Query psy17649
Match_columns 457
No_of_seqs 150 out of 840
Neff 7.3
Searched_HMMs 46136
Date Fri Aug 16 19:27:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17649.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17649hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3717|consensus 100.0 8E-112 2E-116 856.2 39.8 413 35-457 4-431 (612)
2 PF00755 Carn_acyltransf: Chol 100.0 2E-107 5E-112 880.4 36.0 402 44-457 1-422 (591)
3 KOG3716|consensus 100.0 4E-106 8E-111 828.2 34.5 424 12-457 137-575 (764)
4 KOG3718|consensus 100.0 8.4E-97 2E-101 733.1 33.1 428 28-457 3-431 (609)
5 KOG3719|consensus 100.0 1.3E-94 2.8E-99 724.3 35.3 416 28-457 6-461 (638)
6 PF10636 hemP: Hemin uptake pr 59.0 18 0.0004 24.6 3.7 21 215-235 12-32 (38)
7 PF11486 DUF3212: Protein of u 55.8 17 0.00037 30.7 3.8 33 52-84 68-100 (120)
8 PRK10183 hypothetical protein; 44.4 36 0.00077 25.3 3.5 21 215-235 30-50 (56)
9 PF07247 AATase: Alcohol acety 41.0 54 0.0012 34.7 6.0 37 334-370 128-170 (480)
10 COG5435 Uncharacterized conser 35.5 22 0.00048 31.7 1.6 25 326-350 15-40 (147)
11 PRK10945 gene expression modul 28.5 1E+02 0.0022 24.1 4.0 31 52-82 19-49 (72)
12 PF00140 Sigma70_r1_2: Sigma-7 25.5 71 0.0015 21.4 2.4 23 54-76 1-26 (37)
13 PF02458 Transferase: Transfer 24.3 86 0.0019 32.5 4.0 37 332-368 136-174 (432)
14 PF09336 Vps4_C: Vps4 C termin 20.0 1.4E+02 0.003 22.5 3.3 30 55-84 33-62 (62)
No 1
>KOG3717|consensus
Probab=100.00 E-value=8.2e-112 Score=856.22 Aligned_cols=413 Identities=30% Similarity=0.526 Sum_probs=375.1
Q ss_pred cCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhccc-HHHHHHHHHHHhhhcccchhhhhhhh
Q psy17649 35 KAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGI-GQELHKSLLKKASEEKNWLSGWWEKY 113 (457)
Q Consensus 35 ~~~t~~~q~~LPrLPvP~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~~g~-G~~Lq~~L~~~a~~~~nwl~~~W~~~ 113 (457)
....+.+|..||+||||+|++||++||++++||+|++||++|+.++++|.... |++||++|+++++..+||+++||++.
T Consensus 4 ~~~~~~~~~~LPKlPVP~L~~TL~~yl~~~~pl~s~~ef~~tk~i~~~F~~~~gg~~LQ~~L~e~aek~~NWl~~~WL~~ 83 (612)
T KOG3717|consen 4 QGTPKAEQTALPKLPVPPLQQTLDHYLQALQPLVSEEEFARTKQLVNEFQAKGGGERLQKLLLERAEKTPNWLSEWWLKE 83 (612)
T ss_pred CCCCcccCCCCCCCCCCcHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHhhcCCchHHHHHHHHHhhcccchHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999997322 89999999999999999999999999
Q ss_pred ccccCCCCCCccccCCCCCCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcccchhhhhhhcCccc
Q psy17649 114 AYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTAR 193 (457)
Q Consensus 114 ~YL~~R~pl~~~sN~~~~~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~l~p~~~~~~~plcM~qy~~lF~t~R 193 (457)
|||.+|.|||+||| |+++++...+.+.++|+..||.||.++++|+.++++++||+ ++.++.||||+||.++|||||
T Consensus 84 aYL~~R~P~pv~ss---Pg~~fPk~~f~~~~d~l~~aA~li~gvl~f~~~id~~~lp~-e~~~~~plcM~Qy~~lf~t~R 159 (612)
T KOG3717|consen 84 AYLQYRDPVPVNSS---PGVMFPKQDFKTLEDQLRFAAKLISGVLEFKEMIDNESLPV-EKLGGQPLCMNQYYRLFSSCR 159 (612)
T ss_pred HHHhccCCccccCC---CCcccCccccccchHHHHHHHHHHHHHHHHHHHhhcCCCCH-HHhcCCcccHHHHHHHhhccc
Confidence 99999999999999 77777777777789999999999999999999999999999 999999999999999999999
Q ss_pred ccCCCCCeeEecccccCCCCCCCEEEEEECCeEEEEEEE-cCCCccCCHHHHHHHHHHHHh-ccCC-CCCCCccccCCCC
Q psy17649 194 IPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNAL-HKDSTPLTVGEWKHQFNSILQ-ASSK-SKGSGIAALSCEP 270 (457)
Q Consensus 194 iP~~~~D~l~~~~~~~~~~~~~~HIvVl~~g~~y~v~v~-~~g~~~ls~~el~~~l~~I~~-~~~~-~~~~~vg~LTa~~ 270 (457)
+||++.|+++++... -+++++||+|+||||||.|.++ .|| .++|..+|..||+.|+. +... +...|||+||+++
T Consensus 160 ~Pg~~~D~~~~~~~~--~n~e~~hV~Vi~~nqff~L~v~~~~~-~~ls~~~i~~QL~~Iv~~~~~~~~k~~piGilTsd~ 236 (612)
T KOG3717|consen 160 VPGVGQDTIVNQSKT--YNPEPEHVTVICRNQFFELDVYDSDG-KPLSEDDIFVQLEKIVSSSSQPNPKLEPVGILTSDP 236 (612)
T ss_pred CCCCCcccccccccc--cCCCCceEEEEEcCcEEEEEEEcCCC-CcccHHHHHHHHHHHHHhccCCCCCCCCeeccccCc
Confidence 999999998865222 2466899999999999999999 678 99999999999999998 4322 2335899999999
Q ss_pred hHHHHHHHHHHHhcChhhHHHHHHHHhccEEEEecCCCC-CCCh-----HHHhhhhcCCC-----CCccccccceEEEec
Q psy17649 271 RSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSP-TNDS-----EICQQLISNDY-----ANRYADKSVAVVFFK 339 (457)
Q Consensus 271 Rd~Wa~~r~~L~~~~~~N~~~L~~IesalFvv~LDd~~p-~~~~-----e~~~~~l~G~~-----~NRW~DKslq~IV~~ 339 (457)
||.||++|+.|++ +|.|+.+|++|++|+|+||||...| .... +...++|||.| .|||||||+||||+.
T Consensus 237 Rd~WAe~~~~L~k-d~~N~dsle~I~~s~f~vCLD~~~~~~~~~e~~~~e~a~~~lHGgGs~~ns~NRW~DKTiQfvV~~ 315 (612)
T KOG3717|consen 237 RDNWAEAYETLVK-DPVNRDSLETIQKSLFVVCLDATTPPPVGEEVYKTEVARQLLHGGGSKKNSGNRWYDKTLQFVVGT 315 (612)
T ss_pred hhHHHHHHHHHhc-CcccHHHHHHHhhceEEEEecCCCCCCcccchhhHHHHHHHhhCCCcccCccccchhhceEEEEeC
Confidence 9999999999999 9999999999999999999997655 2222 33445999966 899999999999999
Q ss_pred CCceeeecccCCCcchhHHHHHHHHHHHHhhccCCccCCCCCCCCCCCCeeeeccCCHHHHHHHHHHHHHHHHHhhccce
Q psy17649 340 NGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISA 419 (457)
Q Consensus 340 nG~~g~~~EHS~~DG~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~L~w~l~~~~~~~I~~a~~~~~~~~~~~~~ 419 (457)
||.+|+.+|||++||++++.|.+|+++++.+.++.......+ .+++|++|.|.++++++..|+.|.+.++++++++|+
T Consensus 316 nG~~G~~yEHS~aEG~pi~~l~d~v~~~~~~~~~~~~~~~~~--~~~~p~~L~~~~~p~i~~~i~~a~~~~d~~i~dLd~ 393 (612)
T KOG3717|consen 316 NGSCGLTYEHSPAEGIPIVQLMDYVIKYMKKLDPELIRSPSV--PLPPPKKLRFHITPEIQKRIAKAQENLDKLIQDLDI 393 (612)
T ss_pred CCceeeeeecccccCcchHHHHHHHHHHHHhcCHHhccCCCC--CCCCccccceecCHHHHHHHHHHHHHHHHHHHhhce
Confidence 999999999999999999999999999997655443222222 678999999999999999999999999999999999
Q ss_pred eeeeecccchhhhhccCCChhHHHHHHHHHHHHHHhcC
Q psy17649 420 IRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457 (457)
Q Consensus 420 ~~~~f~~fGk~~iK~~k~SPDafiQ~AlQLA~yr~~G~ 457 (457)
.++.|+.|||+|||++|+||||||||||||||||+||+
T Consensus 394 ~V~~f~~yGK~FiK~~k~SPDaFIQmalQLA~yk~h~~ 431 (612)
T KOG3717|consen 394 TVLKFNHYGKDFIKSQKLSPDAFIQMALQLAFYKLHGR 431 (612)
T ss_pred EEEEeccccccchhhhCcCchHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999996
No 2
>PF00755 Carn_acyltransf: Choline/Carnitine o-acyltransferase; InterPro: IPR000542 A number of eukaryotic acetyltransferases can, on the basis of sequence similarities, be grouped together into a family. These enzymes include: Choline o-acetyltransferase 2.3.1.6 from EC, an enzyme that catalyses the biosynthesis of the neurotransmitter acetylcholine []. Carnitine o-acetyltransferase 2.3.1.7 from EC []. Peroxisomal carnitine octanoyltransferase 2.3.1.137 from EC, a fatty acid beta-oxidation pathway enzyme which is involved in the transport of medium-chain acyl-coenzyme A's from peroxisome to mitochondria []. Mitochondrial carnitine palmitoyltransferases I and II 2.3.1.21 from EC (CPT), enzymes involved in fatty acid metabolism and transport []. Mycoplasma pneumoniae putative acetyltransferase C09_orf600. ; GO: 0016746 transferase activity, transferring acyl groups; PDB: 2DEB_B 2H4T_A 2FW3_A 2RCU_B 2FYO_A 1S5O_A 1NM8_A 1T7Q_B 2H3W_B 1NDI_B ....
Probab=100.00 E-value=2.3e-107 Score=880.37 Aligned_cols=402 Identities=34% Similarity=0.571 Sum_probs=322.2
Q ss_pred CCCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHhhhcccchhhhhhhhccccCCCC
Q psy17649 44 KLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKN--GIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDS 121 (457)
Q Consensus 44 ~LPrLPvP~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~~--g~G~~Lq~~L~~~a~~~~nwl~~~W~~~~YL~~R~p 121 (457)
+||+||||+|++||+|||+||+||+|+|||++|+++|++|+. |.|++||++|+++++..+|||+|||++++||+.|.|
T Consensus 1 ~LP~LPvP~L~~Tl~~yL~s~~pl~~~ee~~~t~~~v~~F~~~~~~g~~Lq~~L~~~~~~~~nwl~~~W~~~~Yl~~R~p 80 (591)
T PF00755_consen 1 SLPRLPVPSLEDTLDRYLESVKPLLSDEEYEETKEAVEEFLKPGGEGPKLQERLEERAKKSDNWLEDWWLDYAYLERRSP 80 (591)
T ss_dssp CS-B-----HHHHHHHHHHHHTTTS-HHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHSSSTTHHHHHHHHTTT-SST
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcccChHHHHHHHHHHHhhcccCcchhhhhhhhhcCCCCC
Confidence 699999999999999999999999999999999999999997 999999999999999999999999999999999999
Q ss_pred CCccccCCCCCCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCccccCCC-cccchhhhhhhcCcccccCCCCC
Q psy17649 122 LIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGD-KPFCMHTFKKFFNTARIPGEEID 200 (457)
Q Consensus 122 l~~~sN~~~~~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~l~p~~~~~~-~plcM~qy~~lF~t~RiP~~~~D 200 (457)
|++|+|++. .++....+..++|+.|||.+|+++++|+.+|++|+|+| +..++ .||||+||++|||+|||||+++|
T Consensus 81 l~~ns~~~~---~~~~~~~~~~~~q~~rAA~li~~~~~f~~~l~~~~l~p-~~~~~~~plcM~qy~~lF~t~RiP~~~~D 156 (591)
T PF00755_consen 81 LPINSNPGF---VFPKDDFPPDHDQLERAARLIHAALKFKRLLRRGKLPP-DVSRGGQPLCMSQYRRLFGTCRIPGKECD 156 (591)
T ss_dssp CCTCTBEEE---EEGGTTSSSHHHHHHHHHHHHHHHHHHHHHHHTT-S---CEECSSEEE--GGGGGSSSEEEE--SSS-
T ss_pred ccccccccc---cccccccccchHHHHHHHHHHHHHHHHHHHHhccccCc-eecCCCCcccchHHHHhcccccCCCCCCC
Confidence 999999752 22222233457899999999999999999999999999 98877 99999999999999999999999
Q ss_pred eeEecccccCCCCCCCEEEEEECCeEEEEEEE-cCCCccCCHHHHHHHHHHHHh-ccC-CCCCCCccccCCCChHHHHHH
Q psy17649 201 SIVNYFKTEAEGSCPSHVIVQCNGHIYKMNAL-HKDSTPLTVGEWKHQFNSILQ-ASS-KSKGSGIAALSCEPRSKWAEN 277 (457)
Q Consensus 201 ~l~~~~~~~~~~~~~~HIvVl~~g~~y~v~v~-~~g~~~ls~~el~~~l~~I~~-~~~-~~~~~~vg~LTa~~Rd~Wa~~ 277 (457)
++.+|+++ ..+||+|+||||+|+|+|+ .+| +++|+++|++||+.|++ +.. .+..++||+||+++||.||++
T Consensus 157 ~l~~~~~~-----~~~HIvVl~rG~~y~v~v~~~~g-~~~s~~eL~~~L~~I~~~~~~~~~~~~~vg~LT~~~Rd~Wa~~ 230 (591)
T PF00755_consen 157 ELVRYPPS-----KSRHIVVLCRGRFYKVDVLDEDG-RILSPSELEAQLQRILDDSEKEEPPEPPVGALTADNRDSWAEA 230 (591)
T ss_dssp EEEE-TTT-----SSTEEEEEETTEEEEEESEETTS-EB--HHHHHHHHHHHHHHHHSGGC-SS-GGGGGGS-HHHHHHH
T ss_pred cccccccc-----CCCeEEEEECCEEEEEEEEecCC-cccCHHHHHHHHHHHHhhccccccCCCCccccccCCccHHHHH
Confidence 99998543 1349999999999999999 578 99999999999999999 432 345678999999999999999
Q ss_pred HHHHHhcChhhHHHHHHHHhccEEEEecCCCCCCChHH---------HhhhhcCCCCCccccccceEEEecCCceeeecc
Q psy17649 278 RSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEI---------CQQLISNDYANRYADKSVAVVFFKNGASGGICE 348 (457)
Q Consensus 278 r~~L~~~~~~N~~~L~~IesalFvv~LDd~~p~~~~e~---------~~~~l~G~~~NRW~DKslq~IV~~nG~~g~~~E 348 (457)
|++|++ ++.|+++|+.||+|+||||||+..|....++ ...+++|+|.|||||||+|+||++||.+|+|+|
T Consensus 231 R~~L~~-~~~N~~~L~~Ie~AlFvl~LDd~~~~~~~~~~~~~~~~~~~~~~~~g~~~NRW~DKslq~iV~~nG~~g~~~E 309 (591)
T PF00755_consen 231 REELLS-DSENAESLETIESALFVLCLDDDDPPADSEEESTSALQELHRNGLHGNGSNRWFDKSLQLIVFKNGRAGLNFE 309 (591)
T ss_dssp HHHHTT-SHHHHHHHHHHHHSS-EEEEESS-SSSSSTHHHHHHHHHHHCCSTTTTTTS--TTBSEEEEEETTS-EEEEE-
T ss_pred HHHHHh-cchhHHHHHHHHhhheEEecccCCCCCChhhhhHHHHHHHhhccCCCCCCceeccccceEEEcCCCCeEEecC
Confidence 999999 6669999999999999999999855433333 122678999999999999999999999999999
Q ss_pred cCCCcchhHHHHHHHHHHHHhhccCC-----ccCCCCCCCCCCCCeeeeccCCHHHHHHHHHHHHHHHHHhhccceeeee
Q psy17649 349 HTPFDGMVNVTACFYVLLSLAENLAT-----ISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKA 423 (457)
Q Consensus 349 HS~~DG~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~~~~~~p~~L~w~l~~~~~~~I~~a~~~~~~~~~~~~~~~~~ 423 (457)
||++||+++++++++|++.+...... ..+..... ..+.|++|.|++++++...|++|++++.+.++++++.++.
T Consensus 310 HS~~DG~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~L~~~l~~~~~~~I~~a~~~~~~~~~~~~~~~~~ 388 (591)
T PF00755_consen 310 HSWADGTVVLRLVEFIYKDIEEIPASSPDSEPSGSDSVD-ELPPPEELKFNLDPELKAAIEKAEDDFDKLISDLDLRVLH 388 (591)
T ss_dssp STT--HHHHHHHHHHHHHHHHHHTSS-TTTTTSSS-C-S-SHHHSEEE-----HHHHHHHHHHHHHHHHHHHHEEEEEEE
T ss_pred CCCchhHHHHHHHHhhhHHHHhccccccccccCCCCccC-CCCCCEEEEeeeCHHHHHHHHHHHHHHHHhcccceeeeee
Confidence 99999999999999999776443322 11111111 4567999999999999999999999999999999999999
Q ss_pred ecccchhhhhccCCChhHHHHHHHHHHHHHHhcC
Q psy17649 424 FTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457 (457)
Q Consensus 424 f~~fGk~~iK~~k~SPDafiQ~AlQLA~yr~~G~ 457 (457)
|.+|||++||++|+||||||||||||||||+||+
T Consensus 389 f~~~Gk~~iK~~~~spDa~iQ~alQLA~~r~~g~ 422 (591)
T PF00755_consen 389 FTDYGKDFIKKFKVSPDAFIQMALQLAYYRLHGK 422 (591)
T ss_dssp ETS-SHHHHHHTTS-HHHHHHHHHHHHHHHHHSS
T ss_pred ecccchHhHhcCCCCccHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999996
No 3
>KOG3716|consensus
Probab=100.00 E-value=3.8e-106 Score=828.22 Aligned_cols=424 Identities=30% Similarity=0.443 Sum_probs=379.8
Q ss_pred HHHHHhhccccccCccccccCCCcCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcccHHHH
Q psy17649 12 IREFQKRGYKGLLGKYLVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQEL 91 (457)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~q~~LPrLPvP~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~~g~G~~L 91 (457)
+..|+.|+.= ++++|+..++.|++|.+||+||||.|++|++|||+||||++++|||.++.+.++||+.++|++|
T Consensus 137 S~~T~iW~~v------~~ilS~~~P~L~S~q~~LP~LPlP~v~DTV~rYL~SmkpilseEe~~~l~~la~eF~~~~g~~L 210 (764)
T KOG3716|consen 137 SYATKIWGVV------VKILSKRPPMLYSFQRSLPRLPLPAVKDTVTRYLDSMKPILSEEEFDRLEELAEEFLSTEGRRL 210 (764)
T ss_pred cHHHHHHHHH------HHHHcCCCcchhhhhccCcCCCCCcHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhHHH
Confidence 4456666654 3455666788999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhcccchhhhhhhhccccCCCCCCccccCCCCCCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCc
Q psy17649 92 HKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKP 171 (457)
Q Consensus 92 q~~L~~~a~~~~nwl~~~W~~~~YL~~R~pl~~~sN~~~~~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~l~p 171 (457)
|+.|..+++..+||++|||++++||++|.||++|||+++...++.. .+..|+.|||++|+..+.|+++|++++++|
T Consensus 211 Q~yl~lksw~s~NYVsdwWEeyvYlrgR~PLminSn~y~~d~ly~~----~t~~QAaRaan~i~~~~~~r~~ldRqEi~p 286 (764)
T KOG3716|consen 211 QRYLWLKSWWSDNYVSDWWEEYVYLRGRYPLMINSNYYAMDVLYGK----PTLNQAARAANVIYIELLFRRALDRQEIKP 286 (764)
T ss_pred HHHHHHHHHHHhchhHHHHHHHHHhccCCceeeeccceeeeeeccC----CcHHHHHHHHHHHHHHHHHHHHhhhhhcCC
Confidence 9999999999999999999999999999999999998876555443 357999999999999999999999999999
Q ss_pred cccC-CCcccchhhhhhhcCcccccCCCCCeeEecccccCCCCCCCEEEEEECCeEEEEEEEcCCCccCCHHHHHHHHHH
Q psy17649 172 QLGT-GDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNS 250 (457)
Q Consensus 172 ~~~~-~~~plcM~qy~~lF~t~RiP~~~~D~l~~~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~g~~~ls~~el~~~l~~ 250 (457)
-+. |..|+|..||+++||||||||++.|.+.++ +.++||+|.|||++|||+++++| +++++.||++|+++
T Consensus 287 -~~~~G~~plct~qYe~~fnt~RiPG~e~D~~~h~-------~dskHi~V~hkG~~yKv~i~~~~-rll~p~eLekq~~e 357 (764)
T KOG3716|consen 287 -YMALGDGPLCTRQYERIFNTTRIPGEETDRLQHL-------PDSKHIAVYHKGRWYKVDIYDGG-RLLKPCELEKQFQE 357 (764)
T ss_pred -eeecCCccchHHHHHHHhhcccCCCcccchheec-------CCcceEEEEEccEEEEEEEecCC-eeccHHHHHHHHHH
Confidence 665 569999999999999999999999999995 45899999999999999999778 99999999999999
Q ss_pred HHhccC--CCCCCCccccCCCChHHHHHHHHHHHhcChhhHHHHHHHHhccEEEEecCCCCCCC---hHHHhh----hhc
Q psy17649 251 ILQASS--KSKGSGIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTND---SEICQQ----LIS 321 (457)
Q Consensus 251 I~~~~~--~~~~~~vg~LTa~~Rd~Wa~~r~~L~~~~~~N~~~L~~IesalFvv~LDd~~p~~~---~e~~~~----~l~ 321 (457)
|++.+. .+....+++||+++|+.||++|++... +..|+++|+.||+|+|||+||++.-.-+ ++..+. +||
T Consensus 358 il~~~~~~~~ge~~lAaLTa~~R~~Wa~~R~~~F~-~g~Nk~sL~~IE~AafvvsLDee~~~~~~~d~~~l~~y~k~lLh 436 (764)
T KOG3716|consen 358 ILDRDSKPQGGEEKLAALTAGPRDEWARNRQKFFL-SGVNKESLEAIETAAFVVSLDEEERWGDEEDPESLSNYAKNLLH 436 (764)
T ss_pred HhcCCCCCcchhhHHHhhccCCccHHHHHHHHHHh-hcccHHHHHHHhhceEEEEecCccccCCcCCHHHHHHHHHHHhc
Confidence 999322 233457999999999999999999988 6899999999999999999997643222 232222 999
Q ss_pred CCCCCccccccceEEEecCCceeeecccCCCcchhHHHHHHHHHHHH-----hhccCCccCCCCCCCCCCCCeeeeccCC
Q psy17649 322 NDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSL-----AENLATISEDKTVRGGLEAPVPLEFDTD 396 (457)
Q Consensus 322 G~~~NRW~DKslq~IV~~nG~~g~~~EHS~~DG~~~~~~~~~v~~~~-----~~~~~~~~~~~~~~~~~~~p~~L~w~l~ 396 (457)
|+|.|||||||+++||++||++|.|.||||+||+.+.+++|++...- ....+.+.+.+.. .+|.|++|+|+++
T Consensus 437 G~g~nRWfDKsf~~iv~kNGr~G~n~EHSwaDaai~~H~~E~~l~~D~~~lgy~~~g~c~g~~~~--~~p~p~rL~wd~p 514 (764)
T KOG3716|consen 437 GDGYNRWFDKSFNYIVSKNGRVGLNAEHSWADAAIMDHLWENVLYVDKFVLGYPEDGHCKGIPKP--TLPKPTRLKWDIP 514 (764)
T ss_pred CCCccceeccceeEEEecCCccccccccCchhhHHHHHHHHHHHhhceeeecCCCCccccCCCCC--CCCCcceeeecCC
Confidence 99999999999999999999999999999999999999999987542 3445666654332 6788999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhccceeeeeecccchhhhhccCCChhHHHHHHHHHHHHHHhcC
Q psy17649 397 DQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457 (457)
Q Consensus 397 ~~~~~~I~~a~~~~~~~~~~~~~~~~~f~~fGk~~iK~~k~SPDafiQ~AlQLA~yr~~G~ 457 (457)
.++++.|++|-..+.++++|++++.+.|.+|||++|||||+||||||||||||||||..||
T Consensus 515 ~~~~~~I~~~~~~~~~l~~Dv~~~~~~f~dfGKg~iKKc~vSPDafiQmAlQLA~yrDqGk 575 (764)
T KOG3716|consen 515 KECLDEIERAYEAAKKLADDVDLHSLVFTDFGKGFIKKCGVSPDAFIQMALQLAYYRDQGK 575 (764)
T ss_pred hhHHHHHHHHHHHHHHHhhhchheeeeehhhcchhHHhcCCCchHHHHHHHHHHHHhhcCe
Confidence 9999999999999999999999999999999999999999999999999999999999996
No 4
>KOG3718|consensus
Probab=100.00 E-value=8.4e-97 Score=733.06 Aligned_cols=428 Identities=36% Similarity=0.614 Sum_probs=397.9
Q ss_pred ccccCCCcCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHhhhcccchh
Q psy17649 28 LVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLS 107 (457)
Q Consensus 28 ~~~~~~~~~~t~~~q~~LPrLPvP~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~~g~G~~Lq~~L~~~a~~~~nwl~ 107 (457)
+++.++...+||++|++||.||||+|++|++|||+|++|++++||++++++.|++|++|.|.+||+.|++|++..+|||+
T Consensus 3 ~~~~~~m~~~TFs~qdsLPSLPlPeLeETleKYl~s~~pf~tkeE~a~~ek~a~eFqsg~GaqLh~~LkeRakg~rNWLe 82 (609)
T KOG3718|consen 3 LYFMSKMDKNTFSFQDSLPSLPLPELEETLEKYLSSIQPFGTKEELAQAEKTADEFQSGVGAQLHEQLKERAKGMRNWLE 82 (609)
T ss_pred chhhhhcccccccccccCCCCCCchHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhhhhhHH
Confidence 56677777899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhccccCCCCCCccccCCCCCCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCcccchhhhhh
Q psy17649 108 GWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKK 187 (457)
Q Consensus 108 ~~W~~~~YL~~R~pl~~~sN~~~~~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~l~p~~~~~~~plcM~qy~~ 187 (457)
|||++++||..|.||.+|+|+.+|...+.+.+|+.+..|++|||..||+.+.||++++.+++|+ ...+|.+++|+||+.
T Consensus 83 dWWyd~aYl~iR~pl~p~v~~gap~~~f~~~~p~~dg~qle~aa~~ihH~LsyWdl~Rkekipv-tssrg~~wdmnqf~h 161 (609)
T KOG3718|consen 83 DWWYDYAYLLIRMPLLPYVLMGAPSQLFMVGVPETDGYQLESAARHIHHSLSYWDLTRKEKIPV-TSSRGIKWDMNQFKH 161 (609)
T ss_pred HHHHhhhHHhhccccchhhhhcCchhhhhcCCCCCChhHHHHHHHHHHHHhHHHHHHhhcccce-eccCCccccHHHHHH
Confidence 9999999999999999999999998888888999999999999999999999999999999999 999999999999999
Q ss_pred hcCcccccCCCCCeeEecccccCCCCCCCEEEEEECCeEEEEEEEcCCCccCC-HHHHHHHHHHHHhccCCCCCCCcccc
Q psy17649 188 FFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLT-VGEWKHQFNSILQASSKSKGSGIAAL 266 (457)
Q Consensus 188 lF~t~RiP~~~~D~l~~~~~~~~~~~~~~HIvVl~~g~~y~v~v~~~g~~~ls-~~el~~~l~~I~~~~~~~~~~~vg~L 266 (457)
||+|||+||.++|+|.+||+++.||.++.||||+|+||+|++++.++++..++ |++|.+.++.+.+.+++|.+..|..|
T Consensus 162 lFstcrvPg~trD~i~ryFrTk~EGktPsHviIlc~Gr~fkfd~~hEdd~~l~~peel~nllk~~k~~ssep~gc~v~~L 241 (609)
T KOG3718|consen 162 LFSTCRVPGETRDHIERYFRTKDEGKTPSHVIILCKGRQFKFDCVHEDDTILSAPEELVNLLKVRKILSSEPLGCCVPTL 241 (609)
T ss_pred HHhhccCCCcchHHHHHHhcchhcCCCCCeEEEEcCCcEEEEEeeccCCcccCCHHHHHHHHHHHHhccCCCCCcchhcc
Confidence 99999999999999999999999999999999999999999999955547888 66665555555447677888899999
Q ss_pred CCCChHHHHHHHHHHHhcChhhHHHHHHHHhccEEEEecCCCCCCChHHHhhhhcCCCCCccccccceEEEecCCceeee
Q psy17649 267 SCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGI 346 (457)
Q Consensus 267 Ta~~Rd~Wa~~r~~L~~~~~~N~~~L~~IesalFvv~LDd~~p~~~~e~~~~~l~G~~~NRW~DKslq~IV~~nG~~g~~ 346 (457)
|+++||.||++|+.|+++++.|.+.|..||+|+|++|+-|..|.+..|.....|.|+..-||-||+.++|++.||+++.+
T Consensus 242 Ts~eRd~WA~nRe~Li~~s~aN~ell~~VeSa~l~lsm~d~~pedyse~~~~~l~gd~~~rw~dks~niiif~ng~~~~~ 321 (609)
T KOG3718|consen 242 TSDERDTWARNRERLIEISVANKELLLLVESACLELSMYDQSPEDYSESCQLGLYGDLHSRWADKSSNIIIFRNGRCNWT 321 (609)
T ss_pred ccccccHHHHHHHHHHhcChhhHHHHHHHhhheEEEEeccCCcccHHHHHHHHHhcchHhhhhhccccEEEeecCceeec
Confidence 99999999999999999999999999999999999999998887666766668999999999999999999999999999
Q ss_pred cccCCCcchhHHHHHHHHHHHHhhccCCccCCCCCCCCCCCCeeeeccCCHHHHHHHHHHHHHHHHHhhccceeeeeecc
Q psy17649 347 CEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTG 426 (457)
Q Consensus 347 ~EHS~~DG~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~p~~L~w~l~~~~~~~I~~a~~~~~~~~~~~~~~~~~f~~ 426 (457)
||||..||+++++...|+...+.+....+..+.... +.+.|++|.|.+++.+...|.+|+.++....+++.+..++|++
T Consensus 322 ~Dhsn~daiv~l~~g~yv~~~~~~q~~~~~ks~s~~-~~~~peeLiF~lde~l~n~Is~a~~dfy~~~sd~~v~~yaft~ 400 (609)
T KOG3718|consen 322 GDHSNYDAIVSLSYGTYVQLSFLEQPEPDWKSASKG-NVLEPEELIFQLDETLKNEISRAQKDFYDRGSDVTVTFYAFTD 400 (609)
T ss_pred ccCCCcceEEEEehhHHHHHHHHhccCCCccccccc-CcCCceeEEEEeChHHHHHHHHHHHHHHhhccceeEEEEEecc
Confidence 999999999999999999988765444433333333 6788999999999999999999999999999999999999999
Q ss_pred cchhhhhccCCChhHHHHHHHHHHHHHHhcC
Q psy17649 427 FGKAEITELKLHPDSFVQMALQLAYYTIHNK 457 (457)
Q Consensus 427 fGk~~iK~~k~SPDafiQ~AlQLA~yr~~G~ 457 (457)
|||+++|..++.||.|||+||||||||+||+
T Consensus 401 yGk~lcKt~~lhpDTfvQlaLQlAyyktHg~ 431 (609)
T KOG3718|consen 401 YGKDLCKTHRLHPDTFVQLALQLAYYKTHGE 431 (609)
T ss_pred chHHHHhccccCccHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999995
No 5
>KOG3719|consensus
Probab=100.00 E-value=1.3e-94 Score=724.26 Aligned_cols=416 Identities=27% Similarity=0.446 Sum_probs=365.9
Q ss_pred ccccCCCcCccccccCCCCCCCCCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhcccHHHHHHHHHHHhhhc--ccc
Q psy17649 28 LVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEE--KNW 105 (457)
Q Consensus 28 ~~~~~~~~~~t~~~q~~LPrLPvP~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~~g~G~~Lq~~L~~~a~~~--~nw 105 (457)
.+.++.++.+||+||++|||||+|+|++||+|||+++|||++++|+++|++.|++|++++|.+||++|++..+.. ++|
T Consensus 6 ~qyl~~s~~pt~~~q~sLpRLPIPkL~DTl~Ryl~s~kpLl~p~q~~kt~~ti~sfE~~~g~~LhekL~syd~~n~~tsy 85 (638)
T KOG3719|consen 6 YQYLQDSSGPTFHFQESLPRLPIPKLEDTLNRYLESLKPLLDPEQFRKTEQTIRSFENNIGSKLHEKLLSYDADNKHTSY 85 (638)
T ss_pred ceEeeccCCCceecccccccCCCCchhhHHHHHHHhccccCCHHHHHHHHHHHHHHHcCccHHHHHHHHHhhccCccchh
Confidence 456677889999999999999999999999999999999999999999999999999999999999999987654 589
Q ss_pred hhhhhhhhccccCCCCCCccccCCCCCCCccCCCCCCCChHHHHHHHHHHHHHHHHHHHhcCCCCccc------------
Q psy17649 106 LSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQL------------ 173 (457)
Q Consensus 106 l~~~W~~~~YL~~R~pl~~~sN~~~~~~~~~~~~~~~~~~q~~rAA~li~~~l~f~~~l~~~~l~p~~------------ 173 (457)
+++.|.++ ||+.|.|+++|.| |++++..+..+...+|+.||+.+++++++|++.|+.+-|+||.
T Consensus 86 is~pwfdm-yl~~r~~vvLn~N---Pfl~l~~Dp~pk~~~Q~~ratnl~~sa~Rf~rsL~a~lL~Pev~h~N~kksdt~~ 161 (638)
T KOG3719|consen 86 ISQPWFDM-YLRARAPVVLNYN---PFLVLADDPLPKYNDQLTRATNLVISAARFIRSLKADLLEPEVFHMNPKKSDTSP 161 (638)
T ss_pred hccchHHH-HHhhcCCceeccC---cceeeCCCCCccccHHHhhhhhhhHHHHHHHHHHHhhhcCcchhccCCcccccHH
Confidence 99999996 9999999999999 6666666555556899999999999999999999999999931
Q ss_pred ------------------cCCCcccchhhhhhhcCcccccCCCCCeeEecccccCCCCCCCEEEEEECCeEEEEEEE-cC
Q psy17649 174 ------------------GTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNAL-HK 234 (457)
Q Consensus 174 ------------------~~~~~plcM~qy~~lF~t~RiP~~~~D~l~~~~~~~~~~~~~~HIvVl~~g~~y~v~v~-~~ 234 (457)
..+..||+|+||.++||++|||..+.|++.. +++++||+||+|||+|.|+|+ .+
T Consensus 162 fk~l~~~~p~tls~~~~~~~~a~pldmsQy~rlf~~sRipk~~~D~L~~-------d~~skHil~m~rG~~Y~~~VLDs~ 234 (638)
T KOG3719|consen 162 FKRLFKNKPYTLSWYGDYAFKAFPLDMSQYTRLFGSSRIPKHEKDELKT-------DPDSKHILAMYRGQFYAFDVLDSD 234 (638)
T ss_pred HHHHHhcCCcchhhccchhccCCCcchhhhhhhcCcccCCCCCccceec-------CCCCceEEEEecCceEEEEEecCC
Confidence 1366899999999999999999999999987 367899999999999999999 78
Q ss_pred CCccCCHHHHHHHHHHHHh-ccCCCCCCCccccCCCChHHHHHHHHHHHhcChhhHHHHHHHHhccEEEEecCCCCC-CC
Q psy17649 235 DSTPLTVGEWKHQFNSILQ-ASSKSKGSGIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPT-ND 312 (457)
Q Consensus 235 g~~~ls~~el~~~l~~I~~-~~~~~~~~~vg~LTa~~Rd~Wa~~r~~L~~~~~~N~~~L~~IesalFvv~LDd~~p~-~~ 312 (457)
| .++|++||...|..|+. .+..+...|+|.||+.+||.||++|++|.. ..|-+.|..|++|+|||||||..-. +.
T Consensus 235 g-~i~tp~el~~~l~~Il~d~s~~a~s~plG~lTS~srd~Wa~~R~~L~~--~~~~e~lr~IDsALF~lcLDDg~f~~d~ 311 (638)
T KOG3719|consen 235 G-KIYTPEELTAILNHILKDSSGIAPSTPLGSLTSESRDNWAEARQRLQS--AGNNELLRKIDSALFVLCLDDGDFTADQ 311 (638)
T ss_pred C-cCcCHHHHHHHHHHHHhcccCCCCCCccceecccchhHHHHHHHHHHh--cCChhhHHhccceeEEEEecCCCcchHH
Confidence 8 89999999999999998 332334568999999999999999999985 6788999999999999999985422 22
Q ss_pred hHHHhh-hhcC-CCCCccccccceEEEecCCceeeecccCCCcchhHHHHHHHHHHHHhhccCCccCC--CCCCCCCC-C
Q psy17649 313 SEICQQ-LISN-DYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISED--KTVRGGLE-A 387 (457)
Q Consensus 313 ~e~~~~-~l~G-~~~NRW~DKslq~IV~~nG~~g~~~EHS~~DG~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~~~-~ 387 (457)
.+...+ +|+| ++.|||||||+|+||++||.+++|+||||+||.+|+|+.+.+++.-.+.......+ .+...++. .
T Consensus 312 ~~~l~rsml~gd~~~nRWfDK~lqLiitadgka~InfEhswgDGvaVLR~~~EiykDt~~~p~vs~~~~~~P~t~~~~~a 391 (638)
T KOG3719|consen 312 QQMLNRSMLEGDDCVNRWFDKSLQLIITADGKATINFEHSWGDGVAVLRFFNEIYKDTAKDPFVSPDDNVTPATKDLATA 391 (638)
T ss_pred HHHHHHHHhcCcchhhhhHhhhhhEEEecCCceEEEeeeccccchhhHHHHHHHHhcccCCCccccCCCCCccccchhhc
Confidence 233333 8999 89999999999999999999999999999999999999999987643222211111 11111333 3
Q ss_pred CeeeeccCCHHHHHHHHHHHHHHHHHhhccceeeeeecccchhhhhccCCChhHHHHHHHHHHHHHHhcC
Q psy17649 388 PVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457 (457)
Q Consensus 388 p~~L~w~l~~~~~~~I~~a~~~~~~~~~~~~~~~~~f~~fGk~~iK~~k~SPDafiQ~AlQLA~yr~~G~ 457 (457)
+++|+|.+++.+...|..|+.++..+++++|+..+.|..+|+..||+.|+|||++||+|+|+|||++||+
T Consensus 392 v~kl~f~~~d~Lks~v~~Ae~K~a~lis~ld~~~~~f~~~~r~~~K~~klsPDs~vQlafQ~A~~alYg~ 461 (638)
T KOG3719|consen 392 VRKLEFELDDALKSHVHLAETKLADLISKLDIVRLSFPLGGRSAIKKLKLSPDSVVQLAFQMAYYALYGR 461 (638)
T ss_pred ccccceeehhhHHhhhhHHHHHHHHHhhhcceEEEeccCCChHHHHhhCCCcHHHHHHHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999995
No 6
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=58.96 E-value=18 Score=24.63 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.2
Q ss_pred CCEEEEEECCeEEEEEEEcCC
Q psy17649 215 PSHVIVQCNGHIYKMNALHKD 235 (457)
Q Consensus 215 ~~HIvVl~~g~~y~v~v~~~g 235 (457)
.+.|.+.|+|+.|.+.+..+|
T Consensus 12 ~~ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 12 GREVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp TSEEEEEETTEEEEEEEETTT
T ss_pred CCEEEEEeCCeEEEeeEccCC
Confidence 588999999999999998777
No 7
>PF11486 DUF3212: Protein of unknown function (DUF3212); InterPro: IPR021579 Members in this family of proteins are annotated as YfmB however currently no function for this protein is known. ; PDB: 2EUC_B.
Probab=55.81 E-value=17 Score=30.66 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q psy17649 52 PLDVTLEKYIQSVKPFATQEELTNVQNLAKEFK 84 (457)
Q Consensus 52 ~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~ 84 (457)
.++++|..||.+|+|+++.+-++..+.-+.+|.
T Consensus 68 ~ie~~LSsyl~al~p~it~dm~~~S~~na~~yl 100 (120)
T PF11486_consen 68 EIENKLSSYLTALLPFITADMLKVSKFNANEYL 100 (120)
T ss_dssp HHHHHHHHHHHHHGGG--HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999998888888875
No 8
>PRK10183 hypothetical protein; Provisional
Probab=44.42 E-value=36 Score=25.27 Aligned_cols=21 Identities=19% Similarity=0.409 Sum_probs=19.2
Q ss_pred CCEEEEEECCeEEEEEEEcCC
Q psy17649 215 PSHVIVQCNGHIYKMNALHKD 235 (457)
Q Consensus 215 ~~HIvVl~~g~~y~v~v~~~g 235 (457)
.+.|.+.|+|+.|.+.+-++|
T Consensus 30 ~~~v~I~H~G~~Y~LR~Tr~G 50 (56)
T PRK10183 30 DGKVIIDHDGQEYLLRKTQAG 50 (56)
T ss_pred CCEEEEEECCcEEEeEEccCC
Confidence 578999999999999998777
No 9
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=41.00 E-value=54 Score=34.71 Aligned_cols=37 Identities=22% Similarity=0.185 Sum_probs=32.2
Q ss_pred eEEEecCC------ceeeecccCCCcchhHHHHHHHHHHHHhh
Q psy17649 334 AVVFFKNG------ASGGICEHTPFDGMVNVTACFYVLLSLAE 370 (457)
Q Consensus 334 q~IV~~nG------~~g~~~EHS~~DG~~~~~~~~~v~~~~~~ 370 (457)
.++|..++ ...+.+.|+.+||+..+.+.+.+++.+.+
T Consensus 128 rl~vl~~~~~~~~~~i~f~~~H~i~DG~Sg~~Fh~~ll~~L~~ 170 (480)
T PF07247_consen 128 RLIVLPNEDDESFQFIVFVFHHAIFDGMSGKIFHEDLLEALNS 170 (480)
T ss_pred EEEEECCCCCCcceEEEEEecccccccHHHHHHHHHHHHHHhh
Confidence 48888887 66899999999999999999999988754
No 10
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=35.51 E-value=22 Score=31.69 Aligned_cols=25 Identities=32% Similarity=0.283 Sum_probs=19.5
Q ss_pred Cccccccce-EEEecCCceeeecccC
Q psy17649 326 NRYADKSVA-VVFFKNGASGGICEHT 350 (457)
Q Consensus 326 NRW~DKslq-~IV~~nG~~g~~~EHS 350 (457)
--|-|||++ |++..||..|+++-=|
T Consensus 15 ~~w~DrSvNvf~~~~~gt~~~sfvIs 40 (147)
T COG5435 15 AAWQDRSVNVFVSGDNGTSGFSFVIS 40 (147)
T ss_pred chhccceEEEEEecCCCcceeEEEEe
Confidence 449999999 6668899888877543
No 11
>PRK10945 gene expression modulator; Provisional
Probab=28.50 E-value=1e+02 Score=24.05 Aligned_cols=31 Identities=26% Similarity=0.159 Sum_probs=26.6
Q ss_pred CHHHHHHHHHHhccCCCCHHHHHHHHHHHHH
Q psy17649 52 PLDVTLEKYIQSVKPFATQEELTNVQNLAKE 82 (457)
Q Consensus 52 ~L~~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~ 82 (457)
+-.+||+|+.+..+.-++++|++....+++-
T Consensus 19 ss~eTLEkvie~~~~~L~~~E~~~f~~AaDH 49 (72)
T PRK10945 19 QTIDTLERVIEKNKYELSDDELAVFYSAADH 49 (72)
T ss_pred CcHHHHHHHHHHhhccCCHHHHHHHHHHHHH
Confidence 3468999999999999999999988877764
No 12
>PF00140 Sigma70_r1_2: Sigma-70 factor, region 1.2; InterPro: IPR009042 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SMY_F 1IW7_P 1SIG_A 3IYD_F 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P 3DXJ_P ....
Probab=25.48 E-value=71 Score=21.36 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcc--CCCCHHH-HHHH
Q psy17649 54 DVTLEKYIQSVK--PFATQEE-LTNV 76 (457)
Q Consensus 54 ~~Tl~rYL~sv~--Pl~s~ee-~~~t 76 (457)
+++++.||..+. ||+|.+| ++-.
T Consensus 1 ~D~l~~Yl~ei~~~~LLt~eeE~~LA 26 (37)
T PF00140_consen 1 SDSLRLYLKEIGRYPLLTAEEEIELA 26 (37)
T ss_dssp HHHHHHHHHHHHHS-EETTHHHHHHH
T ss_pred CcHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 478999999764 7888554 4433
No 13
>PF02458 Transferase: Transferase family; InterPro: IPR003480 This family includes a number of transferase enzymes. These include anthranilate N-hydroxycinnamoyl/benzoyltransferase that catalyzes the first committed reaction of phytoalexin biosynthesis []. Deacetylvindoline 4-O-acetyltransferase (2.3.1.107 from EC) catalyzes the last step in vindoline biosynthesis is also a member of this family []. The motif HXXXD is probably part of the active site. The family also includes trichothecene 3-O-acetyltransferase.; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups; PDB: 2BGH_B 2E1U_B 2E1T_A 2E1V_A 2XR7_A 3B30_A 2RKT_A 3B2S_A 2RKV_A 2ZBA_C ....
Probab=24.33 E-value=86 Score=32.48 Aligned_cols=37 Identities=24% Similarity=0.038 Sum_probs=27.6
Q ss_pred cceEEEecCC-c-eeeecccCCCcchhHHHHHHHHHHHH
Q psy17649 332 SVAVVFFKNG-A-SGGICEHTPFDGMVNVTACFYVLLSL 368 (457)
Q Consensus 332 slq~IV~~nG-~-~g~~~EHS~~DG~~~~~~~~~v~~~~ 368 (457)
.+|+..+++| . .|+.+-|..+||+.+..++....+.+
T Consensus 136 ~vQvt~f~~GG~~lg~~~~H~v~Dg~~~~~fl~~wa~~~ 174 (432)
T PF02458_consen 136 AVQVTRFKCGGLALGVSFHHAVADGTGFSQFLKAWAEIC 174 (432)
T ss_dssp EEEEEEETTTEEEEEEEEETTT--HHHHHHHHHHHHHHH
T ss_pred EeeeeeecccceeeeeeceeccCcccchhHHHHHHHhhh
Confidence 4778889998 3 39999999999999999887555443
No 14
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=20.02 E-value=1.4e+02 Score=22.50 Aligned_cols=30 Identities=33% Similarity=0.535 Sum_probs=23.9
Q ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHhh
Q psy17649 55 VTLEKYIQSVKPFATQEELTNVQNLAKEFK 84 (457)
Q Consensus 55 ~Tl~rYL~sv~Pl~s~ee~~~t~~~v~~F~ 84 (457)
+-+..-|+.++|=+|++++++-++..++|.
T Consensus 33 ~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 33 EDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 335566777899999999999999999983
Done!