BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1765
(867 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2FFU|A Chain A, Crystal Structure Of Human Ppgalnact-2 Complexed With Udp
And Ea2
pdb|2FFV|A Chain A, Human Ppgalnact-2 Complexed With Manganese And Udp
pdb|2FFV|B Chain B, Human Ppgalnact-2 Complexed With Manganese And Udp
Length = 501
Score = 290 bits (743), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 141/283 (49%), Positives = 190/283 (67%), Gaps = 14/283 (4%)
Query: 147 LLHEIILVNDFSEYPSN--LHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATG 204
L+ EIILV+D+S P + L G++E +V + R +REGL+R+R+ GA A
Sbjct: 97 LIKEIILVDDYSNDPEDGALLGKIE---------KVRVLRNDRREGLMRSRVRGADAAQA 147
Query: 205 KVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWG 263
KVL FLDSH E N HWLEPLL +AE V PIID+IN D FQY +SA ++GGF+W
Sbjct: 148 KVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWN 207
Query: 264 LHFKWENL-PKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLE 322
L FKW+ + P+ + + + PI +P +AGGLF +D+ YF+ LG+YD +++WGGENLE
Sbjct: 208 LVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYFEELGKYDMMMDVWGGENLE 267
Query: 323 LSFRIWMCGGSLAMIPCSRIGHVFRSRRPYN-NGHNEDPLTRNSLRVAHVWMDEYIEHFL 381
+SFR+W CGGSL +IPCSR+GHVFR + PY G + RN+ R A VWMDEY +
Sbjct: 268 ISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYY 327
Query: 382 KQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILP 424
P ARN+ YG++ R +LR +L CK FKWYL+NVYPE+ +P
Sbjct: 328 AAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRVP 370
Score = 93.2 bits (230), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 85/143 (59%), Gaps = 17/143 (11%)
Query: 1 MVLNEQDLITRDEGYRYYGFNALISNKLSLDRKIPDTRNSLCANQTFPSTLPSTSVIICF 60
MV + QD R++ FN + S+KL +DR IPDTR+ C + + LP+TSV+I F
Sbjct: 21 MVRSGQDPYARNK------FNQVESDKLRMDRAIPDTRHDQCQRKQWRVDLPATSVVITF 74
Query: 61 YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSN--LHGEVETFVKGLNDGRVHL 118
+NE + L R+V ++L ++ L+ EIILV+D+S P + L G++E +V +
Sbjct: 75 HNEARSALLRTVVSVLKKSPPHLIKEIILVDDYSNDPEDGALLGKIE---------KVRV 125
Query: 119 YRTSKREGLIRARMFGAKYATGK 141
R +REGL+R+R+ GA A K
Sbjct: 126 LRNDRREGLMRSRVRGADAAQAK 148
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 54/170 (31%), Positives = 77/170 (45%), Gaps = 20/170 (11%)
Query: 455 NSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMIL 514
N+ R A VWMDEY + P ARN+ YG++ R +LR +L CK FKWYL+NVYPE+ +
Sbjct: 310 NTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVYPELRV 369
Query: 515 PSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIR---------------LSSTDLCL 559
P D + + Q A + + DLCL
Sbjct: 370 P--DHQDIAFGALQQGTNCLDTLGHFADGVVGVYECHNAGGNQEWALTKEKSVKHMDLCL 427
Query: 560 TSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELV--LAELLCLDAGATK 607
T VD+ GS + L+ C E Q W + + + + + LCLD+ K
Sbjct: 428 TV-VDRAPGSLIKLQGCRENDSRQKWEQIEGNSKLRHVGSNLCLDSRTAK 476
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 64/158 (40%), Gaps = 38/158 (24%)
Query: 626 LRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGT 685
L CK FKWYL+NVYPE+ +P D + ++Q + + HF + G
Sbjct: 351 LSCKPFKWYLENVYPELRVP----DHQDIAFGALQQG------TNCLDTLGHFADGVVGV 400
Query: 686 -----------------------DLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSE 722
DLCLT VD+ GS + L+ C E Q+W + + +
Sbjct: 401 YECHNAGGNQEWALTKEKSVKHMDLCLTV-VDRAPGSLIKLQGCRENDSRQKWEQIEGNS 459
Query: 723 LV--LAELLCLDAGATKPKLTKCHEMGG--SQEWNFVL 756
+ + LCLD+ K G SQ+W F L
Sbjct: 460 KLRHVGSNLCLDSRTAKSGGLSVEVCGPALSQQWKFTL 497
Score = 30.0 bits (66), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 51/114 (44%), Gaps = 26/114 (22%)
Query: 612 KCHEMGGSQEYWCWLRCKSFKW------YLDNVYPEMI-LPSDDEDRLKKKWAQVEQPKF 664
+CH GG+QE W + KS K +D +I L E+ ++KW Q+E
Sbjct: 402 ECHNAGGNQE-WALTKEKSVKHMDLCLTVVDRAPGSLIKLQGCRENDSRQKWEQIE---- 456
Query: 665 QPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKT 718
+ +R G++LCL S+ K+ G L ++ C + +Q+W T
Sbjct: 457 -----------GNSKLRHVGSNLCLDSRTAKSGG--LSVEVCGP-ALSQQWKFT 496
>pdb|1XHB|A Chain A, The Crystal Structure Of Udp-Galnac: Polypeptide Alpha-N-
Acetylgalactosaminyltransferase-T1
Length = 472
Score = 275 bits (703), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 135/281 (48%), Positives = 184/281 (65%), Gaps = 5/281 (1%)
Query: 147 LLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKV 206
++ EI+LV+D SE L +ES+VK L VH+ R +R GLIRAR+ GA + G+V
Sbjct: 60 MIEEIVLVDDASER-DFLKRPLESYVKKLKVP-VHVIRMEQRSGLIRARLKGAAVSRGQV 117
Query: 207 LVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS-SALVRGGFNWGLH 265
+ FLD+H E WLEPLL I TV PIID+I+ DTF+Y + S + GGFNW L+
Sbjct: 118 ITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLN 177
Query: 266 FKWENLPKGTLNSSE-DFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELS 324
F+W +P+ ++ + D P+ +PTMAGGLF+IDR YF +G YDAG++IWGGENLE+S
Sbjct: 178 FRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEIS 237
Query: 325 FRIWMCGGSLAMIPCSRIGHVFRSRRPYN-NGHNEDPLTRNSLRVAHVWMDEYIEHFLKQ 383
FRIW CGG+L ++ CS +GHVFR PY G + +N+ R+A VWMDE+ F
Sbjct: 238 FRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYII 297
Query: 384 RPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILP 424
P +DYGD++ R LR +L CK F WYL+N+YP+ +P
Sbjct: 298 SPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIP 338
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 47/117 (40%), Positives = 76/117 (64%), Gaps = 2/117 (1%)
Query: 25 SNKLSLDRKIPDTRNSLCANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLL 84
S ++L+R +PD R C + +P LP+TSV+I F+NE +TL R+V ++++R+ + ++
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMI 61
Query: 85 HEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYATGK 141
EI+LV+D SE L +E++VK L VH+ R +R GLIRAR+ GA + G+
Sbjct: 62 EEIVLVDDASER-DFLKRPLESYVKKLKVP-VHVIRMEQRSGLIRARLKGAAVSRGQ 116
Score = 79.3 bits (194), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 52/168 (30%), Positives = 76/168 (45%), Gaps = 30/168 (17%)
Query: 455 NSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMIL 514
N+ R+A VWMDE+ F P +DYGD++ R LR +L CK F WYL+N+YP+ +
Sbjct: 278 NNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQI 337
Query: 515 PSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLK 574
P R+Y S IR T+ CL + K + + +
Sbjct: 338 P--------------------------RHYFSLGEIRNVETNQCLDNMARK-ENEKVGIF 370
Query: 575 KCDELSKTQHWSKTDKSELVLAELLCLDAGATKPKLT--KCHEMGGSQ 620
C + Q +S T E + + LCLD +T KCH + G+Q
Sbjct: 371 NCHGMGGNQVFSYTANKE-IRTDDLCLDVSKLNGPVTMLKCHHLKGNQ 417
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 68/174 (39%), Gaps = 31/174 (17%)
Query: 626 LRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGT 685
L+CK F WYL+N+YP+ +P R+Y S IR T
Sbjct: 319 LQCKPFSWYLENIYPDSQIP--------------------------RHYFSLGEIRNVET 352
Query: 686 DLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGATKPKLT--KC 743
+ CL + K + + + C + Q +S T E + + LCLD +T KC
Sbjct: 353 NQCLDNMARK-ENEKVGIFNCHGMGGNQVFSYTANKE-IRTDDLCLDVSKLNGPVTMLKC 410
Query: 744 HEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKDTSWDL 797
H + G+Q W + K + + CL ++ V + C + W L
Sbjct: 411 HHLKGNQLWEYDPV-KLTLQHVNSNQCLDKATEEDSQVPSIRDCTGSRSQQWLL 463
>pdb|2D7I|A Chain A, Crsytal Structure Of Pp-Galnac-T10 With Udp, Galnac And
Mn2+
pdb|2D7R|A Chain A, Crystal Structure Of Pp-galnac-t10 Complexed With
Galnac-ser On Lectin Domain
Length = 570
Score = 259 bits (662), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 131/273 (47%), Positives = 176/273 (64%), Gaps = 8/273 (2%)
Query: 147 LLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKV 206
L+ EI+LV+DFS+ +L +E ++ + V + RT KREGLIR RM GA ATG V
Sbjct: 143 LVAEIVLVDDFSDR-EHLKKPLEDYMALFPS--VRILRTKKREGLIRTRMLGASVATGDV 199
Query: 207 LVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSA--LVRGGFNWGL 264
+ FLDSH E N +WL PLL IA T+ P+ID+I+ D F+Y + A +RG F+W +
Sbjct: 200 ITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEM 259
Query: 265 HFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELS 324
++K +P D P SP MAGGLFA+DR++F LG YD GLEIWGGE E+S
Sbjct: 260 YYK--RIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWELGGYDPGLEIWGGEQYEIS 317
Query: 325 FRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEYIEHFLKQR 384
F++WMCGG + IPCSR+GH++R PY L RN RVA VWMDEY E+ ++R
Sbjct: 318 FKVWMCGGRMEDIPCSRVGHIYRKYVPYKVPAGVS-LARNLKRVAEVWMDEYAEYIYQRR 376
Query: 385 PEARNIDYGDVTDRKQLRARLGCKSFKWYLDNV 417
PE R++ GDV +K+LR+ L CKSFKW++ +
Sbjct: 377 PEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKI 409
Score = 108 bits (269), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/129 (44%), Positives = 86/129 (66%), Gaps = 3/129 (2%)
Query: 12 DEGYRYYGFNALISNKLSLDRKIPDTRNSLCANQTFPSTLPSTSVIICFYNEHPATLYRS 71
D+ YR GFN +S+K+SL+R +PD R+ C ++ + TLP+TS+II F+NE ++L R+
Sbjct: 72 DQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSIIIPFHNEGWSSLLRT 131
Query: 72 VQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRAR 131
V ++L+R+ L+ EI+LV+DFS+ +L +E ++ V + RT KREGLIR R
Sbjct: 132 VHSVLNRSPPELVAEIVLVDDFSDR-EHLKKPLEDYMALFPS--VRILRTKKREGLIRTR 188
Query: 132 MFGAKYATG 140
M GA ATG
Sbjct: 189 MLGASVATG 197
Score = 73.6 bits (179), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 58/179 (32%), Positives = 77/179 (43%), Gaps = 35/179 (19%)
Query: 455 NSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMIL 514
N RVA VWMDEY E+ ++RPE R++ GDV +K+LR+ L CKSFKW++ + +
Sbjct: 356 NLKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWD--- 412
Query: 515 PSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLK 574
L K + VE P + IR T LC +K GSPL L+
Sbjct: 413 -------LPKFYPPVEPPA-----------AAWGEIRNVGTGLCADTK-HGALGSPLRLE 453
Query: 575 KCDELSKTQHWSKTDKSELVLAELL-----------CLDA-GATKP-KLTKCHEMGGSQ 620
C W+ E + C DA T P L CH M G+Q
Sbjct: 454 GCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFDAISHTSPVTLYDCHSMKGNQ 512
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 67/175 (38%), Gaps = 39/175 (22%)
Query: 626 LRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGT 685
L CKSFKW++ + + L K + VE P + IR GT
Sbjct: 397 LNCKSFKWFMTKIAWD----------LPKFYPPVEPPA-----------AAWGEIRNVGT 435
Query: 686 DLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELL-----------CLDA- 733
LC +K GSPL L+ C W+ E + C DA
Sbjct: 436 GLCADTK-HGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFDAI 494
Query: 734 GATKP-KLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMC 787
T P L CH M G+Q W + +DKT +Y P +G+C+ + I M C
Sbjct: 495 SHTSPVTLYDCHSMKGNQLWKY-RKDKT-LYHPVSGSCMDCSE--SDHRIFMNTC 545
>pdb|1XYF|A Chain A, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1XYF|B Chain B, Endo-1,4-Beta-Xylanase From Streptomyces Olivaceoviridis
pdb|1ISV|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISV|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylose
pdb|1ISW|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISW|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylobiose
pdb|1ISX|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISX|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Xylotriose
pdb|1ISY|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISY|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Glucose
pdb|1ISZ|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1ISZ|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Galactose
pdb|1IT0|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1IT0|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With Lactose
pdb|1V6U|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6U|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 2(2)-Alpha-L-
Arabinofuranosyl-Xylobiose
pdb|1V6V|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6V|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With 3(2)-Alpha-L-
Arabinofuranosyl-Xylotriose
pdb|1V6W|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6W|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
2(2)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylobiose
pdb|1V6X|A Chain A, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
pdb|1V6X|B Chain B, Crystal Structure Of Xylanase From Streptomyces
Olivaceoviridis E-86 Complexed With
3(3)-4-O-Methyl-Alpha- D-Glucuronosyl-Xylotriose
Length = 436
Score = 36.6 bits (83), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 679 HIRLSGTDLCL-TSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAG--- 734
I+ G+ CL T G+ + L C + Q+W+ TD EL + CLDA
Sbjct: 314 QIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATN-QQWTYTDAGELRVYGDKCLDAAGTG 372
Query: 735 -ATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGS--KNRLENTVIVMEMCAQHK 791
TK ++ C G +Q+W L I +G CL + T+I + C+
Sbjct: 373 NGTKVQIYSCWG-GDNQKWR--LNSDGSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGS 429
Query: 792 DTSW 795
+ W
Sbjct: 430 NQRW 433
>pdb|2D1Z|A Chain A, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D1Z|B Chain B, Crystal Structure Of Catalytic-Site Mutant Xylanase From
Streptomyces Olivaceoviridis E-86
pdb|2D20|A Chain A, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D20|B Chain B, Crystal Structure Of Michaelis Complex Of Catalytic-Site
Mutant Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D22|A Chain A, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D22|B Chain B, Crystal Structure Of Covalent Glycosyl-Enzyme Intermediate
Of Catalytic-Site Mutant Xylanase From Streptomyces
Olivaceoviridis E-86
pdb|2D23|A Chain A, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D23|B Chain B, Crystal Structure Of Ep Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|A Chain A, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
pdb|2D24|B Chain B, Crystal Structure Of Es Complex Of Catalytic-Site Mutant
Xylanase From Streptomyces Olivaceoviridis E-86
Length = 436
Score = 36.6 bits (83), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 11/124 (8%)
Query: 679 HIRLSGTDLCL-TSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAG--- 734
I+ G+ CL T G+ + L C + Q+W+ TD EL + CLDA
Sbjct: 314 QIKGVGSGRCLDVPNASTTDGTQVQLYDCHSATN-QQWTYTDAGELRVYGDKCLDAAGTG 372
Query: 735 -ATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGS--KNRLENTVIVMEMCAQHK 791
TK ++ C G +Q+W L I +G CL + T+I + C+
Sbjct: 373 NGTKVQIYSCWG-GDNQKWR--LNSDGSIVGVQSGLCLDAVGGGTANGTLIQLYSCSNGS 429
Query: 792 DTSW 795
+ W
Sbjct: 430 NQRW 433
>pdb|1KNM|A Chain A, Streptomyces Lividans Xylan Binding Domain Cbm13 In
Complex With Lactose
Length = 130
Score = 34.3 bits (77), Expect = 0.29, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 679 HIRLSGTDLCL-TSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGAT- 736
I+ G+ CL + G+ L L C Q+W+ TD EL + CLDA T
Sbjct: 8 QIKGVGSGRCLDVPDASTSDGTQLQLWDCHS-GTNQQWAATDAGELRVYGDKCLDAAGTS 66
Query: 737 ---KPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGS--KNRLENTVIVMEMCAQHK 791
K ++ C G +Q+W L + +G CL + T+I + C+
Sbjct: 67 NGSKVQIYSCWG-GDNQKWR--LNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGS 123
Query: 792 DTSW 795
+ W
Sbjct: 124 NQRW 127
>pdb|1KNL|A Chain A, Streptomyces Lividans Xylan Binding Domain Cbm13
pdb|1MC9|A Chain A, Strepromyces Lividans Xylan Binding Domain Cbm13 In
Complex With Xylopentaose
Length = 130
Score = 34.3 bits (77), Expect = 0.30, Method: Composition-based stats.
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 11/124 (8%)
Query: 679 HIRLSGTDLCL-TSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGAT- 736
I+ G+ CL + G+ L L C Q+W+ TD EL + CLDA T
Sbjct: 8 QIKGVGSGRCLDVPDASTSDGTQLQLWDCHS-GTNQQWAATDAGELRVYGDKCLDAAGTS 66
Query: 737 ---KPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGS--KNRLENTVIVMEMCAQHK 791
K ++ C G +Q+W L + +G CL + T+I + C+
Sbjct: 67 NGSKVQIYSCWG-GDNQKWR--LNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSNGS 123
Query: 792 DTSW 795
+ W
Sbjct: 124 NQRW 127
>pdb|1ABR|B Chain B, Crystal Structure Of Abrin-A
Length = 267
Score = 32.3 bits (72), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 86/217 (39%), Gaps = 41/217 (18%)
Query: 568 GSPLVLKKC-DELSKTQHWS-KTDKSELVLAELLCLDAGATKPK----LTKCHEMGGSQE 621
G+ +++ KC D L + Q W+ K+DK+ + + CL P + C
Sbjct: 36 GNRIIMWKCKDRLEENQLWTLKSDKT--IRSNGKCLTTYGYAPGSYVMIYDCTSAVAEAT 93
Query: 622 YW-CWLRCKSFKWYLDN---VYPEMILPSDDEDRLKKKWAQVEQPKF---QPWYSRARNY 674
YW W DN + P+ L E V+ ++ Q W R N
Sbjct: 94 YWEIW----------DNGTIINPKSALVLSAESSSMGGTLTVQTNEYLMRQGW--RTGNN 141
Query: 675 TSHFHIRLSG-TDLCLTSKVDKTKGSPLVLKKCDELSKTQRWS-KTDKS-ELVLAELLCL 731
TS F +SG +DLC+ + +GS + + CD K Q+W+ TD S V CL
Sbjct: 142 TSPFVTSISGYSDLCM-----QAQGSNVWMADCDSNKKEQQWALYTDGSIRSVQNTNNCL 196
Query: 732 DAGATKPK----LTKCHEMGGSQEWNFVLRDKTPIYS 764
+ K L C SQ W V ++ IYS
Sbjct: 197 TSKDHKQGSTILLMGCSNGWASQRW--VFKNDGSIYS 231
Score = 32.0 bits (71), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 544 YTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWS-KTDKSELVLAELLCLD 602
YT + +T+ CLTSK D +GS ++L C +Q W K D S L + + +D
Sbjct: 181 YTDGSIRSVQNTNNCLTSK-DHKQGSTILLMGCSNGWASQRWVFKNDGSIYSLYDDMVMD 239
Query: 603 AGATKPKL 610
+ P L
Sbjct: 240 VKGSDPSL 247
>pdb|3A21|A Chain A, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A21|B Chain B, Crystal Structure Of Streptomyces Avermitilis Beta-L-
Arabinopyranosidase
pdb|3A22|A Chain A, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A22|B Chain B, Crystal Structure Of Beta-L-Arabinopyranosidase Complexed
With L- Arabinose
pdb|3A23|A Chain A, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
pdb|3A23|B Chain B, Crystal Structure Of Beta-l-arabinopyranosidase Complexed
With D- Galactose
Length = 614
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 45/111 (40%), Gaps = 12/111 (10%)
Query: 696 TKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDA------GATKPKLTKCHEMGGS 749
T G+ L C+ Q W+ T + ELVL CLDA TK + C+ +
Sbjct: 508 TNGTQAELWDCNG-GPNQSWTYTSRKELVLYGNKCLDAYNLGTTNGTKVVIWDCNGQ-AN 565
Query: 750 QEWNFVLRDKTPIYSPATGTCLGSKN--RLENTVIVMEMCAQHKDTSWDLV 798
Q+WN + I + G CL + N T +V+ C + W +
Sbjct: 566 QKWN--INSDGTITNVNAGLCLDAYNAATANGTSLVLWSCGTGDNQKWTVT 614
>pdb|3ZVR|A Chain A, Crystal Structure Of Dynamin
Length = 772
Score = 30.8 bits (68), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 14/64 (21%)
Query: 617 GGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTS 676
GGS+EYW L ++ WY DDE++ KK V+ K + + + S
Sbjct: 556 GGSKEYWFVLTAENLSWY-----------KDDEEKEKKYMLSVDNLKLRDV---EKGFMS 601
Query: 677 HFHI 680
HI
Sbjct: 602 SKHI 605
>pdb|1HWM|B Chain B, Ebulin,Orthorhombic Crystal Form Model
pdb|1HWN|B Chain B, Ebulin Complexed With Galactose, Trigonal Crystal Form
pdb|1HWO|B Chain B, Ebulin Complexed With Lactose, Trigonal Crystal Form
pdb|1HWP|B Chain B, Ebulin Complexed With Pteroic Acid, Trigonal Crystal Form
Length = 266
Score = 30.4 bits (67), Expect = 4.5, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Query: 729 LCLDAGATKPK--LTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEM 786
+CL A + C Q+W + D+T + + G C+ S + +IV+
Sbjct: 150 MCLQANGENNNVWMEDCDVTSVQQQWA-LFDDRTIRVNNSRGLCVTSNGYVSKDLIVIRK 208
Query: 787 CAQHKDTSWDLVPVGSLVEGEKTQVAHMEES 817
C W GS+V + T+V ++ES
Sbjct: 209 CQGLATQRWFFNSDGSVVNLKSTRVMDVKES 239
>pdb|3SNH|A Chain A, Crystal Structure Of Nucleotide-Free Human Dynamin1
Length = 743
Score = 29.6 bits (65), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 617 GGSQEYWCWLRCKSFKWYLDN 637
GGS+EYW L ++ WY D+
Sbjct: 533 GGSKEYWFVLTAENLSWYKDD 553
>pdb|3IF6|B Chain B, Crystal Structure Of Oxa-46 Beta-Lactamase From P.
Aeruginosa
Length = 266
Score = 29.6 bits (65), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 355 GHNEDPLTRNSLRVAHVWMDEYIEHFL---KQRPEARNIDYGDV 395
GHN+D R+++R + VW+ E + K R + IDYG+V
Sbjct: 106 GHNQDQDLRSAMRNSTVWVYELFAKDIGEDKARRYLKQIDYGNV 149
>pdb|3IF6|C Chain C, Crystal Structure Of Oxa-46 Beta-Lactamase From P.
Aeruginosa
Length = 266
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 355 GHNEDPLTRNSLRVAHVWMDEYIEHFL---KQRPEARNIDYGDV 395
GHN+D R+++R + VW+ E + K R + IDYG+V
Sbjct: 106 GHNQDQDLRSAMRNSTVWVYELFAKDIGEDKARRYLKQIDYGNV 149
>pdb|3IF6|A Chain A, Crystal Structure Of Oxa-46 Beta-Lactamase From P.
Aeruginosa
Length = 266
Score = 29.6 bits (65), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Query: 355 GHNEDPLTRNSLRVAHVWMDEYIEHFL---KQRPEARNIDYGDV 395
GHN+D R+++R + VW+ E + K R + IDYG+V
Sbjct: 106 GHNQDQDLRSAMRNSTVWVYELFAKDIGEDKARRYLKQIDYGNV 149
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,614,623
Number of Sequences: 62578
Number of extensions: 1225052
Number of successful extensions: 2359
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 47
length of query: 867
length of database: 14,973,337
effective HSP length: 107
effective length of query: 760
effective length of database: 8,277,491
effective search space: 6290893160
effective search space used: 6290893160
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (26.2 bits)