RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17648
(530 letters)
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein.
This transmembrane region is found in many amino acid
transporters including UNC-47 and MTR. UNC-47 encodes a
vesicular amino butyric acid (GABA) transporter, (VGAT).
UNC-47 is predicted to have 10 transmembrane domains.
MTR is a N system amino acid transporter system protein
involved in methyltryptophan resistance. Other members
of this family include proline transporters and amino
acid permeases.
Length = 406
Score = 258 bits (661), Expect = 5e-81
Identities = 106/411 (25%), Positives = 188/411 (45%), Gaps = 26/411 (6%)
Query: 121 HKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWA-IFAMIGIAYICCYTGKILVECLYE 179
I+ WQA +N+ AI G ++SLP+A + G+ + ++ + I YT +LV+C
Sbjct: 1 GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60
Query: 180 IDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFP 239
+D G+R + SY + FGP G + A ++ L CI Y++ GD + F
Sbjct: 61 VDKVKGKRRK---SYGDLGYRLFGP-KGKLLILFAILVNLFGVCISYLIFAGDNLPAIFD 116
Query: 240 ----DGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHI---VINVVILGYCLL 292
I ++++ G+ IPL F+ +L +S+LS +S + ++ + + +L
Sbjct: 117 SFFDTCHISLVYFIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVL 176
Query: 293 QIGDWGWGKVKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWM---LDWSH 349
G K + + +++G+IVF++ L ++ + SKF M L +
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAI 236
Query: 350 IAAAIFKSMFGYLCFLTFQNDTQQVITNNFD-SAWFRGFVNFFLVVKALLSYPLPYYAAC 408
I + + G + +L F N+ + I N S W N LV+ LLSYPL +
Sbjct: 237 IIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIR 296
Query: 409 ELLETNYFKGGDSQFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSF 468
+++E F+ G S + + K+ ++ R +V+ T ++A+ +P + +G+
Sbjct: 297 QIVENLLFRKGASGKH-----NPKSKLLRVVIRSGLVVITYLIAISVPFLGDFLSLVGAT 351
Query: 469 TGTMLSFIWPCYFHLKLKGGSLS-----IQSVAFDCFVIFLGCLFGIIGVY 514
+G L+FI P FHLKLK + D I +G L GV
Sbjct: 352 SGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVA 402
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and
metabolism].
Length = 415
Score = 62.7 bits (153), Expect = 2e-10
Identities = 69/397 (17%), Positives = 139/397 (35%), Gaps = 37/397 (9%)
Query: 141 IVSLPFAVLRGGYWAIFAMIGIAYICCY-TGKILVECLYEIDPNTGQRVRV-RNSYVSIA 198
++ LP A GG+W ++ IA+ Y + +L+E L + S S+
Sbjct: 27 VLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEAL--------LSSPNGKASITSLV 78
Query: 199 SECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD-GAIDTRSWMMLIGIFLI 257
+ G G + L+ L + Y+V G+L+ + ++ + IF +
Sbjct: 79 EDYLGKKGG-ILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLNPLPRKLGSLIFAL 137
Query: 258 PLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGW--GKVKWTLDMENFP--- 312
L FL L +++L + + + ++ + I W + +
Sbjct: 138 VLAFLSWLGTLAVLKITSLLVFGKV-IYLVLLVVYLIPHWNPANLFALPSASQSFWKYLL 196
Query: 313 ISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMF---GYLCFLTFQN 369
+++ V VFS+ +P+L N + ++ + I + I ++ G+ F F +
Sbjct: 197 LAIPVFVFSFGFHGNIPSLV-NYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFGS 255
Query: 370 DTQQVITNNFDSAWFRGFVNFFL--VVKALLSYPLPYYAACELLETNYFKGGDSQFPSIW 427
I + ++ + +LS L +A + T++ F +
Sbjct: 256 LVFGNILAAKEQNI--SLLSALAGVINSPILSIALNIFALFAIA-TSFLGVYLGLFEGLA 312
Query: 428 HL-------DGELKVWGLMFRVA---VVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIW 477
L G K L F +L+ A+ + + L+ IG+ L FI
Sbjct: 313 DLFKKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFIK 372
Query: 478 PCYFHLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVY 514
P KL + + V+ G L +
Sbjct: 373 PRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional.
Length = 467
Score = 52.2 bits (125), Expect = 4e-07
Identities = 106/436 (24%), Positives = 180/436 (41%), Gaps = 69/436 (15%)
Query: 128 AAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDPNTGQR 187
+A+N+ ++ G IV LP A G + AMI + I T + +Y + +
Sbjct: 65 SAFNIASSTVGAGIVGLPSAANSSGL--VMAMIYLIIITAMT----IFSIYALGV-AADK 117
Query: 188 VRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSF-----PDGA 242
+R +Y +A GP WG+ V + C+ YV+ GD++ + PD
Sbjct: 118 TNIR-TYEGVARVLLGP-WGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL 175
Query: 243 IDTRSWMMLIGI----FLIPLGF---LKSLHHVSMLSFWCTMSHIVINVVILGYCL---- 291
+L + F++PL + SL +VS ++ M ++VI V+++ C+
Sbjct: 176 KQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVSTIAV-SFMVYLVI-VIVVHSCMNGLP 233
Query: 292 LQIGDWGWGKVKWT----LDMENFPIS-LGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLD 346
I + GK + N I LGV +F+Y QI + ++ +RS ++L
Sbjct: 234 ENIKNVSVGKDDNAEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMTNRSVGKFVLA 293
Query: 347 WSHIAAAI------FKSMFGYLCFLTFQNDTQQVITNNFD----SAWFRGFVNFFLVVKA 396
S IA + + FGY + F + + +D A GFV ++VK
Sbjct: 294 -STIAMGMCFTMYVLTAFFGY---MDFGRNVTGSVLLMYDPVNEPAIMVGFVG--VLVKL 347
Query: 397 LLSYPLPYYAACELLETNYFKGGDSQFPSIW-HLDGELKVWGLMFRVAVVLFTIMM---A 452
+SY L A L G D++ + W H +AVV +++M
Sbjct: 348 FVSYALLGMACRNALYD--VIGWDARKVAFWKHC------------IAVVTLSVVMLLCG 393
Query: 453 VFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSLSIQSVA-FDCFVIFLGCLFGII 511
+FIP ++GF GS +G +L FI P + G + Q V F ++ + G+I
Sbjct: 394 LFIPKINTVLGFAGSISGGLLGFILPALLF--MYSGGFTWQKVGPFYYISTYVVLITGVI 451
Query: 512 GVYDSGSAMIQAFEIG 527
+ A I +G
Sbjct: 452 AIVFGTGATIWGVTVG 467
>gnl|CDD|222193 pfam13520, AA_permease_2, Amino acid permease.
Length = 425
Score = 34.2 bits (79), Expect = 0.17
Identities = 31/210 (14%), Positives = 65/210 (30%), Gaps = 17/210 (8%)
Query: 123 INEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVECLYEIDP 182
++ A V +I G I P G ++ I + E
Sbjct: 1 LSLLSAFALVIGSIIGSGIFVTPLIASAGAAAILWGWIAALIFSLAVALVYAELSSAFPR 60
Query: 183 NTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGA 242
N G V ++N FG A + +L V L+ FPD
Sbjct: 61 NGGIYVWLKN--------AFGKPVAFIAAWFNWLAYILGLASSSSVAAQYLLSAFFPDLV 112
Query: 243 IDTRSWMMLIGIFLIPLGFL--KSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWG 300
+T + LI + + + + + + +++ ++++ L + G
Sbjct: 113 GNTWLTYGIAIAILIIFALINIRGIKESAKIQNILGIVKLLLPLILIILLGLVLALGGGF 172
Query: 301 KVKWTLDMENFP-------ISLGVIVFSYT 323
+ FP + L ++++S+
Sbjct: 173 NLLPNSWTTFFPSGWPGVFLGLLIVLWSFG 202
>gnl|CDD|187642 cd08937, DHB_DH-like_SDR_c,
1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate
dehydrogenase (DHB DH)-like, classical (c) SDR. DHB DH
(aka 1,2-dihydroxycyclohexa-3,5-diene-1-carboxylate
dehydrogenase) catalyzes the NAD-dependent conversion of
1,2-dihydroxycyclohexa-3,4-diene carboxylate to a
catechol. This subgroup also contains Pseudomonas putida
F1 CmtB, 2,3-dihydroxy-2,3-dihydro-p-cumate
dehydrogenase, the second enzyme in the pathway for
catabolism of p-cumate catabolism. This subgroup shares
the glycine-rich NAD-binding motif of the classical SDRs
and shares the same catalytic triad; however, the
upstream Asn implicated in cofactor binding or catalysis
in other SDRs is generally substituted by a Ser. SDRs
are a functionally diverse family of oxidoreductases
that have a single domain with a structurally conserved
Rossmann fold (alpha/beta folding pattern with a central
beta-sheet), an NAD(P)(H)-binding region, and a
structurally diverse C-terminal region. Classical SDRs
are typically about 250 residues long, while extended
SDRs are approximately 350 residues. Sequence identity
between different SDR enzymes are typically in the
15-30% range, but the enzymes share the Rossmann fold
NAD-binding motif and characteristic NAD-binding and
catalytic sequence patterns. These enzymes catalyze a
wide range of activities including the metabolism of
steroids, cofactors, carbohydrates, lipids, aromatic
compounds, and amino acids, and act in redox sensing.
Classical SDRs have an TGXXX[AG]XG cofactor binding
motif and a YXXXK active site motif, with the Tyr
residue of the active site motif serving as a critical
catalytic residue (Tyr-151, human
15-hydroxyprostaglandin dehydrogenase (15-PGDH)
numbering). In addition to the Tyr and Lys, there is
often an upstream Ser (Ser-138, 15-PGDH numbering)
and/or an Asn (Asn-107, 15-PGDH numbering) contributing
to the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 256
Score = 32.9 bits (75), Expect = 0.28
Identities = 18/47 (38%), Positives = 23/47 (48%)
Query: 66 QRKTDGTIEMSTMKGYGGVDECGGAKDFQASRSNTFSMGGSFDEGGG 112
QR D T++ S M YG +DE A F AS ++ G GGG
Sbjct: 207 QRIVDQTLDSSLMGRYGTIDEQVRAILFLASDEASYITGTVLPVGGG 253
>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1.
Programmed cell-death involves a set of Bcl-2 family
proteins, some of which inhibit apoptosis (Bcl-2 and
Bcl-XL) and some of which promote it (Bax and Bak).
Human Bax inhibitor, BI-1, is an evolutionarily
conserved integral membrane protein containing multiple
membrane-spanning segments predominantly localised to
intracellular membranes. It has 6-7 membrane-spanning
domains. The C termini of the mammalian BI-1 proteins
are comprised of basic amino acids resembling some
nuclear targeting sequences, but otherwise the predicted
proteins lack motifs that suggest a function. As plant
BI-1 appears to localise predominantly to the ER, we
hypothesized that plant BI-1 could also regulate cell
death triggered by ER stress. BI-1 appears to exert its
effect through an interaction with calmodulin.
Length = 205
Score = 31.8 bits (73), Expect = 0.56
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 4/95 (4%)
Query: 434 KVWGLM---FRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKGGSL 490
KV+GL+ + + ++++ + F + I+ ++K S
Sbjct: 6 KVYGLLALGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSS 65
Query: 491 SIQSVAFDCFVIFLGCLFG-IIGVYDSGSAMIQAF 524
S F + G G I+ VY +GS ++QAF
Sbjct: 66 SAALALLFLFTLLEGLTLGPILLVYTAGSIILQAF 100
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family.
Length = 393
Score = 32.3 bits (74), Expect = 0.56
Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 28/130 (21%)
Query: 138 GMFIVSLPFAVLRGGY-WAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196
GM +LP A G+ ++ +I ++ +G +L+E S+ +
Sbjct: 20 GML--ALPVATAGAGFIPSLLLLILSWFLMLASGLLLLEVY--------LWYPEGASFNT 69
Query: 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPD-GAIDTRSWMMLIGI- 254
+A + G ++ ++Y + L G+I +R + GI
Sbjct: 70 LAKDLLGKKGN------------IIAGLVYAFLLYILTYAYISGGGSILSRVIPEMFGIP 117
Query: 255 ---FLIPLGF 261
PL F
Sbjct: 118 WSARAAPLIF 127
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein. The
Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family-
tyrosine/tryptophan subfamily (TC 2.A.42.1) The HAAAP
family includes well characterized aromatic amino
acid:H+ symport permeases and hydroxy amino acid
permeases. This subfamily is specific for aromatic amino
acid transporters and includes the tyrosine permease,
TyrP, of E. coli, and the tryptophan transporters TnaB
and Mtr of E. coli [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 381
Score = 31.9 bits (73), Expect = 0.76
Identities = 19/128 (14%), Positives = 47/128 (36%), Gaps = 16/128 (12%)
Query: 138 GMFIVSLPFAVLRGGY-WAIFAMIGIAYICCYTGKILVECLYEIDPNTGQRVRVRNSYVS 196
GM +LP + + W + +I + ++ ++G +L+E S+ +
Sbjct: 14 GML--ALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVY--------LTYPGGASFNT 63
Query: 197 IASECFGPVWGARAVNLAQMIELLMTCILYVVVC--GDLMVGSFPDGAIDTRSWMMLIGI 254
IA + G + ++ ++ + Y + G ++ + S ++ I
Sbjct: 64 IAKDLLGKTG--NIIAGLSLL-FVLYILTYAYISGGGSILSRLIGEYFGFPWSARAIVLI 120
Query: 255 FLIPLGFL 262
F + G
Sbjct: 121 FTVLFGSF 128
>gnl|CDD|233089 TIGR00680, kdpA, K+-transporting ATPase, KdpA. Kdp is a high
affinity ATP-driven K+ transport system in Escherichia
coli. It is composed of three membrane-bound subunits,
KdpA, KdpB and KdpC and one small peptide, KdpF. KdpA is
the K+-transporting subunit of this complex. During
assembly of the complex, KdpA and KdpC bind to each
other. This interaction is thought to stabilize the
complex [medline:9858692]. Data indicates that KdpC
might connect the KdpA, the K+-transporting subunit, to
KdpB, the ATP-hydrolyzing (energy providing) subunit
[medline:9858692] [Transport and binding proteins,
Cations and iron carrying compounds].
Length = 563
Score = 30.6 bits (69), Expect = 2.1
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 12/68 (17%)
Query: 109 EGGGGEFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVL---------RGGYWAIFAM 159
GGG F S H N N ++ + I+ +P A+ R W I M
Sbjct: 234 TNGGGFFNINSAHPFENPT---NFANFVETVAIMVIPAALCFAFGIMAGDRRQGWLILWM 290
Query: 160 IGIAYICC 167
+ I Y
Sbjct: 291 MFIIYGIL 298
>gnl|CDD|220700 pfam10337, DUF2422, Protein of unknown function (DUF2422). This is
a family of proteins conserved in fungi. The function is
not known. This family is the C-terminal half of some
member proteins which contain the DUF2421 pfam10334
domain at their N-terminus.
Length = 438
Score = 30.7 bits (70), Expect = 2.2
Identities = 16/89 (17%), Positives = 36/89 (40%), Gaps = 12/89 (13%)
Query: 428 HLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLKLKG 487
HLD + ++FR V + ++ + IP A +G + ++S I P G
Sbjct: 10 HLD--YRSLKVVFRCWVATWVALILMQIPPSARWLGTAA-YLAAIVSVIVPP-------G 59
Query: 488 GSLS--IQSVAFDCFVIFLGCLFGIIGVY 514
++ + + + + +G+I +
Sbjct: 60 MPIAKFVLAALLLLLGVCIAWAWGVIAMK 88
>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed.
Length = 279
Score = 30.3 bits (69), Expect = 2.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Query: 437 GLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYFHLK 484
GLM +AVVL I+ +P L+GF+ +F + + YF +
Sbjct: 16 GLMAGIAVVLGAIIALGGLPLDEALLGFLTAFFASGSANALNDYFDYE 63
>gnl|CDD|182955 PRK11089, PRK11089, PTS system glucose-specific transporter
subunits IIBC; Provisional.
Length = 477
Score = 29.7 bits (67), Expect = 4.2
Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Query: 454 FIPHFAILMGFIGSFTGTMLSFIWP 478
F+P I+ G FTG +LSFIWP
Sbjct: 152 FVP---IISGLAAIFTGVVLSFIWP 173
>gnl|CDD|233936 TIGR02578, cas_TM1811_Csm1, CRISPR-associated protein Cas10/Csm1,
subtype III-A/MTUBE. The family is designated Csm2, for
CRISPR/Cas Subtype Mtube Protein 2. A typical example is
TM1811 from Thermotoga maritima. CRISPR are Clustered
Regularly Interspaced Short Palindromic Repeats. This
protein family belongs to a conserved gene cluster
regularly found near CRISPR repeats [Mobile and
extrachromosomal element functions, Other].
Length = 648
Score = 29.7 bits (67), Expect = 4.6
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 321 SYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVITNNFD 380
S + T G+ D S + D + AAI +++ YL ++D + + D
Sbjct: 182 KLWSFVPAATNGGSKPDVS----LYDHLKLTAAIASALYRYLKENNTKDDALAKLDSAID 237
Query: 381 SAWFRGFVNFFLVV 394
W F LV
Sbjct: 238 EDWNGEK--FLLVS 249
>gnl|CDD|227017 COG4671, COG4671, Predicted glycosyl transferase [General function
prediction only].
Length = 400
Score = 29.3 bits (66), Expect = 6.2
Identities = 9/61 (14%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 368 QNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDSQFPSIW 427
+ +T ++I +D G +F+ + +P ++ T + + P
Sbjct: 157 RAETVRLINRFYDLVLVYGDPDFYDPLT---EFPFAPAIRAKMRYTGFVQRSLPHLPLPP 213
Query: 428 H 428
H
Sbjct: 214 H 214
>gnl|CDD|183772 PRK12823, benD, 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate
dehydrogenase; Provisional.
Length = 260
Score = 28.4 bits (64), Expect = 8.6
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
Query: 43 RNTEGESATGQSGEHIHFGNNIQQRKTDGTIEMSTMKGYGGVDECGGAKDFQAS 96
RN +S ++ Q+ D T++ S MK YG +DE A F AS
Sbjct: 197 RNAAPQSEQEKAW---------YQQIVDQTLDSSLMKRYGTIDEQVAAILFLAS 241
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.143 0.468
Gapped
Lambda K H
0.267 0.0694 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,582,658
Number of extensions: 2740824
Number of successful extensions: 3645
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3603
Number of HSP's successfully gapped: 116
Length of query: 530
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 429
Effective length of database: 6,457,848
Effective search space: 2770416792
Effective search space used: 2770416792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.3 bits)