RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17648
(530 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 0.002
Identities = 45/275 (16%), Positives = 81/275 (29%), Gaps = 74/275 (26%)
Query: 115 FGERSRHKINEWQ-----AAWNVTNAIQGMFIVSLPFAVLRGGYW--AIF---AMIGIAY 164
E R + W +T I+ + L A R + ++F A I
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIE-SSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 165 ICCY--------TGKILVEC----LYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVN 212
+ ++ + L E P + + + Y+ + + N
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES-TISIPSIYLELKVKL---------EN 441
Query: 213 LAQMIELLMTCILYVV---VCGDLMVGSFPDG------------AIDTRSWMMLIGIFLI 257
+ ++ Y + D ++ + D + +FL
Sbjct: 442 EYALHRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL- 498
Query: 258 PLGFLKS-LHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGKVKWTLDMENFPISLG 316
FL+ + H S W I +N L Q+ + + D + L
Sbjct: 499 DFRFLEQKIRHDSTA--WNASGSI-LNT------LQQLKFYK----PYICDNDPKYERL- 544
Query: 317 VIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIA 351
V + FLP +E NLI SK+ D IA
Sbjct: 545 --VNAILD--FLPKIEENLI-CSKY---TDLLRIA 571
Score = 29.1 bits (64), Expect = 5.1
Identities = 25/162 (15%), Positives = 49/162 (30%), Gaps = 55/162 (33%)
Query: 61 GNNIQQRKTDGTIE------MSTMKGYGGVDECGGAKDFQASRSNTFSMGGSFDEGGGGE 114
+ Q+ + + MS +K + + R ++ F +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIK-TEQRQPSMMTRMYIEQRDRLYNDNQVFAKY---- 129
Query: 115 FGERSR----HKINEW----QAAWNVTNAIQGM-----------------FIVSLPFAVL 149
SR K+ + + A NV I G+ + F +
Sbjct: 130 --NVSRLQPYLKLRQALLELRPAKNVL--IDGVLGSGKTWVALDVCLSYKVQCKMDFKI- 184
Query: 150 RGGYWAIFAMIGIAYICCYTGKILVECL----YEIDPNTGQR 187
+W + + C + + ++E L Y+IDPN R
Sbjct: 185 ---FW-----LNLKN--CNSPETVLEMLQKLLYQIDPNWTSR 216
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.65
Identities = 28/152 (18%), Positives = 45/152 (29%), Gaps = 49/152 (32%)
Query: 299 WGKVKWTLDMENFPISLGVIVFSY-TSQIFLPTLE-GNLI----DRSKFDWMLDWSHIAA 352
W + + + S+ IV + + E G I F+ ++D
Sbjct: 1646 WNRADNHF-KDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTE 1704
Query: 353 AIFKSMFGYLCFLTFQ------NDTQ--QVITNNFDSAWFRGFVNFFLVVKALL--SYPL 402
IFK + + TF+ + TQ Q AL
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQP---------------------ALTLME--- 1740
Query: 403 PYYAACELLETNYFKGGDSQFP--SIWHLDGE 432
AA E L++ D+ F S+ GE
Sbjct: 1741 --KAAFEDLKSKGLIPADATFAGHSL----GE 1766
Score = 31.9 bits (72), Expect = 0.66
Identities = 18/116 (15%), Positives = 37/116 (31%), Gaps = 41/116 (35%)
Query: 361 YLCFLTFQNDTQQVITNNFDS---AWFRGFVNFFL-------VVKALLSY---PLP---- 403
+L +++ + +V FD F N +L + LL L
Sbjct: 64 FLGYVSSLVEPSKV--GQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKE 121
Query: 404 ----YYAACELLETNYFKGGDSQ-FPSIWHLDGELKVWGLMFRVAVVLFTIMMAVF 454
Y A + + + K +S F ++ +G ++ +A+F
Sbjct: 122 LIKNYITARIMAKRPFDKKSNSALFRAV--GEGNAQL---------------VAIF 160
Score = 28.9 bits (64), Expect = 6.4
Identities = 42/247 (17%), Positives = 75/247 (30%), Gaps = 88/247 (35%)
Query: 58 IHFGNNIQQRKTDGTIEMSTMKGYGGVDECGGAKDFQASRSNTFSMGGSFDEGGGGEFGE 117
IHFG +R + M G + K F+ ++ S ++G
Sbjct: 1674 IHFGGEKGKRIRENYSAMIFETIVDGKLKT--EKIFKEINEHSTSYTFRSEKG------- 1724
Query: 118 RSRHKINEWQAAWNVT-NAIQ-GMFIVSL-PFAVLR--GGY--WAIFAMIG------IAY 164
++ T Q + ++ F L+ G A FA G A
Sbjct: 1725 ----LLSA-------TQFT-QPALTLMEKAAFEDLKSKGLIPADATFA--GHSLGEYAA- 1769
Query: 165 ICCYTGKILVECLYEIDPNTGQRVRVRNSYVSIA---SECFGPVWGARAVNLAQM----- 216
+ + +E L E+ V R + +A E +G A+N ++
Sbjct: 1770 LASLADVMSIESLVEV-------VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 217 ---IELLMTCIL-----------Y------VVVCGDLMVGSFPDGAIDTRSWMMLIGIFL 256
++ ++ + Y V GDL A+DT + +
Sbjct: 1823 QEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDL-------RALDT-----VTNV-- 1868
Query: 257 IPLGFLK 263
L F+K
Sbjct: 1869 --LNFIK 1873
Score = 28.5 bits (63), Expect = 6.7
Identities = 45/241 (18%), Positives = 66/241 (27%), Gaps = 105/241 (43%)
Query: 142 VSLPFAVLRGGYWAIFAMIGIAYICCYTGKILVEC-LYEIDPNTGQRVRVRNSYVSIASE 200
+S P +IG+ + Y +V L P G+ +R SY+ A+
Sbjct: 236 ISCP-------------LIGVIQLAHY----VVTAKLLGFTP--GE---LR-SYLKGATG 272
Query: 201 CFGPVWGARAVNLAQMIELLMTCILYVVVCGDLMVGSFPDGAIDTRSWMMLIGI------ 254
+ A A+ E SF + + IG+
Sbjct: 273 HSQGLVTAVAIAETDSWE------------------SFFVSVRKAITVLFFIGVRCYEAY 314
Query: 255 ---FLIPLGFLKSLHHV-----SMLSFWCT--------------------MSHIVI---- 282
L P SL + MLS + + I
Sbjct: 315 PNTSLPPSILEDSLENNEGVPSPMLS--ISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN 372
Query: 283 ---NVVILG-----YCL---LQIGDWGWGKVK--WTLDMENFPISLGVIVFSYTSQIFLP 329
N+V+ G Y L L+ K K LD P S + FS FLP
Sbjct: 373 GAKNLVVSGPPQSLYGLNLTLR-------KAKAPSGLDQSRIPFSERKLKFSNR---FLP 422
Query: 330 T 330
Sbjct: 423 V 423
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP,
cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP;
2.00A {Saccharomyces cerevisiae}
Length = 447
Score = 28.1 bits (63), Expect = 7.4
Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 16/54 (29%)
Query: 317 VIVF-----SYTSQIFL-----------PTLEGNLIDRSKFDWMLDWSHIAAAI 354
VIVF Y I L P E + + +W +D+ AI
Sbjct: 145 VIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAI 198
>2ckw_A RNA-directed RNA polymerase; hydrolase, nucleotide-binding,
nucleotidyltransferase, covalent protein-RNA linkage,
RNA elongation; 2.3A {Sapporo virus} PDB: 2uuw_A 2wk4_A
2uut_A
Length = 515
Score = 28.2 bits (62), Expect = 8.8
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 8/71 (11%)
Query: 312 PISLGVIVFSYTSQIFLPTLEGNLI---DRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQ 368
P+++G+ + S Q+ +L+G ++ D SK+D S A+ + L
Sbjct: 214 PVAVGINMDSVQMQVMNDSLKGGVLYCLDYSKWD-----STQNPAVTAASLAILERFAEP 268
Query: 369 NDTQQVITNNF 379
+
Sbjct: 269 HPIVSCAIEAL 279
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.143 0.468
Gapped
Lambda K H
0.267 0.0536 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,524,873
Number of extensions: 518689
Number of successful extensions: 1150
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1147
Number of HSP's successfully gapped: 18
Length of query: 530
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 432
Effective length of database: 3,965,535
Effective search space: 1713111120
Effective search space used: 1713111120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.3 bits)