RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17649
(457 letters)
>1xl7_A COT, peroxisomal carnitine O-octanoyltransferase; selenomethionine,
hepes; HET: EPE; 2.00A {Mus musculus} SCOP: c.43.1.3
c.43.1.3 PDB: 1xl8_A* 1xmd_A* 1xmc_A*
Length = 612
Score = 330 bits (846), Expect = e-107
Identities = 157/433 (36%), Positives = 242/433 (55%), Gaps = 8/433 (1%)
Query: 30 LSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQ 89
L+ + +TF+ + LPSLPVP L+ +L+KY++SVKPFA ++E + + ++F+ G G+
Sbjct: 5 LTKSVEERTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGK 64
Query: 90 ELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
LH+ LL++A ++NWL WW AYL R N GP P E G +E
Sbjct: 65 RLHQKLLERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLER 124
Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTE 209
S+ + +W LLR+EKL P +G+ P M+ F+ F+T ++PG DSI+NYFKTE
Sbjct: 125 GSMMLWHNLNYWQLLRREKL-PVHKSGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTE 183
Query: 210 AEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ-ASSKSKGSGIAALSC 268
+EG CP+H+ V C G + + LH+ +T E Q I + S++ G IAAL+
Sbjct: 184 SEGHCPTHIAVLCRGRAFVFDVLHEGC-LITPPELLRQLTYIHKKCSNEPVGPSIAALTS 242
Query: 269 EPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISN----DY 324
E R++WA+ R Y++ +N L+E I +++F S++++SP E Q+ D
Sbjct: 243 EERTRWAKAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDP 302
Query: 325 ANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGG 384
+ R+ DKS ++ F NG G C+H P+D MV V YV + E + VR
Sbjct: 303 SVRWGDKSYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVR-D 361
Query: 385 LEAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQ 444
+ P L F D++I ++S+AKA+ + ++ FT FGK E LHPD+F+Q
Sbjct: 362 IPLPEELVFTVDEKILNDVSQAKAQHLKAASDLQIAASTFTSFGKKLTKEEALHPDTFIQ 421
Query: 445 MALQLAYYTIHNK 457
+ALQLAYY +H +
Sbjct: 422 LALQLAYYRLHGR 434
>1nm8_A Carnitine O-acetyltransferase; two equally sized domains,
anti-parallel beta-strand; 1.60A {Homo sapiens} SCOP:
c.43.1.3 c.43.1.3 PDB: 1s5o_A* 2h3u_A* 2h3p_A* 1t7q_A*
1t7n_A 1t7o_A* 1ndb_A 1ndf_A* 1ndi_A* 2h3w_A*
Length = 616
Score = 321 bits (824), Expect = e-104
Identities = 118/432 (27%), Positives = 210/432 (48%), Gaps = 24/432 (5%)
Query: 38 TFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEF--KNGIGQELHKSL 95
+ + LP LPVPPL +L+ Y+++++P ++EE + + L EF G+G+ L K L
Sbjct: 7 HHHHTDPLPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGL 66
Query: 96 LKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCH 155
++A + +NWLS WW K AYL R ++ + + P ++ G + A+
Sbjct: 67 ERRARKTENWLSEWWLKTAYLQYRQPVVIYSSPGVMLPKQDFVDLQGQ---LRFAAKLIE 123
Query: 156 ELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCP 215
++ F ++ E L + G KP CM+ + + ++ R+PG + D++ N+ KT+ P
Sbjct: 124 GVLDFKVMIDNETLPVEY-LGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTKKP---P 179
Query: 216 SHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKSKGSGIAALSCEPRSKWA 275
+H+ V N ++++ H D TPLT + Q I +S ++ + L+ R+ WA
Sbjct: 180 THITVVHNYQFFELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWA 239
Query: 276 ENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDY----------A 325
+ + L K N+ + I ++F+V LD T P ++ + ++
Sbjct: 240 KAYNT-LIKDKVNRDSVRSIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSG 298
Query: 326 NRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGL 385
NR+ DK++ + ++G+ G + EH +G VT YV+ + ++ L
Sbjct: 299 NRWFDKTLQFIVAEDGSCGLVYEHAAAEGPPIVTLLDYVIEYTKKP----ELVRSPMVPL 354
Query: 386 EAPVPLEFDTDDQITKELSRAKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQM 445
P L F+ +I ++ +AK I ++ F FGK KL PD+F+QM
Sbjct: 355 PMPKKLRFNITPEIKSDIEKAKQNLSIMIQDLDITVMVFHHFGKDFPKSEKLSPDAFIQM 414
Query: 446 ALQLAYYTIHNK 457
ALQLAYY I+ +
Sbjct: 415 ALQLAYYRIYGQ 426
>2deb_A CPT II, carnitine O-palmitoyltransferase II, mitochondrial; central
six-stranded beta-sheet; HET: BOG COA PLM; 1.60A {Rattus
norvegicus} PDB: 2fw3_A* 2fyo_A 2rcu_A* 2h4t_A*
Length = 653
Score = 309 bits (791), Expect = 7e-99
Identities = 102/459 (22%), Positives = 186/459 (40%), Gaps = 46/459 (10%)
Query: 32 DDDKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQEL 91
T + LP LP+P L+ T+++Y+ + KP + + L K F+ G+G+EL
Sbjct: 31 QHSIVPTMHYQDSLPRLPIPKLEDTMKRYLNAQKPLLDDSQFRRTEALCKNFETGVGKEL 90
Query: 92 HKSLLK--KASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEH 149
H LL K ++ +++SG W YL +RDS++ +N F + +
Sbjct: 91 HAHLLAQDKQNKHTSYISGPWFDM-YLTARDSIVLNFNPFMAFNPDPKSEYNDQ---LTR 146
Query: 150 ASLFCHELIKFWFLLRKEKLKPQLGT------------------------------GDKP 179
A+ ++F L+ L+P++ P
Sbjct: 147 ATNLTVSAVRFLKTLQAGLLEPEVFHLNPSKSDTDAFKRLIRFVPPSLSWYGAYLVNAYP 206
Query: 180 FCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPL 239
M + + FN+ RIP D + K H++V GH Y + L +D +
Sbjct: 207 LDMSQYFRLFNSTRIPRPNRDELFTDTKAR-------HLLVLRKGHFYVFDVLDQDGNIV 259
Query: 240 TVGEWKHQFNSILQASSKSKGSGIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAM 299
E + IL SS +A L+ E R WAE R ++ N++ ++ +DSA+
Sbjct: 260 NPLEIQAHLKYILSDSSPVPEFPVAYLTSENRDVWAELRQKLIFDG--NEETLKKVDSAV 317
Query: 300 FSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVT 359
F + LD+ + + ++ D NR+ DKS ++ ++G + EH+ DG+ +
Sbjct: 318 FCLCLDDFPMKDLIHLSHTMLHGDGTNRWFDKSFNLIVAEDGTAAVHFEHSWGDGVAVLR 377
Query: 360 ACFYVLLSLAENLA-TISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAEQKISRYEIS 418
V + A T + L F+ + ++ AK + + +S
Sbjct: 378 FFNEVFRDSTQTPAITPQSQPAATNSSASVETLSFNLSGALKAGITAAKEKFDTTVKTLS 437
Query: 419 AIRKAFTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457
F GK + + +L PD+ Q+A Q+A+ + +
Sbjct: 438 IDSIQFQRGGKEFLKKKQLSPDAVAQLAFQMAFLRQYGQ 476
>1t1u_A Choline O-acetyltransferase; choline acetyltransferase; 1.55A
{Rattus norvegicus} SCOP: c.43.1.3 c.43.1.3 PDB: 1q6x_A
2fy2_A 2fy3_A 2fy4_A* 2fy5_A*
Length = 639
Score = 301 bits (772), Expect = 4e-96
Identities = 111/439 (25%), Positives = 199/439 (45%), Gaps = 26/439 (5%)
Query: 35 KAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEF--KNGIGQELH 92
+ + LP LPVPPL TL Y+Q ++ +E+ Q + K F G+G+ L
Sbjct: 12 VKASSWEELDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQ 71
Query: 93 KSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASL 152
+ LL++ + NW+S +W YL +R +L + + + A+
Sbjct: 72 EKLLERQEKTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHFQDTNDQ---LRFAAC 128
Query: 153 FCHELIKFWFLLRKEKLKPQLGT---GDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTE 209
++ + LL L +P CM + + F++ R+PG D++V
Sbjct: 129 LISGVLSYKTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVAQ--KS 186
Query: 210 AEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSK--SKGSGIAALS 267
+ P HVIV C + ++ + + L+ G+ Q I++ +S + I L+
Sbjct: 187 SIMPEPEHVIVACCNQFFVLDVVI-NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLT 245
Query: 268 CEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQL-------I 320
+ RS+WA+ R+ L K + N+ ++ I+ + V LD S+ + L
Sbjct: 246 SDGRSEWAKARTV-LLKDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGC 304
Query: 321 SNDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKT 380
S + ANR+ DKS+ V ++G G +CEH+PFDG+V V ++L + + + +
Sbjct: 305 SLNGANRWYDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMMTSNKKLVRADS 364
Query: 381 VRGGLEAPVPLEFDTDDQITKELSRAK--AEQKISRYEISAIRKAFTGFGKAEITELKLH 438
V L AP L + + L+ + ++ + + + F +GK I + K
Sbjct: 365 VSE-LPAPRRLRWKCSPETQGHLASSAEKLQRIVKNLDFIVYK--FDNYGKTFIKKQKYS 421
Query: 439 PDSFVQMALQLAYYTIHNK 457
PD F+Q+ALQLAYY ++ +
Sbjct: 422 PDGFIQVALQLAYYRLYQR 440
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.3 bits (169), Expect = 1e-12
Identities = 83/500 (16%), Positives = 143/500 (28%), Gaps = 184/500 (36%)
Query: 22 GLLGKYLVLSDD------DKAKTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTN 75
L + + + F D++ P+ P L + K++ V ++
Sbjct: 25 ASFFIASQLQEQFNKILPEPTEGFAADDE-PTTPAE-L---VGKFLGYVSSLVEPSKVGQ 79
Query: 76 VQNLAK----EFKNGI--GQELH---KSLL----KKASEEKNWLSGWWEKYAYLMSR--- 119
+ EF+N G ++H LL + K + Y+ +R
Sbjct: 80 FDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK------NYITARIMA 133
Query: 120 --------DSLI---------PFYNMF---GPNPT--EELGLEYGPGKGVEHASLFC--H 155
+S + +F G EEL L+ H
Sbjct: 134 KRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEEL------------RDLYQTYH 181
Query: 156 ELIKFWFLLRKEKLKP--QLGTGDKPFCMHTF--KKFF-NTARIPGEEIDSIVNYFKTEA 210
L+ E L + + ++ N + P ++ Y +
Sbjct: 182 VLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD------YLLS-I 234
Query: 211 EGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKSKGSGI-AALSCE 269
SCP ++Q H Y + A TP GE S L+ ++ G+ A++
Sbjct: 235 PISCPLIGVIQL-AH-YVVTAKLLGFTP---GE----LRSYLKGAT-GHSQGLVTAVAIA 284
Query: 270 PRSKWA---EN-------------RSY-----------ILQKSAKNKQLIEDIDSAMFSV 302
W + R Y IL+ S +N E + S M S+
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN---EGVPSPMLSI 341
Query: 303 S-LDNTSPTNDSEICQQLISNDYANRY--ADKSVAVVFFKNGA-----SG------GICE 348
S L ++ Q + + N + A K V + NGA SG G+
Sbjct: 342 SNLT------QEQV-QDYV--NKTNSHLPAGKQVEISLV-NGAKNLVVSGPPQSLYGLNL 391
Query: 349 H--------------TPFDGM--------VNVTACF---YVLLSLAENLATISEDKTVRG 383
PF + V + F L I++D
Sbjct: 392 TLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL----LVPASDLINKDLVKNN 447
Query: 384 ------GLEAPVPLEFDTDD 397
++ PV +DT D
Sbjct: 448 VSFNAKDIQIPV---YDTFD 464
Score = 45.8 bits (108), Expect = 2e-05
Identities = 65/402 (16%), Positives = 122/402 (30%), Gaps = 133/402 (33%)
Query: 131 PNPTEELGLEYGPGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFN 190
P PTE + P E F + + + ++G D+ ++ F
Sbjct: 42 PEPTEGFAADDEPTTPAELVGKF----LGY---VSSLVEPSKVGQFDQ--VLNLCLTEFE 92
Query: 191 TARIPGEEIDSIVNYFKTEAEGSCP-SHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFN 249
+ G +I ++ E + + + +++ Y + A P + N
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKN----Y-ITARIMAKRPFD-----KKSN 142
Query: 250 SILQASSKSKGSGIAAL--------SC--EPRSKWAENRSYI---LQKSAKN-KQLIEDI 295
S L + + + A+ E R + + ++ SA+ +LI
Sbjct: 143 SALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTT 202
Query: 296 DSA--MFSVSLD------NTSPTNDSE-----------IC-QQLISNDYAN--RYADKSV 333
A +F+ L+ N S T D + I QL Y + +
Sbjct: 203 LDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH--YVVTAKLLGFTP 260
Query: 334 AVVF-FKNGASG---GICEHTPFDGMVNVTAC----------FYVLLSLA-ENL------ 372
+ + GA+G G+ VTA F+V + A L
Sbjct: 261 GELRSYLKGATGHSQGL-----------VTAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 373 -----------ATISEDKTVRGGLEAPVP------LEFDTDDQITKELSRA----KAEQK 411
+I ED ++ P P L T +Q+ +++ A ++
Sbjct: 310 CYEAYPNTSLPPSILED-SLENNEGVPSPMLSISNL---TQEQVQDYVNKTNSHLPAGKQ 365
Query: 412 ISRYEISAI--RKAF--TGFGKAEITELKLHPDSFVQMALQL 449
+ IS + K +G P S + L L
Sbjct: 366 VE---ISLVNGAKNLVVSG-----------PPQSLYGLNLTL 393
Score = 39.6 bits (92), Expect = 0.002
Identities = 52/285 (18%), Positives = 85/285 (29%), Gaps = 93/285 (32%)
Query: 229 MNALHKDST-PLTV--GE-----------W------KHQFNSILQASSKSKGSGIAALSC 268
M+A ST PLT+ G + + QFN IL ++ A
Sbjct: 1 MDAY---STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEG-----FAADD 52
Query: 269 EPRSK---WAENRSYILQKSAKNKQ---------LIEDIDSA--------MFSVSLDNTS 308
EP + + Y+ +K + + ++ + L +
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQEN 112
Query: 309 PTNDSEICQQLISNDY-----ANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFY 363
T + ++LI N A R DK F+ G F G N F
Sbjct: 113 DTTLVKT-KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYF- 170
Query: 364 VLLSLAENLATISEDKTVRGGLEAPVPLEFDTDDQITKELSRAKAE--QKISRYEISAIR 421
E L + + T + +L + AE ++ R + A
Sbjct: 171 ------EELRDL-----------------YQTYHVLVGDLIKFSAETLSELIRTTLDA-E 206
Query: 422 KAFT-GFG-KAEITELKLHPD---------SFVQMAL-QLAYYTI 454
K FT G + PD S + + QLA+Y +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVV 251
Score = 31.2 bits (70), Expect = 0.98
Identities = 34/203 (16%), Positives = 53/203 (26%), Gaps = 86/203 (42%)
Query: 30 LSDDDKAKTFENDEKLPSLPVPPLDVT------LEKYIQSVKPFATQEE-----LTN--- 75
L + EN+E +PS P L ++ ++ Y+ + L N
Sbjct: 319 LPPSILEDSLENNEGVPS---PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK 375
Query: 76 --------------VQNLAKEF-KNGIGQE---------------L------HKSLLKKA 99
L K +G+ Q L H LL A
Sbjct: 376 NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPA 435
Query: 100 SEE-KNWLSGWWEKYAYLMSRDSLIPFYNMF-GPNPTEELG------------------- 138
S+ L + ++D IP Y+ F G + G
Sbjct: 436 SDLINKDLVKNNVSFN---AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWET 492
Query: 139 ---------LEYGPGKGVEHASL 152
L++GPG L
Sbjct: 493 TTQFKATHILDFGPGGASGLGVL 515
Score = 31.2 bits (70), Expect = 1.00
Identities = 50/273 (18%), Positives = 79/273 (28%), Gaps = 115/273 (42%)
Query: 8 IQSSIREFQKR------GYKG--LLGKYLVLSDDDKAKTFEN--DEKLPSLPV-PPLDVT 56
I + G KG + Y + FE D KL + + ++
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAM-------IFETIVDGKLKTEKIFKEINEH 1713
Query: 57 LEKYIQSVKPFATQEE---LT-NVQ------NLA--KEFK-NGIGQEL-----HKSLLKK 98
Y F +++ T Q A ++ K G+ H SL
Sbjct: 1714 STSYT-----FRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGH-SL--- 1764
Query: 99 ASEEKNWLSGWWEKYAYLMSRDSLIPFYNMF------G-----PNPTEELGLE-YG---- 142
G E YA L S ++ ++ G P +ELG YG
Sbjct: 1765 ---------G--E-YAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAI 1812
Query: 143 -PGKGVEHASLFCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDS 201
PG+ V A+ F E +++ E++ + TG
Sbjct: 1813 NPGR-V--AASFSQEALQYVV----ERVGKR--TGW--LV-------------------E 1842
Query: 202 IVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHK 234
IVNY + + V G + AL
Sbjct: 1843 IVNY-------NVENQQYV-AAGDL---RALDT 1864
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 4e-08
Identities = 57/408 (13%), Positives = 121/408 (29%), Gaps = 118/408 (28%)
Query: 2 KLRKLLIQSSIRE-FQKRGYKGLLGKYLVLSDD--DK--AKTFEN---------DEKLPS 47
KLR IQ+ +R + + Y+ L LVL + + F +++
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCL---LVL-LNVQNAKAWNAFNLSCKILLTTRFKQV-- 277
Query: 48 LPVPPLDVTLEKYIQSV---KPFATQEEL--------TNVQNLAKEFKNGIGQELHKSLL 96
L +I E Q+L +E S++
Sbjct: 278 --TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN--PRRLSII 333
Query: 97 KKASEEKNWLSGW--WEKYAY-------LMSRDSLIP-----FYNMFG--PN----PTEE 136
A ++ L+ W W+ S + L P ++ P PT
Sbjct: 334 --AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 137 LGLEYGPGKGVEHASLFCHELIKFWFLLRKEK------------LKPQLGTGDKPFCMHT 184
L L + + + ++L K+ + ++ K LK +L + + +H
Sbjct: 392 LSLIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL---ENEYALH- 446
Query: 185 FKKFFNTARIP------GEEIDSIVNYFKTEAEGSCPSHVIVQCNG-HIYKMNALHKDST 237
+ + IP + YF SH+ G H+ + + +
Sbjct: 447 -RSIVDHYNIPKTFDSDDLIPPYLDQYFY--------SHI-----GHHLKNIEHPERMT- 491
Query: 238 PLTVGEWKHQFNSI------LQASSKSKGSGIAALSCEPRSKWAEN----RSYILQKSAK 287
F + L+ K + A + + + YI K
Sbjct: 492 ---------LFRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
Query: 288 NKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAV 335
++L+ I + + +N + +++ + + + + + V
Sbjct: 541 YERLVNAILDFLPKIE-ENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Score = 52.2 bits (124), Expect = 3e-07
Identities = 33/274 (12%), Positives = 82/274 (29%), Gaps = 85/274 (31%)
Query: 1 MKLRKLLIQSSIREFQKRGYKGLLGKYLVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKY 60
KL + I+SS+ + Y+ + + LS F +P+ + L
Sbjct: 353 DKLTTI-IESSLNVLEPAEYRKM---FDRLS------VFPPSAHIPT-------ILLSLI 395
Query: 61 IQSVKPFATQEELTNVQN---LAKEFKNGI----------------GQELHKSLLKK--- 98
V + + + K+ K LH+S++
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455
Query: 99 ------ASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASL 152
+L ++ Y+++ +++ E + +L
Sbjct: 456 PKTFDSDDLIPPYLDQYF--YSHIG--------HHLKNIEHPERM-------------TL 492
Query: 153 FCHELIKFWFLLRKEKLK----PQLGTGDKPFCMHTFKKF--FNTARIPGEE--IDSIVN 204
F + F FL ++K++ +G + K + + P E +++I++
Sbjct: 493 FRMVFLDFRFL--EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILD 550
Query: 205 YFKTEAEG--SCPSHVIVQC-----NGHIYKMNA 231
+ E +++ + I++
Sbjct: 551 FLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
Score = 42.9 bits (100), Expect = 2e-04
Identities = 73/544 (13%), Positives = 139/544 (25%), Gaps = 201/544 (36%)
Query: 16 QKRGYKGLLGKYLVLSDDDKAKTFENDEKLPSLPVPPLDVTLEKYIQ-SVKPFATQEELT 74
+ YK +L V D F ++ D K +Q K ++EE+
Sbjct: 14 HQYQYKDIL---SVFEDA-----FVDN----------FDC---KDVQDMPKSILSKEEID 52
Query: 75 NV---------------------QNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKY 113
++ + + ++F + + +K L+ E+ S Y
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 114 AYLMSR----DSLIPFYNMFGPNPTEEL--GLE----------YGP---GKGVEHASLFC 154
R + + YN+ P +L L G GK A C
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVC 171
Query: 155 --HELIK------FWFLLRK-----------EKLKPQLGTGDKPFCMHT----------- 184
+++ FW L+ +KL Q+ H+
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 185 --FKKFFNTARIPGEEI--D-----SIVNYFKTEAEGSCP-------SHVIVQCNGHIYK 228
++ + + N F SC V +
Sbjct: 232 AELRRLLKSKPYENCLLVLLNVQNAKAWNAF----NLSCKILLTTRFKQVTDFLSAATTT 287
Query: 229 MNALHKDSTPLTVGEWKHQFNSILQASSKS------KG-----SGIAALSCEPRSKWAEN 277
+L S LT E K L + S IA + + W +N
Sbjct: 288 HISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW-DN 346
Query: 278 RSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDYANRYADKSVAVVF 337
++ +L I+S SL+ P +Y + VF
Sbjct: 347 WKHV-----NCDKLTTIIES-----SLNVLEP------------AEYRKMFDR---LSVF 381
Query: 338 FKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPLEFDTDD 397
+ ++ +L + + +
Sbjct: 382 PPS---------------AHIPT--ILLSLIWFD-------------------VIKSDVM 405
Query: 398 QITKELSR---AKAEQKISRYEISAIRKAFTGFGKAEITELKLHPDSFVQM-ALQLAYYT 453
+ +L + + + K S I +I ELK+ ++ + + +Y
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSI-----------YLELKVKLENEYALHRSIVDHYN 454
Query: 454 IHNK 457
I
Sbjct: 455 IPKT 458
>1cjw_A Protein (serotonin N-acetyltransferase); HET: COT; 1.80A {Ovis
aries} SCOP: d.108.1.1 PDB: 1b6b_A
Length = 166
Score = 35.6 bits (82), Expect = 0.013
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 86 GIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFG 130
G G L L + + A LM D+L+PFY FG
Sbjct: 105 GKGSVLLWRYLHHVGAQPAV------RRAVLMCEDALVPFYQRFG 143
>1kux_A Aralkylamine, serotonin N-acetyltransferase; enzyme-inhibitor
complex, bisubstrate analog, alternate conformations;
HET: CA3; 1.80A {Ovis aries} SCOP: d.108.1.1 PDB:
1kuv_A* 1kuy_A* 1l0c_A* 1ib1_E*
Length = 207
Score = 35.4 bits (81), Expect = 0.019
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 86 GIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFG 130
G G L L + + A LM D+L+PFY FG
Sbjct: 134 GKGSVLLWRYLHHVGAQPAV------RRAVLMCEDALVPFYQRFG 172
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 32.8 bits (74), Expect = 0.15
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 8/68 (11%)
Query: 238 PLTVGEWKHQFNSILQ---ASSKSKGSGIAALSCEPRSKWAENRSYILQKSAKN-----K 289
P ++ +W+ + LQ A+SK + + +W + +S ++K+ N K
Sbjct: 84 PESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADK 143
Query: 290 QLIEDIDS 297
+ D+
Sbjct: 144 AFYQQPDA 151
Score = 29.4 bits (65), Expect = 1.7
Identities = 20/76 (26%), Positives = 31/76 (40%), Gaps = 14/76 (18%)
Query: 269 EPRS--KWAENRSYILQK--SAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDY 324
EP S KW E + LQ+ +A E + A L+ + +Q+ N
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKA--KKDLEEW----NQRQSEQVEKNKI 136
Query: 325 ANRYADKSVAVVFFKN 340
NR ADK+ F++
Sbjct: 137 NNRIADKA----FYQQ 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.2 bits (72), Expect = 0.18
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 12/40 (30%)
Query: 416 EISAIRKAFTGFGKAEITELKLH-PDSFVQMALQLAYYTI 454
E A++K + LKL+ DS +A++ A T+
Sbjct: 18 EKQALKKL-------Q-ASLKLYADDSAPALAIK-A--TM 46
Score = 29.9 bits (66), Expect = 1.0
Identities = 13/57 (22%), Positives = 20/57 (35%), Gaps = 30/57 (52%)
Query: 2 KLRKLLIQSSIREFQKRGYKGLLGKYLVLSDDDKAKTFENDEKLPSLPVPPLDVTLE 58
L+KL Q+S++ Y DD A P+L + T+E
Sbjct: 21 ALKKL--QASLK------------LY----ADDSA---------PALAI---KATME 47
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 31.0 bits (70), Expect = 0.97
Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 25/93 (26%)
Query: 335 VVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKT---VRGGLEAPVPL 391
V +SG I TP V AC + S+ + TI K + GG +
Sbjct: 1088 VNMLLISSSGPI--KTP------VGACATSVESVDIGVETILSGKARICIVGGYDDFQEE 1139
Query: 392 ---EF-------DTDDQITKELSRAKAEQKISR 414
EF +T + E + ++SR
Sbjct: 1140 GSFEFGNMKATSNTLE----EFEHGRTPAEMSR 1168
>2bv1_A Regulator of G-protein signalling 1; RGS1, RGS, structural
genomics, struct genomics consortium, B-cell activation,
phosphorylation; 2.0A {Homo sapiens} PDB: 2gtp_C*
Length = 145
Score = 29.5 bits (66), Expect = 1.0
Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 4/86 (4%)
Query: 153 FCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEG 212
F E I+FW E K +K F ++ ID +
Sbjct: 47 FSEENIEFWLAC--EDYKKTESDLLPCKAEEIYKAFVHSDAAKQINIDFRTRESTAKKIK 104
Query: 213 SCPSHVIVQCNGHIYKMNALHKDSTP 238
+ + IY + + KDS P
Sbjct: 105 APTPTCFDEAQKVIYTL--MEKDSYP 128
>1uzg_A Major envelope protein E; viral protein, membrane fusion,
flavivirus, fusion loop, CLA fusion protein,
glycoprotein; HET: NAG FUL BMA MAN; 3.50A {Dengue virus
type 3} PDB: 3g7t_A
Length = 392
Score = 30.7 bits (69), Expect = 1.1
Identities = 23/122 (18%), Positives = 38/122 (31%), Gaps = 8/122 (6%)
Query: 201 SIVNYFKTEAEGSCPSHVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKS-- 258
S+V K + S ++ N + +H E + I +S +
Sbjct: 112 SLVTCAKFQCLESIEGKIVQHENLKYTVIITVHTGDQHQVGNETQGVTAEITSQASTAEA 171
Query: 259 --KGSGIAALSCEPRSKWAENRSYILQKSAK----NKQLIEDIDSAMFSVSLDNTSPTND 312
G L C PR+ N +L K ++Q D+ S + T N
Sbjct: 172 ILPEYGTLGLECSPRTGLDFNEMILLTMKDKAWMVHRQWFFDLPLPWTSGATTKTPTWNR 231
Query: 313 SE 314
E
Sbjct: 232 KE 233
>3s6f_A Hypothetical acetyltransferase; acyl-COA N-acyltransferases,
structural genomics, joint CENT structural genomics,
JCSG; HET: MSE COA; 1.19A {Deinococcus radiodurans}
Length = 145
Score = 29.1 bits (65), Expect = 1.5
Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 9/45 (20%)
Query: 86 GIGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFG 130
G+G EL + +L + + L D ++PFY G
Sbjct: 89 GLGSELMRRVLTELGDLYMV---------DLSCDDDVVPFYERLG 124
>2arh_A Hypothetical protein AQ_1966; structural genomics, PSI, protein
STRU initiative, midwest center for structural genomics,
MCSG, U function; 2.46A {Aquifex aeolicus} SCOP:
d.108.1.9
Length = 203
Score = 29.4 bits (65), Expect = 2.1
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 61 IQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWL 106
IQ+ KP + + +++NL KEF+ IG+ + L+KK E N+L
Sbjct: 152 IQAEKPKTEEAKKRHLENLKKEFEEFIGKCEDEGLIKKVKERYNFL 197
>2a72_A Regulator of G-protein signalling 7; human RGS7, regulator of
G-protein signaling 7, GTPase-activ proteins (GAP),
structural genomics; 2.00A {Homo sapiens} PDB: 2d9j_A
2es0_A
Length = 146
Score = 28.4 bits (63), Expect = 3.1
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 4/86 (4%)
Query: 153 FCHELIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEG 212
F E ++FW + K +P + +++F +DS T
Sbjct: 38 FSSENLRFWLAVEDLKKRPIKEVPSR--VQEIWQEFLAPGAPSAINLDSKSYDKTTHNVK 95
Query: 213 SCPSHVIVQCNGHIYKMNALHKDSTP 238
+ HIYK+ + DS P
Sbjct: 96 EPGRYTFEDAQEHIYKL--MKSDSYP 119
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 140
Score = 28.0 bits (62), Expect = 3.9
Identities = 17/87 (19%), Positives = 28/87 (32%), Gaps = 5/87 (5%)
Query: 153 FCHELIKFWFLLRKEKLKPQLGTGD-KPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAE 211
F E I+FW + E K G ++KF T +D T +
Sbjct: 40 FSEENIEFW--IACEDFKKSKGPQQIHLKAKAIYEKFIQTDAPKEVNLDFHTKEVITNSI 97
Query: 212 GSCPSHVIVQCNGHIYKMNALHKDSTP 238
H +Y++ + +DS
Sbjct: 98 TQPTLHSFDAAQSRVYQL--MEQDSYT 122
>1p58_A Major envelope protein E; flavivirus, flaviviridae, glycoprotein E
from borne encephalitis virus, membrane protein M,
cryo-EM, ICOS virus; 9.50A {Dengue virus 2 puerto rico}
SCOP: i.17.1.1
Length = 495
Score = 28.8 bits (64), Expect = 4.7
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 262 GIAALSCEPRSKWAENRSYILQKSAK----NKQLIEDIDSAMFSVSLDNTSPTNDSE 314
G + C PR+ N +LQ K ++Q D+ + S E
Sbjct: 179 GTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKE 235
>1ok8_A Major envelope protein E; viral protein, membrane fusion,
flavivirus, fusion peptide, low-PH conformational
change, class 2 fusion protein,; HET: NAG; 2.0A {Dengue
virus type 2} SCOP: b.1.18.4 f.10.1.1 PDB: 1oan_A*
1oke_A* 2b6b_A 1tge_A 1tg8_A* 1thd_A 3c5x_A* 3c6e_A*
3c6d_A 3c6r_A 3ixy_A 3iya_A 2r6p_A 2jsf_A 2r29_A 2r69_A
Length = 394
Score = 28.4 bits (63), Expect = 5.4
Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 262 GIAALSCEPRSKWAENRSYILQKSAK----NKQLIEDIDSAMFSVSLDNTSPTNDSE 314
G + C PR+ N +LQ K ++Q D+ + S E
Sbjct: 179 GTVTMECSPRTGLDFNEMVLLQMKDKAWLVHRQWFLDLPLPWLPGADTQGSNWIQKE 235
>3n91_A Uncharacterized protein; domain of unknown function (DUF1735),
structural genomics, J center for structural genomics,
JCSG; HET: 2PE; 2.40A {Bacteroides ovatus}
Length = 323
Score = 27.8 bits (61), Expect = 7.1
Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 3/79 (3%)
Query: 322 NDYANRYADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTV 381
N + Y + + G S I H F + N S+ +NL T+
Sbjct: 176 NPWHGEYLRRGIDHAT-VAGTSKDIIRHEQF--VENDEVVNISTKSMKDNLLTLKTKDES 232
Query: 382 RGGLEAPVPLEFDTDDQIT 400
+ V L F D T
Sbjct: 233 GKDISYTVRLSFAEDGSCT 251
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0554 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,787,884
Number of extensions: 397866
Number of successful extensions: 1184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1156
Number of HSP's successfully gapped: 39
Length of query: 457
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 360
Effective length of database: 3,993,456
Effective search space: 1437644160
Effective search space used: 1437644160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.9 bits)