RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17649
(457 letters)
>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 382
Score = 338 bits (867), Expect = e-114
Identities = 135/378 (35%), Positives = 213/378 (56%), Gaps = 8/378 (2%)
Query: 37 KTFENDEKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLL 96
+TF+ + LPSLPVP L+ +L+KY++SVKPFA ++E + + ++F+ G G+ LH+ LL
Sbjct: 2 RTFQYQDSLPSLPVPALEESLKKYLESVKPFANEDEYKKTEEIVQKFQEGAGKRLHQKLL 61
Query: 97 KKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHE 156
++A ++NWL WW AYL R N GP P E G +E S+
Sbjct: 62 ERARGKRNWLEEWWLNVAYLDVRIPSQLNVNFVGPCPHFEHYWPAREGTQLERGSMMLWH 121
Query: 157 LIKFWFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPS 216
+ +W LLR+EKL +G+ P M+ F+ F+T ++PG DSI+NYFKTE+EG CP+
Sbjct: 122 NLNYWQLLRREKLPVHK-SGNTPLDMNQFRMLFSTCKVPGITRDSIMNYFKTESEGHCPT 180
Query: 217 HVIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQ-ASSKSKGSGIAALSCEPRSKWA 275
H+ V C G + + LH + +T E Q I + S++ G IAAL+ E R++WA
Sbjct: 181 HIAVLCRGRAFVFDVLH-EGCLITPPELLRQLTYIHKKCSNEPVGPSIAALTSEERTRWA 239
Query: 276 ENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTND----SEICQQLISNDYANRYADK 331
+ R Y++ +N L+E I +++F S++++SP S++ + L+ D + R+ DK
Sbjct: 240 KAREYLISLDPENLTLLEKIQTSLFVYSIEDSSPHATPEEYSQVFEMLLGGDPSVRWGDK 299
Query: 332 SVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVPL 391
S ++ F NG G C+H P+D MV V YV + E + VR + P L
Sbjct: 300 SYNLISFANGIFGCCCDHAPYDAMVMVNIAHYVDERVLETEGRWKGSEKVR-DIPLPEEL 358
Query: 392 EFDTDDQITKELSRAKAE 409
F D++I ++S+AKA+
Sbjct: 359 VFTVDEKILNDVSQAKAQ 376
>d1nm8a1 c.43.1.3 (A:9-385) Carnitine acetyltransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 377
Score = 302 bits (774), Expect = e-100
Identities = 97/377 (25%), Positives = 184/377 (48%), Gaps = 24/377 (6%)
Query: 43 EKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEFK--NGIGQELHKSLLKKAS 100
+ LP LPVPPL +L+ Y+++++P ++EE + + L EF+ G+G+ L K L ++A
Sbjct: 4 DPLPRLPVPPLQQSLDHYLKALQPIVSEEEWAHTKQLVDEFQASGGVGERLQKGLERRAR 63
Query: 101 EEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKF 160
+ +NWLS WW K AYL R ++ + + P ++ G + A+ ++ F
Sbjct: 64 KTENWLSEWWLKTAYLQYRQPVVIYSSPGVMLPKQDFVDLQGQ---LRFAAKLIEGVLDF 120
Query: 161 WFLLRKEKLKPQLGTGDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIV 220
++ E L + G KP CM+ + + ++ R+PG + D++ N+ KT+ P+H+ V
Sbjct: 121 KVMIDNETLPVEY-LGGKPLCMNQYYQILSSCRVPGPKQDTVSNFSKTK---KPPTHITV 176
Query: 221 QCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSKSKGSGIAALSCEPRSKWAENRSY 280
N ++++ H D TPLT + Q I +S ++ + L+ R+ WA+ +
Sbjct: 177 VHNYQFFELDVYHSDGTPLTADQIFVQLEKIWNSSLQTNKEPVGILTSNHRNSWAKAYNT 236
Query: 281 ILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEICQQLISNDY----------ANRYAD 330
+++ N+ + I ++F+V LD T P ++ + ++ NR+ D
Sbjct: 237 LIK-DKVNRDSVRSIQKSIFTVCLDATMPRVSEDVYRSHVAGQMLHGGGSRLNSGNRWFD 295
Query: 331 KSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAPVP 390
K++ + ++G+ G + EH +G VT YV+ + S L P
Sbjct: 296 KTLQFIVAEDGSCGLVYEHAAAEGPPIVTLLDYVIEYTKKPELVRSPMVP----LPMPKK 351
Query: 391 LEFDTDDQITKELSRAK 407
L F+ +I ++ +AK
Sbjct: 352 LRFNITPEIKSDIEKAK 368
>d1t1ua1 c.43.1.3 (A:20-401) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 382
Score = 292 bits (749), Expect = 3e-96
Identities = 96/379 (25%), Positives = 171/379 (45%), Gaps = 22/379 (5%)
Query: 43 EKLPSLPVPPLDVTLEKYIQSVKPFATQEELTNVQNLAKEF--KNGIGQELHKSLLKKAS 100
LP LPVPPL TL Y+Q ++ +E+ Q + K F G+G+ L + LL++
Sbjct: 2 LDLPKLPVPPLQQTLATYLQCMQHLVPEEQFRKSQAIVKRFGAPGGLGETLQEKLLERQE 61
Query: 101 EEKNWLSGWWEKYAYLMSRDSLIPFYNMFGPNPTEELGLEYGPGKGVEHASLFCHELIKF 160
+ NW+S +W YL +R +L + + + A+ ++ +
Sbjct: 62 KTANWVSEYWLNDMYLNNRLALPVNSSPAVIFARQHF---QDTNDQLRFAACLISGVLSY 118
Query: 161 WFLLRKEKLKPQLGT---GDKPFCMHTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSH 217
LL L +P CM + + F++ R+PG D++V + P H
Sbjct: 119 KTLLDSHSLPTDWAKGQLSGQPLCMKQYYRLFSSYRLPGHTQDTLVAQ--KSSIMPEPEH 176
Query: 218 VIVQCNGHIYKMNALHKDSTPLTVGEWKHQFNSILQASSK--SKGSGIAALSCEPRSKWA 275
VIV C + ++ + + L+ G+ Q I++ +S + I L+ + RS+WA
Sbjct: 177 VIVACCNQFFVLDVVI-NFRRLSEGDLFTQLRKIVKMASNEDERLPPIGLLTSDGRSEWA 235
Query: 276 ENRSYILQKSAKNKQLIEDIDSAMFSVSLDNTSPTNDSEI--CQQLI-----SNDYANRY 328
+ R+ +L K + N+ ++ I+ + V LD S+ QL+ S + ANR+
Sbjct: 236 KARTVLL-KDSTNRDSLDMIERCICLVCLDGPGTGELSDTHRALQLLHGGGCSLNGANRW 294
Query: 329 ADKSVAVVFFKNGASGGICEHTPFDGMVNVTACFYVLLSLAENLATISEDKTVRGGLEAP 388
DKS+ V ++G G +CEH+PFDG+V V ++L + + + +V L AP
Sbjct: 295 YDKSLQFVVGRDGTCGVVCEHSPFDGIVLVQCTEHLLKHMMTSNKKLVRADSVS-ELPAP 353
Query: 389 VPLEFDTDDQITKELSRAK 407
L + + L+ +
Sbjct: 354 RRLRWKCSPETQGHLASSA 372
>d1xl7a2 c.43.1.3 (A:393-610) Peroxisomal carnitine
O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
10090]}
Length = 218
Score = 60.7 bits (147), Expect = 3e-11
Identities = 20/34 (58%), Positives = 25/34 (73%)
Query: 424 FTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457
FT FGK E LHPD+F+Q+ALQLAYY +H +
Sbjct: 9 FTSFGKKLTKEEALHPDTFIQLALQLAYYRLHGR 42
>d1nm8a2 c.43.1.3 (A:386-599) Carnitine acetyltransferase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 214
Score = 60.3 bits (146), Expect = 4e-11
Identities = 19/34 (55%), Positives = 23/34 (67%)
Query: 424 FTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457
F FGK KL PD+F+QMALQLAYY I+ +
Sbjct: 8 FHHFGKDFPKSEKLSPDAFIQMALQLAYYRIYGQ 41
>d1t1ua2 c.43.1.3 (A:402-616) Choline O-acetyltransferase {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 215
Score = 60.3 bits (146), Expect = 4e-11
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 424 FTGFGKAEITELKLHPDSFVQMALQLAYYTIHNK 457
F +GK I + K PD F+Q+ALQLAYY ++ +
Sbjct: 7 FDNYGKTFIKKQKYSPDGFIQVALQLAYYRLYQR 40
>d2arha1 d.108.1.9 (A:1-196) Hypothetical protein Aq_1966 {Aquifex
aeolicus [TaxId: 63363]}
Length = 196
Score = 29.1 bits (65), Expect = 0.75
Identities = 17/46 (36%), Positives = 28/46 (60%)
Query: 61 IQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWL 106
IQ+ KP + + +++NL KEF+ IG+ + L+KK E N+L
Sbjct: 150 IQAEKPKTEEAKKRHLENLKKEFEEFIGKCEDEGLIKKVKERYNFL 195
>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H
nitroreductase {Escherichia coli, minor form, NfnB
[TaxId: 562]}
Length = 216
Score = 29.2 bits (64), Expect = 0.86
Identities = 12/73 (16%), Positives = 20/73 (27%), Gaps = 6/73 (8%)
Query: 183 HTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHI-YKMNALHKDSTPLTV 241
H+ K F + ++ E+ + I PS Q I
Sbjct: 10 HSTKAFDASKKLTPEQAEQIK-----TLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAA 64
Query: 242 GEWKHQFNSILQA 254
G + +L A
Sbjct: 65 GNYVFNERKMLDA 77
>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase)
{Vibrio fischeri [TaxId: 668]}
Length = 217
Score = 28.0 bits (61), Expect = 1.8
Identities = 12/74 (16%), Positives = 26/74 (35%), Gaps = 6/74 (8%)
Query: 183 HTFKKFFNTARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHI-YKMNALHKDSTPLTV 241
+T KK+ + ++ E++ ++ EA S + Q I + +A +
Sbjct: 12 YTSKKYDPSKKVSQEDLAVLL-----EALRLSASSINSQPWKFIVIESDAAKQRMHDSFA 66
Query: 242 GEWKHQFNSILQAS 255
+ I S
Sbjct: 67 NMHQFNQPHIKACS 80
>d2cmza1 e.76.1.2 (A:1-409) Spike glycoprotein {Vesicular stomatitis
indiana virus [TaxId: 11277]}
Length = 409
Score = 28.0 bits (62), Expect = 2.7
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 402 ELSRAKAEQKISRYEISAIRKAFTGFGKA 430
S+ +A IS ++S + G G A
Sbjct: 287 TWSKIRAGLPISPVDLSYLAPKNPGTGPA 315
>d2choa2 c.1.8.10 (A:127-436) Glucosaminidase GH84, catalytic domain
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 310
Score = 27.6 bits (61), Expect = 3.5
Identities = 13/96 (13%), Positives = 35/96 (36%), Gaps = 3/96 (3%)
Query: 243 EWKHQFNSILQASSKSKGSGIAALSCEPRSKWAENRSYILQKSAKNKQLIEDIDSAMFSV 302
+ Q ++ +++++ + A+ P N+ AK +++ + F+V
Sbjct: 57 KEAAQLQELVAVANENEVDFVWAIH--PGQDIKWNKEDRDLLLAKFEKMY-QLGVRSFAV 113
Query: 303 SLDNTSPTNDSEICQQLISNDYANRYADKSVAVVFF 338
D+ S + Q + N ++A +
Sbjct: 114 FFDDISGEGTNPQKQAELLNYIDEKFAQVKPDINQL 149
>d1avca1 a.65.1.1 (A:10-350) Annexin VI {Cow (Bos taurus) [TaxId:
9913]}
Length = 341
Score = 27.3 bits (60), Expect = 4.2
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 419 AIRKAFTGFG--KAEITELKLHPDSFVQMALQLAYYTIHNK 457
+ A GFG K I L + + + Y +++ K
Sbjct: 19 TLYNAMKGFGSDKEAIINLITSRSNKQRQEICQNYKSLYGK 59
>d1y7ra1 d.108.1.1 (A:1-133) Hypothetical protein SA2161
{Staphylococcus aureus [TaxId: 1280]}
Length = 133
Score = 26.2 bits (57), Expect = 4.5
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 5/86 (5%)
Query: 54 DVTLEKYIQSVKPFATQEELTNVQNLAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKY 113
L + + T ++ ++ L G + + ++K Y
Sbjct: 47 KDRLIGMGRVIGDGGTVFQIVDIAVLKSYQGQAYGSLIMEHIMKYIKNV-----SVESVY 101
Query: 114 AYLMSRDSLIPFYNMFGPNPTEELGL 139
L++ Y FG PTE
Sbjct: 102 VSLIADYPADKLYVKFGFMPTEPDSG 127
>d1t6sa2 a.4.5.60 (A:86-162) Segregation and condensation protein B,
ScpB {Chlorobium tepidum [TaxId: 1097]}
Length = 77
Score = 25.1 bits (55), Expect = 5.2
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 8/31 (25%)
Query: 399 ITKELSRAKAE--------QKISRYEISAIR 421
I + LSR+ E Q +++ EI IR
Sbjct: 3 IQRRLSRSMLEVLAVVAWHQPVTKGEIQQIR 33
>d1g7da_ a.71.1.1 (A:) Endoplasmic reticulum protein ERP29,
C-terminal domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 106
Score = 25.5 bits (56), Expect = 6.5
Identities = 8/36 (22%), Positives = 19/36 (52%)
Query: 79 LAKEFKNGIGQELHKSLLKKASEEKNWLSGWWEKYA 114
LA +F +E +++LK+ + + + +K+A
Sbjct: 10 LAGQFIEASSREARQAILKQGQDGLSGVKETDKKWA 45
>d2ie7a1 a.65.1.1 (A:2-319) Annexin V {Rat (Rattus norvegicus)
[TaxId: 10116]}
Length = 318
Score = 26.1 bits (57), Expect = 8.5
Identities = 8/41 (19%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 419 AIRKAFTGFG--KAEITELKLHPDSFVQMALQLAYYTIHNK 457
+RKA G G + I L + + + + T+ +
Sbjct: 20 VLRKAMKGLGTDEDSILNLLTARSNAQRQQIAEEFKTLFGR 60
>d1dm5a_ a.65.1.1 (A:) Annexin XII {Hydra vulgaris [TaxId: 6087]}
Length = 315
Score = 26.1 bits (57), Expect = 8.9
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 419 AIRKAFTGFGKAE--ITELKLHPDSFVQMALQLAYYTIHNK 457
+RKA G G E IT + + + ++ Y T+ K
Sbjct: 20 TLRKAMKGIGTDEKSITHILATRSNAQRQQIKTDYTTLFGK 60
>d1ybha1 c.31.1.3 (A:281-459) Acetohydroxyacid synthase catalytic
subunit {Thale cress (Arabidopsis thaliana), chloroplast
[TaxId: 3702]}
Length = 179
Score = 25.7 bits (55), Expect = 9.5
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 87 IGQELHKSLLKKASEEKNWLSGWWEKYAYLMSRDSLIPFYNMFG 130
Q ++K L +A E K W + + L + FG
Sbjct: 138 ALQGMNKVLENRAEELKLDFGVWRNELNVQKQKFPLS--FKTFG 179
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea
mays) [TaxId: 4577]}
Length = 289
Score = 26.0 bits (57), Expect = 9.7
Identities = 9/63 (14%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 192 ARIPGEEIDSIVNYFKTEAEGSCPSHVIVQCNGHIYK------MNALHKDSTPLTVGEWK 245
A P E++ V+ + + + + Q N I + + + +W
Sbjct: 199 AATPSEDVFYAVSLLFSSVAPNDLARLQEQ-NRRILRFCDLAGIQYKTYLARHTDRSDWV 257
Query: 246 HQF 248
F
Sbjct: 258 RHF 260
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.133 0.392
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,678,749
Number of extensions: 77893
Number of successful extensions: 232
Number of sequences better than 10.0: 1
Number of HSP's gapped: 217
Number of HSP's successfully gapped: 27
Length of query: 457
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 369
Effective length of database: 1,199,356
Effective search space: 442562364
Effective search space used: 442562364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.9 bits)