BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17649
(457 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XMC|A Chain A, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMC|B Chain B, C323m Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/435 (35%), Positives = 243/435 (55%), Gaps = 12/435 (2%)
Query: 30 LSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQ 89
L+ + +TF+ + LPSLPVP L+ +L+KY++SVKPFA ++E + + ++F+ G G+
Sbjct: 5 LTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGK 64
Query: 90 ELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
LH+ LL++A ++NWL WW AYL R N GP P E G +E
Sbjct: 65 RLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLER 124
Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTE 209
S+ + +W LLR+EKL P +G+ P M+ F+ F+T ++PG DSI+NYFKTE
Sbjct: 125 GSMMLWHNLNYWQLLRREKL-PVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTE 183
Query: 210 AEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSIL-QAXXXXXXXXIAALSC 268
+EG CP+H+ V C G + + LH+ +T E Q I + IAAL+
Sbjct: 184 SEGHCPTHIAVLCRGRAFVFDVLHEGCL-ITPPELLRQLTYIHKKCSNEPVGPSIAALTS 242
Query: 269 EPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTND----SEICQQLISNDY 324
E R++WA+ R Y++ +N L+E I +++F S++++SP S++ + L+ D
Sbjct: 243 EERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDP 302
Query: 325 ANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGG 384
+ R+ DKS ++ F NG G C+H P+D MV V YV + E + VR
Sbjct: 303 SVRWGDKSYNLISFANGIFGMCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVR-- 360
Query: 385 LEAPVP--LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSF 442
+ P+P L F D++I ++S+AKA+ + ++ FT FGK E LHPD+F
Sbjct: 361 -DIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTSFGKKLTKEEALHPDTF 419
Query: 443 VQMALQLAYYTIHNK 457
+Q+ALQLAYY +H +
Sbjct: 420 IQLALQLAYYRLHGR 434
>pdb|1XMD|A Chain A, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
pdb|1XMD|B Chain B, M335v Mutant Structure Of Mouse Carnitine
Octanoyltransferase
Length = 612
Score = 283 bits (724), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 156/435 (35%), Positives = 243/435 (55%), Gaps = 12/435 (2%)
Query: 30 LSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQ 89
L+ + +TF+ + LPSLPVP L+ +L+KY++SVKPFA ++E + + ++F+ G G+
Sbjct: 5 LTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGK 64
Query: 90 ELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
LH+ LL++A ++NWL WW AYL R N GP P E G +E
Sbjct: 65 RLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLER 124
Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTE 209
S+ + +W LLR+EKL P +G+ P M+ F+ F+T ++PG DSI+NYFKTE
Sbjct: 125 GSMMLWHNLNYWQLLRREKL-PVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTE 183
Query: 210 AEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSIL-QAXXXXXXXXIAALSC 268
+EG CP+H+ V C G + + LH+ +T E Q I + IAAL+
Sbjct: 184 SEGHCPTHIAVLCRGRAFVFDVLHEGCL-ITPPELLRQLTYIHKKCSNEPVGPSIAALTS 242
Query: 269 EPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTND----SEICQQLISNDY 324
E R++WA+ R Y++ +N L+E I +++F S++++SP S++ + L+ D
Sbjct: 243 EERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDP 302
Query: 325 ANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGG 384
+ R+ DKS ++ F NG G C+H P+D MV V YV + E + VR
Sbjct: 303 SVRWGDKSYNLISFANGIFGCCCDHAPYDAMVVVNIAHYVDERVLETEGRWKGSEKVR-- 360
Query: 385 LEAPVP--LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSF 442
+ P+P L F D++I ++S+AKA+ + ++ FT FGK E LHPD+F
Sbjct: 361 -DIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTSFGKKLTKEEALHPDTF 419
Query: 443 VQMALQLAYYTIHNK 457
+Q+ALQLAYY +H +
Sbjct: 420 IQLALQLAYYRLHGR 434
>pdb|1XL7|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
pdb|1XL7|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
pdb|1XL8|A Chain A, Crystal Structure Of Mouse Carnitine Octanoyltransferase
In Complex With Octanoylcarnitine
pdb|1XL8|B Chain B, Crystal Structure Of Mouse Carnitine Octanoyltransferase
In Complex With Octanoylcarnitine
Length = 612
Score = 275 bits (702), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 239/435 (54%), Gaps = 12/435 (2%)
Query: 30 LSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQ 89
L+ + +TF+ + LPSLPVP L+ +L+KY++SVKPFA ++E + + ++F+ G G+
Sbjct: 5 LTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGK 64
Query: 90 ELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
LH+ LL++A ++NWL WW AYL R N GP P E G +E
Sbjct: 65 RLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLER 124
Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTE 209
S + +W LLR+EKL P +G+ P + F+ F+T ++PG DSI NYFKTE
Sbjct: 125 GSXXLWHNLNYWQLLRREKL-PVHKSGNTPLDXNQFRXLFSTCKVPGITRDSIXNYFKTE 183
Query: 210 AEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSIL-QAXXXXXXXXIAALSC 268
+EG CP+H+ V C G + + LH+ +T E Q I + IAAL+
Sbjct: 184 SEGHCPTHIAVLCRGRAFVFDVLHEGCL-ITPPELLRQLTYIHKKCSNEPVGPSIAALTS 242
Query: 269 EPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTND----SEICQQLISNDY 324
E R++WA+ R Y++ +N L+E I +++F S++++SP S++ + L+ D
Sbjct: 243 EERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEXLLGGDP 302
Query: 325 ANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGG 384
+ R+ DKS ++ F NG G C+H P+D V V YV + E + VR
Sbjct: 303 SVRWGDKSYNLISFANGIFGCCCDHAPYDAXVXVNIAHYVDERVLETEGRWKGSEKVR-- 360
Query: 385 LEAPVP--LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSF 442
+ P+P L F D++I ++S+AKA+ + ++ FT FGK E LHPD+F
Sbjct: 361 -DIPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTSFGKKLTKEEALHPDTF 419
Query: 443 VQMALQLAYYTIHNK 457
+Q+ALQLAYY +H +
Sbjct: 420 IQLALQLAYYRLHGR 434
>pdb|2H3P|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3P|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Acetyl-Coa
pdb|2H3U|A Chain A, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
pdb|2H3U|B Chain B, Crystal Structure Of Murine Carnitine Acetyltransferase In
Complex With Carnitine And Coa
Length = 599
Score = 179 bits (454), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/433 (25%), Positives = 215/433 (49%), Gaps = 32/433 (7%)
Query: 41 NDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKN--GIGQELHKSLLKK 98
+ + LP LPVPPL +L+ Y+++++P ++EE + + L EF+ G+G+ L K L ++
Sbjct: 5 HQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERR 64
Query: 99 ASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELI 158
A + +NWLS WW K AYL R ++ + + P ++ G + A+ ++
Sbjct: 65 AKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQG---QLRFAAKLIEGVL 121
Query: 159 KFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHV 218
F ++ E L P G +P CM+ + + ++ R+PG + DS+VN+ K++ P+H+
Sbjct: 122 DFKSMIDNETL-PVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRP---PTHI 177
Query: 219 IVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQAXXXXXXXXIAALSCEPRSKWAENR 278
V N ++++ H D TPLT + Q I + + L+ R+ WA+
Sbjct: 178 TVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAY 237
Query: 279 SYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISN----------DYANRY 328
+ ++ K N++ + I ++F+V LD P ++ + ++ + NR+
Sbjct: 238 NNLI-KDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRW 296
Query: 329 ADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAP 388
DK++ + ++G+ G + EH +G +++L +++ ++ + P
Sbjct: 297 FDKTLQFIVAEDGSCGMVYEHAAAEGPP--------IVALVDHVMEYTKKPELVRSPMVP 348
Query: 389 VP----LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQ 444
+P L F+ +I ++ +AK I ++ + F FGK KL PD+F+Q
Sbjct: 349 LPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQ 408
Query: 445 MALQLAYYTIHNK 457
+ALQLAYY I+ +
Sbjct: 409 VALQLAYYRIYGQ 421
>pdb|1T7N|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Crat
pdb|1T7O|A Chain A, Crystal Structure Of The M564g Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine
Length = 618
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 216/439 (49%), Gaps = 32/439 (7%)
Query: 35 KAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFK--NGIGQELH 92
+ + + LP LPVPPL +L+ Y+++++P ++EE + + L EF+ G+G+ L
Sbjct: 17 RGSHMAHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQ 76
Query: 93 KSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASL 152
K L ++A + +NWLS WW K AYL R ++ + + P ++ G + A+
Sbjct: 77 KGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQG---QLRFAAK 133
Query: 153 FCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEG 212
++ F ++ E L P G +P CM+ + + ++ R+PG + DS+VN+ K++
Sbjct: 134 LIEGVLDFKSMIDNETL-PVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRP- 191
Query: 213 SCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQAXXXXXXXXIAALSCEPRS 272
P+H+ V N ++++ H D TPLT + Q I + + L+ R+
Sbjct: 192 --PTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRN 249
Query: 273 KWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISN---------- 322
WA+ + ++ K N++ + I ++F+V LD P ++ + ++
Sbjct: 250 TWAKAYNNLI-KDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKF 308
Query: 323 DYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVR 382
+ NR+ DK++ + ++G+ G + EH +G +++L +++ ++ +
Sbjct: 309 NSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPP--------IVALVDHVMEYTKKPELV 360
Query: 383 GGLEAPVP----LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLH 438
P+P L F+ +I ++ +AK I ++ + F FGK KL
Sbjct: 361 RSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLS 420
Query: 439 PDSFVQMALQLAYYTIHNK 457
PD+F+Q+ALQLAYY I+ +
Sbjct: 421 PDAFIQVALQLAYYRIYGQ 439
>pdb|1T7Q|A Chain A, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
pdb|1T7Q|B Chain B, Crystal Structure Of The F565a Mutant Of Murine Carnitine
Acetyltransferase In Complex With Carnitine And Coa
Length = 618
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/439 (25%), Positives = 216/439 (49%), Gaps = 32/439 (7%)
Query: 35 KAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKN--GIGQELH 92
+ + + LP LPVPPL +L+ Y+++++P ++EE + + L EF+ G+G+ L
Sbjct: 17 RGSHMAHQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQ 76
Query: 93 KSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASL 152
K L ++A + +NWLS WW K AYL R ++ + + P ++ G + A+
Sbjct: 77 KGLERRAKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQG---QLRFAAK 133
Query: 153 FCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEG 212
++ F ++ E L P G +P CM+ + + ++ R+PG + DS+VN+ K++
Sbjct: 134 LIEGVLDFKSMIDNETL-PVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRP- 191
Query: 213 SCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQAXXXXXXXXIAALSCEPRS 272
P+H+ V N ++++ H D TPLT + Q I + + L+ R+
Sbjct: 192 --PTHITVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRN 249
Query: 273 KWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISN---------- 322
WA+ + ++ K N++ + I ++F+V LD P ++ + ++
Sbjct: 250 TWAKAYNNLI-KDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKF 308
Query: 323 DYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVR 382
+ NR+ DK++ + ++G+ G + EH +G +++L +++ ++ +
Sbjct: 309 NSGNRWFDKTLQFIVAEDGSCGMVYEHAAAEGPP--------IVALVDHVMEYTKKPELV 360
Query: 383 GGLEAPVP----LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLH 438
P+P L F+ +I ++ +AK I ++ + F FGK KL
Sbjct: 361 RSPMVPLPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLS 420
Query: 439 PDSFVQMALQLAYYTIHNK 457
PD+F+Q+ALQLAYY I+ +
Sbjct: 421 PDAFIQVALQLAYYRIYGQ 439
>pdb|2H3W|A Chain A, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
pdb|2H3W|B Chain B, Crystal Structure Of The S554aM564G MUTANT OF MURINE
Carnitine Acetyltransferase In Complex With
Hexanoylcarnitine And Coa
Length = 599
Score = 179 bits (453), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 112/433 (25%), Positives = 215/433 (49%), Gaps = 32/433 (7%)
Query: 41 NDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKN--GIGQELHKSLLKK 98
+ + LP LPVPPL +L+ Y+++++P ++EE + + L EF+ G+G+ L K L ++
Sbjct: 5 HQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERR 64
Query: 99 ASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELI 158
A + +NWLS WW K AYL R ++ + + P ++ G + A+ ++
Sbjct: 65 AKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQG---QLRFAAKLIEGVL 121
Query: 159 KFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHV 218
F ++ E L P G +P CM+ + + ++ R+PG + DS+VN+ K++ P+H+
Sbjct: 122 DFKSMIDNETL-PVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRP---PTHI 177
Query: 219 IVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQAXXXXXXXXIAALSCEPRSKWAENR 278
V N ++++ H D TPLT + Q I + + L+ R+ WA+
Sbjct: 178 TVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAY 237
Query: 279 SYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISN----------DYANRY 328
+ ++ K N++ + I ++F+V LD P ++ + ++ + NR+
Sbjct: 238 NNLI-KDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRW 296
Query: 329 ADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAP 388
DK++ + ++G+ G + EH +G +++L +++ ++ + P
Sbjct: 297 FDKTLQFIVAEDGSCGMVYEHAAAEGPP--------IVALVDHVMEYTKKPELVRSPMVP 348
Query: 389 VP----LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQ 444
+P L F+ +I ++ +AK I ++ + F FGK KL PD+F+Q
Sbjct: 349 LPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQ 408
Query: 445 MALQLAYYTIHNK 457
+ALQLAYY I+ +
Sbjct: 409 VALQLAYYRIYGQ 421
>pdb|1NDF|A Chain A, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDF|B Chain B, Carnitine Acetyltransferase In Complex With Carnitine
pdb|1NDI|A Chain A, Carnitine Acetyltransferase In Complex With Coa
pdb|1NDI|B Chain B, Carnitine Acetyltransferase In Complex With Coa
Length = 596
Score = 179 bits (453), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 112/433 (25%), Positives = 215/433 (49%), Gaps = 32/433 (7%)
Query: 41 NDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKN--GIGQELHKSLLKK 98
+ + LP LPVPPL +L+ Y+++++P ++EE + + L EF+ G+G+ L K L ++
Sbjct: 2 HQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERR 61
Query: 99 ASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELI 158
A + +NWLS WW K AYL R ++ + + P ++ G + A+ ++
Sbjct: 62 AKKMENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQG---QLRFAAKLIEGVL 118
Query: 159 KFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHV 218
F ++ E L P G +P CM+ + + ++ R+PG + DS+VN+ K++ P+H+
Sbjct: 119 DFKSMIDNETL-PVEFLGGQPLCMNQYYQILSSCRVPGPKQDSVVNFLKSKRP---PTHI 174
Query: 219 IVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQAXXXXXXXXIAALSCEPRSKWAENR 278
V N ++++ H D TPLT + Q I + + L+ R+ WA+
Sbjct: 175 TVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAY 234
Query: 279 SYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISN----------DYANRY 328
+ ++ K N++ + I ++F+V LD P ++ + ++ + NR+
Sbjct: 235 NNLI-KDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQMLHGGGSKFNSGNRW 293
Query: 329 ADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAP 388
DK++ + ++G+ G + EH +G +++L +++ ++ + P
Sbjct: 294 FDKTLQFIVAEDGSCGMVYEHAAAEGPP--------IVALVDHVMEYTKKPELVRSPMVP 345
Query: 389 VP----LEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQ 444
+P L F+ +I ++ +AK I ++ + F FGK KL PD+F+Q
Sbjct: 346 LPMPKKLRFNITPEIKNDIEKAKQNLSIMIQDLDIMMLTFHHFGKDFPKSEKLSPDAFIQ 405
Query: 445 MALQLAYYTIHNK 457
+ALQLAYY I+ +
Sbjct: 406 VALQLAYYRIYGQ 418
>pdb|1NM8|A Chain A, Structure Of Human Carnitine Acetyltransferase: Molecular
Basis For Fatty Acyl Transfer
pdb|1S5O|A Chain A, Structural And Mutational Characterization Of L-Carnitine
Binding To Human Carnitine Acetyltransferase
Length = 616
Score = 168 bits (426), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 111/418 (26%), Positives = 203/418 (48%), Gaps = 32/418 (7%)
Query: 56 TLEKYIQSVKPFATQEELTNVQNLAKEFK--NGIGQELHKSLLKKASEEKNWLSGWWEKY 113
+L+ Y+++++P ++EE + + L EF+ G+G+ L K L ++A + +NWLS WW K
Sbjct: 25 SLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRARKTENWLSEWWLKT 84
Query: 114 AYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQL 173
AYL R ++ + + P ++ G + A+ ++ F ++ E L P
Sbjct: 85 AYLQYRQPVVIYSSPGVMLPKQDFVDLQG---QLRFAAKLIEGVLDFKVMIDNETL-PVE 140
Query: 174 GTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALH 233
G KP CM+ + + ++ R+PG + D++ N+ KT+ P+H+ V N ++++ H
Sbjct: 141 YLGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTKKP---PTHITVVHNYQFFELDVYH 197
Query: 234 KDSTPLTVGEWKHQFNSILQAXXXXXXXXIAALSCEPRSKWAENRSYILQKSAKNKQLIE 293
D TPLT + Q I + + L+ R+ WA+ + ++ K N+ +
Sbjct: 198 SDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNTLI-KDKVNRDSVR 256
Query: 294 DIDSAMFSVSLDNTSPTNDSEICQQLISN----------DYANRYADKSVAVVFFKNGAS 343
I ++F+V LD T P ++ + ++ + NR+ DK++ + ++G+
Sbjct: 257 SIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFDKTLQFIVAEDGSC 316
Query: 344 GGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVP----LEFDTDDQI 399
G + EH +G VT YV+ + + VR + P+P L F+ +I
Sbjct: 317 GLVYEHAAAEGPPIVTLLDYVI-------EYTKKPELVRSPM-VPLPMPKKLRFNITPEI 368
Query: 400 TKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457
++ +AK I ++ F FGK KL PD+F+QMALQLAYY I+ +
Sbjct: 369 KSDIEKAKQNLSIMIQDLDITVMVFHHFGKDFPKSEKLSPDAFIQMALQLAYYRIYGQ 426
>pdb|1NDB|A Chain A, Crystal Structure Of Carnitine Acetyltransferase
pdb|1NDB|B Chain B, Crystal Structure Of Carnitine Acetyltransferase
Length = 596
Score = 167 bits (424), Expect = 8e-42, Method: Compositional matrix adjust.
Identities = 113/429 (26%), Positives = 207/429 (48%), Gaps = 24/429 (5%)
Query: 41 NDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFK--NGIGQELHKSLLKK 98
+ + LP LPVPPL +L+ Y+++++P ++EE + + L EF+ G+G+ L K L ++
Sbjct: 2 HQDALPRLPVPPLQQSLDYYLKALQPIVSEEEWAHTKQLVDEFQTSGGVGERLQKGLERR 61
Query: 99 ASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELI 158
A + +NWLS WW K AYL R ++ + + P ++ G + A+ ++
Sbjct: 62 AKKXENWLSEWWLKTAYLQFRQPVVIYSSPGVILPKQDFVDLQG---QLRFAAKLIEGVL 118
Query: 159 KFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHV 218
F + E L P G +P C + + + ++ R+PG + DS+VN+ K++ P+H+
Sbjct: 119 DFKSXIDNETL-PVEFLGGQPLCXNQYYQILSSCRVPGPKQDSVVNFLKSKRP---PTHI 174
Query: 219 IVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQAXXXXXXXXIAALSCEPRSKWAENR 278
V N ++++ H D TPLT + Q I + + L+ R+ WA+
Sbjct: 175 TVVHNYQFFELDVYHSDGTPLTSDQIFVQLEKIWNSSLQSNKEPVGILTSNHRNTWAKAY 234
Query: 279 SYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISN----------DYANRY 328
+ ++ K N++ + I ++F+V LD P ++ + ++ + NR+
Sbjct: 235 NNLI-KDKVNRESVNSIQKSIFTVCLDKQVPRVSDDVYRNHVAGQXLHGGGSKFNSGNRW 293
Query: 329 ADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAP 388
DK++ + ++G+ G + EH +G V +V E ++ L P
Sbjct: 294 FDKTLQFIVAEDGSCGXVYEHAAAEGPPIVALVDHV----XEYTKKPELVRSPXVPLPXP 349
Query: 389 VPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQ 448
L F+ +I ++ +AK I ++ F FGK KL PD+F+Q+ALQ
Sbjct: 350 KKLRFNITPEIKNDIEKAKQNLSIXIQDLDIXXLTFHHFGKDFPKSEKLSPDAFIQVALQ 409
Query: 449 LAYYTIHNK 457
LAYY I+ +
Sbjct: 410 LAYYRIYGQ 418
>pdb|2FY2|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY3|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provides Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY4|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
pdb|2FY5|A Chain A, Structures Of Ligand Bound Human Choline Acetyltransferase
Provide Insight Into Regulation Of Acetylcholine
Synthesis
Length = 612
Score = 162 bits (409), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 125/443 (28%), Positives = 215/443 (48%), Gaps = 38/443 (8%)
Query: 36 AKTFENDEK-LPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEF--KNGIGQELH 92
AKT ++E LP LPVPPL TL Y+Q ++ ++E+ Q + ++F G+G+ L
Sbjct: 3 AKTPSSEESGLPKLPVPPLQQTLATYLQCMRHLVSEEQFRKSQAIVQQFGAPGGLGETLQ 62
Query: 93 KSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKG--VEHA 150
+ LL++ + NW+S +W YL +R +L +P ++ PG + A
Sbjct: 63 QKLLERQEKTANWVSEYWLNDMYLNNRLAL-----PVNSSPAVIFARQHFPGTDDQLRFA 117
Query: 151 SLFCHELIKFWFLLRKEKLKPQLGTGD---KPFCMHTFKKFFNTARIPGEEIDSIVNYFK 207
+ ++ + LL + G +P CM + F++ R+PG D++V +
Sbjct: 118 ASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVA--Q 175
Query: 208 TEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQAXXXXXXXX--IAA 265
+ P HVIV C + ++ + + L+ G+ Q I++ I
Sbjct: 176 NSSIMPEPEHVIVACCNQFFVLDVV-INFRRLSEGDLFTQLRKIVKMASNAAARLPPIGL 234
Query: 266 LSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPT--NDSEICQQLI--- 320
L+ + RS+WAE R+ +L K + N+ ++ I+ + V LD +D+ QL+
Sbjct: 235 LTSDGRSEWAEART-VLVKDSTNRDSLDMIERCICLVCLDAPGGVELSDTHRALQLLHGG 293
Query: 321 --SNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISED 378
S + ANR+ DKS+ V ++G G +CEH+PFDG+V V ++ L +++
Sbjct: 294 GYSKNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHL-------LKHMTQP 346
Query: 379 KTVRG---GLEAPVPLEFDTDDQITKEL-SRAKAEQKISRYEISAIRKAFTGFGKAEITE 434
+ VR L AP L + +I L S A+ Q+I + + I F +GK I +
Sbjct: 347 ELVRSPMVPLPAPRRLRWKCSPEIQGHLASSAEKLQRIVK-NLDFIVYKFDNYGKTFIKK 405
Query: 435 LKLHPDSFVQMALQLAYYTIHNK 457
K PD+F+Q+ALQLA+Y +H +
Sbjct: 406 QKCSPDAFIQVALQLAFYRLHRR 428
>pdb|1T1U|A Chain A, Structural Insights And Functional Implications Of Choline
Acetyltransferase
Length = 639
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 211/444 (47%), Gaps = 37/444 (8%)
Query: 35 KAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEF--KNGIGQELH 92
KA ++E + LP LPVPPL TL Y+Q ++ +E+ Q + K F G+G+ L
Sbjct: 13 KASSWE-ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQ 71
Query: 93 KSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEY--GPGKGVEHA 150
+ LL++ + NW+S +W YL +R +L +P ++ + A
Sbjct: 72 EKLLERQEKTANWVSEYWLNDMYLNNRLALP-----VNSSPAVIFARQHFQDTNDQLRFA 126
Query: 151 SLFCHELIKFWFLLRKEKLKPQLGTGD---KPFCMHTFKKFFNTARIPGEEIDSIVNYFK 207
+ ++ + LL L G +P CM + + F++ R+PG D++V +
Sbjct: 127 ACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVA--Q 184
Query: 208 TEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ--AXXXXXXXXIAA 265
+ P HVIV C + ++ + + L+ G+ Q I++ + I
Sbjct: 185 KSSIMPEPEHVIVACCNQFFVLDVV-INFRRLSEGDLFTQLRKIVKMASNEDERLPPIGL 243
Query: 266 LSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDN--TSPTNDSEICQQLI--- 320
L+ + RS+WA+ R+ +L K + N+ ++ I+ + V LD T +D+ QL+
Sbjct: 244 LTSDGRSEWAKARTVLL-KDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGG 302
Query: 321 --SNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISED 378
S + ANR+ DKS+ V ++G G +CEH+PFDG+V V ++L + S
Sbjct: 303 GCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHM-----MTSNK 357
Query: 379 KTVRGG----LEAPVPLEFDTDDQITKEL-SRAKAEQKISRYEISAIRKAFTGFGKAEIT 433
K VR L AP L + + L S A+ Q+I + + I F +GK I
Sbjct: 358 KLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVK-NLDFIVYKFDNYGKTFIK 416
Query: 434 ELKLHPDSFVQMALQLAYYTIHNK 457
+ K PD F+Q+ALQLAYY ++ +
Sbjct: 417 KQKYSPDGFIQVALQLAYYRLYQR 440
>pdb|1Q6X|A Chain A, Crystal Structure Of Rat Choline Acetyltransferase
pdb|1Q6X|B Chain B, Crystal Structure Of Rat Choline Acetyltransferase
Length = 644
Score = 153 bits (387), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 125/444 (28%), Positives = 211/444 (47%), Gaps = 37/444 (8%)
Query: 35 KAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEF--KNGIGQELH 92
KA ++E + LP LPVPPL TL Y+Q ++ +E+ Q + K F G+G+ L
Sbjct: 14 KASSWE-ELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQ 72
Query: 93 KSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEY--GPGKGVEHA 150
+ LL++ + NW+S +W YL +R +L +P ++ + A
Sbjct: 73 EKLLERQEKTANWVSEYWLNDMYLNNRLALP-----VNSSPAVIFARQHFQDTNDQLRFA 127
Query: 151 SLFCHELIKFWFLLRKEKLKPQLGTGD---KPFCMHTFKKFFNTARIPGEEIDSIVNYFK 207
+ ++ + LL L G +P CM + + F++ R+PG D++V +
Sbjct: 128 ACLISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVA--Q 185
Query: 208 TEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ--AXXXXXXXXIAA 265
+ P HVIV C + ++ + + L+ G+ Q I++ + I
Sbjct: 186 KSSIMPEPEHVIVACCNQFFVLDVV-INFRRLSEGDLFTQLRKIVKMASNEDERLPPIGL 244
Query: 266 LSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDN--TSPTNDSEICQQLI--- 320
L+ + RS+WA+ R+ +L K + N+ ++ I+ + V LD T +D+ QL+
Sbjct: 245 LTSDGRSEWAKARTVLL-KDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGG 303
Query: 321 --SNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISED 378
S + ANR+ DKS+ V ++G G +CEH+PFDG+V V ++L + S
Sbjct: 304 GCSLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHM-----MTSNK 358
Query: 379 KTVRGG----LEAPVPLEFDTDDQITKEL-SRAKAEQKISRYEISAIRKAFTGFGKAEIT 433
K VR L AP L + + L S A+ Q+I + + I F +GK I
Sbjct: 359 KLVRADSVSELPAPRRLRWKCSPETQGHLASSAEKLQRIVK-NLDFIVYKFDNYGKTFIK 417
Query: 434 ELKLHPDSFVQMALQLAYYTIHNK 457
+ K PD F+Q+ALQLAYY ++ +
Sbjct: 418 KQKYSPDGFIQVALQLAYYRLYQR 441
>pdb|2H4T|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
pdb|2H4T|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase Ii
Length = 626
Score = 121 bits (304), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 191/450 (42%), Gaps = 52/450 (11%)
Query: 38 TFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLK 97
T + LP LP+P L+ T+++Y+ + KP + + L K F+ G+G+ELH LL
Sbjct: 12 TMHYQDSLPRLPIPKLEDTMKRYLNAQKPLLDDSQFRRTEALCKNFETGVGKELHAHLLA 71
Query: 98 KASEEKN--WLSGWWEKYAYLMSRDSLIPFYN---MFGPNPTEELGLEYGPGKGVEHASL 152
+ + K+ ++SG W YL +RDS++ +N F P+P E + + A+
Sbjct: 72 QDKQNKHTSYISGPWFD-MYLTARDSIVLNFNPFMAFNPDPKSEYNDQ------LTRATN 124
Query: 153 FCHELIKFWFLLRKEKLKPQLG------------------------------TGDKPFCM 182
++F L+ L+P++ P M
Sbjct: 125 LTVSAVRFLKTLQAGLLEPEVFHLNPSKSDTDAFKRLIRFVPPSLSWYGAYLVNAYPLDM 184
Query: 183 HTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVG 242
+ + FN+ RIP D + + T+A H++V GH Y + L +D +
Sbjct: 185 SQYFRLFNSTRIPRPNRDEL--FTDTKAR-----HLLVLRKGHFYVFDVLDQDGNIVNPL 237
Query: 243 EWKHQFNSILQAXXXXXXXXIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSV 302
E + IL +A L+ E R WAE R ++ N++ ++ +DSA+F +
Sbjct: 238 EIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFDG--NEETLKKVDSAVFCL 295
Query: 303 SLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACF 362
LD+ + + ++ D NR+ DKS ++ ++G + EH+ DG+ +
Sbjct: 296 CLDDFPMKDLIHLSHTMLHGDGTNRWFDKSFNLIVAEDGTAAVHFEHSWGDGVAVLRFFN 355
Query: 363 YVLLSLAENLATISEDKTVRGGLEAPV-PLEFDTDDQITKELSRAKAEQKISRYEISAIR 421
V + A + + A V L F+ + ++ AK + + +S
Sbjct: 356 EVFRDSTQTPAITPQSQPAATNSSASVETLSFNLSGALKAGITAAKEKFDTTVKTLSIDS 415
Query: 422 KAFTGFGKAEITELKLHPDSFVQMALQLAY 451
F GK + + +L PD+ Q+A Q+A+
Sbjct: 416 IQFQRGGKEFLKKKQLSPDAVAQLAFQMAF 445
>pdb|2FW3|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With Antidiabetic Drug St1326
pdb|2RCU|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
pdb|2RCU|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Complex With R-3-(Hexadecanoylamino)-4-
(Trimethylazaniumyl)butanoate
Length = 653
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 105/450 (23%), Positives = 191/450 (42%), Gaps = 52/450 (11%)
Query: 38 TFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLK 97
T + LP LP+P L+ T+++Y+ + KP + + L K F+ G+G+ELH LL
Sbjct: 37 TMHYQDSLPRLPIPKLEDTMKRYLNAQKPLLDDSQFRRTEALCKNFETGVGKELHAHLLA 96
Query: 98 KASEEKN--WLSGWWEKYAYLMSRDSLIPFYN---MFGPNPTEELGLEYGPGKGVEHASL 152
+ + K+ ++SG W YL +RDS++ +N F P+P E + + A+
Sbjct: 97 QDKQNKHTSYISGPWFD-MYLTARDSIVLNFNPFMAFNPDPKSEYNDQ------LTRATN 149
Query: 153 FCHELIKFWFLLRKEKLKPQLG------------------------------TGDKPFCM 182
++F L+ L+P++ P M
Sbjct: 150 LTVSAVRFLKTLQAGLLEPEVFHLNPSKSDTDAFKRLIRFVPPSLSWYGAYLVNAYPLDM 209
Query: 183 HTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVG 242
+ + FN+ RIP D + + T+A H++V GH Y + L +D +
Sbjct: 210 SQYFRLFNSTRIPRPNRDEL--FTDTKAR-----HLLVLRKGHFYVFDVLDQDGNIVNPL 262
Query: 243 EWKHQFNSILQAXXXXXXXXIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSV 302
E + IL +A L+ E R WAE R ++ N++ ++ +DSA+F +
Sbjct: 263 EIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFDG--NEETLKKVDSAVFCL 320
Query: 303 SLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACF 362
LD+ + + ++ D NR+ DKS ++ ++G + EH+ DG+ +
Sbjct: 321 CLDDFPMKDLIHLSHTMLHGDGTNRWFDKSFNLIVAEDGTAAVHFEHSWGDGVAVLRFFN 380
Query: 363 YVLLSLAENLATISEDKTVRGGLEAPV-PLEFDTDDQITKELSRAKAEQKISRYEISAIR 421
V + A + + A V L F+ + ++ AK + + +S
Sbjct: 381 EVFRDSTQTPAITPQSQPAATNSSASVETLSFNLSGALKAGITAAKEKFDTTVKTLSIDS 440
Query: 422 KAFTGFGKAEITELKLHPDSFVQMALQLAY 451
F GK + + +L PD+ Q+A Q+A+
Sbjct: 441 IQFQRGGKEFLKKKQLSPDAVAQLAFQMAF 470
>pdb|2DEB|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2DEB|B Chain B, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group C2221
pdb|2FYO|A Chain A, Crystal Structure Of Rat Carnitine Palmitoyltransferase 2
In Space Group P43212
Length = 653
Score = 114 bits (286), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 104/450 (23%), Positives = 187/450 (41%), Gaps = 52/450 (11%)
Query: 38 TFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLK 97
T + LP LP+P L+ T ++Y+ + KP + + L K F+ G+G+ELH LL
Sbjct: 37 TXHYQDSLPRLPIPKLEDTXKRYLNAQKPLLDDSQFRRTEALCKNFETGVGKELHAHLLA 96
Query: 98 KASEEKN--WLSGWWEKYAYLMSRDSLIPFYN---MFGPNPTEELGLEYGPGKGVEHASL 152
+ + K+ ++SG W YL +RDS++ +N F P+P E + + A+
Sbjct: 97 QDKQNKHTSYISGPWFD-XYLTARDSIVLNFNPFXAFNPDPKSEYNDQ------LTRATN 149
Query: 153 FCHELIKFWFLLRKEKLKPQLG------------------------------TGDKPFCM 182
++F L+ L+P++ P
Sbjct: 150 LTVSAVRFLKTLQAGLLEPEVFHLNPSKSDTDAFKRLIRFVPPSLSWYGAYLVNAYPLDX 209
Query: 183 HTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVG 242
+ + FN+ RIP D + + T+A H++V GH Y + L +D +
Sbjct: 210 SQYFRLFNSTRIPRPNRDEL--FTDTKAR-----HLLVLRKGHFYVFDVLDQDGNIVNPL 262
Query: 243 EWKHQFNSILQAXXXXXXXXIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSV 302
E + IL +A L+ E R WAE R ++ N++ ++ +DSA+F +
Sbjct: 263 EIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFDG--NEETLKKVDSAVFCL 320
Query: 303 SLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACF 362
LD+ + + + D NR+ DKS ++ ++G + EH+ DG+ +
Sbjct: 321 CLDDFPXKDLIHLSHTXLHGDGTNRWFDKSFNLIVAEDGTAAVHFEHSWGDGVAVLRFFN 380
Query: 363 YVLLSLAENLATISEDKTVRGGLEAPV-PLEFDTDDQITKELSRAKAEQKISRYEISAIR 421
V + A + + A V L F+ + ++ AK + + +S
Sbjct: 381 EVFRDSTQTPAITPQSQPAATNSSASVETLSFNLSGALKAGITAAKEKFDTTVKTLSIDS 440
Query: 422 KAFTGFGKAEITELKLHPDSFVQMALQLAY 451
F GK + + +L PD+ Q+A Q A+
Sbjct: 441 IQFQRGGKEFLKKKQLSPDAVAQLAFQXAF 470
>pdb|1KUV|A Chain A, X-Ray Crystallographic Studies Of Serotonin
N-Acetyltransferase Catalysis And Inhibition
pdb|1KUX|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
pdb|1KUY|A Chain A, X-Ray Crystallographic Studies Of Serotonin N-
Acetyltransferase Catalysis And Inhibition
Length = 207
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 112 KYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVE-HASLFCHELIK 159
+ A LM D+L+PFY FG +P + G E H SL H ++
Sbjct: 154 RRAVLMCEDALVPFYQRFGFHPAGPCAIVVGSLTFTEMHCSLRGHAALR 202
>pdb|1B6B|A Chain A, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
pdb|1B6B|B Chain B, Melatonin Biosynthesis: The Structure Of Serotonin N-
Acetyltransferase At 2.5 A Resolution Suggests A
Catalytic Mechanism
Length = 174
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 112 KYAYLMSRDSLIPFYNMFGPNPTEELGLEYG 142
+ A LM D+L+PFY FG +P + G
Sbjct: 127 RRAVLMCEDALVPFYQRFGFHPAGPCAIVVG 157
>pdb|1IB1|E Chain E, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|F Chain F, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|G Chain G, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
pdb|1IB1|H Chain H, Crystal Structure Of The 14-3-3 Zeta:serotonin N-
Acetyltransferase Complex
Length = 200
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 112 KYAYLMSRDSLIPFYNMFGPNPTEELGLEYG 142
+ A LM D+L+PFY FG +P + G
Sbjct: 153 RRAVLMCEDALVPFYQRFGFHPAGPCAIVVG 183
>pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or329
Length = 252
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 383 GGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITE-LKLHPDS 441
GG+E V L TD ++ KE +RA A I+ SAI KA G E+ + L DS
Sbjct: 170 GGVEVLVKLLTSTDSEVQKEAARALA--NIASGPTSAI-KAIVDAGGVEVLQKLLTSTDS 226
Query: 442 FVQMALQLAYYTIHN 456
VQ Q A I +
Sbjct: 227 EVQKEAQRALENIKS 241
>pdb|2ARH|A Chain A, Crystal Structure Of A Protein Of Unknown Function Aq1966
From Aquifex Aeolicus Vf5
pdb|2ARH|B Chain B, Crystal Structure Of A Protein Of Unknown Function Aq1966
From Aquifex Aeolicus Vf5
pdb|2ARH|C Chain C, Crystal Structure Of A Protein Of Unknown Function Aq1966
From Aquifex Aeolicus Vf5
Length = 203
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 61 IQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWL 106
IQ+ KP + + +++NL KEF+ IG+ + L+KK E N+L
Sbjct: 152 IQAEKPKTEEAKKRHLENLKKEFEEFIGKCEDEGLIKKVKERYNFL 197
>pdb|3GR7|A Chain A, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR7|B Chain B, Structure Of Oye From Geobacillus Kaustophilus, Hexagonal
Crystal Form
pdb|3GR8|A Chain A, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
pdb|3GR8|B Chain B, Structure Of Oye From Geobacillus Kaustophilus,
Orthorhombic Crystal Form
Length = 340
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 29/66 (43%)
Query: 367 SLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTG 426
++ LA V G + AP + FD KE+++A E+ + ++ A R G
Sbjct: 98 AIGIQLAHAGRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAG 157
Query: 427 FGKAEI 432
F EI
Sbjct: 158 FDVIEI 163
>pdb|4EUF|A Chain A, Crystal Structure Of Clostridium Acetobutulicum
Trans-2-Enoyl-Coa Reductase In Complex With Nad
Length = 418
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 376 SEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITEL 435
S KT+ G E P ++ + D+ K++S A E EI RK G E E
Sbjct: 175 SRIKTILGDFEGPT-IDVERDEITLKKVSSASIE------EIEETRKVMGGEDWQEWCEE 227
Query: 436 KLHPDSFVQMALQLAYYTI 454
L+ D F A +AY I
Sbjct: 228 LLYEDCFSDKATTIAYSYI 246
>pdb|3QAV|A Chain A, Crystal Structure Of A Glutathione S-transferase From
Antarctic Clam Laternula Elliptica
pdb|3QAW|A Chain A, Crystal Structure Of A Glutathione-s-transferase From
Antarctic Clam Laternula Elliptica In A Complex With
Glutathione
Length = 243
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 42/102 (41%), Gaps = 2/102 (1%)
Query: 12 IREFQKRXXXXXXXXXXVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQE 71
I E R V+ ++ A +EK P +P+ P D T+ + + F T
Sbjct: 69 ILELNPRGQVPTFTDGDVVVNESTAICMYLEEKYPKVPLFPSDTTIRAKVYQ-RMFETSN 127
Query: 72 ELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKY 113
TNV ++K + + LLK+ ++ + G WE Y
Sbjct: 128 ISTNVMEFV-QYKMKNKDSIDQVLLKEKKDKAHVELGHWENY 168
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,164,731
Number of Sequences: 62578
Number of extensions: 547042
Number of successful extensions: 1263
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1166
Number of HSP's gapped (non-prelim): 43
length of query: 457
length of database: 14,973,337
effective HSP length: 102
effective length of query: 355
effective length of database: 8,590,381
effective search space: 3049585255
effective search space used: 3049585255
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)