Query psy17648
Match_columns 530
No_of_seqs 287 out of 1490
Neff 9.1
Searched_HMMs 29240
Date Fri Aug 16 19:26:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17648.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17648hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3l1l_A Arginine/agmatine antip 99.9 1E-20 3.4E-25 197.8 32.4 358 118-490 5-380 (445)
2 3gia_A Uncharacterized protein 99.8 1.4E-18 4.6E-23 181.6 30.9 352 119-488 4-368 (444)
3 4djk_A Probable glutamate/gamm 99.8 5.1E-16 1.7E-20 165.0 31.9 348 117-486 7-393 (511)
4 2jln_A MHP1; hydantoin, transp 98.7 3.2E-06 1.1E-10 88.8 25.7 285 119-415 23-330 (501)
5 3dh4_A Sodium/glucose cotransp 98.5 0.00011 3.8E-09 77.6 30.3 331 120-469 19-402 (530)
6 2xq2_A Sodium/glucose cotransp 98.0 0.0015 5.1E-08 69.9 25.7 151 120-283 48-200 (593)
7 2a65_A Leutaa, Na(+):neurotran 90.7 17 0.00058 37.5 30.3 33 311-343 244-277 (519)
8 4ain_A Glycine betaine transpo 41.3 1E+02 0.0035 31.8 9.3 153 119-275 92-272 (539)
9 2wsw_A BCCT family betaine/car 22.6 6.2E+02 0.021 25.7 16.5 26 119-144 87-112 (509)
10 3gia_A Uncharacterized protein 15.7 3.5E+02 0.012 26.4 7.9 41 193-234 259-299 (444)
No 1
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=99.89 E-value=1e-20 Score=197.80 Aligned_cols=358 Identities=15% Similarity=0.102 Sum_probs=235.3
Q ss_pred cCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 118 RSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 118 ~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
+++|+.+.++.++..+++++|+|++.+|..+.++|..+++.+++.++++...+..+.|..... |+.| .+.+.
T Consensus 5 ~~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~-p~~G-------g~y~~ 76 (445)
T 3l1l_A 5 ADAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLD-PSPG-------GSYAY 76 (445)
T ss_dssp --CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCTT-------THHHH
T ss_pred CCCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccC-CCCC-------Cchhh
Confidence 367889999999999999999999999988888887666777777777776666666554443 3333 56667
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHH-HHHHHHHhhhhcccchhhhHHHHHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMM-LIGIFLIPLGFLKSLHHVSMLSFWCT 276 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~-i~~~~~~pl~~~~~l~~l~~~s~~~~ 276 (530)
.++.+||. ..++..+..++........+....++.+..++|....+...+.+ +..++++-+...+.++..++++.+.+
T Consensus 77 ~~~~~G~~-~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~ 155 (445)
T 3l1l_A 77 ARRCFGPF-LGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILKDPWVLTITCVVVLWIFVLLNIVGPKMITRVQAVAT 155 (445)
T ss_dssp HHHHSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGGSHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHhHcCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccccccHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 78899995 56778888888777777778888888888777643222111211 11222222333357888888888877
Q ss_pred HHHHHHHHhheeeeeeecCccCC-cccc--ccccccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHHHHHHH
Q psy17648 277 MSHIVINVVILGYCLLQIGDWGW-GKVK--WTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDWSHIAA 352 (530)
Q Consensus 277 ~~~~~~~~iii~~~~~~~~~~~~-~~~~--~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~s~~~~ 352 (530)
..++..+++++..++........ ++.. ...++.++..++...+|+|.|++....+.+|+|||+| .||++..+..++
T Consensus 156 ~~~i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~ 235 (445)
T 3l1l_A 156 VLALIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIA 235 (445)
T ss_dssp HHHHHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHH
Confidence 76666555444433322211111 1111 1113456788999999999999999999999999987 699999999999
Q ss_pred HHHHHHHHhHhhhhccCCch----h---hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCc
Q psy17648 353 AIFKSMFGYLCFLTFQNDTQ----Q---VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPS 425 (530)
Q Consensus 353 ~~~Y~~~g~~gy~~fG~~~~----~---~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~ 425 (530)
.++|++..+......+.+.. . .+......++...++.+...++.+.+.....+...|.++..- |++..|+
T Consensus 236 ~~~y~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~sR~~~~~a---~dg~lP~ 312 (445)
T 3l1l_A 236 AVCYVLSTTAIMGMIPNAALRVSASPFGDAARMALGDTAGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAA---DDGLFPP 312 (445)
T ss_dssp HHHHHHHHHHHHHHSCTTTSCSTTCTHHHHHHHHHCTTHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHH---HTTSSCG
T ss_pred HHHHHHHHHHHHhcCCHHHHhccCcHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCCCcH
Confidence 99999998877766553321 1 122222233566778888888888999999999999987653 2344554
Q ss_pred cccC--CcchhhHHHHHHHHHHHHHHHHHhhc----ccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCCCC
Q psy17648 426 IWHL--DGELKVWGLMFRVAVVLFTIMMAVFI----PHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSL 490 (530)
Q Consensus 426 ~~~~--~~~~~~~~~~~~~~~~~~~~~ia~~i----p~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~~~ 490 (530)
...+ +++.|...+++..++..+..++ ... ..++.+.++.+ ....+.|.++++.+++.|+++.
T Consensus 313 ~~~~~~~~~~P~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~--~~~~~~y~~~~~~~~~~r~~~~ 380 (445)
T 3l1l_A 313 IFARVNKAGTPVAGLIIVGILMTIFQLS-SISPNATKEFGLVSSVSV--IFTLVPYLYTCAALLLLGHGHF 380 (445)
T ss_dssp GGGCCCTTCCCHHHHHHHHHHHHHHHHS-TTSHHHHCCCHHHHHHHH--HHHHHHHHHHHHHHHHHHSSSS
T ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHHHH-HHcccHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCc
Confidence 3221 3456666555554433332211 112 24677777744 4567888999998888876543
No 2
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=99.84 E-value=1.4e-18 Score=181.57 Aligned_cols=352 Identities=9% Similarity=0.013 Sum_probs=226.1
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHH-HHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPF-AVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSI 197 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~-a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l 197 (530)
++|+.+.++.++..+++++|+|++..|. +...+|...++.+++.++++...+..+.|.....+ +.| ...+.
T Consensus 4 ~~r~l~~~~~~~l~~g~~iG~gi~~~~~~~~~~~G~~~~~~~li~~~~~~~~~~~~~el~~~~P-~~G-------g~y~~ 75 (444)
T 3gia_A 4 KNKKLSLWEAVSMAVGVMIGASIFSIFGVGAKIAGRNLPETFILSGIYALLVAYSYTKLGAKIV-SNA-------GPIAF 75 (444)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTTSHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHTTCC-CTT-------THHHH
T ss_pred cCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhhCC-CCC-------cHHHh
Confidence 5788999999999999999999998874 46677764577777777777777766666554433 333 56677
Q ss_pred HHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHH--HHHHhhhhcccchhhhHHHHHH
Q psy17648 198 ASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIG--IFLIPLGFLKSLHHVSMLSFWC 275 (530)
Q Consensus 198 ~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~--~~~~pl~~~~~l~~l~~~s~~~ 275 (530)
.++.+|+++....+.+..++.....+..+....++.+..+++....+. ...++.. ++++-+...+..+..++++.+.
T Consensus 76 ~~~~~G~~~~~g~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~ 154 (444)
T 3gia_A 76 IHKAIGDNIITGALSILLWMSYVISIALFAKGFAGYFLPLINAPINTF-NIAITEIGIVAFFTALNFFGSKAVGRAEFFI 154 (444)
T ss_dssp HHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 788999964222335666666666777788888888888876532211 1112222 2222233345788888888887
Q ss_pred HHHHHHHHHhheeeeeeecCccCCccccccccccchhHHHHHhhhhcccceecccccccccCccc-hhhHHHHHHHHHHH
Q psy17648 276 TMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK-FDWMLDWSHIAAAI 354 (530)
Q Consensus 276 ~~~~~~~~~iii~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~-~~~~i~~s~~~~~~ 354 (530)
+..++...+++++.++......+..+..++.++.++..++....|+|.|++......+|+|||+| .||++..+..++.+
T Consensus 155 ~~~~i~~~~~~ii~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P~r~ip~ai~~~~~~~~~ 234 (444)
T 3gia_A 155 VLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFLSYMGFGVITNASEHIENPKKNVPRAIFISILIVMF 234 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHCCGGGTSCCCSHHHHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcChhhcCCCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHccCcccchhHHHHHHHHHHHH
Confidence 77666665544444433221111111111223345778888899999999999999999999988 69999999999999
Q ss_pred HHHHHHhHhhhhccCCch----h----hhhccCCCchHHHHHHHHHHHHHHHhccchhhhHHHHHHHhhccCCCCCCCcc
Q psy17648 355 FKSMFGYLCFLTFQNDTQ----Q----VITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSI 426 (530)
Q Consensus 355 ~Y~~~g~~gy~~fG~~~~----~----~il~~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~~~~~~~~ 426 (530)
+|++..+......+.+.. + .+......++...++.+...++.+.+....++...|.+...-. ++..|+.
T Consensus 235 ~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~~~sR~l~a~a~---dg~lP~~ 311 (444)
T 3gia_A 235 VYVGVAISAIGNLPIDELIKASENALAVAAKPFLGNLGFLLISIGALFSISSAMNATIYGGANVAYSLAK---DGELPEF 311 (444)
T ss_dssp HHHHHHHHHHTTSCHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHH---HSSCCSS
T ss_pred HHHHHHHHHHhCCCHHHHhcccchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCCHH
Confidence 999887765544432210 0 1111111123455677778888888888889999999876542 3334433
Q ss_pred cc-CCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhHhhhhHHHhhhhhhHHhhcCC
Q psy17648 427 WH-LDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGG 488 (530)
Q Consensus 427 ~~-~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~Ga~~~~~~~~i~P~l~~l~~~~~ 488 (530)
.. .+++.|...+++..++..+..++ .+++.+.++. ..+..+.|.++++.++++||+
T Consensus 312 f~~~~~~~P~~a~~~~~~~~~~~~~~----~~~~~l~~~~--~~~~~~~~~~~~~~~~~~r~~ 368 (444)
T 3gia_A 312 FERKVWFKSTEGLYITSALGVLFALL----FNMEGVASIT--SAVFMVIYLFVILSHYILIDE 368 (444)
T ss_dssp CCTTSCCSCTHHHHHHHHHHHHHHHH----SCHHHHHHHH--HHHHHHHHHHHHHHHHHTHHH
T ss_pred HhCCCCCCCcHHHHHHHHHHHHHHHH----cCHHHHHHHH--HHHHHHHHHHHHHHHHHhhhc
Confidence 21 12234555454444333222222 3688888884 345678888888888877653
No 3
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=99.76 E-value=5.1e-16 Score=165.02 Aligned_cols=348 Identities=9% Similarity=0.088 Sum_probs=198.0
Q ss_pred ccCCCCccHHHHHHHHHhhhhccccchhHHHHHhccHHHHHHHHHHHHHHH-HHHHHHHHhhh--hcCcCCCCccccCCC
Q psy17648 117 ERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICC-YTGKILVECLY--EIDPNTGQRVRVRNS 193 (530)
Q Consensus 117 ~~~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~~G~~gii~~i~~~~~~~-~~~~ll~~~~~--~~~~~~g~~~~~~~~ 193 (530)
++++|+.+.++.++..++.++| +.++|. ....|...++..++.+++.. ..+..+.|... .. | +| .
T Consensus 7 ~~~~r~l~~~~~~~l~~~~~ig--~~~~~~-~~~~G~~~~~~~~i~~~~~~l~~al~~ael~s~~~~-P-~G-------G 74 (511)
T 4djk_A 7 TGKAKQLTLLGFFAITASMVMA--VYEYPT-FATSGFSLVFFLLLGGILWFIPVGLCAAEMATVDGW-E-EG-------G 74 (511)
T ss_dssp -----CCCHHHHHHHTGGGGCC--GGGHHH-HHTTTTHHHHHHHHHHHHTHHHHHHHHHHHHTTSCC------------C
T ss_pred CccCccccHHHHHHHHHHHHHh--hchhHH-HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccC-C-CC-------C
Confidence 3477899999999999999986 567775 46677644444433333322 24444455444 33 3 44 5
Q ss_pred HHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccC--CCCccchh-HH-HHHHHHHHHhhhhcccchhhh
Q psy17648 194 YVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSF--PDGAIDTR-SW-MMLIGIFLIPLGFLKSLHHVS 269 (530)
Q Consensus 194 y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~--~~~~~~~~-~~-~~i~~~~~~pl~~~~~l~~l~ 269 (530)
.....++.+||++ .++..+..++.......++.....+.+..++ |+...+.. .+ ..+..++++-+...+..+...
T Consensus 75 ~y~~~~~~~g~~~-g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~in~~g~~~~~ 153 (511)
T 4djk_A 75 VFAWVSNTLGPRW-GFAAISFGYLQIAIGFIPMLYFVLGALSYILKWPALNEDPITKTIAALIILWALALTQFGGTKYTA 153 (511)
T ss_dssp HHHHHHHHHCHHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHTTTTCGGGTSCSSHHHHHHHHHHHHHHHHHHTCSSSHH
T ss_pred hhhhHHhhcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccCcHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 6667777999965 5777777777766666666666666665553 22111111 11 111122222222334677777
Q ss_pred HHHHHHHHHH-HHHHHhheeeeeeecCcc-------CCccccccccccchhHHHHHhhhhcccceecccccccccCccc-
Q psy17648 270 MLSFWCTMSH-IVINVVILGYCLLQIGDW-------GWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSK- 340 (530)
Q Consensus 270 ~~s~~~~~~~-~~~~~iii~~~~~~~~~~-------~~~~~~~~~~~~~~~~a~~~~~faf~~~~~i~~i~~em~~p~~- 340 (530)
+++.+..+.. +..+++++..++...... +.++........+...++...+|+|.|++....+.+|+|||+|
T Consensus 154 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~G~e~~~~~a~E~k~P~k~ 233 (511)
T 4djk_A 154 RIAKVGFFAGILLPAFILIALAAIYLHSGAPVAIEMDSKTFFPDFSKVGTLVVFVAFILSYMGVEASATHVNEMSNPGRD 233 (511)
T ss_dssp HHTHHHHHHTTHHHHHHHHHHHHHHTC------------CCCCCTTSTTTTTTHHHHHHHHTTGGGGTGGGSSSSCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcccccCCCcccchHHHHHHHHHHHHhhHHHHHHHHHhccCcccc
Confidence 7776654432 211222222221111000 1111111111123445678899999999999999999999988
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhhhccCCch----------hhhhccCC--CchHHHHHHHHHHHHHHHhccchhhhHH
Q psy17648 341 FDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQ----------QVITNNFD--SAWFRGFVNFFLVVKALLSYPLPYYAAC 408 (530)
Q Consensus 341 ~~~~i~~s~~~~~~~Y~~~g~~gy~~fG~~~~----------~~il~~~~--~~~~~~i~~~~~~i~~~~s~pl~~~~~~ 408 (530)
.||++..++.+++++|++..+......+++.. ..+..... ..+...++.+...++.+.+....++...
T Consensus 234 ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 313 (511)
T 4djk_A 234 YPLAMLLLMVAAICLSSVGGLSIAMVIPGNEINLSAGVMQTFTVLMSHVAPEIEWTVRVISALLLLGVLAEIASWIVGPS 313 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCCSSSTHHHHHHHHHSSSCSSCTTHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHeecCHhhccccchHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999988877665554321 12233444 3467778888888888888888888889
Q ss_pred HHHHHhhccCCCCCCCcc---ccCCcchhhHHHHHHHHHHHHHHHHHhhccc--------HHHHHHHHHhHhhhhHHHhh
Q psy17648 409 ELLETNYFKGGDSQFPSI---WHLDGELKVWGLMFRVAVVLFTIMMAVFIPH--------FAILMGFIGSFTGTMLSFIW 477 (530)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~--------~~~li~l~Ga~~~~~~~~i~ 477 (530)
|.++..- |++..|+. .+ +++.|...+++...+..+ ....+++ ++.+.++.+. ...+.|.+
T Consensus 314 R~l~a~a---rdg~lP~~~~~~~-~~~~P~~ai~~~~~~~~l---~~~~~~~~~~~~~~~f~~l~~~~~~--~~~~~y~~ 384 (511)
T 4djk_A 314 RGMYVTA---QKNLLPAAFAKMN-KNGVPVTLVISQLVITSI---ALIILTNTGGGNNMSFLIALALTVV--IYLCAYFM 384 (511)
T ss_dssp HHTCHHH---HGGGCSSSCCCCC-SSSCCCHHHHHHHHHHHH---HHHHHHSSSSHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHc---cCCcccHHHHhcC-CCCCcHHHHHHHHHHHHH---HHHHhccccchHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9886543 22333432 23 245666665555222221 1122233 5666666443 45666777
Q ss_pred hhhhHHhhc
Q psy17648 478 PCYFHLKLK 486 (530)
Q Consensus 478 P~l~~l~~~ 486 (530)
+.+.+++.+
T Consensus 385 ~~~~~~~~r 393 (511)
T 4djk_A 385 LFIGYIVLV 393 (511)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 766555443
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=98.72 E-value=3.2e-06 Score=88.79 Aligned_cols=285 Identities=8% Similarity=0.007 Sum_probs=148.1
Q ss_pred CCCCccHHHHHHHHHhhhhccccchhHHHHHh-ccHH-HHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHH
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSLPFAVLR-GGYW-AIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~lP~a~~~-~G~~-gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~ 196 (530)
.+|+.+.++-+..-.+..++.+.+.+...+.. .+++ .++++++..++....+.+.... ++++| .+|..
T Consensus 23 ~~R~~~~~~~~~~W~g~~~~i~~~~~Ga~~~~GLs~~~a~lai~lG~li~~~~~~l~~~~----G~~~G------l~~~v 92 (501)
T 2jln_A 23 AERSVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSA----AIRWG------INFTV 92 (501)
T ss_dssp GGCCBCHHHHHHHHHHHHCSTHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHTHH----HHHHC------CCHHH
T ss_pred hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHhHH----HhhcC------CChhh
Confidence 34567788887777777777776666655444 2334 4444433333333222222222 22233 27999
Q ss_pred HHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCCC-ccc-hhHHHHHHHHHHHhhhhcccchhhhHHHHH
Q psy17648 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDG-AID-TRSWMMLIGIFLIPLGFLKSLHHVSMLSFW 274 (530)
Q Consensus 197 l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l~~~~~~~-~~~-~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 274 (530)
+.+..||+ +|..+..+...+..++-..+-....++.+...+... +.+ .....+++.++.+++.+. .++.+.+++.+
T Consensus 93 ~~R~~FG~-~Gs~i~~ll~~i~~igw~~v~~~~gg~al~~~~~~~~g~~~~~v~~~i~~~l~~~~~~~-G~~~i~~~~~~ 170 (501)
T 2jln_A 93 AARMPFGI-RGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLTGFTNLPLWIVIFGAIQVVTTFY-GITFIRWMNVF 170 (501)
T ss_dssp HTTTTSCT-TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhHhhcch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-CHHHHHHHHHH
Confidence 99999999 688888888888888888877777787776654200 112 334455566666666643 46666666666
Q ss_pred HHHHHHHHHHhheeeeeeecCc--cCCccccccccccchhHHHHH-hhhhcccceecccccccccCccc---------hh
Q psy17648 275 CTMSHIVINVVILGYCLLQIGD--WGWGKVKWTLDMENFPISLGV-IVFSYTSQIFLPTLEGNLIDRSK---------FD 342 (530)
Q Consensus 275 ~~~~~~~~~~iii~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~-~~faf~~~~~i~~i~~em~~p~~---------~~ 342 (530)
.....++..+.+.+..+...+. ....+.+.......+..++.. +.+.-....+.+...+++|++++ .+
T Consensus 171 ~~p~~~i~~i~~~~~~l~~~g~~~~~~~~~~~~~~~~~f~~ai~~~~~~~~~~~~~~~DysRy~~~~~~~~~~~~~~~~~ 250 (501)
T 2jln_A 171 ASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADA 250 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHTTCCCSSCCSCHHHHHHHHHTTTHHHHTTTHHHHTTBCCCTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcchhhhccCCccchHHHHHHHHHHHHHHHHHHhccCcccccCCCCccccccchhhccc
Confidence 5544444433333322222110 000000001112234444433 22222334667888899988876 22
Q ss_pred hH---HHHHHHHHHHHHHHHHhHhhhhccCCchhhhhcc-CCCchH-HHHHH-HHHHHHHHHhccc-hhhhHHHHHHHhh
Q psy17648 343 WM---LDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNN-FDSAWF-RGFVN-FFLVVKALLSYPL-PYYAACELLETNY 415 (530)
Q Consensus 343 ~~---i~~s~~~~~~~Y~~~g~~gy~~fG~~~~~~il~~-~~~~~~-~~i~~-~~~~i~~~~s~pl-~~~~~~~~~~~~~ 415 (530)
++ ...+..+..++..++|+..-...+......++.. ++.... ..+.- +.+.++.+.+--. ..|+....+.+.+
T Consensus 251 ~~~~g~~lG~~i~~~~~~~lG~~~~~~~~~~dp~~~l~~~l~~~~~~~~~~~~~~~~la~i~tn~~~n~ys~~~~l~~~~ 330 (501)
T 2jln_A 251 RYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGVSIPMAILFQVFVLLATWSTNPAANLLSPAYTLCSTF 330 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHTCCCHHHHHHHHHHHHHHHHTTHHHHHTHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhC
Confidence 22 2233444444455555543323333222233333 222222 44444 5555555555443 6777777776654
No 5
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=98.50 E-value=0.00011 Score=77.58 Aligned_cols=331 Identities=10% Similarity=0.058 Sum_probs=156.2
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
.|+.+++...+.+..+.+++.. +++|-.....|+.+.......++.....+..+..-+++.+ ..|..|+.
T Consensus 19 GR~l~~~~~~~s~~at~~Sa~~~lG~~g~~y~~G~~~~~~~~~~~~~~~i~~~~~~p~~~~~~---------~~T~~e~l 89 (530)
T 3dh4_A 19 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKG---------IYTIPEFV 89 (530)
T ss_dssp CSCCCHHHHHHHHHHHHCSHHHHTHHHHHHHHTCGGGHHHHHHHHHHHHHHHHHTHHHHHHTT---------CCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcC---------CccHHHHH
Confidence 5778999999999999998876 6889776677764211100011111112222223333221 55999999
Q ss_pred HHhhCchhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMI-ELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTM 277 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i-~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 277 (530)
++-||++ .+.+..+...+ +.+..+.+-+...+..++..++ ++...-+++.++++..-+..-.++...+...+-.+
T Consensus 90 ~~Rfg~~-~~~~~a~~~l~~~~~~~~~~~l~~~~~~~~~~~G---i~~~~~i~i~~~i~~~Yt~~GGl~aV~~TD~iQ~~ 165 (530)
T 3dh4_A 90 EKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG---IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 165 (530)
T ss_dssp HHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTC------CCSHHHHHHH
T ss_pred HHHcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9999995 56666554433 2333333333344555666653 45555556666666666676677777666666554
Q ss_pred HHHHHHHhheeeeeeecCcc-------------CCcccc--------ccccccchhHHHHH---hhhhcccc-eeccccc
Q psy17648 278 SHIVINVVILGYCLLQIGDW-------------GWGKVK--------WTLDMENFPISLGV---IVFSYTSQ-IFLPTLE 332 (530)
Q Consensus 278 ~~~~~~~iii~~~~~~~~~~-------------~~~~~~--------~~~~~~~~~~a~~~---~~faf~~~-~~i~~i~ 332 (530)
..++..+++.+..+...+.. ..+... ...+...+...++. ..+.|.|. +.+..-.
T Consensus 166 im~~g~~~v~~~~~~~~Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~g~~q~i~qR~ 245 (530)
T 3dh4_A 166 FLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRT 245 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHCGGGGCSSCCSSSSGGGGSCTTHHHHSTHHHHHHHHTTTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCchhcccccCCCCccccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 44443333322222111110 000000 00011112222211 11223221 2121112
Q ss_pred ccccCccchhhHHHHHHHHHHHHH---HHHHhHhhhhccC-----------------C-chh----hhhccCCCchHHHH
Q psy17648 333 GNLIDRSKFDWMLDWSHIAAAIFK---SMFGYLCFLTFQN-----------------D-TQQ----VITNNFDSAWFRGF 387 (530)
Q Consensus 333 ~em~~p~~~~~~i~~s~~~~~~~Y---~~~g~~gy~~fG~-----------------~-~~~----~il~~~~~~~~~~i 387 (530)
-..||++.-+|...++......+. .+.|+..+..+++ . ..+ .+...+| +++..+
T Consensus 246 laaks~k~ar~~~~~~~~~~~~~~~~~~~~Gl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~p~l~~~lp-~~l~Gl 324 (530)
T 3dh4_A 246 LAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLP-VGVKGV 324 (530)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHCHHHHHHHCTTCCSCCCCSSSGGGHHHHHHTTCC-TTHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccchhhcccccccCCCCCCcchHHHHHHHHcc-hhHHHH
Confidence 234666666666555544433322 4556666655521 1 111 2223333 355666
Q ss_pred HHHHHHHHHHHhccchhhhHHHHHHHhhccCC-CCCCCccccCCcchhhHHHHHHHHHHHHHHHHHhhcccHHHHHHHHH
Q psy17648 388 VNFFLVVKALLSYPLPYYAACELLETNYFKGG-DSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIG 466 (530)
Q Consensus 388 ~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~ip~~~~li~l~G 466 (530)
.-..+.-+++++.-..+......+-+-+.++- +++. .+++..+..-+...++.+++.++|...++++.+++++-
T Consensus 325 ~~a~llAA~mST~ss~l~s~st~~~~Diy~~~~~~~~-----s~~~~~~v~R~~~v~~~i~a~~~a~~~~~~~~~~~~~~ 399 (530)
T 3dh4_A 325 VFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDS-----GDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQ 399 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCSCS-----CSSHHHHHHHHHHHHHHHHHHHHGGGGGGCSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHhcCCCC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 55566666677777777777766644443321 1111 12222222233445555666667755555555555543
Q ss_pred hHh
Q psy17648 467 SFT 469 (530)
Q Consensus 467 a~~ 469 (530)
.+.
T Consensus 400 ~~~ 402 (530)
T 3dh4_A 400 EYT 402 (530)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=98.01 E-value=0.0015 Score=69.93 Aligned_cols=151 Identities=9% Similarity=-0.007 Sum_probs=78.7
Q ss_pred CCCccHHHHHHHHHhhhhcccc-chhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhhhhcCcCCCCccccCCCHHHHH
Q psy17648 120 RHKINEWQAAWNVTNAIQGMFI-VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA 198 (530)
Q Consensus 120 ~~~~s~~~~~~~l~~~~iG~Gi-L~lP~a~~~~G~~gii~~i~~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~~~y~~l~ 198 (530)
.|+.+++...+.+..+.+++.. ++.|-...+.|+.........++.....+..+..-+++.+ ..|..|..
T Consensus 48 GR~l~~~~~~~Sl~at~~sa~t~lG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~---------~~T~~e~l 118 (593)
T 2xq2_A 48 GKSLPWWAVGASLIAANISAEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKG---------IYTIPEFV 118 (593)
T ss_dssp ---CCHHHHHHHHHGGGSSHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHHHTHHHHHHHTT---------CCSHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcHHHHhhHhHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------CCCcHHHH
Confidence 4678899999999988888876 6788766666753110000001111111222222232221 45999999
Q ss_pred HHhhCchhHHHHHHHHHHH-HHHHHHHHHHHHHHhhhcccCCCCccchhHHHHHHHHHHHhhhhcccchhhhHHHHHHHH
Q psy17648 199 SECFGPVWGARAVNLAQMI-ELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTM 277 (530)
Q Consensus 199 ~~~~G~~~g~~~~~i~~~i-~~~~~~~~y~i~~~~~l~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 277 (530)
++=||++ .+.+..+...+ ..+.....-+...+..++.+++ ++....+++.++++...+..-.++...+...+-.+
T Consensus 119 ~~Rfg~~-~~~~~ai~~l~~~~~~~~~~~l~~~~~~l~~~~G---i~~~~~i~i~~~i~~~Yt~~GGl~av~~TD~iQ~i 194 (593)
T 2xq2_A 119 EKRFNKK-LKTILAVFWISLYIFVNLTSVLYLGGLALETILG---IPLMYSILGLALFALVYSIYGGLSAVVWTDVIQVF 194 (593)
T ss_dssp HHHTCHH-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHHTTC---CCHHHHHHHH
T ss_pred HHHccCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---ccHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 9899985 56555544332 2333333333344555665553 44444455555666666666666666666655554
Q ss_pred HHHHHH
Q psy17648 278 SHIVIN 283 (530)
Q Consensus 278 ~~~~~~ 283 (530)
.+++..
T Consensus 195 iml~~~ 200 (593)
T 2xq2_A 195 FLVLGG 200 (593)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 7
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=90.70 E-value=17 Score=37.55 Aligned_cols=33 Identities=12% Similarity=0.130 Sum_probs=24.9
Q ss_pred hhHHHHHhhhhcc-cceecccccccccCccchhh
Q psy17648 311 FPISLGVIVFSYT-SQIFLPTLEGNLIDRSKFDW 343 (530)
Q Consensus 311 ~~~a~~~~~faf~-~~~~i~~i~~em~~p~~~~~ 343 (530)
+..|.+.+.|+++ |...+...-+.+++.++..+
T Consensus 244 w~~A~gQ~FFSLslG~G~~ity~SY~~~~~n~~~ 277 (519)
T 2a65_A 244 WIAAVGQIFFTLSLGFGAIITYASYVRKDQDIVL 277 (519)
T ss_dssp HHHHHHHHHHHHTTTSSHHHHHHTTSCTTSCCHH
T ss_pred HHHHHHHHHHHhHHHHhHHhhhhcccCCCcChHh
Confidence 5689999999998 46667777777877777544
No 8
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=41.33 E-value=1e+02 Score=31.78 Aligned_cols=153 Identities=10% Similarity=-0.045 Sum_probs=72.7
Q ss_pred CCCCccHHHHHHHHHhhhhccccchh----HHH-HHh--cc------HHHHHHHHHHHHHHHHHHH---HHHHhhhhcCc
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSL----PFA-VLR--GG------YWAIFAMIGIAYICCYTGK---ILVECLYEIDP 182 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~l----P~a-~~~--~G------~~gii~~i~~~~~~~~~~~---ll~~~~~~~~~ 182 (530)
.+.+.|.++=+..+..+-+|.|++.- |.. +.+ .| -.......+=|.+..|..+ -+..++..+
T Consensus 92 ~kPefS~~sW~aMlF~AGmGiGl~FwgvaEPl~h~~~pP~~~~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~y-- 169 (539)
T 4ain_A 92 EAPEFRTVSWISMMFAAGMGIGLMFYGTTEPLTFYRNGVPGHDEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTF-- 169 (539)
T ss_dssp CCCSSCHHHHHHHHHTTSCCTHHHHHHHHHHHHHHHTCCTTSCSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCC--
T ss_pred CCCCCcchHHHHHHHHHhhcchheeehhhhhHHHhcCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHh--
Confidence 34557788888999999999998632 322 111 01 1123333333433333333 233333322
Q ss_pred CCCCccccCC-CHHHHHHH-hhCchhHHHHHHHHHHHH-HHHHHHHHHHHHHh---hhcccCCC--CccchhHHHHHHHH
Q psy17648 183 NTGQRVRVRN-SYVSIASE-CFGPVWGARAVNLAQMIE-LLMTCILYVVVCGD---LMVGSFPD--GAIDTRSWMMLIGI 254 (530)
Q Consensus 183 ~~g~~~~~~~-~y~~l~~~-~~G~~~g~~~~~i~~~i~-~~~~~~~y~i~~~~---~l~~~~~~--~~~~~~~~~~i~~~ 254 (530)
+.|.+...+. =|+=++++ .-|+ +|+ +++++.++. .+|.+.+.-....+ -++.++.- ........+++...
T Consensus 170 rk~~pl~iss~l~PllG~r~~~G~-~G~-~IDilav~atv~GvatSLGlg~~Qi~~Gl~~lfGi~~~~~~~qi~ii~vit 247 (539)
T 4ain_A 170 RVGRKQLLSSAFVPLIGEKGAEGW-LGK-LIDILAIIATVFGTACSLGLGALQIGAGLSAANIIEDPSDWTIVGIVSVLT 247 (539)
T ss_dssp CTCCCSCTTGGGHHHHHHHHTTSH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCCSTTTTTHHHHHHH
T ss_pred cCCCCCcHHHHhHhhcCCCccCCc-chh-hhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHH
Confidence 2233322222 25666766 6777 554 666655544 55555544433333 34444431 12223333333333
Q ss_pred HHHhhhhc----ccchhhhHHHHHH
Q psy17648 255 FLIPLGFL----KSLHHVSMLSFWC 275 (530)
Q Consensus 255 ~~~pl~~~----~~l~~l~~~s~~~ 275 (530)
+++-++.. |.+|.++.++...
T Consensus 248 ~i~~~Sa~sGl~kGIk~LS~~N~~L 272 (539)
T 4ain_A 248 LAFIFSAISGVGKGIQYLSNANMVL 272 (539)
T ss_dssp HHHHHHHHC---CCHHHHGGGHCCC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444444 4566666665443
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=22.61 E-value=6.2e+02 Score=25.72 Aligned_cols=26 Identities=0% Similarity=-0.045 Sum_probs=21.1
Q ss_pred CCCCccHHHHHHHHHhhhhccccchh
Q psy17648 119 SRHKINEWQAAWNVTNAIQGMFIVSL 144 (530)
Q Consensus 119 ~~~~~s~~~~~~~l~~~~iG~GiL~l 144 (530)
.+.+.|.++=+..+..+-+|.|++.-
T Consensus 87 ~kPefs~~sW~aMlF~aGmGiGl~fw 112 (509)
T 2wsw_A 87 EKPEFSTASWIFMMFASCTSAAVLFW 112 (509)
T ss_dssp SCCSSCHHHHHHHHHHHTCCHHHHHH
T ss_pred CCCCCccchHHHHHHHHhhhhHHhhh
Confidence 55567888989999999999998653
No 10
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=15.73 E-value=3.5e+02 Score=26.36 Aligned_cols=41 Identities=7% Similarity=0.109 Sum_probs=29.4
Q ss_pred CHHHHHHHhhCchhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy17648 193 SYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLM 234 (530)
Q Consensus 193 ~y~~l~~~~~G~~~g~~~~~i~~~i~~~~~~~~y~i~~~~~l 234 (530)
...+..+..+|+ ++..++.+...+..++...+.+...+..+
T Consensus 259 ~~~~~~~~~~g~-~~~~~i~~~~~~~~~~~~~~~~~~~sR~l 299 (444)
T 3gia_A 259 ALAVAAKPFLGN-LGFLLISIGALFSISSAMNATIYGGANVA 299 (444)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred hHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888887 78888888777777777777665555444
Done!