RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17648
         (530 letters)



>d1vrga1 c.14.1.4 (A:1-251) Propionyl-CoA carboxylase complex B
           subunit, PccB {Thermotoga maritima [TaxId: 2336]}
          Length = 251

 Score = 30.9 bits (69), Expect = 0.32
 Identities = 12/82 (14%), Positives = 26/82 (31%)

Query: 107 FDEGGGGEFGERSRHKINEWQAAWNVTNAIQGMFIVSLPFAVLRGGYWAIFAMIGIAYIC 166
            ++ GG    E         +     T A   +  +++      GG     A+     + 
Sbjct: 127 INDSGGARIQEGVDALAGYGEIFLRNTLASGVVPQITVIAGPCAGGAVYSPALTDFIVMV 186

Query: 167 CYTGKILVECLYEIDPNTGQRV 188
             T ++ +     I   TG+ +
Sbjct: 187 DQTARMFITGPNVIKAVTGEEI 208


>d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga
           maritima [TaxId: 2336]}
          Length = 280

 Score = 28.1 bits (61), Expect = 2.6
 Identities = 17/138 (12%), Positives = 37/138 (26%), Gaps = 9/138 (6%)

Query: 171 KILVECLYEIDPNTGQRVRVRNSYVSIASECFGPVWGARAVNLAQMIELLMTCILYV--V 228
           +   E + +  P  G+ +RVR     ++ +  G   G  A++    +EL+    L    V
Sbjct: 18  QFFPEQIMKDLPLYGKMLRVR--LSILSFKNRGVEIGEDAISSLAALELVHLASLLHDDV 75

Query: 229 VCGDLMVGSFPDGAIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILG 288
           + G                   +          +      ++              VI  
Sbjct: 76  IDGARFRRGKETINFMYGDKAAVAAGD-----LVLVSAFHTVEEIGNNKLRRAFLNVIGK 130

Query: 289 YCLLQIGDWGWGKVKWTL 306
               ++ +        T 
Sbjct: 131 MSEAELIEQLSRYKPITK 148


>d1tzva_ a.79.1.1 (A:) Antitermination factor NusB {Thermotoga
           maritima [TaxId: 2336]}
          Length = 141

 Score = 27.1 bits (59), Expect = 3.6
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 6/65 (9%)

Query: 334 NLIDRSKFDWMLDWSHIAAAIFKSMFGYLCFLTFQNDTQQVI------TNNFDSAWFRGF 387
           +LI R    W L+   +       +  Y          +  I         + +     F
Sbjct: 63  DLISRYLEKWSLNRLSVVDRNVLRLATYELLFEKDIPIEVTIDEAIEIAKRYGTENSGKF 122

Query: 388 VNFFL 392
           VN  L
Sbjct: 123 VNGIL 127


>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score = 26.7 bits (58), Expect = 8.6
 Identities = 35/289 (12%), Positives = 70/289 (24%), Gaps = 13/289 (4%)

Query: 242 AIDTRSWMMLIGIFLIPLGFLKSLHHVSMLSFWCTMSHIVINVVILGYCLLQIGDWGWGK 301
           +I       L     +P G    L           ++  +   +++      I  +    
Sbjct: 135 SILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIERFAKIA 194

Query: 302 VKWTLDMENFPISLGVIVFSYTSQIFLPTLEGNLIDRSKFDWMLDWSHIAAAIFKSMFGY 361
           +     +  F +              L T  G   D   F W  D+  +           
Sbjct: 195 MPTLFILAVFLVIR---------VFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVG 245

Query: 362 LCFLTFQNDTQQVITNNFDSAWFRGFVNFFLVVKALLSYPLPYYAACELLETNYFKGGDS 421
             F T       +IT        +  V   L    L             +       G +
Sbjct: 246 QIFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVA 305

Query: 422 QFPSIWHLDGELKVWGLMFRVAVVLFTIMMAVFIPHFAILMGFIGSFTGTMLSFIWPCYF 481
              +I         + L F     +F+         F        +   + ++ + P   
Sbjct: 306 NAVAIAKAGA----FNLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIA 361

Query: 482 HLKLKGGSLSIQSVAFDCFVIFLGCLFGIIGVYDSGSAMIQAFEIGLPF 530
            L+ +       +V +   ++F      +            A  IG+ F
Sbjct: 362 FLEDELKLSRKHAVLWTAAIVFFSAHLVMFLNKSLDEMDFWAGTIGVVF 410


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.143    0.468 

Gapped
Lambda     K      H
   0.267   0.0442    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,121,017
Number of extensions: 99892
Number of successful extensions: 272
Number of sequences better than 10.0: 1
Number of HSP's gapped: 271
Number of HSP's successfully gapped: 22
Length of query: 530
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 440
Effective length of database: 1,171,896
Effective search space: 515634240
Effective search space used: 515634240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.7 bits)