_probs=96.8
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHH-HHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCY-TGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~-~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
.|+.+++...+.+..+.++++. ++.|-.....|+-+... .+...+... ...++.+-.++.+ ..|..|.
T Consensus 66 GR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~~~~-~~g~~~g~~~~~~~~a~~lr~~g---------~~T~~d~ 135 (549)
T PRK12488 66 GGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDGLLY-ALGVLAGWPIILFLIAERLRNLG---------KYTFADV 135 (549)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHH-HHHHHHHHHHHHHHHHHHHHHCC---------CcchHHH
Confidence 5788999999999999999876 67887766777643211 111111111 1223333333322 3588888
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTM 277 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 277 (530)
.++=||.+..|.+..+...+..+.....-+...+..++.+++ ++...-+++.++++..-+..-.++...+...+-.+
T Consensus 136 l~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g---i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T PRK12488 136 VSYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG---ISYLYAVVIVGALMVLYVTFGGMLATTWVQIIKAV 212 (549)
T ss_pred HHHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHH
Confidence 888888545788888777777666677777777777777753 44544555666666666777778887777777654
Q ss_pred HHHHHH
Q psy17648 278 SHIVIN 283 (530)
Q Consensus 278 ~~~~~~ 283 (530)
.++...
T Consensus 213 im~~~~ 218 (549)
T PRK12488 213 LLLSGT 218 (549)
T ss_pred HHHHHH
Confidence 444443
No 64
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.38 E-value=0.0006 Score=70.29 Aligned_cols=215 Identities=9% Similarity=0.048 Sum_probs=121.3
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC--ccchhHHHHHHHHHHHhhhhcccchhhhH
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG--AIDTRSWMMLIGIFLIPLGFLKSLHHVSM 270 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~--~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 270 (530)
++.-+.|..||. +|..+..+...+...+-...-....++.++.+.... ..+...+.++..++..+.+. ...+.+++
T Consensus 59 ~~~v~sR~~FG~-~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~~~~~~~~~i~~~l~~~~~~-~G~~~i~~ 136 (386)
T TIGR02358 59 SAMGSLKLSLGS-KGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGEESPMLWILIVGILVTLWLL-SGPLAFVW 136 (386)
T ss_pred CHHHHHHHHHcc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 889999999999 588888888888888877777777787777665321 11223344444444444444 34566666
Q ss_pred HHHHHHHHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhh-cccceecccccccccCccchhhHHHHHH
Q psy17648 271 LSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFS-YTSQIFLPTLEGNLIDRSKFDWMLDWSH 349 (530)
Q Consensus 271 ~s~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~fa-f~~~~~i~~i~~em~~p~~~~~~i~~s~ 349 (530)
+..+.........+...+......+ .+. ....+.+ ..+..++....-. -......+...+..|+|++.-+....+.
T Consensus 137 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~-~~~~~~~-~s~~~~~~~~~~~~~swa~~~~DysRy~k~~~~~~~~~~~G~ 213 (386)
T TIGR02358 137 LNNWSVWLLLIATLWLLVVVFSKAD-LSE-LWNRAGD-MSFAVAVELVIAMPLSWLPLIADYTRFARNPRHVFLGTVLGY 213 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc-hhh-hcCCCCC-ccHHHHHHHHHHHHHHHHHHccchhhhcCCCcceehHHHHHH
Confidence 6666655554444332222221111 110 0001111 2233333222211 1223447888888888877666777788
Q ss_pred HHHHHHHHHHHhHhhhhccCCchhhhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhh
Q psy17648 350 IAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNY 415 (530)
Q Consensus 350 ~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~ 415 (530)
.+...+-.++|...-.+.++.....+.... ......-+++.++...+-....|+..-.+.+.+
T Consensus 214 ~i~~~~~~~~G~~~~~a~~~~d~~~~~~~~---g~~~~~~~~~~l~~~~~n~~N~ys~~l~l~~l~ 276 (386)
T TIGR02358 214 FIGSCWMYFLGLAVTLATGQTDIISILAGA---GLGIPALLIILLSTVTTTFMDIYSAAISTGNLL 276 (386)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHhc---cHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888776666654222233222 222233345556666666667777776666655
No 65
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.33 E-value=0.0019 Score=69.81 Aligned_cols=149 Identities=13% Similarity=0.152 Sum_probs=90.9
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICC-YTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
.|+.+++...+.+..+.+++.. ++.|-.....|+-+....+ ...+.. ....++.+-.++. | ..|..|.
T Consensus 66 Gr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~----g-----~~T~~d~ 135 (549)
T TIGR02711 66 GGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNL----G-----RYTFADV 135 (549)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHc----C-----CccHHHH
Confidence 5778888888888888888754 7888766667764322111 111111 1223334433332 2 3589998
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTM 277 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 277 (530)
.++=||.+..+.+..+...+..+......+...+..++.+++ ++...-+++..+++..-+..-.++...+...+-.+
T Consensus 136 l~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g---i~~~~~iii~~~i~~~Yt~~GGm~av~~td~iQ~~ 212 (549)
T TIGR02711 136 ASYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG---LNYHVAVVLVGILMVMYVLFGGMLATTWVQIIKAV 212 (549)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 888887545677777666666555566666777777777663 34444455555666666666677777777766554
Q ss_pred HHHH
Q psy17648 278 SHIV 281 (530)
Q Consensus 278 ~~~~ 281 (530)
.++.
T Consensus 213 im~~ 216 (549)
T TIGR02711 213 LLLF 216 (549)
T ss_pred HHHH
Confidence 4433
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=98.32 E-value=0.00087 Score=69.57 Aligned_cols=173 Identities=12% Similarity=0.051 Sum_probs=92.5
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHH
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLS 272 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 272 (530)
++.-+.|..||. +|..+..+...+..++-...-....+..+...++ .+...+.++..++..+.+... .+.+.+++
T Consensus 72 ~~~v~sR~~FG~-~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~---~~~~~~~~i~~~l~~~~~~~G-~~~i~~~~ 146 (404)
T PRK11017 72 STHLLARFSFGE-KGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG---LDINLLIVLSGLLMTVTAYFG-ISALTILS 146 (404)
T ss_pred CHHHHHHHHhch-hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 899999999999 5888887777777666555555556665555543 223335555555555555543 34444444
Q ss_pred HHHHHHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcc-cceecccccccccCccchhhHHHHHHHH
Q psy17648 273 FWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYT-SQIFLPTLEGNLIDRSKFDWMLDWSHIA 351 (530)
Q Consensus 273 ~~~~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~-~~~~i~~i~~em~~p~~~~~~i~~s~~~ 351 (530)
.+.........+..++....+....+.-....+.+...+..++...+=.+. ...+.+...+..|++++--.....++.+
T Consensus 147 ~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~g~~~~~~~~~~DysRy~k~~~~~~~~~~lg~~i 226 (404)
T PRK11017 147 RIAVPAIALLGGYSVWLAVNDVGGLDGLKAIVPAEPLDFSAALTLVVGSFISGGTLTADFVRFGRSAKIAVLATMVAFFL 226 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCchhhhhcCCCCCcccHHHHHHHHHHHHHHhHhcCCChHhhccCccceeehhHHHHHH
Confidence 444433333322222222211111110000011122345555554333333 3567888888888776644455556666
Q ss_pred HHHHHHHHHhHhhhhccCC
Q psy17648 352 AAIFKSMFGYLCFLTFQND 370 (530)
Q Consensus 352 ~~~~Y~~~g~~gy~~fG~~ 370 (530)
..++-.++|...-...|+.
T Consensus 227 ~~~~~~~~G~~~a~~~~~~ 245 (404)
T PRK11017 227 GNSLMFIFGAAGAAVYGQA 245 (404)
T ss_pred HHHHHHHHHHHHHHHcCCc
Confidence 6666666666655556653
No 67
>KOG2082|consensus
Probab=98.30 E-value=0.00014 Score=76.90 Aligned_cols=176 Identities=15% Similarity=0.162 Sum_probs=91.3
Q ss_pred ccccccCccc-hhhHHHHHHHHHHHHHHHHHh-Hhhh--------hccCCchhhhh---ccCCCchHHHHHHH----HHH
Q psy17648 331 LEGNLIDRSK-FDWMLDWSHIAAAIFKSMFGY-LCFL--------TFQNDTQQVIT---NNFDSAWFRGFVNF----FLV 393 (530)
Q Consensus 331 i~~em~~p~~-~~~~i~~s~~~~~~~Y~~~g~-~gy~--------~fG~~~~~~il---~~~~~~~~~~i~~~----~~~ 393 (530)
-..++|||+| .|--...+......+|+.-.+ +|-. .||+.+.++.. ..+|.+|...+..+ ...
T Consensus 432 rSGDLkDaQkSIPvGTI~AilTTS~vYlssv~lFGa~i~~~vLRDKfG~sv~g~lVva~laWPsPwVi~IGsFlST~GAg 511 (1075)
T KOG2082|consen 432 RSGDLKDAQKSIPVGTIAAILTTSFVYLSSVVLFGACIEGVVLRDKFGQSVGGNLVVATLAWPSPWVIVIGSFLSTCGAG 511 (1075)
T ss_pred CCccccchhhcCchhhhHHHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhccCcEEEEEecCCCceeeehhHHHHHhHHH
Confidence 3456788888 576666666666677744322 2221 57777776543 45677764433332 334
Q ss_pred HHHHHhccchhhhHH-HHHH---HhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHh
Q psy17648 394 VKALLSYPLPYYAAC-ELLE---TNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFT 469 (530)
Q Consensus 394 i~~~~s~pl~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~ 469 (530)
++.+++.|=.+.... +-+. +.|.+. ..+..|.|++++++++.-+..+++ +++.+--++.-++
T Consensus 512 LQsLtgAPRLLQAIAkD~IiPfL~~F~~~----------~~ngEPt~aLlLT~~Ice~gILig----slD~iApilsmFF 577 (1075)
T KOG2082|consen 512 LQSLTGAPRLLQAIAKDDIIPFLAPFGHG----------KANGEPTWALLLTAIICECGILIG----SLDLIAPILSMFF 577 (1075)
T ss_pred HhhhcCcHHHHHHHhhcCccchhhhhccc----------cCCCCccHHHHHHHHHHHhhheee----chhHHHHHHHHHH
Confidence 444555443322211 1111 111111 112236667777777777666666 7777777766666
Q ss_pred hhhHHHh-hhhhhHHhhcCCCCchhhhhhhhhhHHHHHHHH-----HHHHHHHHHHH
Q psy17648 470 GTMLSFI-WPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFG-----IIGVYDSGSAM 520 (530)
Q Consensus 470 ~~~~~~i-~P~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~-----v~g~y~si~~i 520 (530)
-.+..|+ +-|.++-.++-++++.+.|+.+|.+-++|..++ +.+-|.++.++
T Consensus 578 LMCY~fVNLaCavqtLLrtPnWRPRfkyyHW~LSflG~sLC~~iMF~~SWyyAlvAm 634 (1075)
T KOG2082|consen 578 LMCYLFVNLACAVQTLLRTPNWRPRFKYYHWSLSFLGASLCLAIMFISSWYYALVAM 634 (1075)
T ss_pred HHHHHHHhHHHHHHHHhcCCCCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443 334444445555555445666666655554433 33445555444
No 68
>KOG1288|consensus
Probab=98.27 E-value=0.00018 Score=75.43 Aligned_cols=155 Identities=14% Similarity=0.013 Sum_probs=89.1
Q ss_pred cchhHHHHHhhhhcccceecccccccccCccc-hhhHHHHHHHHHHHHHHHHHhHhhhhccCCc-hh--hhhccCCCchH
Q psy17648 309 ENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDWSHIAAAIFKSMFGYLCFLTFQNDT-QQ--VITNNFDSAWF 384 (530)
Q Consensus 309 ~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~-~~--~il~~~~~~~~ 384 (530)
.+|...|+++.=+-.|...=..+..|+|+|+| .|+-...+....+++|+++.++--.+-.... +. .++....- +
T Consensus 294 ~~F~~~FgV~F~g~tGimAGAnMSgELk~PSkSIP~GTl~ava~Tf~~Yvl~~flm~~t~~r~~Lq~dy~v~~~isl--~ 371 (945)
T KOG1288|consen 294 EDFASTFGVFFPGTTGIMAGANMSGELKAPSKSIPKGTLSAVAFTFFVYVLVIFLMGCTVPRTLLQNDYDVMMHISL--H 371 (945)
T ss_pred eehhhhheeeeccchhhhcCCCcCccccCccccCCccchHHHHHHHHHHHHHHHHhccCcchHHhhhchhheeeccc--c
Confidence 34667777777777777777788899999999 6999999999999999887665332211111 11 11111111 1
Q ss_pred HHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCC--CCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHH
Q psy17648 385 RGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDS--QFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILM 462 (530)
Q Consensus 385 ~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li 462 (530)
...+-+...-..+++--..+..+.|+++.+-.++--+ ..+.+....+..|+.+++++-+++-++++.+ +++.+-
T Consensus 372 p~fi~iGi~sttlfss~s~liGasrvL~alakD~lfg~ll~fak~~s~~~nP~~av~vtw~lvqlvll~g----~~N~iA 447 (945)
T KOG1288|consen 372 PPFILIGILSTTLFSSMSGLIGASRVLEALAKDDLFGGLLFFAKGSSYDGNPYVAVGVTWLLVQLVLLWG----DINKIA 447 (945)
T ss_pred chHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcccchhhheeeeccccCCCceeeeeHHHHHHHHHHHHh----hHHHHH
Confidence 1122222223334444455677888887754221100 1122222223446666777777776666665 777777
Q ss_pred HHHHhHh
Q psy17648 463 GFIGSFT 469 (530)
Q Consensus 463 ~l~Ga~~ 469 (530)
.++.-++
T Consensus 448 ~~it~~F 454 (945)
T KOG1288|consen 448 SMITMTF 454 (945)
T ss_pred HHHHHHH
Confidence 7765555
No 69
>PRK09395 actP acetate permease; Provisional
Probab=98.23 E-value=0.0046 Score=66.91 Aligned_cols=149 Identities=12% Similarity=0.149 Sum_probs=91.1
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICC-YTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
.|+.+++...+.+..+.+|++. ++.|-.....|+.+....+ ...++. ....++.+-.++. | ..|+.|+
T Consensus 68 gr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~-~~~~g~~~~~~~~~~~~r~~----g-----~~T~~d~ 137 (551)
T PRK09395 68 GGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDGLIYSI-GFLVGWPIILFLIAERLRNL----G-----KYTFADV 137 (551)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHH-HHHHHHHHHHHHHHHHHhhC----C-----CccHHHH
Confidence 5678889888999999998876 6788776677864321111 111111 1122233323222 2 4599999
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTM 277 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 277 (530)
.++=||++..+.+..+...+..+.....-+...+..++.+++ ++...-+++.++++..-+..-.++...+...+-.+
T Consensus 138 l~~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g---i~~~~~ili~~~i~~iYt~~GGm~av~~TD~iQ~i 214 (551)
T PRK09395 138 ASYRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG---LNYHVAVVLVGVLMMVYVLFGGMLATTWVQIIKAV 214 (551)
T ss_pred HHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHH
Confidence 998888545677777666665555555556666666666653 45555556666666666777777777777766544
Q ss_pred HHHH
Q psy17648 278 SHIV 281 (530)
Q Consensus 278 ~~~~ 281 (530)
.++.
T Consensus 215 im~~ 218 (551)
T PRK09395 215 LLLS 218 (551)
T ss_pred HHHH
Confidence 4433
No 70
>PRK11375 allantoin permease; Provisional
Probab=98.21 E-value=0.003 Score=67.04 Aligned_cols=220 Identities=11% Similarity=0.086 Sum_probs=104.8
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHH-HHHHHHHHHHHHHHHhhhc----ccCCC----------CccchhHHH--HHHHHH
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQM-IELLMTCILYVVVCGDLMV----GSFPD----------GAIDTRSWM--MLIGIF 255 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~-i~~~~~~~~y~i~~~~~l~----~~~~~----------~~~~~~~~~--~i~~~~ 255 (530)
++.-+.|..||.+ |..+..+... +..++-...-....++.+. .++|+ .+.+...++ +++.++
T Consensus 90 ~~~v~sR~sFG~~-Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 90 PFAMILRASYGVR-GALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred ChhHhHHHHHccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 8999999999984 7666666553 3333333333333444333 33321 112222222 244455
Q ss_pred HHhhhhcccchhhhHHHHHHHHHHHHHHHhheeeeeeecCccC----Ccc--c-cccccccchhHHHHHhhhhcc-ccee
Q psy17648 256 LIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWG----WGK--V-KWTLDMENFPISLGVIVFSYT-SQIF 327 (530)
Q Consensus 256 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~~----~~~--~-~~~~~~~~~~~a~~~~~faf~-~~~~ 327 (530)
..++.+ ...+.+++++.+.....+...+.+.+..+.+. ..+ .++ . ........+..++...+=++. +..+
T Consensus 169 ~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~i~~vig~~~~~~~~ 246 (484)
T PRK11375 169 NVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV-GIGPIFDYIPSGIQKAENSGFLFLVVINAVVAVWAAPAVS 246 (484)
T ss_pred HHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhhccCcccccCCcchHHHHHHHHHHHHHHHHHHHcc
Confidence 555554 34555655555544443333222222222221 111 000 0 000001123333333333444 4558
Q ss_pred cccccccccCccchhhHHHHHHHHHHHHHHHHHhHh----hhhccCCchh--hhhccCCCchHHHHHHHHHHHHHHHhc-
Q psy17648 328 LPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLC----FLTFQNDTQQ--VITNNFDSAWFRGFVNFFLVVKALLSY- 400 (530)
Q Consensus 328 i~~i~~em~~p~~~~~~i~~s~~~~~~~Y~~~g~~g----y~~fG~~~~~--~il~~~~~~~~~~i~~~~~~i~~~~s~- 400 (530)
.|...+..|++++-.+...+++.+...+...+|+.. ...+|....+ .++..+.+.....+.-+.++++.+.+-
T Consensus 247 ~~D~tRy~k~~~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~~~dp~~i~~~~~~~~~~~~a~l~~v~a~~~tN~ 326 (484)
T PRK11375 247 ASDFTQNAHSFRAQALGQTLGLVVAYILFAVASVCIIAGASIHYGADTWNVLDIVQRWDSLFASFFAVLVILMTTISTNA 326 (484)
T ss_pred ccchhcccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 889999999887765555556665555554444332 3355554332 344443333333444455555555553
Q ss_pred cchhhhHHHHHHHhh
Q psy17648 401 PLPYYAACELLETNY 415 (530)
Q Consensus 401 pl~~~~~~~~~~~~~ 415 (530)
....++..-.+.+.+
T Consensus 327 ~~N~ys~~~~l~~l~ 341 (484)
T PRK11375 327 TGNIIPAGYQIAALA 341 (484)
T ss_pred HhhcccHHHHHHHhC
Confidence 356777776666655
No 71
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.18 E-value=0.0056 Score=65.30 Aligned_cols=154 Identities=13% Similarity=0.147 Sum_probs=83.5
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCc-CCCCccccCCCHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDP-NTGQRVRVRNSYVSI 197 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~-~~g~~~~~~~~y~~l 197 (530)
.|+.+++...+.+..+.+++.. ++.|....+.|+.+........+.......++..-.++..+ +.+ ..|..|+
T Consensus 35 gr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~~~~r~~~~~~~~-----~~T~~e~ 109 (487)
T TIGR02121 35 GRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSELWIAIGLTIGAYINWKFVAPRLRVYTEAAHN-----SITLPDF 109 (487)
T ss_pred CCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcC-----CccHHHH
Confidence 5778899999999888888765 66886666668643111111111112223333333332221 111 4588888
Q ss_pred HHHhhCch--hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 198 ASECFGPV--WGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 198 ~~~~~G~~--~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
.++=||++ .-+.+..+...+........-+...+..++.+++ .+....+++..+++..-+..-.++...+...+-
T Consensus 110 l~~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g---i~~~~~iii~~~i~~~Yt~~GGl~av~~TD~iQ 186 (487)
T TIGR02121 110 FENRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG---LDYKTGLLIGALIIVIYTFFGGFLAVSWTDFVQ 186 (487)
T ss_pred HHHHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 88888852 2333344444433333344444555666666653 344444555555566666666677776666655
Q ss_pred HHHHHH
Q psy17648 276 TMSHIV 281 (530)
Q Consensus 276 ~~~~~~ 281 (530)
.+..+.
T Consensus 187 ~~i~~~ 192 (487)
T TIGR02121 187 GLLMFF 192 (487)
T ss_pred HHHHHH
Confidence 444433
No 72
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.13 E-value=0.0054 Score=66.43 Aligned_cols=148 Identities=7% Similarity=-0.017 Sum_probs=88.8
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
.|+.+++...+.+..+.++++. ++.|-.....|+-+....+.........+.++..-+++.+ ..|..|+-
T Consensus 31 Gr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~---------~~T~~e~l 101 (552)
T TIGR03648 31 GRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFG---------KYTVPDFI 101 (552)
T ss_pred CCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------CccHHHHH
Confidence 5778899999999999998865 6788766666763211111111111122344444444332 44777777
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMS 278 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 278 (530)
++=||++..+.+..+...+..+......+...+..++.+++ .+...-+++.++++..-+..-.++...+...+-.+.
T Consensus 102 ~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g---i~~~~~iii~~~i~~iYt~~GG~~aV~~TD~iQ~ii 178 (552)
T TIGR03648 102 GDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE---VDFETGVFIGMAIVFFYAVLGGMKGVTWTQVAQYIV 178 (552)
T ss_pred HHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 77788645567666666666655556666666777766653 344444555555566666666777776666655433
Q ss_pred H
Q psy17648 279 H 279 (530)
Q Consensus 279 ~ 279 (530)
.
T Consensus 179 m 179 (552)
T TIGR03648 179 L 179 (552)
T ss_pred H
Confidence 3
No 73
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.13 E-value=0.0067 Score=64.95 Aligned_cols=153 Identities=13% Similarity=0.037 Sum_probs=85.4
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHhhhhcC-cCCCCccccCCCHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICC-YTGKILVECLYEID-PNTGQRVRVRNSYVS 196 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~-~~~~ll~~~~~~~~-~~~g~~~~~~~~y~~ 196 (530)
.|+.+++...+.+..+.+++.. ++.|....+.|+-.. ...+...+.. ....++..-.+... .+.| ..|..|
T Consensus 39 gr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~~-~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~-----~~T~~e 112 (502)
T PRK15419 39 GRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISES-WIAIGLTLGAWINWKLVAGRLRVHTEYNNN-----ALTLPD 112 (502)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-----ceeHHH
Confidence 5778999999999999999877 578877667786421 1111111111 11111111111000 0111 458888
Q ss_pred HHHHhhCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHH
Q psy17648 197 IASECFGP--VWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFW 274 (530)
Q Consensus 197 l~~~~~G~--~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 274 (530)
..++=||+ ++.+.+..+...+.....+..-+...+..++.+++ ++....+++.+++++.-+..-.++...+...+
T Consensus 113 ~l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g---i~~~~~iii~~~iv~iYt~~GGl~aV~~TD~i 189 (502)
T PRK15419 113 YFTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG---MSYETALWAGAAATILYTFIGGFLAVSWTDTV 189 (502)
T ss_pred HHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 88888886 23344444444444444444445555666666653 44555556666666667777777777777666
Q ss_pred HHHHHHH
Q psy17648 275 CTMSHIV 281 (530)
Q Consensus 275 ~~~~~~~ 281 (530)
-.+.++.
T Consensus 190 Q~~imi~ 196 (502)
T PRK15419 190 QASLMIF 196 (502)
T ss_pred HHHHHHH
Confidence 5544433
No 74
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=97.96 E-value=0.019 Score=61.25 Aligned_cols=147 Identities=15% Similarity=0.137 Sum_probs=90.6
Q ss_pred CCCccHHHHHHHHHhhhhc-cccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQG-MFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG-~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
+|+.+.+-..+....+.++ .-++++|....+.|+...-..+...+.......++..-..++.++ +...|..|+.
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~-----~~~~T~~d~l 111 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA-----RGATTIPDFL 111 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCCccHHHHH
Confidence 4666777777777777777 455899988888887532111111112222222222222222211 2266999999
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFW 274 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 274 (530)
++-||+++.+.+..+...+..+.-+..-+...+..++..++ .+...-.++.+.++..-+..-.++...++..+
T Consensus 112 ~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g---i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~i 184 (493)
T COG0591 112 EARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG---ISYVTGILIGALIVALYTFLGGLRAVVWTDFI 184 (493)
T ss_pred HHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHH
Confidence 99999447899999999999999999999999998866664 33443344444444444444455555444444
No 75
>PRK10484 putative transporter; Provisional
Probab=97.93 E-value=0.033 Score=59.97 Aligned_cols=153 Identities=13% Similarity=0.048 Sum_probs=76.9
Q ss_pred CCCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICC-YTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~-~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
-.|+.+++-..+.+..+.++++. ++.|-...+.|+....... .+.+.. ..++++..-+++. | ..|..|
T Consensus 36 agR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~-~~~~~~~~~~~~~~p~~~r~----~-----~~T~~e 105 (523)
T PRK10484 36 AGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEV-TAAIALIILALIFLPRYLKS----G-----ITTIPD 105 (523)
T ss_pred cCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHH-HHHHHHHHHHHHHHHHHHhc----C-----CccHHH
Confidence 35788899999999999998876 6788665566753211111 111111 2233333333321 1 458889
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHH-HHHHHHHHHhhhcccCC---CCccchhHHH----HHHHHHHHhhhhcccchhh
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMT-CILYVVVCGDLMVGSFP---DGAIDTRSWM----MLIGIFLIPLGFLKSLHHV 268 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~-~~~y~i~~~~~l~~~~~---~~~~~~~~~~----~i~~~~~~pl~~~~~l~~l 268 (530)
+.++-||++ .+.+......+..... +...+...+..++.++. -.+.+....+ ++.++++..-+..-.++..
T Consensus 106 ~l~~Ryg~~-~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~~~~gi~~~~~~~~~~~~~~~i~~~Yt~~GGl~aV 184 (523)
T PRK10484 106 FLEERYDKT-TRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVSELLGISYGAAIWLLVWLIGIIGAIYAVFGGLKAV 184 (523)
T ss_pred HHHHhcCch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 988889986 4544444433332222 22222222223333221 0122332222 1223344555556677777
Q ss_pred hHHHHHHHHHHHHH
Q psy17648 269 SMLSFWCTMSHIVI 282 (530)
Q Consensus 269 ~~~s~~~~~~~~~~ 282 (530)
.+...+-.+..++.
T Consensus 185 ~~TD~iQ~vim~i~ 198 (523)
T PRK10484 185 AVSDTINGIGLLIG 198 (523)
T ss_pred HHHHHHHHHHHHHH
Confidence 77666655444333
No 76
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.90 E-value=0.04 Score=57.70 Aligned_cols=86 Identities=7% Similarity=-0.003 Sum_probs=52.1
Q ss_pred hhcCcCCCCccccCCCHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHH
Q psy17648 178 YEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLI 257 (530)
Q Consensus 178 ~~~~~~~g~~~~~~~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~ 257 (530)
.++.-.+|+ +..++.++-+|+ +..++.++...+.........+.-.+.-++-++ +.+.....++.++..+
T Consensus 86 ~RlgivTG~------~l~~~ir~~~~~-~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~---gip~~~~v~i~~~~~~ 155 (439)
T PRK00701 86 AKLGIATGR------DLAQACRDRYPR-PVVWFLWIQAELAIMATDLAEVIGAAIALKLLF---GIPLLQGALITALDTF 155 (439)
T ss_pred hHhhhhcCC------CHHHHHHHHCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 344444554 899999999998 566777777777777777777776666665554 2344444444433222
Q ss_pred hh--hhcccchhhhHHHH
Q psy17648 258 PL--GFLKSLHHVSMLSF 273 (530)
Q Consensus 258 pl--~~~~~l~~l~~~s~ 273 (530)
.+ ...++.+.+.++..
T Consensus 156 ~~l~l~~~~y~~~E~i~~ 173 (439)
T PRK00701 156 LILMLQRRGFRPLEAIIG 173 (439)
T ss_pred HHHHHHhcCccHHHHHHH
Confidence 22 13446677766644
No 77
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.84 E-value=0.0096 Score=61.38 Aligned_cols=142 Identities=18% Similarity=0.192 Sum_probs=77.9
Q ss_pred CCccHHHHHHHHHhhhhccc-cchhHHHHHhccHHHHHHHHHHHHHHH---HHHHHHHHhhhhcCcCCCCccccCCCH--
Q psy17648 121 HKINEWQAAWNVTNAIQGMF-IVSLPFAVLRGGYWAIFAMIGIAYICC---YTGKILVECLYEIDPNTGQRVRVRNSY-- 194 (530)
Q Consensus 121 ~~~s~~~~~~~l~~~~iG~G-iL~lP~a~~~~G~~gii~~i~~~~~~~---~~~~ll~~~~~~~~~~~g~~~~~~~~y-- 194 (530)
++.|.+++.+..+.+.+|.| |++.|.|.+.+|.-++.++-+.+++.. |.-..|..-+++.+. ..+|
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGAvFWMWI~allGm~~~~~e~~L~~~yr~~~~--------~g~~~G 116 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGPGAVFWMWVTAFIGMATKFVESTLAQKYRERDA--------DGVFRG 116 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHeeeeCC--------CCCEec
Confidence 45899999999999999998 999999988887533555544444443 333333333332111 1135
Q ss_pred ---HHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHH-HHHHHHHhhhhcccchhhhH
Q psy17648 195 ---VSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMM-LIGIFLIPLGFLKSLHHVSM 270 (530)
Q Consensus 195 ---~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~ 270 (530)
.++-+...|| |-..+..+++..+....+....-...+.++..+ +.+ .|.. +...++.-+.....+|.++.
T Consensus 117 GP~yyi~~gl~~k-~lg~lfa~~~i~~f~~~~~~Q~nsi~~~~~~~~---~~~--~~v~~i~l~~l~~~vi~GGik~Ia~ 190 (425)
T TIGR00835 117 GPMYYIKKGLGMR-WLAVLFAVFLIASFGIGNMVQANAIASALSNAF---NVP--KLVTGIVLTVLTALIIFGGLKRIAK 190 (425)
T ss_pred ChHHHHHHHhCcc-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHc---CCc--HHHHHHHHHHHHHHHHhcCchHHHH
Confidence 6776666666 755665555222222223333334445555333 222 2322 22222333334456777766
Q ss_pred HHHHHH
Q psy17648 271 LSFWCT 276 (530)
Q Consensus 271 ~s~~~~ 276 (530)
++...+
T Consensus 191 v~~~lv 196 (425)
T TIGR00835 191 ISSVVV 196 (425)
T ss_pred HHHHHH
Confidence 665554
No 78
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.76 E-value=0.057 Score=55.60 Aligned_cols=142 Identities=15% Similarity=0.035 Sum_probs=83.3
Q ss_pred CCCccHHHHHHHHHhhhhccccchhHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFIVSLPF-AVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
+++.+..+..+.+..+-+|.|=++--. +=++-|+- .+..++...+..+....+ ..++...||+ +..+..
T Consensus 14 ~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~-ll~vills~l~~~~~Q~~---~arLgivTG~------~laq~i 83 (416)
T COG1914 14 RKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYS-LLWVILLSNLMAYILQEL---SARLGIVTGK------GLAEAI 83 (416)
T ss_pred HHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHHHhCC------cHHHHH
Confidence 344566666677777777777544332 22334542 222222222222222211 1233334554 888888
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
++-++| +..++.++...+....++++.....+--++-++. .+...-.+++++..+.+...++.+.+-.+....
T Consensus 84 r~~y~~-~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~---ip~~~g~iItav~~~iil~~~~~r~~E~~v~~l 156 (416)
T COG1914 84 RERYLP-GLGILLWILAEIAGIATDIAEVAGIAIALNLLFG---IPLIIGAVITAVDVLIILLLKGYRLLERVVLIL 156 (416)
T ss_pred HHHccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 889999 4678999999999999999999988888877763 234444455555555544445566665554443
No 79
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=97.63 E-value=0.086 Score=54.48 Aligned_cols=316 Identities=13% Similarity=0.156 Sum_probs=157.9
Q ss_pred HHHHHHHHHhhhhccccchhHHHHHh-cc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHH
Q psy17648 125 EWQAAWNVTNAIQGMFIVSLPFAVLR-GG--YW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASE 200 (530)
Q Consensus 125 ~~~~~~~l~~~~iG~GiL~lP~a~~~-~G--~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~ 200 (530)
....-+.+..-..|+|=|-.|-.+-+ +| |+ +.+..++.++.--.-+.+-. .. .| .++.+++++
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~---~~----~~------~~~~~l~~~ 71 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAV---AK----SG------GGIEDLASR 71 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH---hh----cC------CCHHHHhcc
Confidence 45566777888899999999966543 44 44 56666655555433332211 11 12 189999996
Q ss_pred hhCchhHHHHHHHHHHH-HHHH-----HHHHHHHHHHhhhcccCCC-CccchhHHHHHHHHHHHhhhhcccchhhhHHHH
Q psy17648 201 CFGPVWGARAVNLAQMI-ELLM-----TCILYVVVCGDLMVGSFPD-GAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSF 273 (530)
Q Consensus 201 ~~G~~~g~~~~~i~~~i-~~~~-----~~~~y~i~~~~~l~~~~~~-~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 273 (530)
. ||+++..+.-+.+.. -++. ..++|-+ .+.++++. .......+.+++..+.+.+++-+ =|-+.++.-
T Consensus 72 v-~~~f~~if~~~i~l~IGP~~aiPRtaa~sfe~----~i~p~~~~~~~~~~~ifs~iFF~i~~~l~~~p-~kivd~iGk 145 (427)
T PF05525_consen 72 V-GPKFALIFTILIYLSIGPLFAIPRTAAVSFEM----GIAPFFPENSNISLLIFSIIFFAITYLLSLNP-SKIVDRIGK 145 (427)
T ss_pred c-CcHHHHHHHHHHHHHHHhcccCcchhhhhHHH----hhhccCCcccccchhhhhHHHHHHHHHHHhch-hhHHHHHHH
Confidence 5 664443333222211 1111 1122222 23444442 23344445555555555555533 233344443
Q ss_pred HHHHHHHHHHHhheeeeeeecCc-cCCcccccccc--ccch------hHHHHHhhhhcccceecccccc-cccCccchhh
Q psy17648 274 WCTMSHIVINVVILGYCLLQIGD-WGWGKVKWTLD--MENF------PISLGVIVFSYTSQIFLPTLEG-NLIDRSKFDW 343 (530)
Q Consensus 274 ~~~~~~~~~~~iii~~~~~~~~~-~~~~~~~~~~~--~~~~------~~a~~~~~faf~~~~~i~~i~~-em~~p~~~~~ 343 (530)
+-+-..+..++++++.++..... ....+..+..+ ..++ ..++..+.|+-.- +..+.+ ..+|+++..|
T Consensus 146 ~LTP~LL~~l~ilii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMD~laal~Fg~iI---i~~i~~~g~~~~k~~~~ 222 (427)
T PF05525_consen 146 FLTPILLILLAILIIKGIFSPIGPPQAPSGAYASNPFFKGFLEGYQTMDALAALAFGIII---INAIRQKGYKDKKEIKK 222 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCccccchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHH---HHHHHHhCCCCHHHHHH
Confidence 33433344444444444433221 11111011000 1111 2334444444322 222222 2234444333
Q ss_pred ----HHHHHHHHHHHHHHHHHhHhhhhc---cCCch-hhhhccCCC----chHHHHHHHHHHHHHHHhccchhhhHHHHH
Q psy17648 344 ----MLDWSHIAAAIFKSMFGYLCFLTF---QNDTQ-QVITNNFDS----AWFRGFVNFFLVVKALLSYPLPYYAACELL 411 (530)
Q Consensus 344 ----~i~~s~~~~~~~Y~~~g~~gy~~f---G~~~~-~~il~~~~~----~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~ 411 (530)
+-.++.....++|...+..|...- ++... +.++....+ +.-..+..+.+.++++++--...-.+.+.+
T Consensus 223 ~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~~~~g~~lL~~i~~~~~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf 302 (427)
T PF05525_consen 223 YTIKAGLIAGILLALIYGGLAYLGATSSGSFPDDINGAELLSQIANHLFGSAGQILLGIIVFLACLTTAIGLISACAEYF 302 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCcccccCCCCHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445566678887777776543 33333 244444322 223456677788889999888888899999
Q ss_pred HHhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhh
Q psy17648 412 ETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKL 485 (530)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~ 485 (530)
++.+. | .+ . .....+..++++++|.. .++.++.+. ...+.++.|..+.+..
T Consensus 303 ~~~~~--k---is----------Y--~~~v~i~~i~S~~ian~--Gl~~Ii~~s----~PiL~~iYP~~IvLIl 353 (427)
T PF05525_consen 303 SELFP--K---IS----------Y--KVWVIIFTIFSFIIANL--GLDQIIKIS----VPILMFIYPVAIVLIL 353 (427)
T ss_pred HHHhc--c---cC----------h--HHHHHHHHHHHHHHHHh--CHHHHHHHH----HHHHHHHhHHHHHHHH
Confidence 88763 1 11 0 12334455666666643 577777763 3677788888776644
No 80
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.25 E-value=0.0012 Score=69.43 Aligned_cols=233 Identities=14% Similarity=0.143 Sum_probs=106.6
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhc--cHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRG--GYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYV 195 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~--G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~ 195 (530)
++|+.+.++-+..-.+..+....+.+....... ++. +++.+++-.++......+. ...++|+|- ++.
T Consensus 5 ~~R~~~~~~~~~iW~~~~~~~~~~~~G~~~~~~gL~~~~ailai~~G~~l~~i~~~~~----~~~G~r~Gl------~~~ 74 (440)
T PF02133_consen 5 SERTWSPWSLFWIWFGANISIATFVTGALGVALGLSFWQAILAILIGNLLGAILVALM----GIIGPRTGL------PTM 74 (440)
T ss_dssp GG--B-HHHHHHHHCHHH-SCHHH-HHHHHHCCCS-HHHHHHHHHHHHHHHHHHHHHH----THHHHCC---------HH
T ss_pred hcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHHHh----cccccccCC------Cch
Confidence 445566777776666666665555444443233 334 3333333222222221111 123445554 788
Q ss_pred HHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-c----cc-------hhHHH--HHHHHHHHhhhh
Q psy17648 196 SIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG-A----ID-------TRSWM--MLIGIFLIPLGF 261 (530)
Q Consensus 196 ~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~-~----~~-------~~~~~--~i~~~~~~pl~~ 261 (530)
-+.|..||. +|..+..+...+...+-........++.+..+.... + .+ ...++ ++..++.... .
T Consensus 75 v~sR~~FG~-~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 152 (440)
T PF02133_consen 75 VLSRASFGY-RGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGIIFGSFLWIGNAIIGIALPLWVCFFIFWLIQTLF-A 152 (440)
T ss_dssp HHTTTTS-T-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----HH-----------HHHHHHHHHHHHH-H
T ss_pred hcchhccCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcchhhhhhhhcchhhHHHHHHHHHHHHHHH-H
Confidence 899999998 688999888888888888888888888777654321 1 01 11111 1111222222 2
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhheeeeeeecCccC--CccccccccccchhHHHHHhhhhccc-ceecccccccccCc
Q psy17648 262 LKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWG--WGKVKWTLDMENFPISLGVIVFSYTS-QIFLPTLEGNLIDR 338 (530)
Q Consensus 262 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~~--~~~~~~~~~~~~~~~a~~~~~faf~~-~~~i~~i~~em~~p 338 (530)
...++.+.++..+.........+......... .+.+ .+....+.....+..++...+-.+.. ..+.+...+.+|++
T Consensus 153 ~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~DysRy~~~~ 231 (440)
T PF02133_consen 153 IYGMKALRRLAVIAAPILLVVFIGMLIWALSK-AGGGPLLSAPASPSPSGSFLAAIALVIGSWISWAPNASDYSRYAKSD 231 (440)
T ss_dssp CTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-CT-HHHCCS--S----S-HHHHHHHHHCCCHHHHCCCHHHHTTC--H
T ss_pred hcCHHHHHhHHhhhhHHHHhhhhheeEEEeec-CCcchhhhCcccchhHHHHHHHHHHHHhhhhhhhhccccHHhhCCCC
Confidence 23455555555444333222222221211111 1111 00000011111344444444333333 35566788889988
Q ss_pred cchhhHHHHHHHHHHHHHHHHHhHhh
Q psy17648 339 SKFDWMLDWSHIAAAIFKSMFGYLCF 364 (530)
Q Consensus 339 ~~~~~~i~~s~~~~~~~Y~~~g~~gy 364 (530)
++-.+....+.....+...++++++.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~g~lg~ 257 (440)
T PF02133_consen 232 TSAWWGFWLGFPGGFIPFVLVGILGA 257 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEeehhhhHHHHHHHHHHHHH
Confidence 77666666676666666666665544
No 81
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=97.02 E-value=0.53 Score=48.52 Aligned_cols=172 Identities=10% Similarity=0.010 Sum_probs=97.7
Q ss_pred CCCHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhH
Q psy17648 191 RNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSM 270 (530)
Q Consensus 191 ~~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 270 (530)
..+++|....=++.+..|.+..+..++..+.-.++-++-.+..+.-++. .+...-+++..+++..-...-.++..+|
T Consensus 103 kyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g---v~~~vgv~ig~ilm~~Yvv~GGM~atTW 179 (529)
T COG4147 103 KYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG---VPYHVGVVIGGILMMVYVVLGGMKATTW 179 (529)
T ss_pred CcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC---CCceeehhhHhHHHHHHHHhcchhhhhH
Confidence 3588888776676656777777766666666667777777777776663 4455555566666666666778888888
Q ss_pred HHHHHHHHHHHHHHhhee-----eeeeecCccCC----c-------cccccccccchhHHHHHhhhhcccceeccccccc
Q psy17648 271 LSFWCTMSHIVINVVILG-----YCLLQIGDWGW----G-------KVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGN 334 (530)
Q Consensus 271 ~s~~~~~~~~~~~~iii~-----~~~~~~~~~~~----~-------~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~e 334 (530)
.+++--+..+...++..+ .+....+..+. + ..++.....+-...++..+--..|...+|.+.-.
T Consensus 180 ~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~~~~~pGl~~~~~i~~isl~~aLm~GTAgLPHil~R 259 (529)
T COG4147 180 VQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGSDIMEPGLLYKDPIDFISLGFALMVGTAGLPHILMR 259 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcccccCCCCcccCHHHHHHHHHHHHHccCCCCeEEEE
Confidence 887754433333222111 11111111000 0 0011111122223333333333366667776543
Q ss_pred c---cCccchhhHHHHHHHHHHHHHHHHHhHhhh
Q psy17648 335 L---IDRSKFDWMLDWSHIAAAIFKSMFGYLCFL 365 (530)
Q Consensus 335 m---~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~ 365 (530)
- .+-+.-|+.+.++...+..+|+..-+.++.
T Consensus 260 FfTvp~~k~AR~Sv~wA~~fIg~fYi~~~~ig~~ 293 (529)
T COG4147 260 FFTVPDAKEARKSVFWATGFIGIFYILTPIIGAG 293 (529)
T ss_pred EEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 233445789999999999999887766654
No 82
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=96.85 E-value=0.37 Score=49.22 Aligned_cols=83 Identities=13% Similarity=0.074 Sum_probs=56.5
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhh--cccchhhhH
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGF--LKSLHHVSM 270 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~~l~~ 270 (530)
+..|..++-+||+ ..++.++...+......+..+...+..++-++ +.+...+.++.++..+.+.+ .++.+.+.+
T Consensus 43 ~l~~~~~~~~g~~-~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~---g~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~ 118 (358)
T PF01566_consen 43 GLAEGIRERFGRG-WAWFLWILIFLANIATQAAEIIGIAIALNLLF---GIPLWIWVLLVAVIAILLLWLSSGGYRRLER 118 (358)
T ss_pred ChhhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 8888888888984 46777777777777777777777777776655 34556666666555555544 667788766
Q ss_pred HHHHHHHHH
Q psy17648 271 LSFWCTMSH 279 (530)
Q Consensus 271 ~s~~~~~~~ 279 (530)
+..+.....
T Consensus 119 ~~~~lv~~m 127 (358)
T PF01566_consen 119 ILKVLVAVM 127 (358)
T ss_pred HHHHHHHHH
Confidence 665544443
No 83
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=96.74 E-value=0.48 Score=48.83 Aligned_cols=92 Identities=23% Similarity=0.208 Sum_probs=59.9
Q ss_pred CCCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHH---HHHHHHHHHhhhhcCcCCCCccccCCCH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYIC---CYTGKILVECLYEIDPNTGQRVRVRNSY 194 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~---~~~~~ll~~~~~~~~~~~g~~~~~~~~y 194 (530)
.+++.|.+++++..+.+.+|.|= .+...|+...|.-.+.++-+.+++. -|.=..|.+-+++-+++ |+ ....-
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~-G~---~~GGP 90 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDED-GE---YRGGP 90 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCC-CC---EeecH
Confidence 45579999999999999999986 4578888888864355555444443 34444455545443221 11 12345
Q ss_pred HHHHHHhhCchhHHHHHHHH
Q psy17648 195 VSIASECFGPVWGARAVNLA 214 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~ 214 (530)
.++.++.+|.||...+..++
T Consensus 91 ~yyi~~gl~~k~la~~fai~ 110 (416)
T PF01235_consen 91 MYYIEKGLGSKWLAILFAIF 110 (416)
T ss_pred HHHHHHHhccchHHHHHHHH
Confidence 67777888888876666666
No 84
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=96.44 E-value=1.4 Score=45.70 Aligned_cols=316 Identities=11% Similarity=0.050 Sum_probs=152.1
Q ss_pred cHHHHHHHHHhhhhccccchhHHHHHh-cc--HH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHH
Q psy17648 124 NEWQAAWNVTNAIQGMFIVSLPFAVLR-GG--YW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIAS 199 (530)
Q Consensus 124 s~~~~~~~l~~~~iG~GiL~lP~a~~~-~G--~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~ 199 (530)
..+..-+.+..-..|+|=|-.|-.+-+ +| |+ +.+..++.++.--.-+.+ .-+. +| .++.++++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgii-ava~------~~------g~~~~l~~ 75 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVV-ALAK------VG------GGVDSLST 75 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH-HHhh------cC------CCHHHHhh
Confidence 456677788888999999999976543 44 44 455554444433222211 1111 11 28899998
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHH
Q psy17648 200 ECFGPVWGARAVNLAQMIELLMTCILYV----VVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 200 ~~~G~~~g~~~~~i~~~i~~~~~~~~y~----i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
+. ||+++. +......+ +.|-+.+-= +...-.+++++++...+...+.+++..+.+.+++-+ =|-+.++.-+-
T Consensus 76 rv-~~~f~~-~f~~~i~l-~IGP~~aiPRtaavsfEm~i~p~~~~~~~~~~ifs~iFF~i~~~l~l~p-~klvd~iGK~L 151 (439)
T PRK15433 76 PI-GKVAGV-LLATVCYL-AVGPLFATPRTATVSFEVGIAPLTGDSALPLFIYSLVYFAIVILVSLYP-GKLLDTVGNFL 151 (439)
T ss_pred hc-chHHHH-HHHHHHHH-HHhhccccCCccccchhheeeccCCcccHHHHHHHHHHHHHHHHHHcCh-hhHHHHhHHHH
Confidence 65 663333 22222211 111110000 000012344454311122223344444455555433 22333333333
Q ss_pred HHHHHHHHHhheeeeeeecCccCCcc--ccc---cc--c-c--cchhHHHHHhhhhcccceecccccc-cccCccchhh-
Q psy17648 276 TMSHIVINVVILGYCLLQIGDWGWGK--VKW---TL--D-M--ENFPISLGVIVFSYTSQIFLPTLEG-NLIDRSKFDW- 343 (530)
Q Consensus 276 ~~~~~~~~~iii~~~~~~~~~~~~~~--~~~---~~--~-~--~~~~~a~~~~~faf~~~~~i~~i~~-em~~p~~~~~- 343 (530)
+-..+..++++++.++... .....+ ..+ ++ . . -+-..+++...|+-.-. ..+.+ ..+++++..|
T Consensus 152 TP~LL~~l~~lii~~i~~p-~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal~Fg~iii---~~i~~~G~~~~~~~~k~ 227 (439)
T PRK15433 152 APLKIIALVILSVAAIVWP-AGSISTATEAYQNAAFSNGFVNGYLTMDTLGAMVFGIVIV---NAARSRGVTEARLLTRY 227 (439)
T ss_pred HHHHHHHHHHHHHHHHhcC-CCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH---HHHHHcCCCCHHHHHHH
Confidence 3333333333333443331 111110 111 11 0 0 11234566666664333 33333 3556665433
Q ss_pred ---HHHHHHHHHHHHHHHHHhHhhhh---ccCC-chhhhhccCC----CchHHHHHHHHHHHHHHHhccchhhhHHHHHH
Q psy17648 344 ---MLDWSHIAAAIFKSMFGYLCFLT---FQND-TQQVITNNFD----SAWFRGFVNFFLVVKALLSYPLPYYAACELLE 412 (530)
Q Consensus 344 ---~i~~s~~~~~~~Y~~~g~~gy~~---fG~~-~~~~il~~~~----~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~ 412 (530)
+-.++.....++|...+..|... +++. ..+.++...- .++...+..+.+.++++++.-...+.+.+.++
T Consensus 228 t~~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~~~~g~~il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~ 307 (439)
T PRK15433 228 TVWAGLMAGVGLTLLYLALFRLGSDSASLVDQSANGAAILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFA 307 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCCCcHhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667888877777643 3322 1223333221 22445667777888889998888888888887
Q ss_pred HhhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHh
Q psy17648 413 TNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLK 484 (530)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~ 484 (530)
+.+. .+ ......+..++++++|.. .++.++++ ....+.++.|....+.
T Consensus 308 ~~~~------is------------Y~~~v~i~~l~S~~lSn~--G~~~II~~----s~PiL~~iYP~~IvLi 355 (439)
T PRK15433 308 QYVP------LS------------YRTLVFILGGFSMVVSNL--GLSQLIQI----SVPVLTAIYPPCIALV 355 (439)
T ss_pred hhcC------Cc------------HHHHHHHHHHHHHHHHHh--HHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 7541 01 012344455556666532 56677766 3367777788766654
No 85
>PHA02764 hypothetical protein; Provisional
Probab=95.86 E-value=1.9 Score=42.23 Aligned_cols=87 Identities=17% Similarity=0.075 Sum_probs=49.9
Q ss_pred CCCCccHHHHHH-HHHhhhhccccchhHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHHHhhhhcC---cCCCCccccCC
Q psy17648 119 SRHKINEWQAAW-NVTNAIQGMFIVSLPFAVLRG--GYWAIFAMIGIAYICCYTGKILVECLYEID---PNTGQRVRVRN 192 (530)
Q Consensus 119 ~~~~~s~~~~~~-~l~~~~iG~GiL~lP~a~~~~--G~~gii~~i~~~~~~~~~~~ll~~~~~~~~---~~~g~~~~~~~ 192 (530)
+-|+.+.+.+++ |+.....|.++ +.|+=+... |.-.+.++++.|+++... +.|+.|+. |++|+
T Consensus 10 LVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~nlLLAWLLGGLlALPg----AL~YAELGSAmPrAGG------ 78 (399)
T PHA02764 10 IIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVNLLFAILIGAVFEIPL----LLMYYKLTTKFPLNGG------ 78 (399)
T ss_pred ceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchhHHHHHHHHHHHHHHH----HHHHHHHHhhCCCCCc------
Confidence 678899999998 44444444443 556533332 432334444444444333 34444433 67776
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHH
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIE 218 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~ 218 (530)
+|..+-| +|||. ...+..+..+..
T Consensus 79 dYVYISR-AFGP~-~GFLvG~a~WLt 102 (399)
T PHA02764 79 DYAYIRT-AFSSK-FYTIFGISLWLT 102 (399)
T ss_pred eEEEhHH-hhCcc-HHHHHHHHHHHH
Confidence 7777666 89994 556666666554
No 86
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=95.72 E-value=3.2 Score=43.41 Aligned_cols=213 Identities=14% Similarity=0.215 Sum_probs=98.2
Q ss_pred hhhcccchhhhHHHHHHHHHHHHHHHhheeeeeeecCccC-Ccccc-ccccccc----hhHHHHHhhhhcc--cceeccc
Q psy17648 259 LGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWG-WGKVK-WTLDMEN----FPISLGVIVFSYT--SQIFLPT 330 (530)
Q Consensus 259 l~~~~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~~~-~~~~~-~~~~~~~----~~~a~~~~~faf~--~~~~i~~ 330 (530)
++..+.++.++++..+......++++..+++...+....+ ..+.+ ...+.++ +..++. ...++- ..-|+|.
T Consensus 184 l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~~~~~~~p~~~~~~~~~~w~~~~~~~-~~v~~~Atl~lN~~D 262 (497)
T COG1953 184 LVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGSSILGELPAGTVSGSNSSWAFLAGIA-AWVGFWATLALNIPD 262 (497)
T ss_pred HHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCcCccccCCCCCCCcchhHHHHHHHHH-HHHHHHHHHhcCCch
Confidence 4444567777777776665555555544433333222211 00111 1111111 222221 222221 3567888
Q ss_pred ccccccCccchhhHHHHHHHHHHHHHHHH----HhHhhhhccCCch--hhhhccCCCchHHH-HHHHHHHHHHHHhc-cc
Q psy17648 331 LEGNLIDRSKFDWMLDWSHIAAAIFKSMF----GYLCFLTFQNDTQ--QVITNNFDSAWFRG-FVNFFLVVKALLSY-PL 402 (530)
Q Consensus 331 i~~em~~p~~~~~~i~~s~~~~~~~Y~~~----g~~gy~~fG~~~~--~~il~~~~~~~~~~-i~~~~~~i~~~~s~-pl 402 (530)
..+.-|+|+.-.+--.++.++.+.+..++ +...+..||+... .++..++.+..... ++-+.++++.++.- ..
T Consensus 263 FsRfa~s~~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~~~~~~~fl~~l~~~iati~~Ni~a 342 (497)
T COG1953 263 FTRFAKSQKAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFLSGFYAAFLAGLTFAVATISTNIAA 342 (497)
T ss_pred hhcccCChhhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhccchHHHHHHHHHHHHHHHhhhHHh
Confidence 88888887764433344455555444444 4456778998854 47888887654443 44444444443331 11
Q ss_pred hhhhHHHHHHHhhccCCCCCCCccccCCcchhhHHHH-HHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhh
Q psy17648 403 PYYAACELLETNYFKGGDSQFPSIWHLDGELKVWGLM-FRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYF 481 (530)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~ 481 (530)
...++..-+.+. +|+..+.++. .++ ..+.+.++.+-+=..-..|...++..|++.+...+.++--.+
T Consensus 343 N~vsp~~D~s~l--------~Pk~in~krg----~liaA~ial~~~PW~l~~s~s~f~~~L~~yg~~LgpiaGVmiaDyf 410 (497)
T COG1953 343 NIVSPGYDLSAL--------FPKYINIKRG----GLIAAIIALLICPWNLLESSSSFTTFLGSYGVFLGPIAGVMIADYF 410 (497)
T ss_pred ccCChHHHHHHh--------cccccchhhh----HHHHHHHHHHHcChHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222 2332221111 111 111222222322222235777777777777766665554444
Q ss_pred HHh
Q psy17648 482 HLK 484 (530)
Q Consensus 482 ~l~ 484 (530)
..|
T Consensus 411 lir 413 (497)
T COG1953 411 LVR 413 (497)
T ss_pred hhh
Confidence 443
No 87
>KOG2083|consensus
Probab=95.23 E-value=0.044 Score=57.47 Aligned_cols=228 Identities=13% Similarity=0.189 Sum_probs=125.0
Q ss_pred ccHHHHHHH-HHhhhhcccc-chhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHH
Q psy17648 123 INEWQAAWN-VTNAIQGMFI-VSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIAS 199 (530)
Q Consensus 123 ~s~~~~~~~-l~~~~iG~Gi-L~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~ 199 (530)
-++|.+++. .+-.+.|.=+ |=+++...|+|+. +++++.+...++..|..=-.-...+-.-++|+ .|--+++
T Consensus 30 fg~~~gv~~~cmlni~gv~lflrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~Gg------~yflis~ 103 (643)
T KOG2083|consen 30 FGWWDGVFVRCMLNIFGVILFLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSGG------VYFLISR 103 (643)
T ss_pred EeeeehhhhhhhHHHHHHHHhhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccCc------EEEEEEe
Confidence 455555543 2223444433 4588999999987 65555544444444431111101111123343 4544444
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhH-HHHHHHHHHHhhhhcccchhhhHHHHHHHHH
Q psy17648 200 ECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRS-WMMLIGIFLIPLGFLKSLHHVSMLSFWCTMS 278 (530)
Q Consensus 200 ~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~-~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 278 (530)
.+|+.+| --+.+.+.+.+.-.|..|.+-+++.+.+++...+....- ...+..++++-++. -.+++-++++.+..+.
T Consensus 104 -slg~efg-gsigiIy~f~~aVa~am~~vgfaEsv~~l~~~~s~~~i~gi~~vt~~ill~i~~-ag~~w~~k~q~~ll~i 180 (643)
T KOG2083|consen 104 -SLGPEFG-GSIGIIYAFANAVATAMYVVGFAESVAHLFETESKEMIDGIGSVTVLILLAINV-AGVEWEAKLQIVLLLI 180 (643)
T ss_pred -ccccccc-chhHHHHHHHHHHHHHHhhhhHHHHHHHHHHhccHHHhcchhHHHHHHHHHhhh-ccchhHHHHHHHHHHH
Confidence 6787644 456666777777788899999999988887643211100 11122222222222 2567777777765544
Q ss_pred HHHHHHhheeeeeeecCc-----cCCcc--c--ccccccc---chhHHHHHhhhhcccceecccccccccCccc-hhhHH
Q psy17648 279 HIVINVVILGYCLLQIGD-----WGWGK--V--KWTLDME---NFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWML 345 (530)
Q Consensus 279 ~~~~~~iii~~~~~~~~~-----~~~~~--~--~~~~~~~---~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i 345 (530)
.+++..--++..+....+ .++.. . +...++. .|+.-|+++.=+..|.-.=..+...+|+|++ .|+..
T Consensus 181 l~iai~~f~~gs~~~~~~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq~~IP~Ga 260 (643)
T KOG2083|consen 181 LLIAIADFLVGSFFSPNEFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQKAIPLGA 260 (643)
T ss_pred HHHHHHHhhhhhccChhhhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCchhhcccch
Confidence 444433222222221111 11110 0 0111222 5667777777778777777788899999998 68888
Q ss_pred HHHHHHHHHHHHHH
Q psy17648 346 DWSHIAAAIFKSMF 359 (530)
Q Consensus 346 ~~s~~~~~~~Y~~~ 359 (530)
..++...+.+|+.+
T Consensus 261 L~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 261 LLAIGVSTLLYLIF 274 (643)
T ss_pred hhhhhhhhhhhhhh
Confidence 88888888888654
No 88
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.76 E-value=5.2 Score=40.30 Aligned_cols=105 Identities=15% Similarity=0.162 Sum_probs=69.9
Q ss_pred ccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHh
Q psy17648 123 INEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYIC-CYTGKILVECLYEIDPNTGQRVRVRNSYVSIASEC 201 (530)
Q Consensus 123 ~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~-~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~ 201 (530)
.+.+..+-+=..++-|+|-+.=|..-.+-||+...+.+++|.+- .-.-.+..... .. ++.|+ |..+++++.
T Consensus 52 ~~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~-Sv-R~~G~------Si~~i~~~~ 123 (376)
T PF02554_consen 52 TNKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMA-SV-RHKGK------SIGEIAGKY 123 (376)
T ss_pred CchHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhh-hh-cCCCc------cHHHHHHHH
Confidence 44566777778888999998888766888998433333333332 21111111111 11 22233 999999999
Q ss_pred hCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17648 202 FGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVG 236 (530)
Q Consensus 202 ~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~ 236 (530)
.||+ ++.+..+..++.+.....++.....+.+..
T Consensus 124 lG~~-~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 124 LGKR-AKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9995 888898888888888888887777766543
No 89
>KOG2349|consensus
Probab=94.47 E-value=0.28 Score=52.34 Aligned_cols=235 Identities=10% Similarity=0.003 Sum_probs=110.3
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
.|+..++...+.++.+.+|++- +++|.-..+.|.- ...+.+.... ..+..++-..+ ..- +.+ ..+-.|..
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~----~~~~~~~~l~--~~~~~~~~f~P-vf~-~~~-v~~~~eYl 114 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQ----YWFFEWNALL--SVLLLGWIFIP-VFY-RLG-VTTMYEYL 114 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHH----HHHHHHHHHH--HHHhhheEEEE-EEE-ecC-eeehhHHH
Confidence 4778889888999999999876 7899877676742 1111111111 12223332221 000 001 22344444
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMS 278 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 278 (530)
++-||++ .+....+...+..+.-...++-.-+..+++... .+.....++..+++..-+....+|..-|+=.+-++.
T Consensus 115 ~~Rf~~~-~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg---~~~~l~~~~~~~ic~~YT~~GGlkaVi~TDv~Q~~i 190 (585)
T KOG2349|consen 115 EKRFGGR-VRYLATLSFILMIFLYLPVDMYAPALAINQVTG---INLYLIVVILGLICVFYTALGGLKAVIWTDVVQTVI 190 (585)
T ss_pred HHHhccc-chhhHHHHHHHHHHhheeeeEeehHHHHHHHhc---cCceeehHHHHHHHHHHHHhcCeeEEEEhhHHHHHH
Confidence 5566664 455555555444433333322222233333332 111222223334444445555666665555555556
Q ss_pred HHHHHHhheeeeeeecCccC------Cc----cc--ccccc-------ccchhHHHHHhhhhcccceecccccccccCcc
Q psy17648 279 HIVINVVILGYCLLQIGDWG------WG----KV--KWTLD-------MENFPISLGVIVFSYTSQIFLPTLEGNLIDRS 339 (530)
Q Consensus 279 ~~~~~~iii~~~~~~~~~~~------~~----~~--~~~~~-------~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~ 339 (530)
++.....+++.+....+..+ .+ +. ++..| |.-+......-...|+.+++...=+-.+|+-+
T Consensus 191 ml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~dp~vr~t~W~~~~Gg~~~~l~~~~vnQ~~VQR~lsl~slk 270 (585)
T KOG2349|consen 191 MLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRDPTVRHTPWSLLFGGTIMWLSYYGVNQLIVQRYLSLPSLK 270 (585)
T ss_pred HHHHHHHHhheeehhcCcccceeeecccCCceeecccccCCCcccccchhHhcCCcHHHHHHHhhhHHHHhHHhccccHH
Confidence 66655555555544322111 00 00 01111 22122333445556666666655555556656
Q ss_pred chhhHHHHHHHHHHHH---HHHHHhHhhhhc
Q psy17648 340 KFDWMLDWSHIAAAIF---KSMFGYLCFLTF 367 (530)
Q Consensus 340 ~~~~~i~~s~~~~~~~---Y~~~g~~gy~~f 367 (530)
+-++++........+. +...|+..|..|
T Consensus 271 ~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y 301 (585)
T KOG2349|consen 271 HAKPSLLLFGYGVLLIMFIMVFVGMIIYALY 301 (585)
T ss_pred HhhhhhhhhhhHHHHHHHhhcccceeEeeec
Confidence 6666665555444444 444555555544
No 90
>KOG1291|consensus
Probab=94.04 E-value=8.5 Score=39.83 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=42.4
Q ss_pred hhcCcCCCCccccCCCHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCC
Q psy17648 178 YEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFP 239 (530)
Q Consensus 178 ~~~~~~~g~~~~~~~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~ 239 (530)
.+++..+|+ +.++++++-+.+ |.++..|+..=+..++.=+...+-.+-.++-++.
T Consensus 81 ARLGvVTG~------hLAe~Cr~~Ypk-~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~ 135 (503)
T KOG1291|consen 81 ARLGVVTGK------HLAEICREEYPK-WPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN 135 (503)
T ss_pred HHHcccccH------HHHHHHHHHccc-cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC
Confidence 456777776 899999999887 8999999888777777777777776666665553
No 91
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=93.20 E-value=12 Score=38.70 Aligned_cols=129 Identities=11% Similarity=0.024 Sum_probs=69.5
Q ss_pred HHHHhhhhccccchhHHHHHhccHH-H--HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhhCchh
Q psy17648 130 WNVTNAIQGMFIVSLPFAVLRGGYW-A--IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVW 206 (530)
Q Consensus 130 ~~l~~~~iG~GiL~lP~a~~~~G~~-g--ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~G~~~ 206 (530)
+.+..+-+|.|-+. +-.++|-- | .++.++++.+..+... +...++.-.+|+ +..+++++-+++ +
T Consensus 11 ~lva~a~idPG~i~---t~~~aGa~fGy~LLW~llls~~~~~~~Q---~~aaRlg~vTg~------~l~~~~r~~~~~-~ 77 (390)
T TIGR01197 11 FLMSIAYIDPGNYS---TDLQAGAAAGYKLLWVLLLSNIMALLLQ---RLCARLGVVTGL------DLAEVCREHYPK-V 77 (390)
T ss_pred HHHHHHhcCchHHH---HHHHHHHHhCHHHHHHHHHHHHHHHHHH---HHHHHheeecCC------CHHHHHHHHCCC-c
Confidence 34444556776443 12333422 2 3444444444333332 333444555554 899999999998 6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHH--HHHHHHhhhhcccchhhhHHHHH
Q psy17648 207 GARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMML--IGIFLIPLGFLKSLHHVSMLSFW 274 (530)
Q Consensus 207 g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i--~~~~~~pl~~~~~l~~l~~~s~~ 274 (530)
.++..++...+...+.....+.-.+.-++-+++ .+.....++ ...+.+.+...++.+.+..+-..
T Consensus 78 ~~~~~~~~~~l~ii~~~~~e~~G~a~al~ll~g---~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~ 144 (390)
T TIGR01197 78 PRITLWILAELAIIATDMAEVIGTAIALNLLSH---IPLWGGVLITIVDVFLFLFLDKPGLRILEAFVAL 144 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHH
Confidence 777777666666666666666655555555553 333333333 22333344445677777666433
No 92
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=92.31 E-value=16 Score=37.94 Aligned_cols=212 Identities=12% Similarity=0.098 Sum_probs=96.6
Q ss_pred CccHHHHHHHHHhhhhcccc-chhHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHH
Q psy17648 122 KINEWQAAWNVTNAIQGMFI-VSLPFAVLRGG-YWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIAS 199 (530)
Q Consensus 122 ~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G-~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~ 199 (530)
-.|...-+...+++.+|-|= .-.||...+.| -.-++.+++.-+...+-+ ++.|-. .+++.++ ....+|..+..
T Consensus 8 w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPl-li~Ef~--iGr~~~~--~~~~a~~~l~~ 82 (439)
T COG0733 8 WSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPL-LLAEFA--IGRRGRK--NAVGAFRKLAP 82 (439)
T ss_pred hhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHH-HHHHHH--hhhhcCC--ChhHHHHHhcc
Confidence 35567778889999999985 67998766544 211333333333333333 333432 2222111 12346666654
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-------CCC-Cc--------cch-hHHHHHH---HHHHHhh
Q psy17648 200 ECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGS-------FPD-GA--------IDT-RSWMMLI---GIFLIPL 259 (530)
Q Consensus 200 ~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~-------~~~-~~--------~~~-~~~~~i~---~~~~~pl 259 (530)
+|+ .+ .+.+...+..+..+.-|.++.+-.+.-+ +++ .. ... ....+.. ..++..+
T Consensus 83 ---~~~-~~-~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~ 157 (439)
T COG0733 83 ---KKK-WE-WIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTAL 157 (439)
T ss_pred ---Ccc-ch-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHH
Confidence 342 22 3333334445555555555555333211 110 00 001 1111111 1111112
Q ss_pred hhcccchh-hhHHHHHHHHHHHHHHHhheeeeeeecCc-cCCc-----cccccccccchhHHHHHhhhhcc-cceecccc
Q psy17648 260 GFLKSLHH-VSMLSFWCTMSHIVINVVILGYCLLQIGD-WGWG-----KVKWTLDMENFPISLGVIVFSYT-SQIFLPTL 331 (530)
Q Consensus 260 ~~~~~l~~-l~~~s~~~~~~~~~~~~iii~~~~~~~~~-~~~~-----~~~~~~~~~~~~~a~~~~~faf~-~~~~i~~i 331 (530)
...|.+++ ..+.+-+-.-...+..++++++.+..... .|.+ +.....|+..+..+++...|+.+ |...+.+.
T Consensus 158 iv~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitY 237 (439)
T COG0733 158 IVSRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITY 237 (439)
T ss_pred HHHHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333 33333333333333333333444432211 1110 11111234556789999999987 56677777
Q ss_pred cccccCccchhh
Q psy17648 332 EGNLIDRSKFDW 343 (530)
Q Consensus 332 ~~em~~p~~~~~ 343 (530)
.+.+++.++.++
T Consensus 238 sSYL~k~~~l~~ 249 (439)
T COG0733 238 SSYLSKKSDLVS 249 (439)
T ss_pred HhhcCcccchhh
Confidence 778888888654
No 93
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.10 E-value=4.8 Score=41.25 Aligned_cols=73 Identities=16% Similarity=0.398 Sum_probs=59.7
Q ss_pred CCHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhh
Q psy17648 192 NSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHV 268 (530)
Q Consensus 192 ~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 268 (530)
.-..+++++.||+ +|..+..+.+.+.|+.+++......++.+..+++. .+.+.|.++..++.+.++.. .++.+
T Consensus 255 ~~l~~~a~~~~G~-~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~k--~~y~~~v~~~~l~s~~ia~~-Gl~~I 327 (378)
T TIGR00796 255 QILSAYSQHLFGS-LGSFLLGLIITLACLTTAVGLTTACSEYFHKLVPK--LSYKTWVIVFTLFSFIVANL-GLTQI 327 (378)
T ss_pred HHHHHHHHHHcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHHHh-CHHHH
Confidence 3678999999999 79999999999999999999999999999999873 77888887776666655543 34443
No 94
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=91.87 E-value=15 Score=36.93 Aligned_cols=139 Identities=9% Similarity=0.029 Sum_probs=79.8
Q ss_pred CCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHH-HHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 121 HKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYIC-CYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 121 ~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~-~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
|+.+-+--.+....+-+|+.- ++=|-+-...|+ +.+++..+-+-. +.+.-.+.+-.....+|.+ ..+..|+-
T Consensus 39 Rsmgg~VlAmt~~aTYisaSSFigGpgaayk~Gl-gwvlLa~iqvp~~~l~lgvlgkk~~~~ar~~n-----AltI~D~l 112 (473)
T COG4145 39 RSMGGIVLAMTFTATYISASSFIGGPGAAYKYGL-GWVLLAMIQVPTVWLALGVLGKKFAILAREYN-----ALTINDLL 112 (473)
T ss_pred CcccceehhhHHHHHHHHHhhhcCCCcHHHHhch-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhC-----CeeHHHHH
Confidence 555556666666666666644 455666555443 111221111111 2222233333333222222 44778887
Q ss_pred HHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhh
Q psy17648 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHV 268 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 268 (530)
++=+-.+.-.++..+...+...+..++-.+-.+..++... +.+...-.++++..+..-+....++..
T Consensus 113 ~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~---gidY~tgL~ifa~~V~iYt~fGGFRAv 179 (473)
T COG4145 113 FARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL---GIDYTTGLLIFAVSVAIYTAFGGFRAV 179 (473)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---CCCchhhHHHHHHHHHHHHhhcceeee
Confidence 7655433567777788888888888888888888888776 445666666666666666666555554
No 95
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=90.80 E-value=1.9 Score=44.65 Aligned_cols=67 Identities=24% Similarity=0.467 Sum_probs=59.0
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhc
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFL 262 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 262 (530)
-..+++++.||+ .|..+..+.+.+.|+.+++.-....+|+.++.++ ..+.+.|.+++.++.+.++..
T Consensus 262 lL~~i~~~~~G~-~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~--kisY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 262 LLSQIANHLFGS-AGQILLGIIVFLACLTTAIGLISACAEYFSELFP--KISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHcCh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--ccChHHHHHHHHHHHHHHHHh
Confidence 578889999999 7999999999999999999999999999999998 678888888877777666654
No 96
>PRK15015 carbon starvation protein A; Provisional
Probab=89.54 E-value=8.9 Score=41.58 Aligned_cols=101 Identities=13% Similarity=0.110 Sum_probs=65.0
Q ss_pred HHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHH-HHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhhCc
Q psy17648 126 WQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYI-CCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECFGP 204 (530)
Q Consensus 126 ~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~-~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~G~ 204 (530)
+-.+-+=..++-|+|-+.=|..-.+.||+.-.+.+++|.+ ..-.-.+..... .. ++.|+ |..+++++..|+
T Consensus 86 ~VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~-S~-R~~Gr------Sig~ia~~~iG~ 157 (701)
T PRK15015 86 KVLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFV-ST-RRDGR------SLGELVKEEMGP 157 (701)
T ss_pred cchhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheee-ee-cCCCc------cHHHHHHHHhhH
Confidence 3444466677889999999988779999943444444433 221111111111 11 22233 999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy17648 205 VWGARAVNLAQMIELLMTCILYVVVCGDLMV 235 (530)
Q Consensus 205 ~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~ 235 (530)
+ ++.+..+..++.+.....++.......+.
T Consensus 158 ~-~~~lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 158 T-AGVIALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5 88888888877777777777666666653
No 97
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=84.99 E-value=52 Score=34.21 Aligned_cols=289 Identities=13% Similarity=0.053 Sum_probs=140.3
Q ss_pred CCCCccHHHHHHHHHhhhhccccc-hhHHHHHhccHHHHHHHHH---HHHHHHHHHHHHHHhhhhcCcCCCCccccCCCH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIV-SLPFAVLRGGYWAIFAMIG---IAYICCYTGKILVECLYEIDPNTGQRVRVRNSY 194 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL-~lP~a~~~~G~~gii~~i~---~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y 194 (530)
.++..|.+++++.-+.+-+|+|=+ +...|++-.|.-.+.++=+ +|..+-|.=..|.+-|++-+++ |+ .+..=
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~-G~---~~GGP 134 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKD-GE---YRGGP 134 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCC-CC---CcCCh
Confidence 457789999999999999999964 5778888888633444433 3334445545555555544321 11 12234
Q ss_pred HHHHHHhhCchhHHHHHHHHHHHHHH-HHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHH
Q psy17648 195 VSIASECFGPVWGARAVNLAQMIELL-MTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSF 273 (530)
Q Consensus 195 ~~l~~~~~G~~~g~~~~~i~~~i~~~-~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 273 (530)
.++.++-+|.||...++.+...+... .....-.-.+.+.++..++ .+... .-+...++.-+.....++..+.++.
T Consensus 135 ~yYi~kGl~~r~l~v~FA~~li~afg~i~n~vQ~NsIa~a~~~af~---~~~~~-~gi~la~l~~~VI~GGi~rIa~v~~ 210 (452)
T COG1115 135 AYYIEKGLGMRWLAVLFAFALIAAFGFIGNGVQSNSIASALANAFG---IPPLV-TGIVLALLVALVIFGGIKRIAKVSS 210 (452)
T ss_pred HHHHHhhcCCcHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHhcC---CcHHH-HHHHHHHHHHHHHHcchHHHHHHHH
Confidence 56677788887877666644433322 2444444455556655553 22222 2222223333444456666666655
Q ss_pred HHHHH--HHHH--HHhheeeeeeecCccCCccccccccc----cc---------hhHHHHHhhhhcc-cceeccccccc-
Q psy17648 274 WCTMS--HIVI--NVVILGYCLLQIGDWGWGKVKWTLDM----EN---------FPISLGVIVFSYT-SQIFLPTLEGN- 334 (530)
Q Consensus 274 ~~~~~--~~~~--~~iii~~~~~~~~~~~~~~~~~~~~~----~~---------~~~a~~~~~faf~-~~~~i~~i~~e- 334 (530)
.-+-. .+.. .++++..-+.+.|..=..-....+++ .+ +...+.-.+||-+ |....|...++
T Consensus 211 ~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA 290 (452)
T COG1115 211 KVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAA 290 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhh
Confidence 44311 1111 12222222223332100000011111 11 2244455778776 46666666554
Q ss_pred -ccCccchhhHHHHHH-----HHHHHHHHHHHhHhhhhccCCchh-----hhhccCCCchHHHHHHHHHHHHHHHhccch
Q psy17648 335 -LIDRSKFDWMLDWSH-----IAAAIFKSMFGYLCFLTFQNDTQQ-----VITNNFDSAWFRGFVNFFLVVKALLSYPLP 403 (530)
Q Consensus 335 -m~~p~~~~~~i~~s~-----~~~~~~Y~~~g~~gy~~fG~~~~~-----~il~~~~~~~~~~i~~~~~~i~~~~s~pl~ 403 (530)
.+||.|--.+-..+. ++|+..=+++=+.+-+..++..++ ..+.+.-.++-...+.+.+.+-.++|.-..
T Consensus 291 ~~~hPv~QGlv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~ 370 (452)
T COG1115 291 KTDHPVKQGLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGAALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGW 370 (452)
T ss_pred cCCCcHHHhHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHH
Confidence 457766433333333 333322222222232223331122 222222222445555555555556666666
Q ss_pred hhhHHHHHHHhh
Q psy17648 404 YYAACELLETNY 415 (530)
Q Consensus 404 ~~~~~~~~~~~~ 415 (530)
.|-..+.++-+.
T Consensus 371 yyyge~~~~fl~ 382 (452)
T COG1115 371 YYYGEKNIEFLF 382 (452)
T ss_pred HHHHHHHHHHHh
Confidence 666666665544
No 98
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=83.07 E-value=20 Score=37.43 Aligned_cols=67 Identities=18% Similarity=0.327 Sum_probs=57.1
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcc
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLK 263 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 263 (530)
-.....++.+|+ +|..+..+.+++.|+.+++.-....++.+++.++ .+.+.|.++..++.++++...
T Consensus 266 il~~~~~~~~G~-~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---isY~~~v~i~~l~S~~lSn~G 332 (439)
T PRK15433 266 ILHAYVQHTFGG-GGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---LSYRTLVFILGGFSMVVSNLG 332 (439)
T ss_pred HHHHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHHHHHhH
Confidence 455667789999 8999999999999999999999999999998875 678888888888877777653
No 99
>KOG1289|consensus
Probab=81.41 E-value=23 Score=37.59 Aligned_cols=47 Identities=21% Similarity=0.195 Sum_probs=38.0
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCC
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD 240 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~ 240 (530)
...++-....|+| +..++..+.++..+..+++-++..+.....+-.+
T Consensus 326 p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaRD 372 (550)
T KOG1289|consen 326 PIVQIYYQALGKK-GAVFLLSLIIIALFFMGISSLTASSRLVYAFARD 372 (550)
T ss_pred hHHHHHHHhcCCC-ceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhcc
Confidence 6888888899997 5688888888888889999998888887766433
No 100
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=80.65 E-value=60 Score=33.45 Aligned_cols=67 Identities=16% Similarity=0.449 Sum_probs=58.5
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhc
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFL 262 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 262 (530)
-..+..++.||+ .|..+...++.+.|..+++.-....+|+..+.+| ..+.+.|..++.+..+.++..
T Consensus 264 IL~~~s~~~fG~-~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p--~~SY~~~v~if~i~sflvan~ 330 (431)
T COG1114 264 ILSAYSQHLFGS-YGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP--KLSYKTWVIIFTLISFLVANL 330 (431)
T ss_pred HHHHHHHHHhch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHHHHHHh
Confidence 578888999999 7999999999999999999999999999999998 678888888877766665543
No 101
>KOG3659|consensus
Probab=78.31 E-value=1e+02 Score=33.23 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHhhhhcccc-chhHHH-HHhccH---HH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 123 INEWQAAWNVTNAIQGMFI-VSLPFA-VLRGGY---WA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 123 ~s~~~~~~~l~~~~iG~Gi-L~lP~a-~~~~G~---~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
.+-+......++..++.|= .-.||- +++.|. +. .+++++.|+=..|-=..|.+-.+. | ...-+..
T Consensus 82 ~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~-----g----~~gvw~r 152 (629)
T KOG3659|consen 82 GSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQ-----G----CIGVWRR 152 (629)
T ss_pred hhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcc-----c----chhHHHH
Confidence 3446677778888888875 568986 777775 23 666666666666655555554322 1 1334556
Q ss_pred HHHHhhCchhHHHHHHHHHHHHH
Q psy17648 197 IASECFGPVWGARAVNLAQMIEL 219 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~ 219 (530)
++- .+|. .|.-++-++++...
T Consensus 153 i~P-~l~G-igy~i~~i~~~~~~ 173 (629)
T KOG3659|consen 153 IAP-ALKG-IGYAICLIAFFVGL 173 (629)
T ss_pred hCH-HhcC-CchhhhHHHHHHHH
Confidence 666 3443 35555555554443
No 102
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=72.17 E-value=1.5e+02 Score=31.99 Aligned_cols=88 Identities=16% Similarity=0.147 Sum_probs=43.1
Q ss_pred HHhhhhcccchhhhHHHHHHHHHHHHHHHhheeeeeeecCc-cCCcc-----ccccccccchhHHHHHhhhhcc-cceec
Q psy17648 256 LIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGD-WGWGK-----VKWTLDMENFPISLGVIVFSYT-SQIFL 328 (530)
Q Consensus 256 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~~~~-~~~~~-----~~~~~~~~~~~~a~~~~~faf~-~~~~i 328 (530)
+.-++..|.++...++.......-.+.+++++++++...+. .|.+. .....+..-+..|++..+|+.+ |...+
T Consensus 190 iv~~~i~kGi~~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~ 269 (523)
T PF00209_consen 190 IVFFGIWKGIESIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIM 269 (523)
T ss_dssp HHTTTTTTTHHHHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHH
T ss_pred HHHHheEeccccccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceE
Confidence 33455667888877766654432222222222333211110 11110 0001122234679999999998 56777
Q ss_pred ccccccccCccchhh
Q psy17648 329 PTLEGNLIDRSKFDW 343 (530)
Q Consensus 329 ~~i~~em~~p~~~~~ 343 (530)
...-+.+|+.++..+
T Consensus 270 it~~Sy~~~~~n~~~ 284 (523)
T PF00209_consen 270 ITYGSYNKFKNNIFR 284 (523)
T ss_dssp HHHHTTS-TTS-SHH
T ss_pred EEEcCcCCCCccccc
Confidence 777777877777554
No 103
>KOG2466|consensus
Probab=71.97 E-value=1.4e+02 Score=31.56 Aligned_cols=37 Identities=14% Similarity=-0.021 Sum_probs=25.7
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccchhHHHHHhccH
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGY 153 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~ 153 (530)
++.+|.-++++-+..=....++.+..-+....-+.|+
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGL 86 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGL 86 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccC
Confidence 3456778888877777777777777666666666664
No 104
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=70.76 E-value=36 Score=30.31 Aligned_cols=32 Identities=13% Similarity=0.300 Sum_probs=23.0
Q ss_pred cccchhhhHHHHHHHHHHHHHHHhheeeeeee
Q psy17648 262 LKSLHHVSMLSFWCTMSHIVINVVILGYCLLQ 293 (530)
Q Consensus 262 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~~~~ 293 (530)
++.++.+.+=.++..+|..+.-.+.++|++..
T Consensus 123 ~~~~~~l~~nTiiT~~CiyiLyGlFIGYSIsf 154 (173)
T PF11085_consen 123 IKPVTELDWNTIITTLCIYILYGLFIGYSISF 154 (173)
T ss_pred ChhhhhCchhHHHHHHHHHHHHHHHhceeehh
Confidence 46677777777777777777767777887753
No 105
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=51.94 E-value=2.9e+02 Score=28.60 Aligned_cols=117 Identities=12% Similarity=0.088 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh---ccCCch-hhhhccCCCch----HHHHHHHHHHHHHHHhccchhhhHHHHHHHhhc
Q psy17648 345 LDWSHIAAAIFKSMFGYLCFLT---FQNDTQ-QVITNNFDSAW----FRGFVNFFLVVKALLSYPLPYYAACELLETNYF 416 (530)
Q Consensus 345 i~~s~~~~~~~Y~~~g~~gy~~---fG~~~~-~~il~~~~~~~----~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~ 416 (530)
-.++-..-..+|...+..|-.. .++... +.++....+.. -..+.-+.+.++++++-....-.+.+.+.+.+-
T Consensus 230 glIa~i~La~iY~~L~ylGa~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~iv~lACLTTaiGLi~a~aefF~~~~p 309 (431)
T COG1114 230 GLIAAILLALIYLSLFYLGATSASAAGLAANGGQILSAYSQHLFGSYGSILLGLIVFLACLTTAVGLIVACAEFFSKLVP 309 (431)
T ss_pred HHHHHHHHHHHHHHHHHhccchHhhcccccchHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3344455566788777777432 122222 23443332221 234455667788888888888888888876652
Q ss_pred cCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHh
Q psy17648 417 KGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLK 484 (530)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~ 484 (530)
+.. .....++..+.++++|.. .++.++.+ ....+.++.|...-+.
T Consensus 310 -----~~S------------Y~~~v~if~i~sflvan~--GL~~Ii~i----svPvL~~iYPiaI~Lv 354 (431)
T COG1114 310 -----KLS------------YKTWVIIFTLISFLVANL--GLEQIIKI----SVPVLTAIYPIAIALV 354 (431)
T ss_pred -----ccc------------HHHHHHHHHHHHHHHHHh--hHHHHHHH----HHHHHHHHhHHHHHHH
Confidence 110 023345556666777632 46666655 3456777778766553
No 106
>PLN00151 potassium transporter; Provisional
Probab=50.47 E-value=4.3e+02 Score=30.07 Aligned_cols=15 Identities=27% Similarity=0.155 Sum_probs=7.4
Q ss_pred HHHHHhhhhccccee
Q psy17648 313 ISLGVIVFSYTSQIF 327 (530)
Q Consensus 313 ~a~~~~~faf~~~~~ 327 (530)
.++|.++.+..|.+.
T Consensus 348 ~~LGgVvLciTGaEA 362 (852)
T PLN00151 348 SALGGCVLCATGSEA 362 (852)
T ss_pred EEecceeeeeccchh
Confidence 344555555555443
No 107
>KOG2736|consensus
Probab=48.33 E-value=73 Score=32.08 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=30.8
Q ss_pred HHHHHHHHHhhhhccccc-hhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17648 125 EWQAAWNVTNAIQGMFIV-SLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECL 177 (530)
Q Consensus 125 ~~~~~~~l~~~~iG~GiL-~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~ 177 (530)
+...+..-+...+|-++- -+=..++.+ +-.+-.-+.+|.+++++.+++++-.
T Consensus 343 ~~TviAC~vaIL~GL~~TL~llsv~~kA-LPALPisI~~G~iFYF~t~~l~epF 395 (406)
T KOG2736|consen 343 LNTVIACFVAILIGLCLTLLLLSVFKKA-LPALPISITFGLIFYFSTRLLVEPF 395 (406)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhc-CcCCchHHHHHHHHHHHHHHHHHHH
Confidence 555666666777777762 222334443 3234445667778888888777643
No 108
>KOG4812|consensus
Probab=46.73 E-value=49 Score=31.12 Aligned_cols=81 Identities=15% Similarity=0.256 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHH---------HhHhhhhHHHhhhhhhHHhhcCC--CCch---hhhhhhhhhHHHHH
Q psy17648 441 RVAVVLFTIMMAVFIPHFAILMGFI---------GSFTGTMLSFIWPCYFHLKLKGG--SLSI---QSVAFDCFVIFLGC 506 (530)
Q Consensus 441 ~~~~~~~~~~ia~~ip~~~~li~l~---------Ga~~~~~~~~i~P~l~~l~~~~~--~~~~---~~~~~~~~~i~~g~ 506 (530)
+-+..+.++++|.+++.++.++.++ |+.++.-++++= |..+-|. +... ..+|+-|+++++|+
T Consensus 159 nd~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ 234 (262)
T KOG4812|consen 159 NDGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGL 234 (262)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHH
Confidence 4455556666666666666666553 455554444433 3333221 1111 13678899999999
Q ss_pred HHHHHHHHH--HHHHHHHHhh
Q psy17648 507 LFGIIGVYD--SGSAMIQAFE 525 (530)
Q Consensus 507 ~~~v~g~y~--si~~ii~~~~ 525 (530)
++.+-+++. .|+.+-+.++
T Consensus 235 ll~lr~~i~YikVrrm~~~~s 255 (262)
T KOG4812|consen 235 LLFLRGFINYIKVRRMEEKYS 255 (262)
T ss_pred HHHHHHHHhHHHHhhHHHHHh
Confidence 999888764 4555555544
No 109
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=45.34 E-value=3.9e+02 Score=28.08 Aligned_cols=22 Identities=36% Similarity=0.742 Sum_probs=14.1
Q ss_pred ccchhhhHHHHHHHhhccCCCC
Q psy17648 400 YPLPYYAACELLETNYFKGGDS 421 (530)
Q Consensus 400 ~pl~~~~~~~~~~~~~~~~~~~ 421 (530)
..+..+..++.+.+.+...++.
T Consensus 330 ~~l~~~~l~~ll~r~fya~~~~ 351 (451)
T PF03023_consen 330 LGLPFYALNDLLSRVFYALGDT 351 (451)
T ss_pred HHhHHHHHHHHHHHHHHHccCc
Confidence 3455667778887777655543
No 110
>PRK09598 lipid A phosphoethanolamine transferase; Reviewed
Probab=45.19 E-value=1.8e+02 Score=31.30 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=18.8
Q ss_pred hHhhhhHHHhhhhhhHHhhcCCCCchhhhh
Q psy17648 467 SFTGTMLSFIWPCYFHLKLKGGSLSIQSVA 496 (530)
Q Consensus 467 a~~~~~~~~i~P~l~~l~~~~~~~~~~~~~ 496 (530)
.+.+..+..++|+++.+|.+-+..++...+
T Consensus 123 ~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~ 152 (522)
T PRK09598 123 LFIYIVVLGVLPGYIIYKIPLKNSSKKAPF 152 (522)
T ss_pred HHHHHHHHHHHHHHHHHHhccccccHHHHH
Confidence 344566667899999888765333443344
No 111
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=44.93 E-value=3.8e+02 Score=27.88 Aligned_cols=49 Identities=24% Similarity=0.444 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHhhcc-cHHHHHHHHHhHhhhhHHHhhhhhhHHhhcC
Q psy17648 439 MFRVAVVLFTIMMAVFIP-HFAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487 (530)
Q Consensus 439 ~~~~~~~~~~~~ia~~ip-~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~ 487 (530)
.........+.+.++..| .+....+.+|++...+.+-++|.+++++-++
T Consensus 326 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~ 375 (415)
T COG0814 326 KTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIKPRK 375 (415)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455566666666667 6888888899999999999999999997754
No 112
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=43.88 E-value=3.6e+02 Score=27.24 Aligned_cols=28 Identities=11% Similarity=-0.037 Sum_probs=22.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhHhhhhccC
Q psy17648 342 DWMLDWSHIAAAIFKSMFGYLCFLTFQN 369 (530)
Q Consensus 342 ~~~i~~s~~~~~~~Y~~~g~~gy~~fG~ 369 (530)
++++..+...+.-.-+++...||.....
T Consensus 47 ~~al~~tll~alp~pl~~~~~g~~L~~~ 74 (340)
T PF12794_consen 47 PRALLLTLLLALPLPLLLLAIGYLLQFA 74 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5788888888888888888888876544
No 113
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=40.57 E-value=4.2e+02 Score=27.78 Aligned_cols=124 Identities=19% Similarity=0.120 Sum_probs=71.3
Q ss_pred cHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcC--CCCccccCCCHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHH
Q psy17648 152 GYWA-IFAMIGIAYICCYTGKILVECLYEIDPN--TGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVV 228 (530)
Q Consensus 152 G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~--~g~~~~~~~~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i 228 (530)
|++. +...+=.-++|..|+.+++..-...... +|- . =-..--+..+|. ||..++.+.+++..+.+.+.+..
T Consensus 299 Glv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~----~-ltq~A~~~~~g~-~G~~fv~i~l~lFafTTIlg~yy 372 (452)
T COG1115 299 GLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGA----A-LTQAAFSSHLGS-WGSYFVAIALFLFAFTTILGWYY 372 (452)
T ss_pred hHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchH----H-HHHHHHHHhcCc-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 6764 3333335566777766555432211111 111 0 112223336788 89999999999999999999999
Q ss_pred HHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHHHHH
Q psy17648 229 VCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVIN 283 (530)
Q Consensus 229 ~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~ 283 (530)
....+++-+.++. .-...+. +..+...++....+++...-++.+....+.+..
T Consensus 373 yge~~~~fl~~~k-~~~~~~r-~~~l~~v~~Ga~~~l~~vW~laD~~~glMai~N 425 (452)
T COG1115 373 YGEKNIEFLFGSK-KAILLYR-LIVLAMVFLGAVLSLDLVWNLADLFMGLMAIPN 425 (452)
T ss_pred HHHHHHHHHhCCc-hHHHHHH-HHHHHHHHHhccccHHHHHHHHHHhchHHHHHH
Confidence 9888888777432 1111111 223344455556667776666666655544443
No 114
>KOG2466|consensus
Probab=39.62 E-value=1.5e+02 Score=31.35 Aligned_cols=157 Identities=16% Similarity=0.179 Sum_probs=88.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHH-HhhhcccCCCC-ccch-hHHHHHHHHHHHhhhhcc-cchhhhHHHHHHHHH
Q psy17648 203 GPVWGARAVNLAQMIELLMTCILYVVVC-GDLMVGSFPDG-AIDT-RSWMMLIGIFLIPLGFLK-SLHHVSMLSFWCTMS 278 (530)
Q Consensus 203 G~~~g~~~~~i~~~i~~~~~~~~y~i~~-~~~l~~~~~~~-~~~~-~~~~~i~~~~~~pl~~~~-~l~~l~~~s~~~~~~ 278 (530)
|.|.|.+++.+...+.+++..++...+. +.-+..++|.. ...+ .....+.+.+++|=-+++ +=++++.++..+++.
T Consensus 339 G~RAgvFfi~~~f~laql~~NISan~vaagnDl~~L~PkyinIrRG~~~~a~ia~a~~PWnll~SSs~F~t~LssysvfL 418 (572)
T KOG2466|consen 339 GARAGVFFIGFGFALAQLGTNISANSVAAGNDLSALLPKYINIRRGALICAIIAWAICPWNLLSSSSKFLTALSSYSVFL 418 (572)
T ss_pred ccchhhhHHHHHHHHHHHhcchhccccccchhhHhhCcceEEecccHHHHHHHHHHhCchHHhccccHHHHHHHHHHHHH
Confidence 3346778888888888877777666554 45566667653 2222 223334467778877766 556667777666655
Q ss_pred HHHHHHhheeeeeeecCccCCccc-------cccccccchhHHHHHhhhhcccceecccccccccCccchh--------h
Q psy17648 279 HIVINVVILGYCLLQIGDWGWGKV-------KWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFD--------W 343 (530)
Q Consensus 279 ~~~~~~iii~~~~~~~~~~~~~~~-------~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~~~--------~ 343 (530)
.-++-+++.-+.+.+.......+. .+.+ ..++ +-=..+.|-.++.+++|-+..|..+..+.+ -
T Consensus 419 spiagViiaDyF~iRk~~~~i~~~y~~~~g~yY~~-~~G~-NwRA~vA~vcG~~P~lpG~a~~V~~~~~v~~G~~~~yy~ 496 (572)
T KOG2466|consen 419 SPIAGVIIADYFLIRKGYYKITHLYSLSKGSYYYF-KKGI-NWRAFVAYVCGMAPNLPGFAGSVGADIKVPDGAVKLYYL 496 (572)
T ss_pred hhccceEeehhheeecceeeeeeeeecCCCceeee-ecCc-cHHHHHHHHhccccCCcchhhhcCcccccccceEEEEec
Confidence 444434333333333222222111 0111 0111 112235566677899999988887543333 3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy17648 344 MLDWSHIAAAIFKSMFGY 361 (530)
Q Consensus 344 ~i~~s~~~~~~~Y~~~g~ 361 (530)
....++.+..+.|..+..
T Consensus 497 ~yf~sf~isf~vYwiLc~ 514 (572)
T KOG2466|consen 497 DYFFSFLISFLVYWILCL 514 (572)
T ss_pred hHHHHHHHHHHHHHHHHh
Confidence 567788888888876543
No 115
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=39.03 E-value=31 Score=23.35 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=21.3
Q ss_pred hHHHHHHHHHHHHHHHHHhHhhhhccCCc
Q psy17648 343 WMLDWSHIAAAIFKSMFGYLCFLTFQNDT 371 (530)
Q Consensus 343 ~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~ 371 (530)
.+...++.+..++..+.|...|.+||...
T Consensus 6 ~A~~~~i~i~~lL~~~TgyaiYtaFGppS 34 (46)
T PRK13183 6 PALSLAITILAILLALTGFGIYTAFGPPS 34 (46)
T ss_pred hhHHHHHHHHHHHHHHhhheeeeccCCcc
Confidence 35556667777777788888888999753
No 116
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=38.99 E-value=65 Score=23.68 Aligned_cols=25 Identities=16% Similarity=0.186 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCC
Q psy17648 505 GCLFGIIGVYDSGSAMIQAFEIGLP 529 (530)
Q Consensus 505 g~~~~v~g~y~si~~ii~~~~~~~p 529 (530)
.++..+.|.|.+-+.+-+.+++++|
T Consensus 7 li~G~~~Gff~ar~~~~k~l~~NPp 31 (64)
T PF03672_consen 7 LIVGAVIGFFIARKYMEKQLKENPP 31 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 3444467888899999999999988
No 117
>PF08019 DUF1705: Domain of unknown function (DUF1705); InterPro: IPR012549 Some members of this family are putative bacterial membrane proteins. This domain is found immediately N-terminal to the sulphatase domain in many sulphatases.; GO: 0016021 integral to membrane
Probab=38.73 E-value=2e+02 Score=25.30 Aligned_cols=26 Identities=12% Similarity=0.069 Sum_probs=15.6
Q ss_pred HhhhhHHHhhhhhhHHhhcCCCCchh
Q psy17648 468 FTGTMLSFIWPCYFHLKLKGGSLSIQ 493 (530)
Q Consensus 468 ~~~~~~~~i~P~l~~l~~~~~~~~~~ 493 (530)
+.+..+..++|+++.++.+-++.+++
T Consensus 69 ~~~~l~~~vlP~~~l~~~~i~~~~~~ 94 (156)
T PF08019_consen 69 ILWLLLLGVLPALLLWRVRIKKRSWK 94 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccHH
Confidence 44455555688888777654444443
No 118
>PRK00523 hypothetical protein; Provisional
Probab=38.59 E-value=86 Score=23.59 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy17648 503 FLGCLFGIIGVYDSGSAMIQAFEIGLP 529 (530)
Q Consensus 503 ~~g~~~~v~g~y~si~~ii~~~~~~~p 529 (530)
+..++..+.|.|.+-+.+-+.+++++|
T Consensus 13 ~~li~G~~~Gffiark~~~k~l~~NPp 39 (72)
T PRK00523 13 PLLIVGGIIGYFVSKKMFKKQIRENPP 39 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCcC
Confidence 334445567788888888889999988
No 119
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.25 E-value=77 Score=23.66 Aligned_cols=30 Identities=23% Similarity=0.239 Sum_probs=21.7
Q ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHhhcCCC
Q psy17648 500 FVIFLGCL-FGIIGVYDSGSAMIQAFEIGLP 529 (530)
Q Consensus 500 ~~i~~g~~-~~v~g~y~si~~ii~~~~~~~p 529 (530)
+.++++++ ..+.|.+-+-+.+-+.+++++|
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPp 38 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPP 38 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence 33444443 3456788899999999999998
No 120
>PRK01844 hypothetical protein; Provisional
Probab=37.89 E-value=83 Score=23.69 Aligned_cols=27 Identities=11% Similarity=0.069 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCC
Q psy17648 503 FLGCLFGIIGVYDSGSAMIQAFEIGLP 529 (530)
Q Consensus 503 ~~g~~~~v~g~y~si~~ii~~~~~~~p 529 (530)
+..++..+.|.|.+-+.+-+.+++++|
T Consensus 12 ~~li~G~~~Gff~ark~~~k~lk~NPp 38 (72)
T PRK01844 12 VALVAGVALGFFIARKYMMNYLQKNPP 38 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 334444566788888888889999988
No 121
>COG5264 VTC1 Vacuolar transporter chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=35.69 E-value=1.5e+02 Score=24.79 Aligned_cols=72 Identities=14% Similarity=0.190 Sum_probs=39.3
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
++|+-..|-.+..+++. +|.+++.... +.|.++ .+..++.-+...|+..+..+-......++++ .|.|
T Consensus 31 nERTfl~wl~~~vllg~-l~~~l~n~~~---~~g~~~a~vftivaif~~~ya~~lY~kRa~~Ir~R~~~------pyDD- 99 (126)
T COG5264 31 NERTFLSWLSVTVLLGG-LGFALYNSGD---RLGMISAYVFTIVAIFCGFYALMLYLKRAVNIRQRSAG------PYDD- 99 (126)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHhhHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC------CCcc-
Confidence 44554455556666654 6777777766 556553 3444444444456665555444444444443 5554
Q ss_pred HHHhhCc
Q psy17648 198 ASECFGP 204 (530)
Q Consensus 198 ~~~~~G~ 204 (530)
-+||
T Consensus 100 ---~~GP 103 (126)
T COG5264 100 ---RLGP 103 (126)
T ss_pred ---ccCC
Confidence 4677
No 122
>PLN02680 carbon-monoxide oxygenase
Probab=35.23 E-value=1.5e+02 Score=28.05 Aligned_cols=69 Identities=19% Similarity=0.309 Sum_probs=41.2
Q ss_pred ccCccchhhHHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhccCCC--chHHHHHHHHHHHHHHHhccchhhh
Q psy17648 335 LIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDS--AWFRGFVNFFLVVKALLSYPLPYYA 406 (530)
Q Consensus 335 m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~--~~~~~i~~~~~~i~~~~s~pl~~~~ 406 (530)
.+.+++.+|.+....-...++..++|+.....+-++. .+ .|+-+ +|+....-+++.++.+..+....+|
T Consensus 72 ~~~~k~~~K~iH~~L~~lA~~l~vvGl~avfk~hn~~--~~-~nfySlHSWlGl~t~iL~~lQ~~~Gf~~f~~P 142 (232)
T PLN02680 72 VPGTKNLKKLVHLTLQFLAFCLSLIGVWAALKFHNEK--GI-DNFYSLHSWLGLACLFLFSLQWAAGFVTFWYP 142 (232)
T ss_pred ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--Cc-cccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4445556677888887777788888886655554432 22 23321 2556666666777776665544444
No 123
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=34.71 E-value=5.7e+02 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=31.5
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVG 236 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~ 236 (530)
.+.++.+..+|.+++..++.+...+..++...+.+...+..+..
T Consensus 290 p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~sR~l~a 333 (482)
T TIGR00907 290 PIAQIFYNALGNKAGAIFLLCLILVTSFFCAITCMTANSRMIYA 333 (482)
T ss_pred hHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888866666677777777777777777776666543
No 124
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=34.48 E-value=6.2e+02 Score=27.33 Aligned_cols=102 Identities=18% Similarity=0.173 Sum_probs=63.1
Q ss_pred cHHHHHHHHHhhhhccccchhHHHHHhccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHHHHhh
Q psy17648 124 NEWQAAWNVTNAIQGMFIVSLPFAVLRGGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIASECF 202 (530)
Q Consensus 124 s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~~~~~ 202 (530)
+.+..+-+=..++-|+|-+.=|.--++.||. +.+.+++-.++..---.+++.... -++.|+ |..+++++.+
T Consensus 53 nk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~S--vR~~G~------Si~~ia~~~l 124 (575)
T COG1966 53 NKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLS--VRHGGK------SIGEIAGKYL 124 (575)
T ss_pred CchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeee--eccCCc------cHHHHHHHHh
Confidence 3355555666677899999999988999987 455444433333222112221110 122233 9999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17648 203 GPVWGARAVNLAQMIELLMTCILYVVVCGDLM 234 (530)
Q Consensus 203 G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l 234 (530)
|++ .+.+..+..++.+.....++.......+
T Consensus 125 G~~-a~~~~~~~~l~iliiv~Avfa~vv~~~l 155 (575)
T COG1966 125 GRT-AKVFFLLLALILLILVGAVFAAVIAKLL 155 (575)
T ss_pred hhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 995 7777777777766666655555554444
No 125
>CHL00020 psbN photosystem II protein N
Probab=33.26 E-value=36 Score=22.71 Aligned_cols=28 Identities=14% Similarity=0.245 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhccCCc
Q psy17648 344 MLDWSHIAAAIFKSMFGYLCFLTFQNDT 371 (530)
Q Consensus 344 ~i~~s~~~~~~~Y~~~g~~gy~~fG~~~ 371 (530)
+...++.+..++..+.|...|.+||...
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGppS 31 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQPS 31 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCch
Confidence 4455666677777777888888999753
No 126
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=32.64 E-value=1.4e+02 Score=31.06 Aligned_cols=85 Identities=18% Similarity=0.176 Sum_probs=57.2
Q ss_pred HhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHH
Q psy17648 200 ECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSH 279 (530)
Q Consensus 200 ~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 279 (530)
..+|+ |+.+++.+++++.-+.+.+.+......++..++.+. .....+.++. ++..++..+.+++.+..++.+.....
T Consensus 301 ~~~g~-~g~~~v~i~l~lFafTTilg~~~yge~~~~yl~~~~-~~~~~~ri~~-i~~~~~G~~~~~~~vW~~~Di~~~lm 377 (416)
T PF01235_consen 301 TVLGS-WGPYFVAIALFLFAFTTILGWYYYGEKCAEYLFGGK-KAIWIYRILF-IAMVFIGAVIDLDLVWDLADIANGLM 377 (416)
T ss_pred Hhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-eEEEeeeehh-hhhhhhhhcccchhHHHHHHHHHHHH
Confidence 35677 899999999999999999999999999988888332 1122222222 23334444456777777777777666
Q ss_pred HHHHHhhe
Q psy17648 280 IVINVVIL 287 (530)
Q Consensus 280 ~~~~~iii 287 (530)
.+..++.+
T Consensus 378 ai~Nlial 385 (416)
T PF01235_consen 378 AIPNLIAL 385 (416)
T ss_pred HHHHHHHH
Confidence 66555443
No 127
>COG3817 Predicted membrane protein [Function unknown]
Probab=32.58 E-value=4.1e+02 Score=25.52 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=24.4
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17648 495 VAFDCFVIFLGCLFGIIGVYDSGSAMIQAFE 525 (530)
Q Consensus 495 ~~~~~~~i~~g~~~~v~g~y~si~~ii~~~~ 525 (530)
-+.+=.+-.+|.+....|+-.++-.+++.+-
T Consensus 168 ~iLPQ~LaaLG~vFa~aGvG~~ia~L~~~~i 198 (313)
T COG3817 168 AILPQMLAALGAVFASAGVGDVIAHLISEII 198 (313)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHHHHHHHc
Confidence 3566677788999988999889888888663
No 128
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=32.08 E-value=44 Score=22.39 Aligned_cols=26 Identities=15% Similarity=0.287 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhccCC
Q psy17648 345 LDWSHIAAAIFKSMFGYLCFLTFQND 370 (530)
Q Consensus 345 i~~s~~~~~~~Y~~~g~~gy~~fG~~ 370 (530)
...++.+..++..++|...|.+||..
T Consensus 5 ~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 5 TVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 34556666677777888888999865
No 129
>PF07954 DUF1689: Protein of unknown function (DUF1689) ; InterPro: IPR012470 Family of fungal proteins with unknown function. A member of this family has been found to localise in the mitochondria [].
Probab=31.84 E-value=1.6e+02 Score=25.80 Aligned_cols=57 Identities=18% Similarity=0.221 Sum_probs=36.6
Q ss_pred HhHhhhhHHHhhhhhhHHhhcC--CCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy17648 466 GSFTGTMLSFIWPCYFHLKLKG--GSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQA 523 (530)
Q Consensus 466 Ga~~~~~~~~i~P~l~~l~~~~--~~~~~~~~~~~~~~i~~g~~~~v~g~y~si~~ii~~ 523 (530)
++-.+...+|..|.+.+..-.+ +..+.+ +-.+.+-+++|+..+++++..+.....+.
T Consensus 36 ~g~~~~~~gF~~Pt~y~~yk~~~~~gv~~~-~~~pflSf~lG~~~m~~~~~~~~k~~y~k 94 (152)
T PF07954_consen 36 GGYGGFMAGFFAPTAYYRYKTGAIKGVPVP-RQKPFLSFLLGLGAMMAGSQLAGKYQYNK 94 (152)
T ss_pred HHHHHHHHHHhhHHHHHHHhcccccCCcCC-ccCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455567777888776654111 111111 15678888999999999988887776653
No 130
>KOG1287|consensus
Probab=29.26 E-value=3.5e+02 Score=28.66 Aligned_cols=86 Identities=15% Similarity=0.249 Sum_probs=49.3
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC-----CCC-------ccchhHHHHHHHHHHHhhhh
Q psy17648 194 YVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSF-----PDG-------AIDTRSWMMLIGIFLIPLGF 261 (530)
Q Consensus 194 y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~-----~~~-------~~~~~~~~~i~~~~~~pl~~ 261 (530)
-.+.+++.+|. |. +.+-++..+..+|..-+.+...+..+.... |.. ....+.-++..+.+.+.+.+
T Consensus 275 av~Fa~~~~G~-~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~TP~~allf~~~~~i~~~~ 352 (479)
T KOG1287|consen 275 AVTFADRILGV-FA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRFTPRPALLFSGLLSIVLSL 352 (479)
T ss_pred HHHHHHHhccc-hH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCCCChHHHHHHHHHHHHHHH
Confidence 46788889998 76 888888888888877776666665554332 211 11222333444455555666
Q ss_pred cccchhh-hHHHHHHHHHHHH
Q psy17648 262 LKSLHHV-SMLSFWCTMSHIV 281 (530)
Q Consensus 262 ~~~l~~l-~~~s~~~~~~~~~ 281 (530)
+.++..+ .+++........+
T Consensus 353 ~~d~~~LIny~sf~~~l~~~l 373 (479)
T KOG1287|consen 353 IGDFDQLINYVSFAYWLFRGL 373 (479)
T ss_pred HhhHHHHHHHHHHHHHHHHHH
Confidence 6555444 4444444333333
No 131
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=28.85 E-value=2.5e+02 Score=22.77 Aligned_cols=21 Identities=10% Similarity=0.439 Sum_probs=13.6
Q ss_pred hhhhhhHHHHHHHHHHHHHHH
Q psy17648 496 AFDCFVIFLGCLFGIIGVYDS 516 (530)
Q Consensus 496 ~~~~~~i~~g~~~~v~g~y~s 516 (530)
.+.+.++++|+++++...|.-
T Consensus 75 ~~tl~~lllGv~~G~~n~w~w 95 (100)
T TIGR02230 75 SWTLTMLIVGVVIGCLNAWHW 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777666543
No 132
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=28.38 E-value=6.2e+02 Score=26.47 Aligned_cols=80 Identities=16% Similarity=0.073 Sum_probs=51.0
Q ss_pred hhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHHHHH
Q psy17648 201 CFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHI 280 (530)
Q Consensus 201 ~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 280 (530)
.+|. ||..++.+++.+..+.+.+.+.-....++.-++++.. ...+.++. ++..++...-+++....++.+......
T Consensus 329 ~~g~-~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~~--~~~~r~~~-~~~~~~g~~~~~~~vw~~~D~~~~lm~ 404 (425)
T TIGR00835 329 GLGS-FGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNKK--VKLYRLVF-LAAVFVGAFLSLDLVWNLADLSMGLMA 404 (425)
T ss_pred Hhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--cceeeehh-hHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4577 8899999999999999999999888888888775432 12222222 222233333456666666666555544
Q ss_pred HHHH
Q psy17648 281 VINV 284 (530)
Q Consensus 281 ~~~~ 284 (530)
+..+
T Consensus 405 i~Nl 408 (425)
T TIGR00835 405 IPNL 408 (425)
T ss_pred HHHH
Confidence 4433
No 133
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=24.39 E-value=9.1e+02 Score=26.01 Aligned_cols=23 Identities=9% Similarity=-0.097 Sum_probs=17.5
Q ss_pred CccHHHHHHHHHhhhhccccchh
Q psy17648 122 KINEWQAAWNVTNAIQGMFIVSL 144 (530)
Q Consensus 122 ~~s~~~~~~~l~~~~iG~GiL~l 144 (530)
+-+.++-+..+..+-+|.|++--
T Consensus 87 Efs~~SW~aMLFaAGmGigl~fw 109 (537)
T COG1292 87 EFSTLSWLAMLFAAGMGIGLLFW 109 (537)
T ss_pred CcchhHHHHHHHHcccCceeeEe
Confidence 35567777788899999998654
No 134
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=24.12 E-value=6.1e+02 Score=23.87 Aligned_cols=56 Identities=14% Similarity=0.123 Sum_probs=33.0
Q ss_pred HHHHhHhhhhHHHhhhhhhHHhhcCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHH
Q psy17648 463 GFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGS 518 (530)
Q Consensus 463 ~l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~y~si~ 518 (530)
...|.+++......+-.+++-|...++.+......+++++.+-++.++.|.+....
T Consensus 90 ~~~G~~aGi~~liGl~~Ll~RRl~~~~vr~~s~~~D~~~L~lLl~i~~tGl~~~~~ 145 (224)
T TIGR00351 90 MFAGGASGVLCLIGGVLLLKRRLFSPRVRATSTGADILILSLLLIQCLLGLLTIPF 145 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566666666666666666666544433333345666666666666666666543
No 135
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product. Cytochrome b ascorbate-dependent 3, as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=22.85 E-value=3.4e+02 Score=24.56 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=38.7
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhccCCC-chHHHHHHHHHHHHHHHhccchhhh
Q psy17648 338 RSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDS-AWFRGFVNFFLVVKALLSYPLPYYA 406 (530)
Q Consensus 338 p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~-~~~~~i~~~~~~i~~~~s~pl~~~~ 406 (530)
+++.+|.+....-..+++..++|+.....+-++. .+.+.+.- +|+....-.++.++.+..+....+|
T Consensus 66 ~k~~~K~~H~~L~~~Al~~~vvGl~avf~~hn~~--~~~nlySlHSWlGl~t~~Lf~lQ~~~Gf~~f~~p 133 (179)
T cd08762 66 PKLPWKLLHAGLLLLAFILTVIGLCAVFNFHNVH--HTANLYSLHSWVGICTVALFTCQWVMGFTSFLLP 133 (179)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4445677888887888888888877666665442 22222211 2555555556666666665444333
No 136
>KOG4580|consensus
Probab=22.67 E-value=4e+02 Score=21.76 Aligned_cols=64 Identities=9% Similarity=0.039 Sum_probs=32.8
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHH-HHHHHHHHHHHHHHHHHHHHhhhhcCcCCCC
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYEIDPNTGQ 186 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~g-ii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~ 186 (530)
++|+-..|-.+..+++. +|.+++.... +.|..+ .+..++.-+...|+..+...-......++++
T Consensus 16 NERTFl~WL~~tvlLg~-l~~~l~n~~~---~~g~~~a~v~t~vaif~~~ya~~lYlwRa~~I~~R~~~ 80 (112)
T KOG4580|consen 16 NERTFLSWLSVTVLLGG-LGFALYNSGD---RLGILSAYVYTLVAIFCGFYALFLYLWRASMIRQRSPG 80 (112)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34554455556566553 6777777766 555553 3333333334455555544444444444444
No 137
>PRK09928 choline transport protein BetT; Provisional
Probab=22.40 E-value=1.1e+03 Score=26.31 Aligned_cols=24 Identities=13% Similarity=-0.054 Sum_probs=18.3
Q ss_pred CCCccHHHHHHHHHhhhhccccch
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFIVS 143 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~GiL~ 143 (530)
+.+.|.++-+..+..+-+|.|++.
T Consensus 90 kPefS~~sW~aMLFaAGmGigLmf 113 (679)
T PRK09928 90 KPEFSLLSWAAMLFAAGIGIDLMF 113 (679)
T ss_pred CCCCCcchHHHHHHHHhhhhhhee
Confidence 344667777778899999999864
No 138
>PLN02810 carbon-monoxide oxygenase
Probab=22.06 E-value=3.7e+02 Score=25.39 Aligned_cols=70 Identities=13% Similarity=0.234 Sum_probs=39.7
Q ss_pred ccCccchhhHHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhccCCC-chHHHHHHHHHHHHHHHhccchhhh
Q psy17648 335 LIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDS-AWFRGFVNFFLVVKALLSYPLPYYA 406 (530)
Q Consensus 335 m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~-~~~~~i~~~~~~i~~~~s~pl~~~~ 406 (530)
.+.+++.+|.+....-..+++..++|+.....|-++. .+.+-+.- +|+....-.++.++-+..+-...+|
T Consensus 72 ~~~~k~~~K~iH~~lh~~Al~l~vvGl~Avf~~Hn~~--~i~nlySLHSWlGl~tv~Lf~lQw~~Gf~~Fl~P 142 (231)
T PLN02810 72 LPLKKEVKKLIHLVLHAIALILGIFGICAAFKNHNES--GIANLYSLHSWLGIGIISLYGIQWIYGFIVFFFP 142 (231)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CCCceeeHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3444556788888888888888888877666665442 22111111 2555555555666665555443333
No 139
>TIGR00811 sit silicon transporter. Marine diatoms such as Cylindrotheca fusiformis encode at least six silicon transport protein homologues which exhibit similar size and topology. One characterized member of the family (Sit1) functions in the energy-dependent uptake of either Silicic acid [Si(OH)4] or Silicate [Si(OH)3O-] by a Na+ symport mechanism. The system is found in marine diatoms which make their "glass houses" out of silicon.
Probab=21.82 E-value=9.5e+02 Score=25.29 Aligned_cols=15 Identities=27% Similarity=0.510 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHHHHH
Q psy17648 206 WGARAVNLAQMIELL 220 (530)
Q Consensus 206 ~g~~~~~i~~~i~~~ 220 (530)
|||.+..+.+...++
T Consensus 223 WgRvlmSLaIL~F~l 237 (545)
T TIGR00811 223 WGRVVFSLGVLCFAL 237 (545)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777766666555443
No 140
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=21.75 E-value=1e+03 Score=25.63 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=18.6
Q ss_pred hccchhhhHHHHHHHhhccCCCCCCC
Q psy17648 399 SYPLPYYAACELLETNYFKGGDSQFP 424 (530)
Q Consensus 399 s~pl~~~~~~~~~~~~~~~~~~~~~~ 424 (530)
+..+..+...+.+.+.+...++.+-|
T Consensus 363 ~~gL~~~~L~~ll~~~FYAr~d~ktP 388 (518)
T COG0728 363 SLGLIPFALVKLLSRVFYAREDTKTP 388 (518)
T ss_pred HHhhHHHHHHHHHHHHHHHccCCCcC
Confidence 44666778888888888777665544
No 141
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=21.55 E-value=8.5e+02 Score=25.57 Aligned_cols=127 Identities=15% Similarity=0.121 Sum_probs=62.7
Q ss_pred ccCccchhhHHHHHHHHHHHHHHHHHhHhhhhccCCchhhhhccCCCc-hHHHHHHHHHHHHHHHhccchhhhHHHHHHH
Q psy17648 335 LIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFDSA-WFRGFVNFFLVVKALLSYPLPYYAACELLET 413 (530)
Q Consensus 335 m~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~~~~~-~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~ 413 (530)
-||+++.+++...+..+..++-+++++..+. ..++++.-+..+ .......-.+-+..++..+..++...+.+.+
T Consensus 86 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr 160 (455)
T COG0534 86 AGDRKKAKRVLGQGLLLALLLGLLLAILLLF-----FAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILR 160 (455)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667788888888777777677666653 123344444321 1222222223333333333333333333322
Q ss_pred hhccCCCCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhh-ccc-HHHHHHHHHhHhhhhHHHhhhhhhHH
Q psy17648 414 NYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVF-IPH-FAILMGFIGSFTGTMLSFIWPCYFHL 483 (530)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~-ip~-~~~li~l~Ga~~~~~~~~i~P~l~~l 483 (530)
. ..+++.| ..+..+..++-.++... +-. ++. +++.|+-..+.++..+.+++.+
T Consensus 161 ~---~G~~~~~-------------m~~~~~~~~lNivln~llI~g~~g~-lGv~GAA~AT~ia~~~~~~~~~ 215 (455)
T COG0534 161 G---LGDTKTP-------------MYILLLGNLLNIVLNYLLIFGLFGG-LGVAGAALATVIARWIGALLLL 215 (455)
T ss_pred h---cCCCchh-------------HHHHHHHHHHHHHhhHHHHHhcccc-ccchhHHHHHHHHHHHHHHHHH
Confidence 1 1122222 23333333333333321 111 333 8889988888888888776655
No 142
>KOG4112|consensus
Probab=21.39 E-value=3.4e+02 Score=21.58 Aligned_cols=45 Identities=7% Similarity=0.026 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhh
Q psy17648 441 RVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKL 485 (530)
Q Consensus 441 ~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~ 485 (530)
-.+..++.++.+.+...++..+-.+|+-+......++|+.=+++.
T Consensus 32 lti~aiVg~i~Gf~~Qqls~tvy~vg~~~v~t~li~LPpwP~y~r 76 (101)
T KOG4112|consen 32 LTIGAIVGFIYGFAQQQLSVTVYIVGAGFVFTLLITLPPWPWYRR 76 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhhhc
Confidence 344456667777777889999999998888888889999888765
No 143
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=21.03 E-value=2.4e+02 Score=22.04 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=29.7
Q ss_pred HHHHhhhhcccceecccccccccCccchh-hHHHHHHHHHHHHHHHHHhHhhhhcc
Q psy17648 314 SLGVIVFSYTSQIFLPTLEGNLIDRSKFD-WMLDWSHIAAAIFKSMFGYLCFLTFQ 368 (530)
Q Consensus 314 a~~~~~faf~~~~~i~~i~~em~~p~~~~-~~i~~s~~~~~~~Y~~~g~~gy~~fG 368 (530)
..|+++.+-.|..........-.+|.+.. |++.+ +.++..+-+++|++.|..||
T Consensus 16 i~GIiLL~~ACIFAfidFSK~~s~~~~~~wRalSi-i~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 16 ICGVLLLTAACVFAFVDFSKNTSNVTDYVWRALSV-TCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred HHHHHHHHHHHHHhhhhhhccCCCCcchhHHHHHH-HHHHHHHHHHHHHHHHHHhc
Confidence 34444545555544555554444555543 44433 33344455677888888887
No 144
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=20.64 E-value=7.7e+02 Score=25.89 Aligned_cols=29 Identities=3% Similarity=-0.026 Sum_probs=18.5
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHHhHhh
Q psy17648 336 IDRSKFDWMLDWSHIAAAIFKSMFGYLCF 364 (530)
Q Consensus 336 ~~p~~~~~~i~~s~~~~~~~Y~~~g~~gy 364 (530)
||++|.++..+.+..+..++-.++++.-|
T Consensus 311 ~~~~~a~~~~~~~~~~~~~~~~~~~~i~~ 339 (455)
T COG0534 311 GNYKRARRAARLALKLSLLIALLIALLLL 339 (455)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777776666666665555544
No 145
>PLN03223 Polycystin cation channel protein; Provisional
Probab=20.37 E-value=1.5e+03 Score=27.73 Aligned_cols=28 Identities=25% Similarity=0.392 Sum_probs=17.0
Q ss_pred hhCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17648 201 CFGPVWGARAVNLAQMIELLMTCILYVVVC 230 (530)
Q Consensus 201 ~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~ 230 (530)
.|-..| -.+++++++..+.+.+.|+++.
T Consensus 1210 YFKSfW--NwLEIl~IlLS~AAIvLYFvf~ 1237 (1634)
T PLN03223 1210 YFLSGW--NYVDFASIGLHLATIMMWFVFS 1237 (1634)
T ss_pred Hhccch--HHHHHHHHHHHHHHHHHHHHHH
Confidence 354435 4667777777777777666543
No 146
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=20.27 E-value=1.6e+02 Score=27.63 Aligned_cols=56 Identities=16% Similarity=0.223 Sum_probs=37.6
Q ss_pred HHHhHhhhhHHHhhhhhhHHhhcCCCCchhhhhhhhhhHHHHHHHHHHHHHHHHHH
Q psy17648 464 FIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSA 519 (530)
Q Consensus 464 l~Ga~~~~~~~~i~P~l~~l~~~~~~~~~~~~~~~~~~i~~g~~~~v~g~y~si~~ 519 (530)
+.|+.++.......-.+++-|..+++.+......+++.+++-++..+.|.++....
T Consensus 91 ~~G~iaGv~~liG~~~L~~RR~~~~rvR~~St~~D~f~lilLla~~~~Gl~~~~~~ 146 (228)
T COG2181 91 VLGGIAGVLTLIGLTLLLLRRLFDPRVRATSTPSDIFALLLLLAQLLLGLYATPFS 146 (228)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHhccceeecCChhHHHHHHHHHHHHHhhhhhhhhc
Confidence 45778877777778888888887665544444556666666666666666665544
Done!