Query psy1765
Match_columns 867
No_of_seqs 746 out of 4090
Neff 7.6
Searched_HMMs 46136
Date Fri Aug 16 19:29:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3736|consensus 100.0 7E-100 2E-104 860.6 24.8 480 3-720 92-575 (578)
2 KOG3738|consensus 100.0 4.4E-97 1E-101 773.5 15.0 472 9-757 81-556 (559)
3 KOG3737|consensus 100.0 1.5E-90 3.3E-95 721.9 16.5 489 1-719 104-599 (603)
4 cd02510 pp-GalNAc-T pp-GalNAc- 100.0 1.6E-50 3.5E-55 443.1 28.9 297 55-418 1-299 (299)
5 cd02520 Glucosylceramide_synth 99.9 2.8E-27 6.1E-32 243.0 17.7 175 52-346 1-178 (196)
6 COG1216 Predicted glycosyltran 99.9 1.4E-26 3.1E-31 254.4 20.3 220 51-350 2-225 (305)
7 cd04184 GT2_RfbC_Mx_like Myxoc 99.9 1.6E-26 3.5E-31 237.4 18.2 197 52-342 1-198 (202)
8 cd06437 CESA_CaSu_A2 Cellulose 99.9 1.8E-26 3.8E-31 243.2 17.3 210 52-346 1-214 (232)
9 KOG3736|consensus 99.9 3.1E-26 6.7E-31 261.0 15.3 367 104-622 193-570 (578)
10 cd06435 CESA_NdvC_like NdvC_li 99.9 6.3E-26 1.4E-30 239.3 15.2 204 55-344 1-208 (236)
11 cd06420 GT2_Chondriotin_Pol_N 99.9 4E-25 8.7E-30 223.1 18.9 181 56-346 1-182 (182)
12 cd04195 GT2_AmsE_like GT2_AmsE 99.9 1.4E-25 3.1E-30 230.3 15.5 198 55-344 1-200 (201)
13 cd06421 CESA_CelA_like CESA_Ce 99.9 1.8E-25 4E-30 234.8 16.2 205 52-345 1-211 (234)
14 PRK11204 N-glycosyltransferase 99.9 3.4E-25 7.5E-30 254.4 19.8 233 49-377 51-284 (420)
15 TIGR03469 HonB hopene-associat 99.9 1.9E-25 4E-30 253.2 17.1 213 49-343 37-260 (384)
16 cd06427 CESA_like_2 CESA_like_ 99.9 2.1E-25 4.6E-30 236.6 14.8 207 52-342 1-209 (241)
17 PF13641 Glyco_tranf_2_3: Glyc 99.9 4.8E-25 1E-29 231.1 17.1 208 52-346 1-211 (228)
18 PRK14583 hmsR N-glycosyltransf 99.9 9E-25 2E-29 252.2 20.6 233 50-378 73-306 (444)
19 cd06913 beta3GnTL1_like Beta 1 99.9 9.4E-25 2E-29 228.0 17.7 204 56-346 1-210 (219)
20 TIGR01556 rhamnosyltran L-rham 99.9 1.7E-24 3.8E-29 235.1 19.5 198 59-347 1-203 (281)
21 TIGR03111 glyc2_xrt_Gpos1 puta 99.9 8.5E-25 1.8E-29 251.9 17.7 242 49-376 46-290 (439)
22 cd04185 GT_2_like_b Subfamily 99.9 1.7E-24 3.8E-29 222.7 17.9 174 56-349 1-177 (202)
23 cd02526 GT2_RfbF_like RfbF is 99.9 2.8E-24 6.1E-29 226.6 19.0 198 56-346 1-205 (237)
24 cd02525 Succinoglycan_BP_ExoA 99.9 6.2E-24 1.3E-28 225.0 21.0 207 53-346 1-209 (249)
25 PRK10018 putative glycosyl tra 99.9 1.4E-23 3E-28 226.6 21.9 203 50-345 3-207 (279)
26 KOG3738|consensus 99.9 1E-24 2.2E-29 230.0 11.1 350 114-622 179-551 (559)
27 cd04192 GT_2_like_e Subfamily 99.9 8.6E-24 1.9E-28 221.0 17.3 205 56-344 1-210 (229)
28 TIGR03472 HpnI hopanoid biosyn 99.9 3.6E-24 7.9E-29 241.8 15.2 211 49-343 38-251 (373)
29 PF10111 Glyco_tranf_2_2: Glyc 99.9 1.3E-23 2.8E-28 228.1 17.3 210 55-346 1-223 (281)
30 cd06433 GT_2_WfgS_like WfgS an 99.9 3.5E-23 7.6E-28 211.2 17.9 194 55-346 1-195 (202)
31 cd04186 GT_2_like_c Subfamily 99.9 5E-23 1.1E-27 203.4 18.2 164 56-345 1-165 (166)
32 cd06442 DPM1_like DPM1_like re 99.9 1.8E-23 3.9E-28 218.3 13.9 202 56-346 1-204 (224)
33 PRK10073 putative glycosyl tra 99.9 1.1E-22 2.4E-27 225.3 20.7 208 50-343 4-214 (328)
34 PLN02726 dolichyl-phosphate be 99.9 6.8E-23 1.5E-27 217.8 16.6 212 49-346 6-219 (243)
35 cd06439 CESA_like_1 CESA_like_ 99.9 9.4E-23 2E-27 217.1 16.2 205 49-346 26-230 (251)
36 PRK11498 bcsA cellulose syntha 99.9 2.4E-22 5.2E-27 241.8 20.3 205 49-344 257-468 (852)
37 cd02522 GT_2_like_a GT_2_like_ 99.9 2.8E-22 6E-27 208.9 17.7 185 54-344 1-185 (221)
38 cd04196 GT_2_like_d Subfamily 99.9 5.2E-22 1.1E-26 205.2 16.7 201 55-344 1-202 (214)
39 cd06434 GT2_HAS Hyaluronan syn 99.9 3E-22 6.5E-27 210.8 13.3 205 53-345 1-213 (235)
40 PRK10063 putative glycosyl tra 99.9 5E-21 1.1E-25 204.0 22.1 192 52-344 1-195 (248)
41 TIGR03030 CelA cellulose synth 99.9 9.7E-22 2.1E-26 238.2 18.0 228 48-345 127-358 (713)
42 PF00535 Glycos_transf_2: Glyc 99.8 2.8E-20 6E-25 183.2 14.3 169 55-307 1-169 (169)
43 COG1215 Glycosyltransferases, 99.8 5.3E-20 1.2E-24 212.4 18.5 235 51-376 53-288 (439)
44 cd04188 DPG_synthase DPG_synth 99.8 3.4E-20 7.4E-25 192.4 14.1 197 56-338 1-201 (211)
45 cd04179 DPM_DPG-synthase_like 99.8 2.3E-20 5E-25 188.7 10.8 181 56-327 1-185 (185)
46 cd04190 Chitin_synth_C C-termi 99.8 5E-20 1.1E-24 196.0 12.6 140 193-346 63-223 (244)
47 cd06423 CESA_like CESA_like is 99.8 8.4E-20 1.8E-24 180.4 12.3 178 56-320 1-180 (180)
48 cd04187 DPM1_like_bac Bacteria 99.8 5.6E-19 1.2E-23 178.6 12.2 176 56-325 1-179 (181)
49 cd06438 EpsO_like EpsO protein 99.8 1.2E-18 2.6E-23 176.8 9.6 177 56-323 1-183 (183)
50 cd04191 Glucan_BSP_ModH Glucan 99.8 9.9E-18 2.1E-22 178.8 16.6 211 54-341 1-227 (254)
51 KOG3737|consensus 99.7 6.5E-18 1.4E-22 178.3 12.8 183 359-623 406-596 (603)
52 PTZ00260 dolichyl-phosphate be 99.7 2.3E-17 5E-22 183.1 17.9 207 48-339 66-286 (333)
53 PRK14716 bacteriophage N4 adso 99.7 6.8E-17 1.5E-21 186.5 14.7 206 49-343 63-287 (504)
54 PRK13915 putative glucosyl-3-p 99.7 5.4E-17 1.2E-21 177.8 12.2 204 50-338 29-238 (306)
55 cd06436 GlcNAc-1-P_transferase 99.7 5.1E-17 1.1E-21 166.3 11.1 169 56-311 1-183 (191)
56 PRK10714 undecaprenyl phosphat 99.7 9.4E-16 2E-20 169.8 19.7 190 51-338 5-197 (325)
57 KOG2978|consensus 99.6 2.1E-15 4.5E-20 145.6 13.6 209 51-346 2-214 (238)
58 cd00161 RICIN Ricin-type beta- 99.6 3.4E-15 7.4E-20 140.1 13.6 115 680-797 3-124 (124)
59 PF00652 Ricin_B_lectin: Ricin 99.6 5.2E-15 1.1E-19 139.6 10.4 115 678-795 3-124 (124)
60 smart00458 RICIN Ricin-type be 99.6 1.1E-14 2.3E-19 136.2 12.1 111 683-798 4-117 (117)
61 cd00761 Glyco_tranf_GTA_type G 99.6 3E-14 6.5E-19 137.1 15.6 153 56-334 1-154 (156)
62 PRK11234 nfrB bacteriophage N4 99.6 1.4E-14 3.1E-19 173.8 14.5 204 48-340 59-281 (727)
63 COG0463 WcaA Glycosyltransfera 99.6 2.2E-14 4.8E-19 144.5 12.1 107 51-229 2-108 (291)
64 cd02511 Beta4Glucosyltransfera 99.5 4.3E-14 9.4E-19 148.9 13.8 101 53-233 1-101 (229)
65 PRK05454 glucosyltransferase M 99.5 1.4E-13 3E-18 164.5 19.5 215 49-340 121-351 (691)
66 cd00161 RICIN Ricin-type beta- 99.5 7.4E-14 1.6E-18 130.9 11.9 117 549-717 2-124 (124)
67 PF00652 Ricin_B_lectin: Ricin 99.5 3.7E-14 8E-19 133.8 8.8 115 548-715 3-124 (124)
68 smart00458 RICIN Ricin-type be 99.4 6.8E-13 1.5E-17 123.9 11.3 110 554-718 5-117 (117)
69 PF13712 Glyco_tranf_2_5: Glyc 99.4 1.4E-12 3.1E-17 135.7 13.2 150 188-346 39-198 (217)
70 PRK15489 nfrB bacteriophage N4 99.4 6.5E-13 1.4E-17 157.6 11.0 195 49-336 68-285 (703)
71 cd00899 b4GalT Beta-4-Galactos 99.2 3.4E-10 7.3E-15 116.1 15.3 119 188-349 47-171 (219)
72 PF14200 RicinB_lectin_2: Rici 99.2 9E-11 2E-15 108.1 8.2 87 711-798 1-105 (105)
73 PF13632 Glyco_trans_2_3: Glyc 99.0 5.9E-10 1.3E-14 113.9 9.7 124 206-345 1-124 (193)
74 cd02514 GT13_GLCNAC-TI GT13_GL 99.0 4E-09 8.8E-14 115.6 14.5 183 54-346 2-210 (334)
75 KOG2977|consensus 99.0 3.5E-09 7.6E-14 109.6 11.4 169 149-338 105-282 (323)
76 PF13506 Glyco_transf_21: Glyc 98.9 1.2E-09 2.6E-14 110.1 7.0 142 182-342 6-151 (175)
77 PF01585 G-patch: G-patch doma 98.9 5.2E-10 1.1E-14 85.7 3.1 38 820-860 1-38 (45)
78 PF02709 Glyco_transf_7C: N-te 98.9 7.4E-10 1.6E-14 95.7 3.8 60 288-347 16-76 (78)
79 COG4092 Predicted glycosyltran 98.9 9.1E-09 2E-13 105.1 12.0 141 192-346 79-229 (346)
80 PF14200 RicinB_lectin_2: Rici 98.9 3.9E-09 8.5E-14 97.1 7.1 90 664-755 2-105 (105)
81 KOG3588|consensus 98.8 1.8E-07 3.9E-12 99.7 16.1 218 48-351 225-443 (494)
82 cd02510 pp-GalNAc-T pp-GalNAc- 98.6 3.7E-09 8E-14 116.0 -1.0 58 452-509 242-299 (299)
83 smart00443 G_patch glycine ric 98.6 1.8E-08 3.9E-13 78.3 3.1 37 819-858 2-38 (47)
84 PF05679 CHGN: Chondroitin N-a 98.6 3.7E-06 8E-11 98.4 20.9 165 165-350 301-472 (499)
85 KOG0965|consensus 98.5 3.4E-08 7.3E-13 112.6 2.4 41 812-855 897-937 (988)
86 KOG3916|consensus 98.5 1.3E-06 2.8E-11 93.0 12.7 54 290-344 259-312 (372)
87 KOG2547|consensus 98.3 4.4E-06 9.4E-11 89.9 12.0 202 49-336 82-288 (431)
88 PF11397 GlcNAc: Glycosyltrans 98.0 0.00024 5.3E-09 78.8 17.5 166 178-348 88-265 (343)
89 KOG1994|consensus 97.9 4.4E-06 9.6E-11 83.3 1.6 38 817-854 77-114 (268)
90 PLN02893 Cellulose synthase-li 97.9 0.00013 2.9E-09 86.9 14.2 171 49-230 98-326 (734)
91 PF03142 Chitin_synth_2: Chiti 97.9 8.7E-05 1.9E-09 86.1 12.2 133 197-343 195-353 (527)
92 KOG2184|consensus 97.5 4.7E-05 1E-09 89.8 2.6 36 819-857 114-149 (767)
93 KOG2185|consensus 97.5 4.4E-05 9.6E-10 82.5 2.1 36 819-857 295-330 (486)
94 PF03452 Anp1: Anp1; InterPro 97.4 0.0018 3.8E-08 68.9 12.0 152 49-243 22-179 (269)
95 KOG2809|consensus 97.3 0.00012 2.6E-09 78.5 2.8 37 819-858 24-60 (326)
96 KOG3673|consensus 97.2 0.00014 2.9E-09 81.4 2.2 35 820-857 82-116 (845)
97 KOG1996|consensus 97.1 0.00028 6.1E-09 73.4 2.2 31 823-856 214-244 (378)
98 KOG4368|consensus 96.8 0.00058 1.2E-08 77.0 2.5 36 816-855 682-717 (757)
99 PF03071 GNT-I: GNT-I family; 96.8 0.021 4.5E-07 64.8 14.4 202 50-347 91-306 (434)
100 PF13896 Glyco_transf_49: Glyc 96.7 0.011 2.4E-07 65.5 11.6 150 188-346 112-283 (317)
101 PF12656 G-patch_2: DExH-box s 96.6 0.0013 2.8E-08 56.5 2.2 34 818-854 27-60 (77)
102 PF13704 Glyco_tranf_2_4: Glyc 96.5 0.015 3.2E-07 52.4 9.1 32 61-97 1-32 (97)
103 PF03498 CDtoxinA: Cytolethal 96.3 0.0058 1.2E-07 59.6 5.4 74 727-800 61-144 (150)
104 KOG2384|consensus 96.1 0.0033 7.2E-08 62.2 2.6 38 818-858 125-162 (223)
105 COG2943 MdoH Membrane glycosyl 95.7 0.16 3.5E-06 57.8 13.8 141 178-339 212-370 (736)
106 PLN02195 cellulose synthase A 95.0 0.42 9.2E-06 59.0 15.3 177 49-231 249-482 (977)
107 KOG0154|consensus 94.9 0.013 2.9E-07 70.2 2.5 44 816-862 507-550 (573)
108 PLN02189 cellulose synthase 94.9 0.15 3.2E-06 63.2 10.9 181 49-230 328-560 (1040)
109 PLN02638 cellulose synthase A 94.0 0.61 1.3E-05 58.2 13.6 177 49-231 346-579 (1079)
110 KOG2571|consensus 94.0 0.19 4.1E-06 61.3 9.1 139 191-344 426-577 (862)
111 KOG3917|consensus 93.9 0.06 1.3E-06 54.6 4.0 45 290-334 180-224 (310)
112 KOG2138|consensus 92.6 0.059 1.3E-06 62.7 1.8 21 820-840 147-167 (883)
113 PF09488 Osmo_MPGsynth: Mannos 91.7 0.79 1.7E-05 50.4 9.0 130 51-229 49-184 (381)
114 PF11735 CAP59_mtransfer: Cryp 91.4 0.73 1.6E-05 48.8 8.2 174 151-331 37-241 (241)
115 PF11316 Rhamno_transf: Putati 91.4 0.87 1.9E-05 48.1 8.8 62 165-229 74-140 (234)
116 TIGR02460 osmo_MPGsynth mannos 91.2 1.7 3.6E-05 47.6 10.7 131 51-230 49-185 (381)
117 PRK14503 mannosyl-3-phosphogly 91.0 1.8 3.9E-05 47.7 10.7 131 51-230 50-186 (393)
118 PF09258 Glyco_transf_64: Glyc 90.6 1.1 2.5E-05 47.7 9.0 59 178-238 52-110 (247)
119 PLN02190 cellulose synthase-li 90.6 1.4 3E-05 53.3 10.5 165 50-231 91-315 (756)
120 KOG4315|consensus 90.1 0.17 3.7E-06 55.9 2.2 27 817-843 150-176 (455)
121 cd06915 NTP_transferase_WcbM_l 89.7 13 0.00029 38.1 16.0 54 179-233 71-124 (223)
122 PF03214 RGP: Reversibly glyco 89.6 1.1 2.3E-05 48.9 7.7 48 191-238 79-126 (348)
123 PF13733 Glyco_transf_7N: N-te 89.2 1.3 2.9E-05 42.2 7.1 31 189-219 93-127 (136)
124 TIGR00466 kdsB 3-deoxy-D-manno 88.3 14 0.00031 39.0 15.2 126 203-338 87-222 (238)
125 PLN02436 cellulose synthase A 88.2 1.9 4E-05 54.0 9.3 169 49-230 362-594 (1094)
126 PRK10018 putative glycosyl tra 88.1 1.2 2.7E-05 48.4 7.2 32 113-144 59-90 (279)
127 PLN03180 reversibly glycosylat 87.6 1.5 3.3E-05 47.9 7.2 31 191-221 81-111 (346)
128 PF12804 NTP_transf_3: MobA-li 86.8 4.1 8.9E-05 39.8 9.5 81 149-240 40-123 (160)
129 PF03498 CDtoxinA: Cytolethal 86.6 1.4 3.1E-05 43.1 5.8 77 597-719 61-143 (150)
130 COG1209 RfbA dTDP-glucose pyro 86.5 30 0.00066 37.1 15.8 141 178-338 73-214 (286)
131 PF01762 Galactosyl_T: Galacto 86.4 5.4 0.00012 40.7 10.4 121 193-335 69-192 (195)
132 PLN02917 CMP-KDO synthetase 84.1 24 0.00051 38.7 14.6 160 167-338 99-266 (293)
133 COG1208 GCD1 Nucleoside-diphos 83.3 53 0.0012 37.1 17.4 149 166-334 59-209 (358)
134 PLN02400 cellulose synthase 83.1 5.2 0.00011 50.4 9.7 176 49-230 353-585 (1085)
135 PRK14502 bifunctional mannosyl 82.1 7.8 0.00017 46.9 10.4 131 51-230 54-190 (694)
136 cd02540 GT2_GlmU_N_bac N-termi 81.3 14 0.00031 38.2 11.3 58 179-236 63-123 (229)
137 cd04182 GT_2_like_f GT_2_like_ 81.3 9.2 0.0002 38.0 9.5 60 179-238 63-126 (186)
138 cd04195 GT2_AmsE_like GT2_AmsE 81.0 4 8.8E-05 41.1 6.8 36 116-159 57-92 (201)
139 cd02517 CMP-KDO-Synthetase CMP 80.9 33 0.00072 35.9 13.9 61 167-231 53-118 (239)
140 PRK05450 3-deoxy-manno-octulos 80.7 43 0.00093 35.2 14.8 130 203-337 90-221 (245)
141 PLN02915 cellulose synthase A 80.5 6.3 0.00014 49.5 9.1 168 49-229 284-515 (1044)
142 PF04666 Glyco_transf_54: N-Ac 79.8 7.1 0.00015 42.8 8.4 48 183-232 151-198 (297)
143 PLN02458 transferase, transfer 79.6 11 0.00023 41.3 9.5 42 51-95 111-155 (346)
144 PRK15480 glucose-1-phosphate t 78.8 64 0.0014 35.3 15.6 55 178-233 76-131 (292)
145 TIGR03310 matur_ygfJ molybdenu 77.0 11 0.00025 37.6 8.6 60 179-238 63-125 (188)
146 TIGR03202 pucB xanthine dehydr 76.8 27 0.00058 35.3 11.3 60 179-238 67-131 (190)
147 TIGR01556 rhamnosyltran L-rham 76.6 4.7 0.0001 43.5 6.0 50 115-172 46-98 (281)
148 PRK13368 3-deoxy-manno-octulos 74.9 61 0.0013 33.9 13.8 76 148-233 43-119 (238)
149 KOG2977|consensus 74.6 1.3 2.7E-05 47.3 0.8 43 54-97 10-54 (323)
150 PF00535 Glycos_transf_2: Glyc 74.5 6.7 0.00014 37.5 5.9 52 115-174 54-105 (169)
151 cd04181 NTP_transferase NTP_tr 73.6 39 0.00084 34.5 11.8 54 179-233 71-124 (217)
152 cd00218 GlcAT-I Beta1,3-glucur 73.4 25 0.00053 36.8 9.8 41 52-96 1-43 (223)
153 COG1213 Predicted sugar nucleo 73.0 4.9 0.00011 42.0 4.6 73 149-228 47-121 (239)
154 PF06306 CgtA: Beta-1,4-N-acet 72.6 14 0.0003 40.4 7.9 39 54-98 89-127 (347)
155 PF05060 MGAT2: N-acetylglucos 71.5 1.2E+02 0.0026 34.1 15.2 61 52-120 31-91 (356)
156 cd06428 M1P_guanylylT_A_like_N 71.5 60 0.0013 34.5 12.9 55 179-234 75-132 (257)
157 TIGR03584 PseF pseudaminic aci 71.1 97 0.0021 32.4 14.0 53 188-240 75-132 (222)
158 PF00483 NTP_transferase: Nucl 70.0 24 0.00052 37.0 9.4 68 165-233 58-131 (248)
159 cd04189 G1P_TT_long G1P_TT_lon 69.4 69 0.0015 33.3 12.7 67 166-233 58-126 (236)
160 PRK00317 mobA molybdopterin-gu 68.9 20 0.00042 36.4 8.1 57 179-235 62-121 (193)
161 PLN02899 alpha-galactosidase 68.6 5.2 0.00011 47.4 4.1 65 727-794 486-562 (633)
162 PLN02248 cellulose synthase-li 68.5 7.5 0.00016 49.1 5.6 53 178-230 585-647 (1135)
163 TIGR02665 molyb_mobA molybdopt 68.4 20 0.00044 35.8 8.1 57 179-235 61-120 (186)
164 cd04184 GT2_RfbC_Mx_like Myxoc 68.1 7.9 0.00017 38.9 5.0 37 116-160 60-96 (202)
165 PLN03153 hypothetical protein; 67.8 15 0.00032 43.0 7.3 49 290-339 261-314 (537)
166 cd02508 ADP_Glucose_PP ADP-glu 67.3 85 0.0018 31.9 12.5 47 186-233 90-139 (200)
167 KOG1994|consensus 66.8 2.9 6.2E-05 42.8 1.3 33 821-856 38-70 (268)
168 cd02518 GT2_SpsF SpsF is a gly 66.0 52 0.0011 34.4 10.9 57 179-236 64-121 (233)
169 KOG1413|consensus 65.9 46 0.001 36.9 10.2 180 49-308 64-247 (411)
170 cd02538 G1P_TT_short G1P_TT_sh 64.3 1.5E+02 0.0032 31.0 14.0 78 149-231 47-126 (240)
171 COG2068 Uncharacterized MobA-r 63.5 27 0.00059 35.8 7.6 87 145-240 43-133 (199)
172 PRK14352 glmU bifunctional N-a 63.0 1.7E+02 0.0038 34.3 15.6 56 179-234 71-130 (482)
173 TIGR01207 rmlA glucose-1-phosp 62.9 1.7E+02 0.0038 31.8 14.4 53 179-232 73-126 (286)
174 TIGR01105 galF UTP-glucose-1-p 62.5 2.4E+02 0.0051 31.0 15.5 53 179-232 98-158 (297)
175 PRK10073 putative glycosyl tra 61.4 11 0.00024 42.0 4.9 29 115-144 62-90 (328)
176 cd06425 M1P_guanylylT_B_like_N 61.3 37 0.0008 35.4 8.7 67 167-234 59-130 (233)
177 cd06913 beta3GnTL1_like Beta 1 59.8 17 0.00038 37.2 5.8 29 123-159 68-96 (219)
178 PF01644 Chitin_synth_1: Chiti 59.4 85 0.0018 31.3 10.0 51 178-228 107-163 (163)
179 cd02503 MobA MobA catalyzes th 58.1 21 0.00047 35.5 5.9 59 179-238 58-118 (181)
180 PRK14360 glmU bifunctional N-a 57.7 90 0.0019 36.2 11.9 66 167-234 57-125 (450)
181 cd02526 GT2_RfbF_like RfbF is 57.2 17 0.00036 37.6 5.2 26 115-140 48-73 (237)
182 PF02434 Fringe: Fringe-like; 56.8 28 0.00061 37.3 6.8 109 203-338 86-203 (252)
183 cd06422 NTP_transferase_like_1 56.1 1.2E+02 0.0026 31.2 11.4 50 179-229 71-121 (221)
184 PRK14358 glmU bifunctional N-a 55.3 1.7E+02 0.0038 34.4 13.8 76 149-234 51-130 (481)
185 PRK14355 glmU bifunctional N-a 54.8 92 0.002 36.3 11.3 55 179-233 69-126 (459)
186 cd06442 DPM1_like DPM1_like re 54.5 17 0.00036 37.3 4.6 28 116-143 55-82 (224)
187 TIGR03552 F420_cofC 2-phospho- 53.9 34 0.00073 34.7 6.6 59 179-239 65-126 (195)
188 KOG1476|consensus 52.2 1.1E+02 0.0024 33.6 10.1 40 51-94 86-127 (330)
189 cd04186 GT_2_like_c Subfamily 51.0 25 0.00054 33.6 5.0 36 116-159 51-86 (166)
190 PRK11204 N-glycosyltransferase 49.6 29 0.00062 39.9 6.0 58 116-183 111-168 (420)
191 cd02509 GDP-M1P_Guanylyltransf 48.2 1.5E+02 0.0033 31.9 11.0 40 178-217 73-116 (274)
192 TIGR01173 glmU UDP-N-acetylglu 47.3 86 0.0019 36.3 9.5 53 179-231 65-119 (451)
193 TIGR01208 rmlA_long glucose-1- 45.3 4E+02 0.0086 29.7 14.2 67 166-233 58-126 (353)
194 TIGR00334 5S_RNA_mat_M5 ribonu 45.3 45 0.00097 33.5 5.6 55 148-214 2-58 (174)
195 cd06431 GT8_LARGE_C LARGE cata 45.1 1.1E+02 0.0024 33.3 9.2 42 53-97 2-43 (280)
196 cd06423 CESA_like CESA_like is 44.9 37 0.0008 32.2 5.1 36 117-160 56-91 (180)
197 PF03552 Cellulose_synt: Cellu 44.6 43 0.00093 40.9 6.3 55 178-232 166-230 (720)
198 PRK14359 glmU bifunctional N-a 44.2 5.4E+02 0.012 29.4 15.5 46 178-225 67-115 (430)
199 cd02523 PC_cytidylyltransferas 43.8 65 0.0014 33.4 7.1 68 149-225 45-114 (229)
200 PLN02726 dolichyl-phosphate be 43.1 44 0.00095 35.1 5.7 29 116-144 70-98 (243)
201 cd04188 DPG_synthase DPG_synth 43.0 30 0.00064 35.3 4.3 28 116-143 59-86 (211)
202 COG0463 WcaA Glycosyltransfera 41.0 26 0.00057 34.0 3.4 55 149-215 33-87 (291)
203 cd04187 DPM1_like_bac Bacteria 40.9 38 0.00083 33.4 4.6 28 116-143 57-84 (181)
204 cd04179 DPM_DPG-synthase_like 40.6 39 0.00085 33.2 4.6 35 117-159 57-91 (185)
205 PRK14357 glmU bifunctional N-a 39.4 2.2E+02 0.0047 33.0 11.2 57 179-235 63-121 (448)
206 PRK02726 molybdopterin-guanine 38.8 62 0.0013 33.1 5.8 52 179-230 67-120 (200)
207 cd06426 NTP_transferase_like_2 38.5 4.4E+02 0.0095 26.7 15.6 145 166-338 56-202 (220)
208 PTZ00260 dolichyl-phosphate be 38.2 63 0.0014 36.0 6.2 29 115-143 138-166 (333)
209 cd04196 GT_2_like_d Subfamily 38.2 74 0.0016 31.9 6.3 29 116-144 56-84 (214)
210 cd02513 CMP-NeuAc_Synthase CMP 38.2 2.4E+02 0.0052 28.8 10.3 51 190-240 79-135 (223)
211 PF07598 DUF1561: Protein of u 37.4 60 0.0013 38.1 5.7 77 680-757 42-129 (632)
212 PLN03193 beta-1,3-galactosyltr 37.2 3.8E+02 0.0083 30.7 12.0 157 164-344 194-355 (408)
213 cd06433 GT_2_WfgS_like WfgS an 37.0 55 0.0012 32.3 5.1 25 119-143 55-79 (202)
214 PRK10063 putative glycosyl tra 35.3 28 0.00061 37.0 2.7 28 116-144 60-87 (248)
215 TIGR03111 glyc2_xrt_Gpos1 puta 35.2 77 0.0017 36.8 6.5 35 117-159 109-143 (439)
216 PF01501 Glyco_transf_8: Glyco 35.1 1.3E+02 0.0027 31.2 7.7 35 191-226 85-120 (250)
217 PRK14489 putative bifunctional 34.9 1.2E+02 0.0026 34.3 7.9 50 189-238 78-128 (366)
218 PRK14583 hmsR N-glycosyltransf 34.5 67 0.0015 37.3 5.9 36 116-159 132-167 (444)
219 cd06435 CESA_NdvC_like NdvC_li 34.2 1.2E+02 0.0027 31.1 7.4 35 119-160 61-97 (236)
220 cd06439 CESA_like_1 CESA_like_ 33.7 68 0.0015 33.5 5.3 36 117-160 87-122 (251)
221 PRK14353 glmU bifunctional N-a 33.6 1.3E+02 0.0028 34.8 8.1 64 166-230 60-126 (446)
222 cd06427 CESA_like_2 CESA_like_ 33.4 71 0.0015 33.3 5.4 22 123-144 68-89 (241)
223 COG0746 MobA Molybdopterin-gua 33.2 84 0.0018 32.2 5.6 57 179-235 61-119 (192)
224 TIGR00453 ispD 2-C-methyl-D-er 32.9 1.8E+02 0.0039 29.8 8.3 52 179-232 67-120 (217)
225 PRK14356 glmU bifunctional N-a 32.3 1.7E+02 0.0037 33.9 8.9 51 179-229 70-124 (456)
226 cd02516 CDP-ME_synthetase CDP- 32.2 1.7E+02 0.0037 29.9 7.9 52 179-232 70-125 (218)
227 KOG3765|consensus 32.0 1.7E+02 0.0038 33.3 8.4 152 189-346 177-349 (386)
228 cd04183 GT2_BcE_like GT2_BcbE_ 30.7 4.4E+02 0.0095 27.1 10.8 43 186-229 79-122 (231)
229 PRK09382 ispDF bifunctional 2- 30.7 3E+02 0.0066 31.3 10.1 49 190-240 82-131 (378)
230 PRK13385 2-C-methyl-D-erythrit 30.5 2.1E+02 0.0047 29.7 8.4 52 179-232 74-127 (230)
231 cd02541 UGPase_prokaryotic Pro 30.3 2.1E+02 0.0045 30.4 8.5 55 179-233 94-150 (267)
232 PF03360 Glyco_transf_43: Glyc 30.2 80 0.0017 32.8 4.9 69 150-223 12-97 (207)
233 cd00505 Glyco_transf_8 Members 29.8 2.8E+02 0.006 29.2 9.2 39 56-96 3-42 (246)
234 PF11051 Mannosyl_trans3: Mann 29.7 1.4E+02 0.0031 32.2 7.0 35 55-90 3-37 (271)
235 PRK13915 putative glucosyl-3-p 29.6 87 0.0019 34.5 5.5 13 147-159 61-73 (306)
236 COG1210 GalU UDP-glucose pyrop 29.6 1.9E+02 0.0042 31.3 7.6 59 178-236 97-157 (291)
237 cd04198 eIF-2B_gamma_N The N-t 29.2 2.7E+02 0.0059 28.5 8.9 81 149-236 47-132 (214)
238 COG2266 GTP:adenosylcobinamide 28.8 2.2E+02 0.0048 28.7 7.4 73 146-229 39-112 (177)
239 TIGR01099 galU UTP-glucose-1-p 28.4 2.9E+02 0.0063 29.1 9.2 56 179-234 94-151 (260)
240 PF10111 Glyco_tranf_2_2: Glyc 28.3 1.2E+02 0.0027 32.7 6.3 62 51-144 32-93 (281)
241 PF07507 WavE: WavE lipopolysa 28.3 3E+02 0.0064 30.5 9.2 36 193-228 85-120 (311)
242 PF05212 DUF707: Protein of un 28.2 8.2E+02 0.018 26.8 12.2 137 201-346 114-252 (294)
243 TIGR00454 conserved hypothetic 28.1 2.5E+02 0.0055 28.3 8.1 75 149-233 43-119 (183)
244 PF03002 Somatostatin: Somatos 27.2 23 0.0005 21.5 0.2 11 493-503 2-12 (18)
245 PF01697 Glyco_transf_92: Glyc 26.6 1.4E+02 0.003 32.0 6.4 78 151-233 35-137 (285)
246 cd06434 GT2_HAS Hyaluronan syn 26.3 1.1E+02 0.0024 31.3 5.4 31 122-160 60-90 (235)
247 PLN02899 alpha-galactosidase 25.2 66 0.0014 38.6 3.6 61 684-745 485-557 (633)
248 PF05045 RgpF: Rhamnan synthes 24.5 6E+02 0.013 30.2 11.4 35 51-90 264-298 (498)
249 PLN03133 beta-1,3-galactosyltr 23.6 3.4E+02 0.0073 33.2 9.1 120 196-337 468-592 (636)
250 cd06430 GT8_like_2 GT8_like_2 23.6 6.5E+02 0.014 27.8 10.6 36 54-93 3-38 (304)
251 PF09886 DUF2113: Uncharacteri 23.3 1.7E+02 0.0037 29.8 5.6 61 152-230 124-184 (188)
252 PRK00155 ispD 2-C-methyl-D-ery 23.0 4E+02 0.0087 27.4 8.8 43 190-232 81-125 (227)
253 PF09244 DUF1964: Domain of un 22.5 31 0.00067 28.1 0.2 23 829-857 27-49 (68)
254 cd04192 GT_2_like_e Subfamily 22.5 1.3E+02 0.0029 30.4 5.0 29 123-159 66-94 (229)
255 cd02524 G1P_cytidylyltransfera 22.5 1.7E+02 0.0038 30.8 6.0 54 179-233 92-146 (253)
256 PRK00576 molybdopterin-guanine 22.4 2.9E+02 0.0063 27.3 7.3 54 179-232 46-104 (178)
257 cd02511 Beta4Glucosyltransfera 21.0 1.1E+02 0.0023 31.8 3.9 22 123-144 55-76 (229)
258 COG1216 Predicted glycosyltran 20.9 1.5E+02 0.0033 32.4 5.3 56 115-175 57-112 (305)
259 cd06421 CESA_CelA_like CESA_Ce 20.8 1.7E+02 0.0038 29.7 5.5 18 127-144 72-89 (234)
260 cd06436 GlcNAc-1-P_transferase 20.7 2.6E+02 0.0057 27.8 6.7 37 123-159 62-101 (191)
261 COG1207 GlmU N-acetylglucosami 20.7 6.1E+02 0.013 29.3 9.8 69 165-235 56-128 (460)
262 COG1212 KdsB CMP-2-keto-3-deox 20.7 1E+03 0.022 25.2 11.2 172 146-336 41-218 (247)
263 PRK09451 glmU bifunctional N-a 20.3 3E+02 0.0065 32.0 7.9 61 167-230 61-123 (456)
No 1
>KOG3736|consensus
Probab=100.00 E-value=7.1e-100 Score=860.65 Aligned_cols=480 Identities=49% Similarity=0.866 Sum_probs=433.1
Q ss_pred CCHhhhhhhhcCccccCcceeeecccCCCCCCCCCCcccccc-ccCCCCCCcEEEEEEeCCCChHHHHHHHHHHHhcCcc
Q psy1765 3 LNEQDLITRDEGYRYYGFNALISNKLSLDRKIPDTRNSLCAN-QTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQ 81 (867)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~c~~-~~~~~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~ 81 (867)
.+++++++.+.++++++||+++||+|+++|++||+|++.|+. ..|.+.+|.+||||++|||++++|.++|+||+++|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~N~~~Sd~I~l~Rsl~D~r~~~C~~~~~~~~~Lp~~Svii~f~nE~~s~llRtv~Svi~rtp~ 171 (578)
T KOG3736|consen 92 LPEAEEDLEDEGYEKNAFNALLSDRISLNRSLPDLRHPECKKLKYYSDKLPTTSVIIIFHNEAWSTLLRTVHSVINRTPP 171 (578)
T ss_pred CCcchHHHHHHHhhcccchhhhhhcccccCCCcchhchhhhhccccccccCCCceEEEEecCCCcchhheEEeehccCCh
Confidence 457888899999999999999999999999999999999987 5556779999999999999999999999999999999
Q ss_pred ccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCC
Q psy1765 82 SLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYP 161 (867)
Q Consensus 82 ~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~ 161 (867)
.++.|||||||+|+.+
T Consensus 172 ~lLkEIiLVdD~S~~~---------------------------------------------------------------- 187 (578)
T KOG3736|consen 172 YLLKEIILVDDFSDRD---------------------------------------------------------------- 187 (578)
T ss_pred hHeEEEEEeecCcchh----------------------------------------------------------------
Confidence 9999999999999988
Q ss_pred cCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEe
Q psy1765 162 SNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID 241 (867)
Q Consensus 162 ~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~ 241 (867)
++...+++|++.+ ..|++++++++.|+++||++|++.|+||+++|||+||+++.+||++||+.+.+++..+|+|+|+
T Consensus 188 -~l~~~Ld~y~k~~--~~v~i~r~~~R~GLIrARl~GA~~A~geVL~FLDsHcE~n~gWLePLL~~I~~~r~tvv~PvID 264 (578)
T KOG3736|consen 188 -HLKDKLEEYVKRF--SKVRILRTKKREGLIRARLLGASMATGEVLTFLDSHCEVNVGWLEPLLARIAEDRKTVVCPVID 264 (578)
T ss_pred -hhhhhhHHHHhhh--cceeEEeecchhhhHHHHhhhhhhhhchheeeeecceeEecCcchHHHHHhhhcCceeecceEE
Confidence 4455688898887 4599999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCceecc-ccccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccc
Q psy1765 242 IINADTFQYTS-SALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGEN 320 (867)
Q Consensus 242 ~i~~~~~~~~~-~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED 320 (867)
.|+.++|+|.. ....+|+|+|.+.|+|..+|..+..++..++.|+++|+|+||+|+|+|++|.++|+||++|.+||||+
T Consensus 265 ~Id~~tf~y~~~~~~~rGgFdW~l~f~w~~lP~~~~~~~~~~t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdiwGGEN 344 (578)
T KOG3736|consen 265 VIDDNTFEYEKQSELMRGGFDWELTFKWERLPLPEEKRRELPTDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDIWGGEN 344 (578)
T ss_pred eecCcCceecccCccceeeeecceeEEeccCCccHhhcccCCCCCcCCcccCCceEEeeHHHHhhccCccccccccChhh
Confidence 99999999998 68999999999999999999998888888899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCeEEEEcccEEEEEeccCCCCCCCCCCchhhhhhHHHHHhcHHHHHHHHhhcCCCcCCCCCCCchhHHH
Q psy1765 321 LELSFRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQ 400 (867)
Q Consensus 321 ~Dls~Rl~~~G~~i~~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~~R~a~~w~d~~~~~~y~~~p~~~~~~~gdi~~r~~ 400 (867)
+|||||+|+||++++++|||+|+|+||++.||.+|...
T Consensus 345 lElSfrvWqCGG~lei~PCSrVGHifRk~~pY~~p~~~------------------------------------------ 382 (578)
T KOG3736|consen 345 LELSFRVWQCGGRLEIVPCSRVGHIFRKRKPYTFPDGT------------------------------------------ 382 (578)
T ss_pred ceeeEEEeccCCeEEecCccceeeeeecCCCccCCCcc------------------------------------------
Confidence 99999999999999999999999999999999874321
Q ss_pred HHHHcCCcccccccccccCCCcCCCchHHHHhhhhccccCCCCCCCccccccccCceeEEEeecchhhhhhhccCcccCC
Q psy1765 401 LRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARN 480 (867)
Q Consensus 401 lr~~l~ck~F~Wyl~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~N~~R~aeVWmDeyk~~~y~~~p~~~~ 480 (867)
. ...||++|||||||||||++||.++|.+++
T Consensus 383 ---------------------------~----------------------~~~~N~~RlAeVWmDeyK~~~y~~~P~~~~ 413 (578)
T KOG3736|consen 383 ---------------------------D----------------------TATRNLKRLAEVWMDEYKEQFYKRMPGLRN 413 (578)
T ss_pred ---------------------------h----------------------hhhhchhhhhhhhhHHHHHHHHhhCccccc
Confidence 0 013589999999999999999999999999
Q ss_pred CCccCCchhHhhhhhccccccccccccccCccccCCCcHHHHhhhhhcccCCCcccccccccccccceeeeecCCCceec
Q psy1765 481 IDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLT 560 (867)
Q Consensus 481 ~~~gdis~r~~LR~~l~CksF~Wyl~nv~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~rn~~~~g~ir~~~~~~CLD 560 (867)
+++||||+|++||+||+||||+|||+|||||+++|...+ ++.|.|++..++.|+|
T Consensus 414 ~d~GDvseR~~LR~~L~CKsFkWyL~nVyPel~~~~~~~-------------------------~~~G~i~~~~~~~cld 468 (578)
T KOG3736|consen 414 IDEGDLTERKALRERLNCKSFKWYLENVYPELYLPTPHV-------------------------YASGEIRNGNPNLCLD 468 (578)
T ss_pred cCCCCchhHHHHHHhcCCccccchHhhcCccccCCCCcc-------------------------cccceeccCCcchhhh
Confidence 999999999999999999999999999999999997652 3456777878999999
Q ss_pred ccCCC-CCCCcEEEEecCCCCCCceeeecCCCceEEeeceeeec-CCCccEEEeCCCCCCCcceeeeeeeccceeeeccc
Q psy1765 561 SKVDK-TKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLDA-GATKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNV 638 (867)
Q Consensus 561 ~~~~~-~~g~~v~l~~C~~~~~~Q~w~~t~~~~i~~~~~~CLd~-~g~~v~l~~C~~~~~~Q~~w~~~~~~~~~~~~~~~ 638 (867)
..... ..|..+++++||+.+++|.|.||+.++|+.+. .|||+ ..+.|+|..||+++ ||.| .|.
T Consensus 469 ~~~~~~~~~~~~~~~~Ch~~~~~Q~~~yT~~~eir~~~-~cl~~~~~~~v~l~~C~~~~-~q~w-~~~------------ 533 (578)
T KOG3736|consen 469 TERAPAGQGMAVGLYPCHGPGGNQYFPYTKQGEIRIGD-LCLDVDDAGKVTLYDCHKMG-NQLW-HYD------------ 533 (578)
T ss_pred hhchhccCCCcceEecCCCccccccccccCCcceEECC-EEeccccCCceEEEeccccc-ccce-EEc------------
Confidence 88632 23789999999999999999999999999866 99998 44449999999977 7765 331
Q ss_pred CcccccCCChhhhhhhhhccccCCCCCcccccccccccceEEEecCCCceEeecCCCCCCCceEEecCCCCCCCccEEEc
Q psy1765 639 YPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKT 718 (867)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~q~W~~~~~~~~~~~~i~~~~sg~CLd~~~~~~~g~~v~l~~C~~~~~~Q~W~~~ 718 (867)
. .++|+|..||+||++... ..+ +.+..|+.++..|+|.|.
T Consensus 534 ------------------------------------~-~~~i~~~~sg~CL~~~~~-~~~--~~l~~c~~~~~~Q~W~~~ 573 (578)
T KOG3736|consen 534 ------------------------------------K-DGTLYHRNSGKCLEAAVD-KNG--LILVACDPSDPTQQWLFE 573 (578)
T ss_pred ------------------------------------C-CCceEcCCCCccccccCC-CCC--ceEeecCCCCCcceEEEE
Confidence 1 278999999999998432 222 899999997889999997
Q ss_pred cC
Q psy1765 719 DK 720 (867)
Q Consensus 719 ~~ 720 (867)
..
T Consensus 574 ~~ 575 (578)
T KOG3736|consen 574 HV 575 (578)
T ss_pred ec
Confidence 54
No 2
>KOG3738|consensus
Probab=100.00 E-value=4.4e-97 Score=773.45 Aligned_cols=472 Identities=44% Similarity=0.807 Sum_probs=413.8
Q ss_pred hhhhcCccccCcceeeecccCCCCCCCCCCccccccccCCCCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEE
Q psy1765 9 ITRDEGYRYYGFNALISNKLSLDRKIPDTRNSLCANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEII 88 (867)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~c~~~~~~~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiI 88 (867)
+..++.|+.+.||+..||.+.-+|.+||+||++|....|..+||..||||.+|||+.+.|+++|.||++++|+++++|||
T Consensus 81 ~~Ged~y~~~~fnq~esd~l~~~r~i~dtRh~qC~~~~y~~dlp~TsviITfHNEARS~LLRTv~SvlnrsP~~li~EiI 160 (559)
T KOG3738|consen 81 HQGEDPYKANSFNQEESDKLNPTRKIPDTRHPQCRDVDYKVDLPPTSVIITFHNEARSTLLRTVVSVLNRSPEHLIHEII 160 (559)
T ss_pred cCCCchhhcCccchhhhhhhCCCCccccccccccccceeecCCCCceEEEEeccHHHHHHHHHHHHHHcCChHHhhheeE
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHH
Q psy1765 89 LVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEV 168 (867)
Q Consensus 89 lVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l 168 (867)
||||+|.|.. .
T Consensus 161 LVDD~S~Dpe---------------------------------------------------------------------d 171 (559)
T KOG3738|consen 161 LVDDFSQDPE---------------------------------------------------------------------D 171 (559)
T ss_pred EecCCCCChH---------------------------------------------------------------------H
Confidence 9999999871 1
Q ss_pred HHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCc
Q psy1765 169 ESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTF 248 (867)
Q Consensus 169 ~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~ 248 (867)
...+.+. ++|+++|+.++.|+++.|+.|+..|+|.++.|||+||+++.+||++||++++++.+.+|+|+|+.|+.++|
T Consensus 172 ~~~L~ri--~kvr~LRN~~ReGLirSRvrGAdvA~a~vltFLDSHcEvN~~WLePLL~Rvaed~trvVsPiiDvIn~dnf 249 (559)
T KOG3738|consen 172 GKLLKRI--PKVRVLRNNEREGLIRSRVRGADVAQATVLTFLDSHCEVNEGWLEPLLERVAEDTTRVVSPIIDVINLDNF 249 (559)
T ss_pred HHHHhhh--heeeeecccchhhhhhhhccccccccceEEEEEecceeecchhhHHHHHHHhhcccceeeccccccccccc
Confidence 1222333 79999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccc-cccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHH
Q psy1765 249 QYTSS-ALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRI 327 (867)
Q Consensus 249 ~~~~~-~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl 327 (867)
.|... ...+|||+|.++|+|..........+.+++.|+++|+++||.|+|+|++|+++|.||..|.+||||++|++||+
T Consensus 250 ~Y~~asadLrGGFDWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWGGEn~Elsfrv 329 (559)
T KOG3738|consen 250 SYVGASADLRGGFDWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWGGENLELSFRV 329 (559)
T ss_pred ccccchhhhcCCcceEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccCCcceEEEEEE
Confidence 99864 57899999999999998887777777889999999999999999999999999999999999999999999999
Q ss_pred HHcCCeEEEEcccEEEEEeccCCCCCCCCCCchhhhhhHHHHHhcHHHHHHHHhhcCCCcCCCCCCCchhHHHHHHHcCC
Q psy1765 328 WMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGC 407 (867)
Q Consensus 328 ~~~G~~i~~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~~R~a~~w~d~~~~~~y~~~p~~~~~~~gdi~~r~~lr~~l~c 407 (867)
|+||+.++++|||||+|+||++|||.+|.+...
T Consensus 330 W~CGGslEIvPCSRVGHVFRkrHpy~FP~gs~~----------------------------------------------- 362 (559)
T KOG3738|consen 330 WQCGGSLEIVPCSRVGHVFRKRHPYTFPGGSGN----------------------------------------------- 362 (559)
T ss_pred EeeCCeeEEEeccchhhhhhccCCCcCCCCCCc-----------------------------------------------
Confidence 999999999999999999999999998654211
Q ss_pred cccccccccccCCCcCCCchHHHHhhhhccccCCCCCCCccccccccCceeEEEeecchhhhhhhccCcccCCCCccCCc
Q psy1765 408 KSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVT 487 (867)
Q Consensus 408 k~F~Wyl~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~N~~R~aeVWmDeyk~~~y~~~p~~~~~~~gdis 487 (867)
.+.||++|+|||||||||++||..+|.++.+.||+|.
T Consensus 363 -------------------------------------------ty~~NTkr~AEvWmDEYK~~yyaarPsAr~vpfg~i~ 399 (559)
T KOG3738|consen 363 -------------------------------------------TYIKNTKRAAEVWMDEYKNYYYAARPSARRVPFGNIY 399 (559)
T ss_pred -------------------------------------------chhhcchHHHHHHHHHHHHHHHhcCchhhcCCCccHH
Confidence 1246999999999999999999999999999999999
Q ss_pred hhHhhhhhccccccccccccccCccccCCCcHHHHhhhhhcccCCCcccccccccccccceeeeecCCCceecccCCCCC
Q psy1765 488 DRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTK 567 (867)
Q Consensus 488 ~r~~LR~~l~CksF~Wyl~nv~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~rn~~~~g~ir~~~~~~CLD~~~~~~~ 567 (867)
+|.+||++|+||||+|||+|||||+.+|.+... +.|.++ ....|||+.+..+.
T Consensus 400 ~rL~~Rk~l~CksFkWYLenVyPeL~ip~~~~~-------------------------~~g~lr--qg~~Cl~s~~~~~~ 452 (559)
T KOG3738|consen 400 DRLELRKKLRCKSFKWYLENVYPELRIPFKELI-------------------------ATGTLR--QGDNCLDSQGQNSQ 452 (559)
T ss_pred HHHHHHhhcCCcchhhhhhhcCcceeccccccc-------------------------cccchh--ccchhhhhhhcccc
Confidence 999999999999999999999999999987641 234444 47789999875444
Q ss_pred CCcEEEEecCCCCCCceeeecCCCceEEeeceeeecCCCccEEEeCCCCCCCcceeeeeeeccceeeecccCcccccCCC
Q psy1765 568 GSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLDAGATKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSD 647 (867)
Q Consensus 568 g~~v~l~~C~~~~~~Q~w~~t~~~~i~~~~~~CLd~~g~~v~l~~C~~~~~~Q~~w~~~~~~~~~~~~~~~~~~~~~~~~ 647 (867)
+ .++|+.||+.++||+|.+....
T Consensus 453 ~-~~gl~~C~~s~~nqqwa~~~t~-------------------------------------------------------- 475 (559)
T KOG3738|consen 453 E-ALGLASCHGSGGNQQWAFLRTS-------------------------------------------------------- 475 (559)
T ss_pred c-CcceeecccCCCCcchhhhhhh--------------------------------------------------------
Confidence 4 5677777777767776652110
Q ss_pred hhhhhhhhhccccCCCCCcccccccccccceEEEecCCCceEeecCCCCCCCceEEecCCCCCCCccEEEccCCcEEecc
Q psy1765 648 DEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAE 727 (867)
Q Consensus 648 ~~~~~~~~~~~~~~~~~q~W~~~~~~~~~~~~i~~~~sg~CLd~~~~~~~g~~v~l~~C~~~~~~Q~W~~~~~~~~~~~s 727 (867)
... +....+||++. +..+|++|.|..|..+.+.|+|.-.........+
T Consensus 476 -----------------------------~~~--~~~~elCL~v~-~~~pg~~v~l~~C~~~e~~q~~v~~~~~l~h~~s 523 (559)
T KOG3738|consen 476 -----------------------------TQL--ITHRELCLAVG-SNTPGSPVALVPCGNNETKQRWVELGGHLLHAGS 523 (559)
T ss_pred -----------------------------hhH--HHHHhhhheee-cCCCCCeEEEEecCCCCCceEEEecCCchhcccc
Confidence 011 13468999984 4568999999999987889999988888888889
Q ss_pred CceeeeC--CC-CcEEEecCCCCCCCeEEEecC
Q psy1765 728 LLCLDAG--AT-KPKLTKCHEMGGSQEWNFVLR 757 (867)
Q Consensus 728 ~~CLD~~--g~-~v~~~~C~~~~~~Q~W~~~~~ 757 (867)
++|||.. |. .+.+.+|..+..+|+|.|...
T Consensus 524 ~KOGd~~~~g~~~l~~~~C~~~~~sQ~w~f~~~ 556 (559)
T KOG3738|consen 524 HLCLDNPLKGRWLLEVSTCESHLVSQSWQFALE 556 (559)
T ss_pred cceeccccCCCcceeecccccccccceeeeehh
Confidence 9999986 33 578999987767899998743
No 3
>KOG3737|consensus
Probab=100.00 E-value=1.5e-90 Score=721.92 Aligned_cols=489 Identities=38% Similarity=0.710 Sum_probs=428.9
Q ss_pred CCCCHhhhhhhhcCccccCcceeeecccCCCCCCCCCCccccccccCCCCCCcEEEEEEeCCCChHHHHHHHHHHHhcCc
Q psy1765 1 MVLNEQDLITRDEGYRYYGFNALISNKLSLDRKIPDTRNSLCANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTG 80 (867)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~r~~~c~~~~~~~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~ 80 (867)
.+++++.+...+.+-+++|||.++||.|+++|.++|+|.++|+.-.||.++|++||||+||||.++.|.++++||+.+++
T Consensus 104 ~~l~pe~k~a~~AsekEfGfN~~~SDmISm~R~v~D~R~EECkhWdYpe~Lpt~SVviVFHNEGws~LmRTVHSVi~RsP 183 (603)
T KOG3737|consen 104 LVLGPEFKQAIQASEKEFGFNMVASDMISMDRNVNDLRQEECKHWDYPENLPTSSVVIVFHNEGWSTLMRTVHSVIKRSP 183 (603)
T ss_pred cccChhHHHHHHHHHHhhCcceeehhhhhcccCccccCHhhccccCCcccCCcceEEEEEecCccHHHHHHHHHHHhcCc
Confidence 36788888888999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCC
Q psy1765 81 QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEY 160 (867)
Q Consensus 81 ~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std 160 (867)
+.++.|||+|||.|+.+
T Consensus 184 ~~~l~eivlvDDfSdKe--------------------------------------------------------------- 200 (603)
T KOG3737|consen 184 RKYLAEIVLVDDFSDKE--------------------------------------------------------------- 200 (603)
T ss_pred HHhhheEEEeccCCccH---------------------------------------------------------------
Confidence 99999999999999988
Q ss_pred CcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEE
Q psy1765 161 PSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII 240 (867)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i 240 (867)
++++.|++|+... ...|+++|++++.|++.||-+|+..|+|++|+||||||+++.+||.+||+.+.++++.+.+|+|
T Consensus 201 --hLkekLDeYv~~f-nGlVkV~Rne~REGLI~aRSiGA~~atGeV~ifLDAHCEVntNWlpPLlAPI~rdRtvmTVP~I 277 (603)
T KOG3737|consen 201 --HLKEKLDEYVKLF-NGLVKVFRNERREGLIQARSIGAQKATGEVLIFLDAHCEVNTNWLPPLLAPISRDRTVMTVPLI 277 (603)
T ss_pred --HHHHHHHHHHHHh-cCEEEEEecchhhhhhhhhccchhhccccEEEEEecceeeecccccccccccccCceEEEEeee
Confidence 6788899999887 4589999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCceeccc-----cccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCC
Q psy1765 241 DIINADTFQYTSS-----ALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEI 315 (867)
Q Consensus 241 ~~i~~~~~~~~~~-----~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~ 315 (867)
+.||.++++|... .-.+|.|.|.+.++...+++.+...+.....|+++|+++||+|+|.|++|.++|.||+++.+
T Consensus 278 DgId~n~~EyrpvyG~dn~h~rGifeWgmLyKe~~~t~rE~r~RkhnsePyRSPthAGGLfAInRe~F~ELG~YDpgLqi 357 (603)
T KOG3737|consen 278 DGIDGNTYEYRPVYGGDNDHARGIFEWGMLYKEVPLTPREKRLRKHNSEPYRSPTHAGGLFAINREFFFELGLYDPGLQI 357 (603)
T ss_pred eeecCCceEEeeccCCcchhhcchhhhhheeccCCCCHHHHHhhhccCCCCCCcccccceeeehHHHHHHhccCCCccee
Confidence 9999999999742 25688999999888888888777777777899999999999999999999999999999999
Q ss_pred CcccchHHHHHHHHcCCeEEEEcccEEEEEeccCCCCCCCCCCchhhhhhHHHHHhcHHHHHHHHhhcCCCcCCCCCCCc
Q psy1765 316 WGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDV 395 (867)
Q Consensus 316 ~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~~R~a~~w~d~~~~~~y~~~p~~~~~~~gdi 395 (867)
||||++||+|+||+||++|.++|||+|+|++|..-||.+.. .|
T Consensus 358 WGGEnfElSfKIWQCGG~i~fVPCSrVGHvYR~~mpy~fgk---------------------------~~---------- 400 (603)
T KOG3737|consen 358 WGGENFELSFKIWQCGGKILFVPCSRVGHVYRSLMPYQFGK---------------------------PP---------- 400 (603)
T ss_pred ecCcceeEEEEEEeeCCEEEEEEccccchhhhccccccCCC---------------------------Cc----------
Confidence 99999999999999999999999999999999988886411 00
Q ss_pred hhHHHHHHHcCCcccccccccccCCCcCCCchHHHHhhhhccccCCCCCCCccccccccCceeEEEeecchhhhhhhccC
Q psy1765 396 TDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQR 475 (867)
Q Consensus 396 ~~r~~lr~~l~ck~F~Wyl~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~N~~R~aeVWmDeyk~~~y~~~ 475 (867)
.++ .| +-...|++||.|+||||||+|||.+.
T Consensus 401 -------------------------~k~-----------------------~~-p~i~iNy~RVvetW~Ddyk~Yfytre 431 (603)
T KOG3737|consen 401 -------------------------IKV-----------------------GS-PPILINYVRVVETWWDDYKDYFYTRE 431 (603)
T ss_pred -------------------------ccc-----------------------CC-CceEeehhhHHHHHHHhhhhheeecC
Confidence 000 00 01346999999999999999999999
Q ss_pred cccCCCCccCCchhHhhhhhccccccccccccccCccc--cCCCcHHHHhhhhhcccCCCcccccccccccccceeeeec
Q psy1765 476 PEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMI--LPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLS 553 (867)
Q Consensus 476 p~~~~~~~gdis~r~~LR~~l~CksF~Wyl~nv~p~~~--~p~~~~~~~~~~~~~~~~~~~~~~~g~~rn~~~~g~ir~~ 553 (867)
|+++.+++||||++++||++|+||||||||++|+-++. +|- .|++-.| |++|+.
T Consensus 432 P~a~~l~~GDISeqlalr~~lnCkSFkWfMe~iAYDv~~~yP~--------------lP~N~~W----------GE~R~~ 487 (603)
T KOG3737|consen 432 PEAQALPYGDISEQLALREDLNCKSFKWFMEEIAYDVTSHYPL--------------LPKNVDW----------GEIRGF 487 (603)
T ss_pred hhhccCCcccHHHHHHhHhhcCCchhHHHHHHHHHHHHhcCCC--------------CCCCCcc----------hhccCc
Confidence 99999999999999999999999999999999976644 221 1333334 567778
Q ss_pred CCCceecccCCCCCCCcEEEEecCCCCCCceeeecCCCceEEeeceeeecCCCccEEEeCCCCCCCcceeeeeeecccee
Q psy1765 554 STDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLDAGATKPKLTKCHEMGGSQEYWCWLRCKSFKW 633 (867)
Q Consensus 554 ~~~~CLD~~~~~~~g~~v~l~~C~~~~~~Q~w~~t~~~~i~~~~~~CLd~~g~~v~l~~C~~~~~~Q~~w~~~~~~~~~~ 633 (867)
+++.|||++|. ++|+.+++-+||+.++||.+.++..|++.. ...||++.|.++++-.|.-..-+-. |.|
T Consensus 488 at~~ClDsMG~-~p~g~mglt~CHg~GgNQL~RlN~agQl~q-ge~CltAdg~~i~~~hC~lgtv~g~-WqY-------- 556 (603)
T KOG3737|consen 488 ATAYCLDSMGK-TPGGFMGLTPCHGMGGNQLFRLNEAGQLMQ-GEQCLTADGSKIMITHCNLGTVKGE-WQY-------- 556 (603)
T ss_pred ccchhHHhcCC-CCCCccccccccCCCCceEEEeccccchhc-cceeeecCCceEEEEEeecccccCc-eeh--------
Confidence 99999999974 789999999999999999999999999865 4599999999999999974322111 333
Q ss_pred eecccCcccccCCChhhhhhhhhccccCCCCCcccccccccccceEEEecCCCceEeecCCCCCCCceEEecCCCCCCCc
Q psy1765 634 YLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQ 713 (867)
Q Consensus 634 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~W~~~~~~~~~~~~i~~~~sg~CLd~~~~~~~g~~v~l~~C~~~~~~Q 713 (867)
.. ...+++|..+++||+.+. .+.+|.+..|+.+...|
T Consensus 557 ------------------------------------~~----~tk~~~H~~~~kC~~~se---~~~qv~l~~Cd~~~~~Q 593 (603)
T KOG3737|consen 557 ------------------------------------FK----NTKRFTHIPSGKCLDRSE---VLHQVFLSNCDSSKTTQ 593 (603)
T ss_pred ------------------------------------hh----cchheeeccccccccccc---hhheeeecccCCCchhh
Confidence 22 136788999999999843 35789999999988899
Q ss_pred cEEEcc
Q psy1765 714 RWSKTD 719 (867)
Q Consensus 714 ~W~~~~ 719 (867)
+|.+..
T Consensus 594 kw~~ke 599 (603)
T KOG3737|consen 594 KWEMKE 599 (603)
T ss_pred eeehhh
Confidence 998864
No 4
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=100.00 E-value=1.6e-50 Score=443.15 Aligned_cols=297 Identities=59% Similarity=1.010 Sum_probs=254.6
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhh
Q psy1765 55 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFG 134 (867)
Q Consensus 55 SVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g 134 (867)
|||||+||++...|.+||+||++|+++....|||||||+|+|++
T Consensus 1 SIIIp~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t------------------------------------ 44 (299)
T cd02510 1 SVIIIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPE------------------------------------ 44 (299)
T ss_pred CEEEEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchH------------------------------------
Confidence 79999999883599999999999998765459999999999883
Q ss_pred hhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCc
Q psy1765 135 AKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI 214 (867)
Q Consensus 135 ~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~ 214 (867)
.+.+.++......+.|+++++++|.|+++|+|.|+++|+||||+|||+|+
T Consensus 45 ------------------------------~~~~~~~~~~~~~~~v~vi~~~~n~G~~~a~N~g~~~A~gd~i~fLD~D~ 94 (299)
T cd02510 45 ------------------------------LKLLLEEYYKKYLPKVKVLRLKKREGLIRARIAGARAATGDVLVFLDSHC 94 (299)
T ss_pred ------------------------------HHHHHHHHHhhcCCcEEEEEcCCCCCHHHHHHHHHHHccCCEEEEEeCCc
Confidence 12222222222236899999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccc-cccccccccccccccCCcCcCCCCCCCCCccccccccc
Q psy1765 215 EVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSAL-VRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAG 293 (867)
Q Consensus 215 ~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~-~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G 293 (867)
+++|+||++|++.+.+++..+++|.+..++...+.+..... ..+++.|.+.+.|........ .......+.++++++|
T Consensus 95 ~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g 173 (299)
T cd02510 95 EVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPEEER-RRESPTAPIRSPTMAG 173 (299)
T ss_pred ccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCHHHh-hhcCCCCCccCccccc
Confidence 99999999999999999999999999888887777765443 567788887777654433322 1222335667889999
Q ss_pred ceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEec-cCCCCCCCCCCchhhhhhHHHHHhc
Q psy1765 294 GLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFR-SRRPYNNGHNEDPLTRNSLRVAHVW 372 (867)
Q Consensus 294 ~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r-~~~~y~~~~~~~~~~rN~~R~a~~w 372 (867)
+||+|||++|+++|||||+|..||+||+|||+|++++|+++.++|+++|.|+++ .+.+|..+.....+.+|..|++++|
T Consensus 174 ~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a~v~H~~~~~~~~~~~~~~~~~~~~n~~r~~~~w 253 (299)
T cd02510 174 GLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCSRVGHIFRRKRKPYTFPGGSGTVLRNYKRVAEVW 253 (299)
T ss_pred eeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeeccEEEEeccccCCCCCCCCcccHHHHHHHHHHHHH
Confidence 999999999999999999999998999999999999999999999999999999 7889887766557889999999999
Q ss_pred HHHHHHHHhhcCCCcCCCCCCCchhHHHHHHHcCCccccccccccc
Q psy1765 373 MDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVY 418 (867)
Q Consensus 373 ~d~~~~~~y~~~p~~~~~~~gdi~~r~~lr~~l~ck~F~Wyl~~v~ 418 (867)
+++++.++|+.+|.+..+..||+.+|++++++|+||+|+||+++|+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 299 (299)
T cd02510 254 MDEYKEYFYKARPELRNIDYGDLSERKALRERLKCKSFKWYLENVY 299 (299)
T ss_pred HHHHHHHHHhcCcccccCCCCCHHHHHHHHHHcCCCCchHHHhhcC
Confidence 9999999999999988899999999999999999999999999874
No 5
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=99.95 E-value=2.8e-27 Score=242.96 Aligned_cols=175 Identities=19% Similarity=0.320 Sum_probs=143.0
Q ss_pred CcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHh
Q psy1765 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRAR 131 (867)
Q Consensus 52 P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~ 131 (867)
|+||||||+|||+. .|.++|+||++|+|+++ |||||||+|+|++
T Consensus 1 p~vsviip~~n~~~-~l~~~L~sl~~q~~~~~--eiivVdd~s~d~t--------------------------------- 44 (196)
T cd02520 1 PGVSILKPLCGVDP-NLYENLESFFQQDYPKY--EILFCVQDEDDPA--------------------------------- 44 (196)
T ss_pred CCeEEEEecCCCCc-cHHHHHHHHHhccCCCe--EEEEEeCCCcchH---------------------------------
Confidence 78999999999887 89999999999999997 9999999999873
Q ss_pred hhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCc---hhHHhHhhhhcCCCEEE
Q psy1765 132 MFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGL---IRARMFGAKYATGKVLV 208 (867)
Q Consensus 132 ~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~---a~ArN~G~~~A~Gd~ll 208 (867)
.+.+.++.+.+...+++++..+.+.|. +.++|.|++.|+||||+
T Consensus 45 ---------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~g~~~a~~d~i~ 91 (196)
T cd02520 45 ---------------------------------IPVVRKLIAKYPNVDARLLIGGEKVGINPKVNNLIKGYEEARYDILV 91 (196)
T ss_pred ---------------------------------HHHHHHHHHHCCCCcEEEEecCCcCCCCHhHHHHHHHHHhCCCCEEE
Confidence 344556655552235778887767665 34678999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILS 288 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 288 (867)
|+|+|+.++|+||+.+++.+.....++|++.
T Consensus 92 ~~D~D~~~~~~~l~~l~~~~~~~~~~~v~~~------------------------------------------------- 122 (196)
T cd02520 92 ISDSDISVPPDYLRRMVAPLMDPGVGLVTCL------------------------------------------------- 122 (196)
T ss_pred EECCCceEChhHHHHHHHHhhCCCCCeEEee-------------------------------------------------
Confidence 9999999999999999999865444555432
Q ss_pred cccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 289 PTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 289 ~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
...|+++++||++|+++|||++-... .+||+||++|+..+|+++.++|++.++|..
T Consensus 123 -~~~g~~~~~r~~~~~~~ggf~~~~~~-~~eD~~l~~rl~~~G~~i~~~~~~~~~~~~ 178 (196)
T cd02520 123 -CAFGKSMALRREVLDAIGGFEAFADY-LAEDYFLGKLIWRLGYRVVLSPYVVMQPLG 178 (196)
T ss_pred -cccCceeeeEHHHHHhccChHHHhHH-HHHHHHHHHHHHHcCCeEEEcchheeccCC
Confidence 24467899999999999999863333 379999999999999999999998766643
No 6
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=99.94 E-value=1.4e-26 Score=254.40 Aligned_cols=220 Identities=24% Similarity=0.317 Sum_probs=162.4
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHH
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRA 130 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a 130 (867)
+|++||||++||... .+.+||.|+.+|+++.. +||+|||+|+|++
T Consensus 2 ~~~i~~iiv~yn~~~-~l~~~l~~l~~~~~~~~--~iv~vDn~s~d~~-------------------------------- 46 (305)
T COG1216 2 MPKISIIIVTYNRGE-DLVECLASLAAQTYPDD--VIVVVDNGSTDGS-------------------------------- 46 (305)
T ss_pred CcceEEEEEecCCHH-HHHHHHHHHhcCCCCCc--EEEEccCCCCCCC--------------------------------
Confidence 689999999999655 99999999999999887 7778999999984
Q ss_pred hhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCC---EE
Q psy1765 131 RMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGK---VL 207 (867)
Q Consensus 131 ~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd---~l 207 (867)
.+.+.. . ..+.|+++.+.+|.|+++|.|.|+++|.++ |+
T Consensus 47 ----------------------------------~~~~~~---~-~~~~v~~i~~~~NlG~agg~n~g~~~a~~~~~~~~ 88 (305)
T COG1216 47 ----------------------------------LEALKA---R-FFPNVRLIENGENLGFAGGFNRGIKYALAKGDDYV 88 (305)
T ss_pred ----------------------------------HHHHHh---h-cCCcEEEEEcCCCccchhhhhHHHHHHhcCCCcEE
Confidence 111111 1 027999999999999999999999999765 99
Q ss_pred EEEcCCcccCccchHHHHHHHHhcCCc-eeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcc
Q psy1765 208 VFLDSHIEVNTHWLEPLLVPIAERTNT-VTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPI 286 (867)
Q Consensus 208 lfLDaD~~v~p~wLe~Ll~~l~~~~~~-vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~ 286 (867)
++||+|+.+++++|+.|++.+.+++.. +++|.+...+........ ++....+...+...+.......... .+.
T Consensus 89 l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 162 (305)
T COG1216 89 LLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYIDRR-----GGESDGLTGGWRASPLLEIAPDLSS-YLE 162 (305)
T ss_pred EEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchhee-----ccccccccccceecccccccccccc-hhh
Confidence 999999999999999999999998774 455555443322211111 1111111111111111111100010 011
Q ss_pred cccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEeccCC
Q psy1765 287 LSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRR 350 (867)
Q Consensus 287 ~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r~~~ 350 (867)
-...+.|+||+|+|++|+++|+|||.|++| +||+|+|+|++++|+++.++|.+.|.|....+.
T Consensus 163 ~~~~~~G~~~li~~~~~~~vG~~de~~F~y-~eD~D~~~R~~~~G~~i~~~p~a~i~H~~g~s~ 225 (305)
T COG1216 163 VVASLSGACLLIRREAFEKVGGFDERFFIY-YEDVDLCLRARKAGYKIYYVPDAIIYHKIGSSK 225 (305)
T ss_pred hhhhcceeeeEEcHHHHHHhCCCCccccee-ehHHHHHHHHHHcCCeEEEeeccEEEEeccCCC
Confidence 112588999999999999999999999999 999999999999999999999999999765543
No 7
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.94 E-value=1.6e-26 Score=237.37 Aligned_cols=197 Identities=20% Similarity=0.301 Sum_probs=146.3
Q ss_pred CcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHh
Q psy1765 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRAR 131 (867)
Q Consensus 52 P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~ 131 (867)
|++|||||+||++.+.|.+||+||++|+++.+ |||||||||+|++
T Consensus 1 p~vsiii~~~n~~~~~l~~~l~sl~~q~~~~~--eiivvd~gs~d~~--------------------------------- 45 (202)
T cd04184 1 PLISIVMPVYNTPEKYLREAIESVRAQTYPNW--ELCIADDASTDPE--------------------------------- 45 (202)
T ss_pred CeEEEEEecccCcHHHHHHHHHHHHhCcCCCe--EEEEEeCCCCChH---------------------------------
Confidence 68999999999883599999999999999888 9999999999872
Q ss_pred hhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEc
Q psy1765 132 MFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLD 211 (867)
Q Consensus 132 ~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLD 211 (867)
+...+..+.... +.+++++.+++.|++.|+|.|++.|++|||+|+|
T Consensus 46 --------------------------------~~~~~~~~~~~~--~~~~~~~~~~~~g~~~a~n~g~~~a~~d~i~~ld 91 (202)
T cd04184 46 --------------------------------VKRVLKKYAAQD--PRIKVVFREENGGISAATNSALELATGEFVALLD 91 (202)
T ss_pred --------------------------------HHHHHHHHHhcC--CCEEEEEcccCCCHHHHHHHHHHhhcCCEEEEEC
Confidence 122334444433 6899999999999999999999999999999999
Q ss_pred CCcccCccchHHHHHHHHhcC-CceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccc
Q psy1765 212 SHIEVNTHWLEPLLVPIAERT-NTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPT 290 (867)
Q Consensus 212 aD~~v~p~wLe~Ll~~l~~~~-~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (867)
+|+.++|+||+.+++.+..++ .+++.+.....+....... ......|. . ..+....
T Consensus 92 ~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~----------~~~~~~~~---~----------~~~~~~~ 148 (202)
T cd04184 92 HDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRSE----------PFFKPDWS---P----------DLLLSQN 148 (202)
T ss_pred CCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEec----------cccCCCCC---H----------HHhhhcC
Confidence 999999999999999995444 4555432221111110000 00000000 0 0001113
Q ss_pred cccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEE
Q psy1765 291 MAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRI 342 (867)
Q Consensus 291 ~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V 342 (867)
..+++++++|++|+++||||+.+. ++||+||++|++++|+++.++|...+
T Consensus 149 ~~~~~~~~~r~~~~~iggf~~~~~--~~eD~~l~~rl~~~g~~~~~~~~~~~ 198 (202)
T cd04184 149 YIGHLLVYRRSLVRQVGGFREGFE--GAQDYDLVLRVSEHTDRIAHIPRVLY 198 (202)
T ss_pred CccceEeEEHHHHHHhCCCCcCcc--cchhHHHHHHHHhccceEEEccHhhh
Confidence 345677899999999999999865 48999999999999999999997543
No 8
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=99.94 E-value=1.8e-26 Score=243.20 Aligned_cols=210 Identities=16% Similarity=0.182 Sum_probs=147.1
Q ss_pred CcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHh
Q psy1765 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRAR 131 (867)
Q Consensus 52 P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~ 131 (867)
|+||||||+|||+. .|.+||+||++|+|+....||||||| |+|++
T Consensus 1 p~vSViIp~yNe~~-~l~~~L~sl~~q~~~~~~~eIiVvD~-s~D~t--------------------------------- 45 (232)
T cd06437 1 PMVTVQLPVFNEKY-VVERLIEAACALDYPKDRLEIQVLDD-STDET--------------------------------- 45 (232)
T ss_pred CceEEEEecCCcHH-HHHHHHHHHHhcCCCccceEEEEEEC-CCCcH---------------------------------
Confidence 68999999999876 99999999999999864348999998 88773
Q ss_pred hhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhc--CCCCEEEEEcCCCcCc-hhHHhHhhhhcCCCEEE
Q psy1765 132 MFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGL--NNGRVHLYRTSKREGL-IRARMFGAKYATGKVLV 208 (867)
Q Consensus 132 ~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~--~~~~vrii~~~~n~G~-a~ArN~G~~~A~Gd~ll 208 (867)
.+.+.++.... ..++++++...++.|+ +.|+|.|++.|+||||+
T Consensus 46 ---------------------------------~~~~~~~~~~~~~~~~~i~~~~~~~~~G~k~~a~n~g~~~a~~~~i~ 92 (232)
T cd06437 46 ---------------------------------VRLAREIVEEYAAQGVNIKHVRRADRTGYKAGALAEGMKVAKGEYVA 92 (232)
T ss_pred ---------------------------------HHHHHHHHHHHhhcCCceEEEECCCCCCCchHHHHHHHHhCCCCEEE
Confidence 22233332221 1257888877777885 88999999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCC-CceeccccccccccccccccccccCCcCcCCCCCCCCCccc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINAD-TFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPIL 287 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~-~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~ 287 (867)
|+|+|++++|+||+.++..+..+..++|.+.+...+.+ .+... . . .+ ...+.+. . ..... .....
T Consensus 93 ~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~-~--~--~~--~~~~~~~-~--~~~~~----~~~~~ 158 (232)
T cd06437 93 IFDADFVPPPDFLQKTPPYFADPKLGFVQTRWGHINANYSLLTR-V--Q--AM--SLDYHFT-I--EQVAR----SSTGL 158 (232)
T ss_pred EEcCCCCCChHHHHHhhhhhcCCCeEEEecceeeEcCCCchhhH-h--h--hh--hHHhhhh-H--hHhhH----hhcCC
Confidence 99999999999999977776544446666655433322 11000 0 0 00 0000000 0 00000 00011
Q ss_pred ccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 288 SPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 288 ~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
...+.|+++++||++|+++||||+.+. .||+||++|+++.|+++.++|++.|+|..
T Consensus 159 ~~~~~g~~~~~rr~~~~~vgg~~~~~~---~ED~~l~~rl~~~G~~~~~~~~~~v~~~~ 214 (232)
T cd06437 159 FFNFNGTAGVWRKECIEDAGGWNHDTL---TEDLDLSYRAQLKGWKFVYLDDVVVPAEL 214 (232)
T ss_pred eEEeccchhhhhHHHHHHhCCCCCCcc---hhhHHHHHHHHHCCCeEEEeccceeeeeC
Confidence 223457777899999999999998652 79999999999999999999999999865
No 9
>KOG3736|consensus
Probab=99.94 E-value=3.1e-26 Score=261.02 Aligned_cols=367 Identities=30% Similarity=0.440 Sum_probs=214.0
Q ss_pred HHHHHhhcCCCceEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEE
Q psy1765 104 VETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLY 183 (867)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii 183 (867)
|+.|++.+.- ++++++++|+|+++||+.|++.|+||++. +++-..-|..|.-.|. .+.+.+-.....-|-|-+|
T Consensus 193 Ld~y~k~~~~--v~i~r~~~R~GLIrARl~GA~~A~geVL~--FLDsHcE~n~gWLePL--L~~I~~~r~tvv~PvID~I 266 (578)
T KOG3736|consen 193 LEEYVKRFSK--VRILRTKKREGLIRARLLGASMATGEVLT--FLDSHCEVNVGWLEPL--LARIAEDRKTVVCPVIDVI 266 (578)
T ss_pred hHHHHhhhcc--eeEEeecchhhhHHHHhhhhhhhhchhee--eeecceeEecCcchHH--HHHhhhcCceeecceEEee
Confidence 4556664444 89999999999999999999999999986 7777777887776542 2222211111112344455
Q ss_pred EcCCCcCchhHHhHhhhhcCCCEEEEEcCCc-ccCccchHHHHHHHHhcCC--ceeeeEEeeecCCCce----ecccccc
Q psy1765 184 RTSKREGLIRARMFGAKYATGKVLVFLDSHI-EVNTHWLEPLLVPIAERTN--TVTVPIIDIINADTFQ----YTSSALV 256 (867)
Q Consensus 184 ~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~--~vv~p~i~~i~~~~~~----~~~~~~~ 256 (867)
... ++.+... ...+.|-|-.=|+-.. .++..+..+.-.. .+|. -...+.+..|+..-|. |..+...
T Consensus 267 d~~-tf~y~~~----~~~~rGgFdW~l~f~w~~lP~~~~~~~~~~--t~PirsPtMaGglFAI~r~yF~eiG~yD~gMdi 339 (578)
T KOG3736|consen 267 DDN-TFEYEKQ----SELMRGGFDWELTFKWERLPLPEEKRRELP--TDPIRSPTMAGGLFAIDRKYFGELGSYDEGMDI 339 (578)
T ss_pred cCc-Cceeccc----CccceeeeecceeEEeccCCccHhhcccCC--CCCcCCcccCCceEEeeHHHHhhccCccccccc
Confidence 444 4444332 2334444333232221 1233333221100 1111 1112223344444333 3344566
Q ss_pred ccccccccccccccCCcCcCCCCCCCCCcccccccccceEeE-eHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEE
Q psy1765 257 RGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAI-DRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLA 335 (867)
Q Consensus 257 ~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~ai-rR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~ 335 (867)
+||-+..+.|+- +++||-+-+ .=+ +||- .+| .
T Consensus 340 wGGENlElSfrv---------------------WqCGG~lei~PCS---rVGH---------------ifR--------k 372 (578)
T KOG3736|consen 340 WGGENLELSFRV---------------------WQCGGRLEIVPCS---RVGH---------------IFR--------K 372 (578)
T ss_pred cChhhceeeEEE---------------------eccCCeEEecCcc---ceee---------------eee--------c
Confidence 677666666651 233332211 000 0010 000 0
Q ss_pred EEcccEEEEEeccCCCCCCCCCCchhhhhhHHHHHhcHHHHHHHHhhcCCCcCCCCCCCchhHHHHHHHcCCcccccccc
Q psy1765 336 MIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLD 415 (867)
Q Consensus 336 ~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~~R~a~~w~d~~~~~~y~~~p~~~~~~~gdi~~r~~lr~~l~ck~F~Wyl~ 415 (867)
..| |-+....-+. .+|.+|+|++||||||++||++.|.++.+++||+|+|++||++|+||+|+|||+
T Consensus 373 ~~p-----Y~~p~~~~~~--------~~N~~RlAeVWmDeyK~~~y~~~P~~~~~d~GDvseR~~LR~~L~CKsFkWyL~ 439 (578)
T KOG3736|consen 373 RKP-----YTFPDGTDTA--------TRNLKRLAEVWMDEYKEQFYKRMPGLRNIDEGDLTERKALRERLNCKSFKWYLE 439 (578)
T ss_pred CCC-----ccCCCcchhh--------hhchhhhhhhhhHHHHHHHHhhCccccccCCCCchhHHHHHHhcCCccccchHh
Confidence 001 0010000011 379999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcCCCchHHHHhhhhccccCCCCCCCccccccccCceeEEEeecchhhhhhhccCcccCCCCccCCchhHhhhhh
Q psy1765 416 NVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRAR 495 (867)
Q Consensus 416 ~v~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~N~~R~aeVWmDeyk~~~y~~~p~~~~~~~gdis~r~~LR~~ 495 (867)
|||||+.+|...... .|+ +.... .| .++|-.- ++++
T Consensus 440 nVyPel~~~~~~~~~-~G~---i~~~~-----------~~------~cld~~~-----------------------~~~~ 475 (578)
T KOG3736|consen 440 NVYPELYLPTPHVYA-SGE---IRNGN-----------PN------LCLDTER-----------------------APAG 475 (578)
T ss_pred hcCccccCCCCcccc-cce---eccCC-----------cc------hhhhhhc-----------------------hhcc
Confidence 999999998876522 111 11100 00 1111110 0000
Q ss_pred ccccccccccccccCccccCCCcHHHHhhhhhcccCCCcccccccccccccceeeeecCCCceecccCCCCCCCcEEEEe
Q psy1765 496 LGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKK 575 (867)
Q Consensus 496 l~CksF~Wyl~nv~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~rn~~~~g~ir~~~~~~CLD~~~~~~~g~~v~l~~ 575 (867)
-+| .+ ...||+..+ .+|.|. ++..++||... .|+|.. ..|. |.|.+
T Consensus 476 ~~~----------~~-~~~~Ch~~~-~~Q~~~----------------yT~~~eir~~~--~cl~~~---~~~~-v~l~~ 521 (578)
T KOG3736|consen 476 QGM----------AV-GLYPCHGPG-GNQYFP----------------YTKQGEIRIGD--LCLDVD---DAGK-VTLYD 521 (578)
T ss_pred CCC----------cc-eEecCCCcc-cccccc----------------ccCCcceEECC--EEeccc---cCCc-eEEEe
Confidence 011 11 123555431 123333 56778888655 999975 2344 99999
Q ss_pred cCCCCCCceeeecCCCceEE-eeceeeecCCC--ccEEEeCCCCCCCcce
Q psy1765 576 CDELSKTQHWSKTDKSELVL-AELLCLDAGAT--KPKLTKCHEMGGSQEY 622 (867)
Q Consensus 576 C~~~~~~Q~w~~t~~~~i~~-~~~~CLd~~g~--~v~l~~C~~~~~~Q~~ 622 (867)
||+.+ ||.|.|..+|.|.+ .+++||++... .+.+..|......|+|
T Consensus 522 C~~~~-~q~w~~~~~~~i~~~~sg~CL~~~~~~~~~~l~~c~~~~~~Q~W 570 (578)
T KOG3736|consen 522 CHKMG-NQLWHYDKDGTLYHRNSGKCLEAAVDKNGLILVACDPSDPTQQW 570 (578)
T ss_pred ccccc-ccceEEcCCCceEcCCCCccccccCCCCCceEeecCCCCCcceE
Confidence 99877 99999999988875 56899998743 3889999998888885
No 10
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=99.93 E-value=6.3e-26 Score=239.26 Aligned_cols=204 Identities=17% Similarity=0.228 Sum_probs=147.3
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhh
Q psy1765 55 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFG 134 (867)
Q Consensus 55 SVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g 134 (867)
|||||+|||+...|.+||+||++|+|+++ |||||||+|+|++
T Consensus 1 siiip~~ne~~~~l~~~l~sl~~q~~~~~--eiiVvdd~s~D~t------------------------------------ 42 (236)
T cd06435 1 SIHVPCYEEPPEMVKETLDSLAALDYPNF--EVIVIDNNTKDEA------------------------------------ 42 (236)
T ss_pred CeeEeeCCCcHHHHHHHHHHHHhCCCCCc--EEEEEeCCCCchh------------------------------------
Confidence 79999999886699999999999999988 9999999999983
Q ss_pred hhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCc-hhHHhHhhhhcC--CCEEEEEc
Q psy1765 135 AKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGL-IRARMFGAKYAT--GKVLVFLD 211 (867)
Q Consensus 135 ~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~-a~ArN~G~~~A~--Gd~llfLD 211 (867)
+.+.+.++.++. +.++++++..++.|. ++|+|.|++.|. +|||+|+|
T Consensus 43 -----------------------------~~~~i~~~~~~~-~~~i~~i~~~~~~G~~~~a~n~g~~~a~~~~d~i~~lD 92 (236)
T cd06435 43 -----------------------------LWKPVEAHCAQL-GERFRFFHVEPLPGAKAGALNYALERTAPDAEIIAVID 92 (236)
T ss_pred -----------------------------HHHHHHHHHHHh-CCcEEEEEcCCCCCCchHHHHHHHHhcCCCCCEEEEEc
Confidence 123444554443 357888988888886 899999999986 79999999
Q ss_pred CCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceecccccccc-ccccccccccccCCcCcCCCCCCCCCcccccc
Q psy1765 212 SHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRG-GFNWGLHFKWENLPKGTLNSSEDFIKPILSPT 290 (867)
Q Consensus 212 aD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g-~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (867)
+|+.++|+||+.++..+.+...++|++.....+.... ..... .+.+...+.. ..+ . ........
T Consensus 93 ~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-~~~----~-----~~~~~~~~ 157 (236)
T cd06435 93 ADYQVEPDWLKRLVPIFDDPRVGFVQAPQDYRDGEES-----LFKRMCYAEYKGFFDI-GMV----S-----RNERNAII 157 (236)
T ss_pred CCCCcCHHHHHHHHHHhcCCCeeEEecCccccCCCcc-----HHHHHHhHHHHHHHHH-Hhc----c-----ccccCceE
Confidence 9999999999999999975444555443222111100 00000 0000000000 000 0 00112335
Q ss_pred cccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEE
Q psy1765 291 MAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGH 344 (867)
Q Consensus 291 ~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H 344 (867)
..|+++++||++|+++||||+.+. +||+||++|+++.|+++.++|.+.++|
T Consensus 158 ~~g~~~~~rr~~~~~iGgf~~~~~---~eD~dl~~r~~~~G~~~~~~~~~~~~~ 208 (236)
T cd06435 158 QHGTMCLIRRSALDDVGGWDEWCI---TEDSELGLRMHEAGYIGVYVAQSYGHG 208 (236)
T ss_pred EecceEEEEHHHHHHhCCCCCccc---cchHHHHHHHHHCCcEEEEcchhhccC
Confidence 578889999999999999999752 799999999999999999999987654
No 11
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=99.93 E-value=4e-25 Score=223.09 Aligned_cols=181 Identities=18% Similarity=0.247 Sum_probs=138.4
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
||||+||++. .|.+||+||++|+++++ |||||||+|+|.+
T Consensus 1 ivip~~n~~~-~l~~~l~sl~~q~~~~~--eiivvdd~s~d~t------------------------------------- 40 (182)
T cd06420 1 LIITTYNRPE-ALELVLKSVLNQSILPF--EVIIADDGSTEET------------------------------------- 40 (182)
T ss_pred CEEeecCChH-HHHHHHHHHHhccCCCC--EEEEEeCCCchhH-------------------------------------
Confidence 7999999775 99999999999998888 9999999998872
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcc
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIE 215 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~ 215 (867)
.+.+.++.+......+.+++.+.+.|.++++|.|++.|+||||+|||+|++
T Consensus 41 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~g~~~a~g~~i~~lD~D~~ 91 (182)
T cd06420 41 -----------------------------KELIEEFKSQFPIPIKHVWQEDEGFRKAKIRNKAIAAAKGDYLIFIDGDCI 91 (182)
T ss_pred -----------------------------HHHHHHHHhhcCCceEEEEcCCcchhHHHHHHHHHHHhcCCEEEEEcCCcc
Confidence 233444433221123445555556788999999999999999999999999
Q ss_pred cCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccce
Q psy1765 216 VNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGL 295 (867)
Q Consensus 216 v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~ 295 (867)
++++||+.+++.+ .....++++.+. ++... ......|++
T Consensus 92 ~~~~~l~~~~~~~-~~~~~v~g~~~~-~~~~~---------------------------------------~~~~~~~~~ 130 (182)
T cd06420 92 PHPDFIADHIELA-EPGVFLSGSRVL-LNEKL---------------------------------------TERGIRGCN 130 (182)
T ss_pred cCHHHHHHHHHHh-CCCcEEecceee-ccccc---------------------------------------ceeEeccce
Confidence 9999999999988 222233332221 10000 002455778
Q ss_pred EeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeE-EEEcccEEEEEe
Q psy1765 296 FAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSL-AMIPCSRIGHVF 346 (867)
Q Consensus 296 ~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i-~~~P~s~V~H~~ 346 (867)
++++|+.|.++||||+.+..||+||+||++|++++|+.+ .+.|.+.++|++
T Consensus 131 ~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g~~~~~~~~~~~~~h~~ 182 (182)
T cd06420 131 MSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSGIKFRKLKFAAIVFHLW 182 (182)
T ss_pred EEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcCCcEEEecccceeeecC
Confidence 899999999999999999999999999999999999554 455688999974
No 12
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.93 E-value=1.4e-25 Score=230.31 Aligned_cols=198 Identities=18% Similarity=0.137 Sum_probs=147.4
Q ss_pred EEEEEeCCCCh-HHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhh
Q psy1765 55 SVIICFYNEHP-ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMF 133 (867)
Q Consensus 55 SVIIp~yNe~~-~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~ 133 (867)
|||||+||++. ..|.+||+||++|+++.+ |||||||+|+++
T Consensus 1 sviip~~n~~~~~~l~~~l~Sl~~q~~~~~--eiiivdd~ss~d------------------------------------ 42 (201)
T cd04195 1 SVLMSVYIKEKPEFLREALESILKQTLPPD--EVVLVKDGPVTQ------------------------------------ 42 (201)
T ss_pred CEEEEccccchHHHHHHHHHHHHhcCCCCc--EEEEEECCCCch------------------------------------
Confidence 79999999763 599999999999999877 999999999666
Q ss_pred hhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCC
Q psy1765 134 GAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSH 213 (867)
Q Consensus 134 g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD 213 (867)
.+.+.+..+.++. .+++++.++|.|++.|+|.|++.|+||||+|+|+|
T Consensus 43 -----------------------------~t~~~~~~~~~~~---~i~~i~~~~n~G~~~a~N~g~~~a~gd~i~~lD~D 90 (201)
T cd04195 43 -----------------------------SLNEVLEEFKRKL---PLKVVPLEKNRGLGKALNEGLKHCTYDWVARMDTD 90 (201)
T ss_pred -----------------------------hHHHHHHHHHhcC---CeEEEEcCccccHHHHHHHHHHhcCCCEEEEeCCc
Confidence 2344555665544 49999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccc
Q psy1765 214 IEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMA 292 (867)
Q Consensus 214 ~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 292 (867)
++++|++|+.+++.+.+++. .++++....++.+........... ....+. .... ....+.
T Consensus 91 d~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-----~~~~--------~~~~~~ 151 (201)
T cd04195 91 DISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGNDIGKRRLPT------SHDDIL-----KFAR--------RRSPFN 151 (201)
T ss_pred cccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCCeeccccCCC------CHHHHH-----HHhc--------cCCCCC
Confidence 99999999999999987654 566655544433322111000000 000000 0000 011233
Q ss_pred cceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEE
Q psy1765 293 GGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGH 344 (867)
Q Consensus 293 G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H 344 (867)
++++++||++|+++|+||+. .++||.+|++|+..+|+++.++|...+.|
T Consensus 152 ~~~~~~rr~~~~~~g~~~~~---~~~eD~~~~~r~~~~g~~~~~~~~~~~~y 200 (201)
T cd04195 152 HPTVMFRKSKVLAVGGYQDL---PLVEDYALWARMLANGARFANLPEILVKA 200 (201)
T ss_pred ChHHhhhHHHHHHcCCcCCC---CCchHHHHHHHHHHcCCceecccHHHhhc
Confidence 45678999999999999986 24899999999999999999999877654
No 13
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=99.93 E-value=1.8e-25 Score=234.80 Aligned_cols=205 Identities=15% Similarity=0.154 Sum_probs=148.4
Q ss_pred CcEEEEEEeCCCChHHHHHHHHHHHhcCccc--cccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHH
Q psy1765 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQS--LLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIR 129 (867)
Q Consensus 52 P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~--~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 129 (867)
|+||||||+||++...|.+||+||+.|+++. + |||||||+|+|++
T Consensus 1 p~vsviip~~n~~~~~l~~~l~sl~~q~~~~~~~--eiivvdd~s~d~t------------------------------- 47 (234)
T cd06421 1 PTVDVFIPTYNEPLEIVRKTLRAALAIDYPHDKL--RVYVLDDGRRPEL------------------------------- 47 (234)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHhcCCCcccE--EEEEEcCCCchhH-------------------------------
Confidence 7899999999987668999999999999998 6 9999999998872
Q ss_pred HhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCc-hhHHhHhhhhcCCCEEE
Q psy1765 130 ARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGL-IRARMFGAKYATGKVLV 208 (867)
Q Consensus 130 a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~-a~ArN~G~~~A~Gd~ll 208 (867)
.+.+..+.... .++++..+.|.|. ++++|.|++.|+||||+
T Consensus 48 -----------------------------------~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~n~~~~~a~~d~i~ 89 (234)
T cd06421 48 -----------------------------------RALAAELGVEY---GYRYLTRPDNRHAKAGNLNNALAHTTGDFVA 89 (234)
T ss_pred -----------------------------------HHHHHHhhccc---CceEEEeCCCCCCcHHHHHHHHHhCCCCEEE
Confidence 23334433222 5667776666664 67789999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcC-CceeeeEEeeecCCCceecccccccccccc--ccccccccCCcCcCCCCCCCCCc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERT-NTVTVPIIDIINADTFQYTSSALVRGGFNW--GLHFKWENLPKGTLNSSEDFIKP 285 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~-~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~--~l~~~~~~~~~~~~~~~~~~~~p 285 (867)
|+|+|+.++|+||+.+++.+.+++ .++|++.....+.+.... ....+.. ...+... ... ...
T Consensus 90 ~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~--~~~--------~~~ 154 (234)
T cd06421 90 ILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDW-----LADGAPNEQELFYGVI--QPG--------RDR 154 (234)
T ss_pred EEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchh-----HHHHHHHHHHHHHHHH--HHH--------Hhh
Confidence 999999999999999999998744 455555433222221100 0000000 0000000 000 000
Q ss_pred ccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEE
Q psy1765 286 ILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHV 345 (867)
Q Consensus 286 ~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~ 345 (867)
.......|+++++||++|+++||||+.+. +||+++++|++++|+++.++|.+.++|.
T Consensus 155 ~~~~~~~g~~~~~r~~~~~~ig~~~~~~~---~eD~~l~~r~~~~g~~i~~~~~~~~~~~ 211 (234)
T cd06421 155 WGAAFCCGSGAVVRREALDEIGGFPTDSV---TEDLATSLRLHAKGWRSVYVPEPLAAGL 211 (234)
T ss_pred cCCceecCceeeEeHHHHHHhCCCCccce---eccHHHHHHHHHcCceEEEecCcccccc
Confidence 12456678999999999999999997653 7999999999999999999999988874
No 14
>PRK11204 N-glycosyltransferase; Provisional
Probab=99.93 E-value=3.4e-25 Score=254.45 Aligned_cols=233 Identities=17% Similarity=0.191 Sum_probs=167.0
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
...|+||||||+|||+. .|.+||+|+++|+|+++ |||||||+|+|++
T Consensus 51 ~~~p~vsViIp~yne~~-~i~~~l~sl~~q~yp~~--eiiVvdD~s~d~t------------------------------ 97 (420)
T PRK11204 51 KEYPGVSILVPCYNEGE-NVEETISHLLALRYPNY--EVIAINDGSSDNT------------------------------ 97 (420)
T ss_pred CCCCCEEEEEecCCCHH-HHHHHHHHHHhCCCCCe--EEEEEECCCCccH------------------------------
Confidence 35689999999999875 99999999999999987 9999999999883
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEE
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLV 208 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~ll 208 (867)
.+.++++.++. +++++++.++|.|++.|+|.|++.|+|||++
T Consensus 98 ------------------------------------~~~l~~~~~~~--~~v~~i~~~~n~Gka~aln~g~~~a~~d~i~ 139 (420)
T PRK11204 98 ------------------------------------GEILDRLAAQI--PRLRVIHLAENQGKANALNTGAAAARSEYLV 139 (420)
T ss_pred ------------------------------------HHHHHHHHHhC--CcEEEEEcCCCCCHHHHHHHHHHHcCCCEEE
Confidence 23445554444 6899999888999999999999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPIL 287 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~ 287 (867)
++|+|+.++|++|+.+++.+.+++. ++|++.....+..+..- ....+.+....... .. ... ..-.
T Consensus 140 ~lDaD~~~~~d~L~~l~~~~~~~~~v~~v~g~~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~----~~~--~~~~ 205 (420)
T PRK11204 140 CIDGDALLDPDAAAYMVEHFLHNPRVGAVTGNPRIRNRSTLLG---RIQVGEFSSIIGLI-----KR----AQR--VYGR 205 (420)
T ss_pred EECCCCCCChhHHHHHHHHHHhCCCeEEEECCceeccchhHHH---HHHHHHHHHhhhHH-----HH----HHH--HhCC
Confidence 9999999999999999999987765 44443222212111000 00000010000000 00 000 0012
Q ss_pred ccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEeccCCCCCCCCCCchhhhhhHH
Q psy1765 288 SPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLR 367 (867)
Q Consensus 288 ~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~~R 367 (867)
...++|+++++||++++++||||+++. .||+|+++|+.++|+++.++|++.++|.. |.....+.+...|
T Consensus 206 ~~~~~G~~~~~rr~~l~~vgg~~~~~~---~ED~~l~~rl~~~G~~i~~~p~~~~~~~~--------p~t~~~~~~Qr~R 274 (420)
T PRK11204 206 VFTVSGVITAFRKSALHEVGYWSTDMI---TEDIDISWKLQLRGWDIRYEPRALCWILM--------PETLKGLWKQRLR 274 (420)
T ss_pred ceEecceeeeeeHHHHHHhCCCCCCcc---cchHHHHHHHHHcCCeEEeccccEEEeEC--------cccHHHHHHHHHH
Confidence 335678999999999999999999864 79999999999999999999999998854 2233344555555
Q ss_pred HHHhcHHHHH
Q psy1765 368 VAHVWMDEYI 377 (867)
Q Consensus 368 ~a~~w~d~~~ 377 (867)
.+.-.+....
T Consensus 275 W~~G~~~~l~ 284 (420)
T PRK11204 275 WAQGGAEVLL 284 (420)
T ss_pred HhcCHHHHHH
Confidence 5555444443
No 15
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=99.93 E-value=1.9e-25 Score=253.19 Aligned_cols=213 Identities=18% Similarity=0.187 Sum_probs=150.7
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCcc-ccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhh
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQ-SLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGL 127 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~-~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 127 (867)
...|+||||||+|||+. .|.+||+||++|+|+ ++ |||||||+|+|++
T Consensus 37 ~~~p~VSVIIpa~Ne~~-~L~~~L~sL~~q~yp~~~--eIIVVDd~StD~T----------------------------- 84 (384)
T TIGR03469 37 EAWPAVVAVVPARNEAD-VIGECVTSLLEQDYPGKL--HVILVDDHSTDGT----------------------------- 84 (384)
T ss_pred CCCCCEEEEEecCCcHh-HHHHHHHHHHhCCCCCce--EEEEEeCCCCCcH-----------------------------
Confidence 46799999999999875 999999999999998 56 9999999999983
Q ss_pred HHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcC-CCCEEEEEcCC----CcCchhHHhHhhhhc
Q psy1765 128 IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLN-NGRVHLYRTSK----REGLIRARMFGAKYA 202 (867)
Q Consensus 128 ~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~-~~~vrii~~~~----n~G~a~ArN~G~~~A 202 (867)
.+.+.++.++.+ .+++++++.+. ..|.+.|+|.|+++|
T Consensus 85 -------------------------------------~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A 127 (384)
T TIGR03469 85 -------------------------------------ADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAA 127 (384)
T ss_pred -------------------------------------HHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHH
Confidence 334455544441 13788887532 357888999999999
Q ss_pred C-----CCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCC
Q psy1765 203 T-----GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLN 277 (867)
Q Consensus 203 ~-----Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~ 277 (867)
+ ||+|+|+|+|+.++|+||+.+++.+.+++.+++++.........++....+.....+.....+.|..
T Consensus 128 ~~~~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 200 (384)
T TIGR03469 128 RTLAPPADYLLLTDADIAHGPDNLARLVARARAEGLDLVSLMVRLRCESFWEKLLIPAFVFFFQKLYPFRWVN------- 200 (384)
T ss_pred hccCCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCEEEecccccCCCHHHHHHHHHHHHHHHHhcchhhhc-------
Confidence 9 9999999999999999999999999887766665433221111110000000000000000011110
Q ss_pred CCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEE
Q psy1765 278 SSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIG 343 (867)
Q Consensus 278 ~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~ 343 (867)
... ..+....|+|+++||++|+++||||+..... .||++|+.|+.++|+++.+.+.....
T Consensus 201 ---~~~--~~~~~~~G~~~lirr~~~~~vGGf~~~~~~~-~ED~~L~~r~~~~G~~v~~~~~~~~~ 260 (384)
T TIGR03469 201 ---DPR--RRTAAAAGGCILIRREALERIGGIAAIRGAL-IDDCTLAAAVKRSGGRIWLGLAARTR 260 (384)
T ss_pred ---CCC--ccceeecceEEEEEHHHHHHcCCHHHHhhCc-ccHHHHHHHHHHcCCcEEEEecCceE
Confidence 000 1234567999999999999999999865554 79999999999999999987655443
No 16
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=99.93 E-value=2.1e-25 Score=236.61 Aligned_cols=207 Identities=15% Similarity=0.176 Sum_probs=142.1
Q ss_pred CcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHh
Q psy1765 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRAR 131 (867)
Q Consensus 52 P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~ 131 (867)
|+||||||+|||+. .|.++|+||++|+|+....|||||||+|+|++
T Consensus 1 p~vsIiIp~~Ne~~-~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t--------------------------------- 46 (241)
T cd06427 1 PVYTILVPLYKEAE-VLPQLIASLSALDYPRSKLDVKLLLEEDDEET--------------------------------- 46 (241)
T ss_pred CeEEEEEecCCcHH-HHHHHHHHHHhCcCCcccEEEEEEECCCCchH---------------------------------
Confidence 78999999999875 99999999999999863339999999998873
Q ss_pred hhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEc
Q psy1765 132 MFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLD 211 (867)
Q Consensus 132 ~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLD 211 (867)
.+.+.++.... ..+++++.+.++.|.++|+|.|++.|+||||+|+|
T Consensus 47 ---------------------------------~~i~~~~~~~~-~~~i~~~~~~~~~G~~~a~n~g~~~a~gd~i~~~D 92 (241)
T cd06427 47 ---------------------------------IAAARALRLPS-IFRVVVVPPSQPRTKPKACNYALAFARGEYVVIYD 92 (241)
T ss_pred ---------------------------------HHHHHHhccCC-CeeEEEecCCCCCchHHHHHHHHHhcCCCEEEEEc
Confidence 22333332111 13566677777899999999999999999999999
Q ss_pred CCcccCccchHHHHHHHHhc-CC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccc
Q psy1765 212 SHIEVNTHWLEPLLVPIAER-TN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSP 289 (867)
Q Consensus 212 aD~~v~p~wLe~Ll~~l~~~-~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 289 (867)
+|+.++|+||+++++.+.++ +. +++++.+...+........ .....+ ...+... .+.. .. . . ...
T Consensus 93 aD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~~-~~~~--~~---~-~--~~~ 159 (241)
T cd06427 93 AEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTR--MFALEY--AAWFDYL-LPGL--AR---L-G--LPI 159 (241)
T ss_pred CCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHH--HHHHHH--HHHHHHH-HHHH--Hh---c-C--Cee
Confidence 99999999999999999865 33 3344433222211000000 000000 0000000 0000 00 0 0 112
Q ss_pred ccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEE
Q psy1765 290 TMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRI 342 (867)
Q Consensus 290 ~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V 342 (867)
.+.|+++++||++|+++||||+.. + +||+||++|+++.|+++.++|...+
T Consensus 160 ~~~g~~~~~rr~~~~~vgg~~~~~--~-~eD~~l~~rl~~~G~r~~~~~~~~~ 209 (241)
T cd06427 160 PLGGTSNHFRTDVLRELGGWDPFN--V-TEDADLGLRLARAGYRTGVLNSTTL 209 (241)
T ss_pred ecCCchHHhhHHHHHHcCCCCccc--c-hhhHHHHHHHHHCCceEEEeccccc
Confidence 346778899999999999999842 3 7999999999999999999986543
No 17
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=99.93 E-value=4.8e-25 Score=231.13 Aligned_cols=208 Identities=24% Similarity=0.335 Sum_probs=128.7
Q ss_pred CcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHh
Q psy1765 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRAR 131 (867)
Q Consensus 52 P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~ 131 (867)
|.||||||+||+.. .|.++|.|+++|+++.+ |||||||+|++++
T Consensus 1 P~v~Vvip~~~~~~-~l~~~l~sl~~~~~~~~--~v~vvd~~~~~~~--------------------------------- 44 (228)
T PF13641_consen 1 PRVSVVIPAYNEDD-VLRRCLESLLAQDYPRL--EVVVVDDGSDDET--------------------------------- 44 (228)
T ss_dssp --EEEE--BSS-HH-HHHHHHHHHTTSHHHTE--EEEEEEE-SSS-G---------------------------------
T ss_pred CEEEEEEEecCCHH-HHHHHHHHHHcCCCCCe--EEEEEECCCChHH---------------------------------
Confidence 78999999999766 99999999999999887 9999999998872
Q ss_pred hhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcC---chhHHhHhhhhcCCCEEE
Q psy1765 132 MFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREG---LIRARMFGAKYATGKVLV 208 (867)
Q Consensus 132 ~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G---~a~ArN~G~~~A~Gd~ll 208 (867)
.+.+.++.+.+...+++++..+.+.| .+.|+|.|++.+++|+|+
T Consensus 45 ---------------------------------~~~~~~~~~~~~~~~v~vi~~~~~~g~~~k~~a~n~~~~~~~~d~i~ 91 (228)
T PF13641_consen 45 ---------------------------------AEILRALAARYPRVRVRVIRRPRNPGPGGKARALNEALAAARGDYIL 91 (228)
T ss_dssp ---------------------------------CTTHHHHHHTTGG-GEEEEE----HHHHHHHHHHHHHHHH---SEEE
T ss_pred ---------------------------------HHHHHHHHHHcCCCceEEeecCCCCCcchHHHHHHHHHHhcCCCEEE
Confidence 12344555554223679998876665 788999999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILS 288 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 288 (867)
|+|+|+.++|+||+.+++.+.....++|++.+...+.... ... ...+... .+. . ...........
T Consensus 92 ~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~------~~~~~~~-~~~-~------~~~~~~~~~~~ 156 (228)
T PF13641_consen 92 FLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNW-LTR------LQDLFFA-RWH-L------RFRSGRRALGV 156 (228)
T ss_dssp EE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCE-EEE-------TT--S--EET-T------TS-TT-B----
T ss_pred EECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCH-HHH------HHHHHHh-hhh-h------hhhhhhcccce
Confidence 9999999999999999999955555677665533222211 000 0000000 000 0 00001122234
Q ss_pred cccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 289 PTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 289 ~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
..+.|+++++||++|+++||||+ +.. +||.||++|+++.|+++.+.|.+.|.|..
T Consensus 157 ~~~~G~~~~~rr~~~~~~g~fd~--~~~-~eD~~l~~r~~~~G~~~~~~~~~~v~~~~ 211 (228)
T PF13641_consen 157 AFLSGSGMLFRRSALEEVGGFDP--FIL-GEDFDLCLRLRAAGWRIVYAPDALVYHEE 211 (228)
T ss_dssp S-B--TEEEEEHHHHHHH-S--S--SSS-SHHHHHHHHHHHTT--EEEEEEEEEEE--
T ss_pred eeccCcEEEEEHHHHHHhCCCCC--CCc-ccHHHHHHHHHHCCCcEEEECCcEEEEeC
Confidence 56789999999999999999999 333 69999999999999999999999999975
No 18
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=99.93 E-value=9e-25 Score=252.24 Aligned_cols=233 Identities=17% Similarity=0.194 Sum_probs=169.2
Q ss_pred CCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHH
Q psy1765 50 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIR 129 (867)
Q Consensus 50 ~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 129 (867)
..|.||||||+|||+. .+.+||+|+++|+|+++ |||||||+|+|++
T Consensus 73 ~~p~vsViIP~yNE~~-~i~~~l~sll~q~yp~~--eIivVdDgs~D~t------------------------------- 118 (444)
T PRK14583 73 GHPLVSILVPCFNEGL-NARETIHAALAQTYTNI--EVIAINDGSSDDT------------------------------- 118 (444)
T ss_pred CCCcEEEEEEeCCCHH-HHHHHHHHHHcCCCCCe--EEEEEECCCCccH-------------------------------
Confidence 4689999999999876 89999999999999987 9999999998872
Q ss_pred HhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEE
Q psy1765 130 ARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF 209 (867)
Q Consensus 130 a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llf 209 (867)
.+.+.++.++. +++++++.++|.|++.|+|.|++.|+|||+++
T Consensus 119 -----------------------------------~~~~~~~~~~~--~~v~vv~~~~n~Gka~AlN~gl~~a~~d~iv~ 161 (444)
T PRK14583 119 -----------------------------------AQVLDALLAED--PRLRVIHLAHNQGKAIALRMGAAAARSEYLVC 161 (444)
T ss_pred -----------------------------------HHHHHHHHHhC--CCEEEEEeCCCCCHHHHHHHHHHhCCCCEEEE
Confidence 33455555554 68999998889999999999999999999999
Q ss_pred EcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccc
Q psy1765 210 LDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILS 288 (867)
Q Consensus 210 LDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 288 (867)
+|+|+.++|++|+.+++.+.+++. ++|++.....+.+++.. ....+.+.... .... .. ... .-..
T Consensus 162 lDAD~~~~~d~L~~lv~~~~~~~~~g~v~g~~~~~~~~~~~~---~~~~~e~~~~~--~~~~--~~-----~~~--~g~~ 227 (444)
T PRK14583 162 IDGDALLDKNAVPYLVAPLIANPRTGAVTGNPRIRTRSTLIG---RVQVGEFSSII--GLIK--RT-----QRV--YGQV 227 (444)
T ss_pred ECCCCCcCHHHHHHHHHHHHhCCCeEEEEccceecCCCcchh---hHHHHHHHHHH--HHHH--HH-----HHH--hCCc
Confidence 999999999999999999987665 44443222222221110 00001110000 0000 00 000 0013
Q ss_pred cccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEeccCCCCCCCCCCchhhhhhHHH
Q psy1765 289 PTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRV 368 (867)
Q Consensus 289 ~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~~R~ 368 (867)
..++|+++++||++++++||||+++. .||+|+++|+..+|+++.+.|++.+++.. |.....+.+...|.
T Consensus 228 ~~~sG~~~~~rr~al~~vGg~~~~~i---~ED~dl~~rl~~~G~~i~~~p~a~~~~~~--------p~t~~~~~~Qr~RW 296 (444)
T PRK14583 228 FTVSGVVAAFRRRALADVGYWSPDMI---TEDIDISWKLQLKHWSVFFEPRGLCWILM--------PETLRGLWKQRLRW 296 (444)
T ss_pred eEecCceeEEEHHHHHHcCCCCCCcc---cccHHHHHHHHHcCCeEEEeeccEEeeeC--------CCCHHHHHHHHHHH
Confidence 45678999999999999999999864 79999999999999999999999888753 33444556666666
Q ss_pred HHhcHHHHHH
Q psy1765 369 AHVWMDEYIE 378 (867)
Q Consensus 369 a~~w~d~~~~ 378 (867)
+.-++..+..
T Consensus 297 ~~G~~~~~~~ 306 (444)
T PRK14583 297 AQGGAEVFLK 306 (444)
T ss_pred hCcHHHHHHH
Confidence 6555544443
No 19
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=99.92 E-value=9.4e-25 Score=227.98 Aligned_cols=204 Identities=20% Similarity=0.260 Sum_probs=145.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCcc-ccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQ-SLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFG 134 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~-~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g 134 (867)
||||+||++. .|.+||+||++|+++ .+ |||||||+|+|++
T Consensus 1 ViIp~yn~~~-~l~~~l~sl~~q~~~~~~--eiiVvDd~S~d~t------------------------------------ 41 (219)
T cd06913 1 IILPVHNGEQ-WLDECLESVLQQDFEGTL--ELSVFNDASTDKS------------------------------------ 41 (219)
T ss_pred CEEeecCcHH-HHHHHHHHHHhCCCCCCE--EEEEEeCCCCccH------------------------------------
Confidence 7999999765 999999999999987 46 9999999999883
Q ss_pred hhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEE----cCCCcCchhHHhHhhhhcCCCEEEEE
Q psy1765 135 AKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYR----TSKREGLIRARMFGAKYATGKVLVFL 210 (867)
Q Consensus 135 ~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~----~~~n~G~a~ArN~G~~~A~Gd~llfL 210 (867)
.+.+.++.+++...+++++. .+++.|++.|+|.|++.|+||||+||
T Consensus 42 ------------------------------~~i~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~a~N~g~~~a~gd~i~~l 91 (219)
T cd06913 42 ------------------------------AEIIEKWRKKLEDSGVIVLVGSHNSPSPKGVGYAKNQAIAQSSGRYLCFL 91 (219)
T ss_pred ------------------------------HHHHHHHHHhCcccCeEEEEecccCCCCccHHHHHHHHHHhcCCCEEEEE
Confidence 33455555554334677764 34568999999999999999999999
Q ss_pred cCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCce-eccccccccccccccccccccCCcCcCCCCCCCCCccccc
Q psy1765 211 DSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQ-YTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSP 289 (867)
Q Consensus 211 DaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~-~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 289 (867)
|+|+.+.|+||+.++..+.+++..++++.+.....+... +.. +.. .+......... . . ...+
T Consensus 92 D~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---------~~~-----~~~~~~~~~~~-~-~-~~~~ 154 (219)
T cd06913 92 DSDDVMMPQRIRLQYEAALQHPNSIIGCQVRRIPEDSTERYTR---------WIN-----TLTREQLLTQV-Y-T-SHGP 154 (219)
T ss_pred CCCccCChhHHHHHHHHHHhCCCcEEEEEEEecCcccchhhHH---------HHH-----hcCHHHHHHHH-H-h-hcCC
Confidence 999999999999999999877776666654333222110 000 000 00000000000 0 0 0001
Q ss_pred ccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 290 TMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 290 ~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
.+....+++||++|+++||||+.+..+ +||+||++|+.++|+++.++|...+.+..
T Consensus 155 ~~~~~~~~~rr~~~~~~g~f~~~~~~~-~eD~~l~~r~~~~g~~i~~~~~~~~~yr~ 210 (219)
T cd06913 155 TVIMPTWFCSREWFSHVGPFDEGGKGV-PEDLLFFYEHLRKGGGVYRVDRCLLLYRY 210 (219)
T ss_pred ccccccceeehhHHhhcCCccchhccc-hhHHHHHHHHHHcCCceEEEcceeeeeee
Confidence 222233679999999999999987654 79999999999999999999987776544
No 20
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=99.92 E-value=1.7e-24 Score=235.07 Aligned_cols=198 Identities=16% Similarity=0.164 Sum_probs=143.6
Q ss_pred EeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhhhhh
Q psy1765 59 CFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYA 138 (867)
Q Consensus 59 p~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~~~a 138 (867)
++||++.+.|.+||+||++|+ . |||||||+|+++.
T Consensus 1 Vtyn~~~~~l~~~l~sl~~q~---~--~iiVVDN~S~~~~---------------------------------------- 35 (281)
T TIGR01556 1 VTFNPDLEHLGELITSLPKQV---D--RIIAVDNSPHSDQ---------------------------------------- 35 (281)
T ss_pred CccCccHHHHHHHHHHHHhcC---C--EEEEEECcCCCcH----------------------------------------
Confidence 489976679999999999996 3 9999999987651
Q ss_pred ccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc---CCCEEEEEcCCcc
Q psy1765 139 TGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TGKVLVFLDSHIE 215 (867)
Q Consensus 139 ~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A---~Gd~llfLDaD~~ 215 (867)
.+.+.++.. ++|+++++++|.|+++|+|.|++.| .+|||+|||+|+.
T Consensus 36 ----------------------------~~~~~~~~~--~~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i~~lD~D~~ 85 (281)
T TIGR01556 36 ----------------------------PLKNARLRG--QKIALIHLGDNQGIAGAQNQGLDASFRRGVQGVLLLDQDSR 85 (281)
T ss_pred ----------------------------hHHHHhccC--CCeEEEECCCCcchHHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 122222223 6899999999999999999999998 7899999999999
Q ss_pred cCccchHHHHHHHHhcC--CceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccccccc
Q psy1765 216 VNTHWLEPLLVPIAERT--NTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAG 293 (867)
Q Consensus 216 v~p~wLe~Ll~~l~~~~--~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G 293 (867)
+++++|+.+++.+..++ .++++|.+. +...-.........+ + .+.... . .....+..+..+.+
T Consensus 86 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~------~~~~~~---~---~~~~~~~~~~~~~~ 150 (281)
T TIGR01556 86 PGNAFLAAQWKLLSAENGQACALGPRFF--DRGTSRRLPAIHLDG-L------LLRQIS---L---DGLTTPQKTSFLIS 150 (281)
T ss_pred CCHHHHHHHHHHHHhcCCceEEECCeEE--cCCCcccCCceeecc-c------ceeeec---c---cccCCceeccEEEc
Confidence 99999999999998763 456666552 222111100000000 0 000000 0 00111223333344
Q ss_pred ceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEec
Q psy1765 294 GLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFR 347 (867)
Q Consensus 294 ~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r 347 (867)
+.++++|++|+++|+|||.|+++ +||+|+|+|++++|+++.++|.+.+.|...
T Consensus 151 sg~li~~~~~~~iG~fde~~fi~-~~D~e~~~R~~~~G~~i~~~~~~~~~H~~g 203 (281)
T TIGR01556 151 SGCLITREVYQRLGMMDEELFID-HVDTEWSLRAQNYGIPLYIDPDIVLEHRIG 203 (281)
T ss_pred CcceeeHHHHHHhCCccHhhccc-chHHHHHHHHHHCCCEEEEeCCEEEEEecC
Confidence 44679999999999999999997 799999999999999999999999999753
No 21
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=99.92 E-value=8.5e-25 Score=251.86 Aligned_cols=242 Identities=17% Similarity=0.172 Sum_probs=166.7
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
...|+||||||+|||+. .|.+||+|+++|+||....|||||||+|+|++
T Consensus 46 ~~~P~vsVIIP~yNe~~-~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T------------------------------ 94 (439)
T TIGR03111 46 GKLPDITIIIPVYNSED-TLFNCIESIYNQTYPIELIDIILANNQSTDDS------------------------------ 94 (439)
T ss_pred CCCCCEEEEEEeCCChH-HHHHHHHHHHhcCCCCCCeEEEEEECCCChhH------------------------------
Confidence 56799999999999875 99999999999999875448999999999883
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEE
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLV 208 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~ll 208 (867)
.+.+.++.+.. ++++++..+++.|+++|+|.|++.++||||+
T Consensus 95 ------------------------------------~~il~~~~~~~--~~v~v~~~~~~~Gka~AlN~gl~~s~g~~v~ 136 (439)
T TIGR03111 95 ------------------------------------FQVFCRAQNEF--PGLSLRYMNSDQGKAKALNAAIYNSIGKYII 136 (439)
T ss_pred ------------------------------------HHHHHHHHHhC--CCeEEEEeCCCCCHHHHHHHHHHHccCCEEE
Confidence 23344444444 6788877777899999999999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceecccccccccccccc-ccccccCCcCcCCCCCCCCCcc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGL-HFKWENLPKGTLNSSEDFIKPI 286 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l-~~~~~~~~~~~~~~~~~~~~p~ 286 (867)
++|+|+.++|++|+.+++.+.+++. +++++.+.. +.+...... +.+.+.+ ...+.................-
T Consensus 137 ~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~-~~~~~~~~~-----~~~~~~~~~~~~~~y~~~~l~~r~~~s~~~ 210 (439)
T TIGR03111 137 HIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILT-DKELIEKTK-----GRFLKLIRRCEYFEYAQAFLAGRNFESQVN 210 (439)
T ss_pred EECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEec-Cchhhhhhc-----chhhhHhHHhHHHHHHHHHHhhhHHHHhcC
Confidence 9999999999999999999987765 444444421 111111000 0000000 0000000000000000000001
Q ss_pred cccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHH-cCCeEEEEcccEEEEEeccCCCCCCCCCCchhhhhh
Q psy1765 287 LSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWM-CGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNS 365 (867)
Q Consensus 287 ~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~-~G~~i~~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~ 365 (867)
....++|+++++||++++++||||++.. +||+|+++|+++ .|+++.+.|.+.++|.. |.......+.+
T Consensus 211 ~~~~~sGa~~~~Rr~~l~~vggf~~~~i---~ED~~l~~rl~~~~g~kv~~~~~a~~~~~~--------p~t~~~~~~QR 279 (439)
T TIGR03111 211 SLFTLSGAFSAFRRETILKTQLYNSETV---GEDTDMTFQIRELLDGKVYLCENAIFYVDP--------IDGLNKLYTQR 279 (439)
T ss_pred CeEEEccHHHhhhHHHHHHhCCCCCCCc---CccHHHHHHHHHhcCCeEEECCCCEEEEEC--------CcCHHHHHHHH
Confidence 2245678999999999999999998763 799999999974 69999999999998854 22334556666
Q ss_pred HHHHHhcHHHH
Q psy1765 366 LRVAHVWMDEY 376 (867)
Q Consensus 366 ~R~a~~w~d~~ 376 (867)
.|.+.-++.-+
T Consensus 280 ~RW~rG~~qv~ 290 (439)
T TIGR03111 280 QRWQRGELEVS 290 (439)
T ss_pred HHHhccHHHHH
Confidence 67666655554
No 22
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.92 E-value=1.7e-24 Score=222.70 Aligned_cols=174 Identities=18% Similarity=0.213 Sum_probs=143.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
||||+||++. .|.+||+||++|+++.+ |||||||+|+|.+
T Consensus 1 viI~~~n~~~-~l~~~l~sl~~q~~~~~--eiiivD~~s~d~t------------------------------------- 40 (202)
T cd04185 1 AVVVTYNRLD-LLKECLDALLAQTRPPD--HIIVIDNASTDGT------------------------------------- 40 (202)
T ss_pred CEEEeeCCHH-HHHHHHHHHHhccCCCc--eEEEEECCCCcch-------------------------------------
Confidence 7999999765 99999999999999877 9999999999883
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc---CCCEEEEEcC
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TGKVLVFLDS 212 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A---~Gd~llfLDa 212 (867)
.+.+.++... .+++++..++|.|.+.++|.|++.| ++||++|+|+
T Consensus 41 -----------------------------~~~~~~~~~~---~~i~~~~~~~n~g~~~~~n~~~~~a~~~~~d~v~~ld~ 88 (202)
T cd04185 41 -----------------------------AEWLTSLGDL---DNIVYLRLPENLGGAGGFYEGVRRAYELGYDWIWLMDD 88 (202)
T ss_pred -----------------------------HHHHHHhcCC---CceEEEECccccchhhHHHHHHHHHhccCCCEEEEeCC
Confidence 2233333222 2489999999999999999999876 7999999999
Q ss_pred CcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccc
Q psy1765 213 HIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMA 292 (867)
Q Consensus 213 D~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 292 (867)
|+.++|+||+.+++.+.+...++++|.+...++ .
T Consensus 89 D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~----------------------------------------------~ 122 (202)
T cd04185 89 DAIPDPDALEKLLAYADKDNPQFLAPLVLDPDG----------------------------------------------S 122 (202)
T ss_pred CCCcChHHHHHHHHHHhcCCceEecceeEcCCC----------------------------------------------c
Confidence 999999999999999984445555554311100 2
Q ss_pred cceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEeccC
Q psy1765 293 GGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSR 349 (867)
Q Consensus 293 G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r~~ 349 (867)
+++++++|++|+++|+||+.+.++ +||+|+++|+.++|+++ ++|.+.+.|....+
T Consensus 123 ~~~~~~~~~~~~~~g~~~~~~~~~-~eD~~~~~r~~~~G~~i-~~~~~~~~h~~~~~ 177 (202)
T cd04185 123 FVGVLISRRVVEKIGLPDKEFFIW-GDDTEYTLRASKAGPGI-YVPDAVVVHKTAIN 177 (202)
T ss_pred eEEEEEeHHHHHHhCCCChhhhcc-chHHHHHHHHHHcCCcE-EecceEEEEccccc
Confidence 345789999999999999998887 79999999999999999 99999999976443
No 23
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=99.92 E-value=2.8e-24 Score=226.57 Aligned_cols=198 Identities=16% Similarity=0.146 Sum_probs=143.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
+|||+||++.+.|.+||+||++| .. |||||||+|+|.+
T Consensus 1 ~vI~~yn~~~~~l~~~l~sl~~q---~~--~iivvDn~s~~~~------------------------------------- 38 (237)
T cd02526 1 AVVVTYNPDLSKLKELLAALAEQ---VD--KVVVVDNSSGNDI------------------------------------- 38 (237)
T ss_pred CEEEEecCCHHHHHHHHHHHhcc---CC--EEEEEeCCCCccH-------------------------------------
Confidence 58999998845999999999998 34 9999999988762
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCC---CEEEEEcC
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATG---KVLVFLDS 212 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~G---d~llfLDa 212 (867)
....++ ..+++++++.++|.|+++|+|.|++.|+| |||+|+|+
T Consensus 39 ------------------------------~~~~~~----~~~~i~~i~~~~n~G~~~a~N~g~~~a~~~~~d~v~~lD~ 84 (237)
T cd02526 39 ------------------------------ELRLRL----NSEKIELIHLGENLGIAKALNIGIKAALENGADYVLLFDQ 84 (237)
T ss_pred ------------------------------HHHhhc----cCCcEEEEECCCceehHHhhhHHHHHHHhCCCCEEEEECC
Confidence 111111 12689999999999999999999999988 99999999
Q ss_pred CcccCccchHHHH---HHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccc
Q psy1765 213 HIEVNTHWLEPLL---VPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILS 288 (867)
Q Consensus 213 D~~v~p~wLe~Ll---~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 288 (867)
|+.++|+||+.++ ..+.+++. ++++|.+...+....... .. ...+.. .. ...........
T Consensus 85 D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~---~~--------~~~~~~~~~~~ 148 (237)
T cd02526 85 DSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPG---VR--KSGYKL---RI--------QKEGEEGLKEV 148 (237)
T ss_pred CCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccc---ee--ccCccc---ee--------cccccCCceEe
Confidence 9999999999995 44444544 445554432221111000 00 000000 00 00001112234
Q ss_pred cccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 289 PTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 289 ~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
..+.+++++++|++|+++||||+.++. ++||+||++|+.++|+++.++|.+.|.|..
T Consensus 149 ~~~~~~~~~~rr~~~~~~ggfd~~~~~-~~eD~d~~~r~~~~G~~~~~~~~~~v~h~~ 205 (237)
T cd02526 149 DFLITSGSLISLEALEKVGGFDEDLFI-DYVDTEWCLRARSKGYKIYVVPDAVLKHEL 205 (237)
T ss_pred eeeeccceEEcHHHHHHhCCCCHHHcC-ccchHHHHHHHHHcCCcEEEEcCeEEEecc
Confidence 455677789999999999999999875 489999999999999999999999999965
No 24
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=99.92 E-value=6.2e-24 Score=224.98 Aligned_cols=207 Identities=18% Similarity=0.204 Sum_probs=151.0
Q ss_pred cEEEEEEeCCCChHHHHHHHHHHHhcCcc--ccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHH
Q psy1765 53 STSVIICFYNEHPATLYRSVQTLLSRTGQ--SLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRA 130 (867)
Q Consensus 53 ~vSVIIp~yNe~~~~l~~~l~Svl~qt~~--~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a 130 (867)
++|||||+||++. .|.++|+|+++|+++ ++ |||||||+|+|++
T Consensus 1 ~~sIiip~~n~~~-~l~~~l~sl~~q~~~~~~~--evivvd~~s~d~~-------------------------------- 45 (249)
T cd02525 1 FVSIIIPVRNEEK-YIEELLESLLNQSYPKDLI--EIIVVDGGSTDGT-------------------------------- 45 (249)
T ss_pred CEEEEEEcCCchh-hHHHHHHHHHhccCCCCcc--EEEEEeCCCCccH--------------------------------
Confidence 4899999999875 999999999999985 55 9999999998872
Q ss_pred hhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEE
Q psy1765 131 RMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFL 210 (867)
Q Consensus 131 ~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfL 210 (867)
.+.+..+.++. +.++++.++ +.|.+.|+|.|++.|++|||+||
T Consensus 46 ----------------------------------~~~~~~~~~~~--~~v~~i~~~-~~~~~~a~N~g~~~a~~d~v~~l 88 (249)
T cd02525 46 ----------------------------------REIVQEYAAKD--PRIRLIDNP-KRIQSAGLNIGIRNSRGDIIIRV 88 (249)
T ss_pred ----------------------------------HHHHHHHHhcC--CeEEEEeCC-CCCchHHHHHHHHHhCCCEEEEE
Confidence 23344444433 679999877 67899999999999999999999
Q ss_pred cCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccc
Q psy1765 211 DSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPT 290 (867)
Q Consensus 211 DaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~ 290 (867)
|+|+.++|+||+.+++.+.+.+..++++............ .+.+........ ........ .......
T Consensus 89 D~D~~~~~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~~~~~~~~~~~--~~~~~~~~---~~~~~~~ 155 (249)
T cd02525 89 DAHAVYPKDYILELVEALKRTGADNVGGPMETIGESKFQK--------AIAVAQSSPLGS--GGSAYRGG---AVKIGYV 155 (249)
T ss_pred CCCccCCHHHHHHHHHHHhcCCCCEEecceecCCCChHHH--------HHHHHhhchhcc--CCcccccc---ccccccc
Confidence 9999999999999999888776666655443322221110 000000000000 00000000 0000234
Q ss_pred cccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 291 MAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 291 ~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
..|++++++|++|.++|+||+.+.. +||.||++|++++|+++.++|.+.+.|..
T Consensus 156 ~~~~~~~~~~~~~~~~g~~~~~~~~--~eD~~l~~r~~~~G~~~~~~~~~~~~~~~ 209 (249)
T cd02525 156 DTVHHGAYRREVFEKVGGFDESLVR--NEDAELNYRLRKAGYKIWLSPDIRVYYYP 209 (249)
T ss_pred cccccceEEHHHHHHhCCCCcccCc--cchhHHHHHHHHcCcEEEEcCCeEEEEcC
Confidence 5678889999999999999998753 79999999999999999999999998865
No 25
>PRK10018 putative glycosyl transferase; Provisional
Probab=99.91 E-value=1.4e-23 Score=226.61 Aligned_cols=203 Identities=17% Similarity=0.214 Sum_probs=141.5
Q ss_pred CCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHH
Q psy1765 50 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIR 129 (867)
Q Consensus 50 ~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 129 (867)
..|.||||||+||++. .|.+||+||++|+++++ |||||||||++.
T Consensus 3 ~~p~VSVIip~yN~~~-~l~~~l~Svl~Qt~~~~--EiIVVDDgS~~~-------------------------------- 47 (279)
T PRK10018 3 DNPLISIYMPTWNRQQ-LAIRAIKSVLRQDYSNW--EMIIVDDCSTSW-------------------------------- 47 (279)
T ss_pred CCCEEEEEEEeCCCHH-HHHHHHHHHHhCCCCCe--EEEEEECCCCCH--------------------------------
Confidence 4689999999999776 99999999999999998 999999999853
Q ss_pred HhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEE
Q psy1765 130 ARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF 209 (867)
Q Consensus 130 a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llf 209 (867)
+.+.++++....++|++++++.|.|.+.|+|.|++.|+||||+|
T Consensus 48 ------------------------------------~~~~~~~~~~~~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~I~~ 91 (279)
T PRK10018 48 ------------------------------------EQLQQYVTALNDPRITYIHNDINSGACAVRNQAIMLAQGEYITG 91 (279)
T ss_pred ------------------------------------HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 22444544433478999999999999999999999999999999
Q ss_pred EcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccc
Q psy1765 210 LDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILS 288 (867)
Q Consensus 210 LDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 288 (867)
||+|+.+.|++|+.+++.+.+... ..+... +.+.... .+ + ...... ..+..... . ..+..
T Consensus 92 lDaDD~~~p~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~-------~---~~~~~~--~~p~~~~~----~-~~~~~ 152 (279)
T PRK10018 92 IDDDDEWTPNRLSVFLAHKQQLVTHAFLYAN-DYVCQGE-VY-------S---QPASLP--LYPKSPYS----R-RLFYK 152 (279)
T ss_pred ECCCCCCCccHHHHHHHHHHhCCCccEEEcc-ceeecCc-cc-------c---cccccC--CCCCCCCC----H-HHHHH
Confidence 999999999999999999876432 222211 0111000 00 0 000000 00000000 0 00001
Q ss_pred cccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEccc-EEEEE
Q psy1765 289 PTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCS-RIGHV 345 (867)
Q Consensus 289 ~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s-~V~H~ 345 (867)
....|...++++..+. .++|||.+.. .||.||++|+...|+.+..+|.+ .++|+
T Consensus 153 ~n~ig~~~~~~~~~~~-~~~fd~~~~~--~eDydlwlrl~~~~~~~~~~~~~l~~y~~ 207 (279)
T PRK10018 153 RNIIGNQVFTWAWRFK-ECLFDTELKA--AQDYDIFLRMVVEYGEPWKVEEATQILHI 207 (279)
T ss_pred hcCcCceeeehhhhhh-hcccCCCCCc--cccHHHHHHHHHhcCceEeeccceEEEEc
Confidence 1223444455555554 5789999874 79999999999999999999987 55665
No 26
>KOG3738|consensus
Probab=99.91 E-value=1e-24 Score=230.02 Aligned_cols=350 Identities=27% Similarity=0.426 Sum_probs=212.5
Q ss_pred CceEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcC----CCCEEEEEcCCCc
Q psy1765 114 GRVHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLN----NGRVHLYRTSKRE 189 (867)
Q Consensus 114 ~~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~----~~~vrii~~~~n~ 189 (867)
.++++.++.+|+|++++|+.|+..|.|.+.. +|+..+.|+-+.-.| +-+-++... .|-|.+|..+ |+
T Consensus 179 ~kvr~LRN~~ReGLirSRvrGAdvA~a~vlt--FLDSHcEvN~~WLeP------LL~Rvaed~trvVsPiiDvIn~d-nf 249 (559)
T KOG3738|consen 179 PKVRVLRNNEREGLIRSRVRGADVAQATVLT--FLDSHCEVNEGWLEP------LLERVAEDTTRVVSPIIDVINLD-NF 249 (559)
T ss_pred heeeeecccchhhhhhhhccccccccceEEE--EEecceeecchhhHH------HHHHHhhcccceeeccccccccc-cc
Confidence 3688999999999999999999999999876 788888888765543 333333321 1344555554 55
Q ss_pred CchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHH--hcCC-----ceeeeEEeeecCCCcee----cccccccc
Q psy1765 190 GLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA--ERTN-----TVTVPIIDIINADTFQY----TSSALVRG 258 (867)
Q Consensus 190 G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~--~~~~-----~vv~p~i~~i~~~~~~~----~~~~~~~g 258 (867)
.+.+|. +.-+|-| |..+.-.|...-++.-. .+|+ -++++.+..|+..-|.+ ......+|
T Consensus 250 ~Y~~as----adLrGGF------DWsLhF~We~~~~eqr~sr~~Pt~PirtP~iAGGlfvidk~wF~~LGkyd~~mdiWG 319 (559)
T KOG3738|consen 250 SYVGAS----ADLRGGF------DWSLHFKWEQMQLEQRESRADPTAPIRTPAIAGGLFVIDKEWFNELGKYDMDMDIWG 319 (559)
T ss_pred ccccch----hhhcCCc------ceEEEEEehhcCHHHHhhccCCCCcccCccccceeEEecHHHHHHhcccCccccccC
Confidence 443321 1123332 44444456543333222 2332 23333444555443332 22345566
Q ss_pred ccccccccccccCCcCcCCCCCCCCCcccccccccceEeE-e--H--HHHHHhCCCCCCCCCCcccchHHHHHHHHcCCe
Q psy1765 259 GFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAI-D--R--QYFDSLGQYDAGLEIWGGENLELSFRIWMCGGS 333 (867)
Q Consensus 259 ~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~ai-r--R--~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~ 333 (867)
|-+..+.|+ .+++||.+=| . | -+|.+--.|+ | . |+.+.
T Consensus 320 GEn~Elsfr---------------------vW~CGGslEIvPCSRVGHVFRkrHpy~--F-P-~gs~~------------ 362 (559)
T KOG3738|consen 320 GENLELSFR---------------------VWQCGGSLEIVPCSRVGHVFRKRHPYT--F-P-GGSGN------------ 362 (559)
T ss_pred CcceEEEEE---------------------EEeeCCeeEEEeccchhhhhhccCCCc--C-C-CCCCc------------
Confidence 655555544 1333333211 1 0 1122111111 0 0 11110
Q ss_pred EEEEcccEEEEEeccCCCCCCCCCCchhhhhhHHHHHhcHHHHHHHHhhcCCCcCCCCCCCchhHHHHHHHcCCcccccc
Q psy1765 334 LAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWY 413 (867)
Q Consensus 334 i~~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~~R~a~~w~d~~~~~~y~~~p~~~~~~~gdi~~r~~lr~~l~ck~F~Wy 413 (867)
-|. +|.+|.||+||||||.+||+.+|.++.+.||++.+|+++|++++||||+||
T Consensus 363 -----------------ty~---------~NTkr~AEvWmDEYK~~yyaarPsAr~vpfg~i~~rL~~Rk~l~CksFkWY 416 (559)
T KOG3738|consen 363 -----------------TYI---------KNTKRAAEVWMDEYKNYYYAARPSARRVPFGNIYDRLELRKKLRCKSFKWY 416 (559)
T ss_pred -----------------chh---------hcchHHHHHHHHHHHHHHHhcCchhhcCCCccHHHHHHHHhhcCCcchhhh
Confidence 111 578999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCcCCCchHHHHhhhhccccCCCCCCCccccccccCceeEEEeecchhhhhhhccCcccCCCCccCCchhHhhh
Q psy1765 414 LDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLR 493 (867)
Q Consensus 414 l~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~p~~s~~~~~~N~~R~aeVWmDeyk~~~y~~~p~~~~~~~gdis~r~~LR 493 (867)
|+||||||.+|.+..... . .+|--..|+|.-.+.- .+
T Consensus 417 LenVyPeL~ip~~~~~~~-------------------g----~lrqg~~Cl~s~~~~~---~~----------------- 453 (559)
T KOG3738|consen 417 LENVYPELRIPFKELIAT-------------------G----TLRQGDNCLDSQGQNS---QE----------------- 453 (559)
T ss_pred hhhcCcceeccccccccc-------------------c----chhccchhhhhhhccc---cc-----------------
Confidence 999999999997765421 0 1122222333322110 00
Q ss_pred hhccccccccccccccCccccCCCcHHHHhhhhhcccCCCcccccccccccccceeeeecCCCceecccCCCCCCCcEEE
Q psy1765 494 ARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVL 573 (867)
Q Consensus 494 ~~l~CksF~Wyl~nv~p~~~~p~~~~~~~~~~~~~~~~~~~~~~~g~~rn~~~~g~ir~~~~~~CLD~~~~~~~g~~v~l 573 (867)
.+. ..+|... .-|++|... | ..+-.+...++||++.. .++|.+|.|
T Consensus 454 ---------------~~g-l~~C~~s-~~nqqwa~~-------~---------t~~~~~~~~elCL~v~~-~~pg~~v~l 499 (559)
T KOG3738|consen 454 ---------------ALG-LASCHGS-GGNQQWAFL-------R---------TSTQLITHRELCLAVGS-NTPGSPVAL 499 (559)
T ss_pred ---------------Ccc-eeecccC-CCCcchhhh-------h---------hhhhHHHHHhhhheeec-CCCCCeEEE
Confidence 000 1233331 224555532 0 11122356899999864 578999999
Q ss_pred EecCCCCCCceeeecCCCceEEeeceeeecCC-Cc--cEEEeCCCCCCCcce
Q psy1765 574 KKCDELSKTQHWSKTDKSELVLAELLCLDAGA-TK--PKLTKCHEMGGSQEY 622 (867)
Q Consensus 574 ~~C~~~~~~Q~w~~t~~~~i~~~~~~CLd~~g-~~--v~l~~C~~~~~~Q~~ 622 (867)
.+|......|.|.-.........+.+|||... +. +.+..|......|.|
T Consensus 500 ~~C~~~e~~q~~v~~~~~l~h~~s~KOGd~~~~g~~~l~~~~C~~~~~sQ~w 551 (559)
T KOG3738|consen 500 VPCGNNETKQRWVELGGHLLHAGSHLCLDNPLKGRWLLEVSTCESHLVSQSW 551 (559)
T ss_pred EecCCCCCceEEEecCCchhcccccceeccccCCCcceeeccccccccccee
Confidence 99998888999988776665567899999873 33 678899888777875
No 27
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.91 E-value=8.6e-24 Score=220.98 Aligned_cols=205 Identities=19% Similarity=0.172 Sum_probs=143.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
||||+||++. .|.+||+||+.|++++...|||||||+|+|++
T Consensus 1 viip~~n~~~-~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t------------------------------------- 42 (229)
T cd04192 1 VVIAARNEAE-NLPRLLQSLSALDYPKEKFEVILVDDHSTDGT------------------------------------- 42 (229)
T ss_pred CEEEecCcHH-HHHHHHHHHHhCCCCCCceEEEEEcCCCCcCh-------------------------------------
Confidence 7999999765 99999999999999882229999999998883
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcC--CCcCchhHHhHhhhhcCCCEEEEEcCC
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTS--KREGLIRARMFGAKYATGKVLVFLDSH 213 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~--~n~G~a~ArN~G~~~A~Gd~llfLDaD 213 (867)
.+.+. +......++++++..+ .+.|.+.|+|.|++.++||||+|+|+|
T Consensus 43 -----------------------------~~~~~-~~~~~~~~~v~~~~~~~~~~~g~~~a~n~g~~~~~~d~i~~~D~D 92 (229)
T cd04192 43 -----------------------------VQILE-FAAAKPNFQLKILNNSRVSISGKKNALTTAIKAAKGDWIVTTDAD 92 (229)
T ss_pred -----------------------------HHHHH-HHHhCCCcceEEeeccCcccchhHHHHHHHHHHhcCCEEEEECCC
Confidence 22233 2223334678888876 588999999999999999999999999
Q ss_pred cccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccccccc
Q psy1765 214 IEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAG 293 (867)
Q Consensus 214 ~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G 293 (867)
+.+.|+||+.+++.+.+++..++++.......+.+.... ..+.+....... . ... .........|
T Consensus 93 ~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~--~-~~~-------~~~~~~~~~g 157 (229)
T cd04192 93 CVVPSNWLLTFVAFIQKEQIGLVAGPVIYFKGKSLLAKF-----QRLDWLSLLGLI--A-GSF-------GLGKPFMCNG 157 (229)
T ss_pred cccCHHHHHHHHHHhhcCCCcEEeeeeeecCCccHHHHH-----HHHHHHHHHHHH--h-hHH-------HhcCcccccc
Confidence 999999999999998877666555443222122111000 000000000000 0 000 0001124468
Q ss_pred ceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCC-eEEEEc--ccEEEE
Q psy1765 294 GLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGG-SLAMIP--CSRIGH 344 (867)
Q Consensus 294 ~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~-~i~~~P--~s~V~H 344 (867)
++++++|++|+++||||+.++.+ .||.|+++|+.+.|+ ++.+++ .+.++|
T Consensus 158 ~~~~~rr~~~~~~ggf~~~~~~~-~eD~~~~~~~~~~g~~~~~~~~~~~~~~~~ 210 (229)
T cd04192 158 ANMAYRKEAFFEVGGFEGNDHIA-SGDDELLLAKVASKYPKVAYLKNPEALVTT 210 (229)
T ss_pred ceEEEEHHHHHHhcCCccccccc-cCCHHHHHHHHHhCCCCEEEeeCcchheec
Confidence 89999999999999999987665 899999999999999 888874 444443
No 28
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=99.91 E-value=3.6e-24 Score=241.80 Aligned_cols=211 Identities=17% Similarity=0.215 Sum_probs=147.3
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
...|.||||||+|||+. .|.+||+|+++|+||++ |||||||+|+|.+
T Consensus 38 ~~~p~VSViiP~~nee~-~l~~~L~Sl~~q~Yp~~--EIivvdd~s~D~t------------------------------ 84 (373)
T TIGR03472 38 RAWPPVSVLKPLHGDEP-ELYENLASFCRQDYPGF--QMLFGVQDPDDPA------------------------------ 84 (373)
T ss_pred CCCCCeEEEEECCCCCh-hHHHHHHHHHhcCCCCe--EEEEEeCCCCCcH------------------------------
Confidence 34689999999999887 99999999999999998 9999999998872
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCc---hhHHhHhhhhcCCC
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGL---IRARMFGAKYATGK 205 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~---a~ArN~G~~~A~Gd 205 (867)
.+.++++.++++..+|+++..+++.|. ..+.+.+++.|+||
T Consensus 85 ------------------------------------~~iv~~~~~~~p~~~i~~v~~~~~~G~~~K~~~l~~~~~~a~ge 128 (373)
T TIGR03472 85 ------------------------------------LAVVRRLRADFPDADIDLVIDARRHGPNRKVSNLINMLPHARHD 128 (373)
T ss_pred ------------------------------------HHHHHHHHHhCCCCceEEEECCCCCCCChHHHHHHHHHHhccCC
Confidence 344555655553346888887777764 34455578999999
Q ss_pred EEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCc
Q psy1765 206 VLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKP 285 (867)
Q Consensus 206 ~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p 285 (867)
+|+|+|+|+.++|+||+.+++.+++...++|++........++... ......+. ...+........ .
T Consensus 129 ~i~~~DaD~~~~p~~L~~lv~~~~~~~v~~V~~~~~~~~~~~~~~~---l~~~~~~~------~~~~~~~~~~~~---~- 195 (373)
T TIGR03472 129 ILVIADSDISVGPDYLRQVVAPLADPDVGLVTCLYRGRPVPGFWSR---LGAMGINH------NFLPSVMVARAL---G- 195 (373)
T ss_pred EEEEECCCCCcChhHHHHHHHHhcCCCcceEeccccCCCCCCHHHH---HHHHHhhh------hhhHHHHHHHhc---c-
Confidence 9999999999999999999999975555666543221111111000 00000000 000000000000 0
Q ss_pred ccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEE
Q psy1765 286 ILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIG 343 (867)
Q Consensus 286 ~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~ 343 (867)
......|++|++||++|+++||||+..... .||++|+.|+.++|+++.+.|.+...
T Consensus 196 -~~~~~~G~~~a~RR~~l~~iGGf~~~~~~~-~ED~~l~~~i~~~G~~v~~~~~~v~~ 251 (373)
T TIGR03472 196 -RARFCFGATMALRRATLEAIGGLAALAHHL-ADDYWLGELVRALGLRVVLAPVVVDT 251 (373)
T ss_pred -CCccccChhhheeHHHHHHcCChHHhcccc-hHHHHHHHHHHHcCCeEEecchhhhc
Confidence 112356889999999999999999755443 79999999999999999999876433
No 29
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=99.91 E-value=1.3e-23 Score=228.12 Aligned_cols=210 Identities=23% Similarity=0.341 Sum_probs=145.4
Q ss_pred EEEEEeCCCCh-----HHHHHHHHHHHh-cCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 55 SVIICFYNEHP-----ATLYRSVQTLLS-RTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 55 SVIIp~yNe~~-----~~l~~~l~Svl~-qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
|||||++|... +.|..||.++.. +..+++ |||||||+|++..
T Consensus 1 SiIIPv~~~~~~~~i~~~l~~~l~~l~~~~~~~~~--eiIvvd~~s~~~~------------------------------ 48 (281)
T PF10111_consen 1 SIIIPVRNRSERPDILERLRNCLESLSQFQSDPDF--EIIVVDDGSSDEF------------------------------ 48 (281)
T ss_pred CEEEEecCCccchHHHHHHHHHHHHHHhcCCCCCE--EEEEEECCCchhH------------------------------
Confidence 79999999763 356677888877 445566 9999999988761
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCC---CcCchhHHhHhhhhcCCC
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSK---REGLIRARMFGAKYATGK 205 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~---n~G~a~ArN~G~~~A~Gd 205 (867)
.+.+.++.+.. ..++++..+. ..|.+.|||.|++.|++|
T Consensus 49 ------------------------------------~~~l~~~~~~~--~~~~~i~~~~~~~~f~~a~arN~g~~~A~~d 90 (281)
T PF10111_consen 49 ------------------------------------DEELKKLCEKN--GFIRYIRHEDNGEPFSRAKARNIGAKYARGD 90 (281)
T ss_pred ------------------------------------HHHHHHHHhcc--CceEEEEcCCCCCCcCHHHHHHHHHHHcCCC
Confidence 23345555443 3344665553 469999999999999999
Q ss_pred EEEEEcCCcccCccchHHHHH---HHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCC
Q psy1765 206 VLVFLDSHIEVNTHWLEPLLV---PIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSED 281 (867)
Q Consensus 206 ~llfLDaD~~v~p~wLe~Ll~---~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~ 281 (867)
+|+|+|+|++++|++|+.++. .+..++. .++.|....-...+..+... ....+...+. ..... .
T Consensus 91 ~l~flD~D~i~~~~~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~----~~~~~~~~~~-----~~~~~---~ 158 (281)
T PF10111_consen 91 YLIFLDADCIPSPDFIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQ----FKNLWDHEFL-----ESFIS---G 158 (281)
T ss_pred EEEEEcCCeeeCHHHHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhc----chhcchHHHH-----HHHhh---c
Confidence 999999999999999999999 6766654 44556442221111111000 0000000000 00000 0
Q ss_pred CCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 282 FIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 282 ~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
.........+.|+|++++|+.|.++|||||+|..||+||+||+.|+.+.|..+...|...++|..
T Consensus 159 ~~~~~~~~~~~s~~~~i~r~~f~~iGGfDE~f~G~G~ED~D~~~RL~~~~~~~~~~~~~~~~~~~ 223 (281)
T PF10111_consen 159 KNSLWEFIAFASSCFLINREDFLEIGGFDERFRGWGYEDIDFGYRLKKAGYKFKRSPDYLVYHSH 223 (281)
T ss_pred cccccccccccceEEEEEHHHHHHhCCCCccccCCCcchHHHHHHHHHcCCcEecChHHhccccc
Confidence 00111234556799999999999999999999999999999999999999999999999998864
No 30
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=3.5e-23 Score=211.17 Aligned_cols=194 Identities=19% Similarity=0.263 Sum_probs=143.2
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhh
Q psy1765 55 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFG 134 (867)
Q Consensus 55 SVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g 134 (867)
|||||+||++ +.|.+||.||++|+++++ |||||||+|+|++
T Consensus 1 sivi~~~n~~-~~l~~~l~sl~~q~~~~~--evivvDd~s~d~~------------------------------------ 41 (202)
T cd06433 1 SIITPTYNQA-ETLEETIDSVLSQTYPNI--EYIVIDGGSTDGT------------------------------------ 41 (202)
T ss_pred CEEEeccchH-HHHHHHHHHHHhCCCCCc--eEEEEeCCCCccH------------------------------------
Confidence 7999999976 499999999999999987 9999999999882
Q ss_pred hhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCc
Q psy1765 135 AKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI 214 (867)
Q Consensus 135 ~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~ 214 (867)
.+.+..+.. .+.++...++.|++.|+|.|++.|+||||+|+|+|+
T Consensus 42 ------------------------------~~~~~~~~~-----~~~~~~~~~~~g~~~a~n~~~~~a~~~~v~~ld~D~ 86 (202)
T cd06433 42 ------------------------------VDIIKKYED-----KITYWISEPDKGIYDAMNKGIALATGDIIGFLNSDD 86 (202)
T ss_pred ------------------------------HHHHHHhHh-----hcEEEEecCCcCHHHHHHHHHHHcCCCEEEEeCCCc
Confidence 223333321 234455567999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcC-CceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccccccc
Q psy1765 215 EVNTHWLEPLLVPIAERT-NTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAG 293 (867)
Q Consensus 215 ~v~p~wLe~Ll~~l~~~~-~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G 293 (867)
.+.++++..++..+...+ ..++++.....+.+........ ..... .........+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~-----------------~~~~~-----~~~~~~~~~~~~ 144 (202)
T cd06433 87 TLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGRVIGRRR-----------------PPPFL-----DKFLLYGMPICH 144 (202)
T ss_pred ccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCCcccCCC-----------------Ccchh-----hhHHhhcCcccC
Confidence 999999999997666554 4566555433332221110000 00000 000011234556
Q ss_pred ceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 294 GLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 294 ~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
++++++|++|+++|+||+.+.. +||.||++|+++.|+++.++|...+.|..
T Consensus 145 ~~~~~~~~~~~~~~~f~~~~~~--~~D~~~~~r~~~~g~~~~~~~~~~~~~~~ 195 (202)
T cd06433 145 QATFFRRSLFEKYGGFDESYRI--AADYDLLLRLLLAGKIFKYLPEVLAAFRL 195 (202)
T ss_pred cceEEEHHHHHHhCCCchhhCc--hhhHHHHHHHHHcCCceEecchhhhhhee
Confidence 6788999999999999998864 68999999999999999999988877654
No 31
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.90 E-value=5e-23 Score=203.42 Aligned_cols=164 Identities=23% Similarity=0.360 Sum_probs=140.9
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
||||+||+. ..|.++|.|+.+|+++.+ |||||||+|++.+
T Consensus 1 vii~~~~~~-~~l~~~l~sl~~~~~~~~--~iiivdd~s~~~~------------------------------------- 40 (166)
T cd04186 1 IIIVNYNSL-EYLKACLDSLLAQTYPDF--EVIVVDNASTDGS------------------------------------- 40 (166)
T ss_pred CEEEecCCH-HHHHHHHHHHHhccCCCe--EEEEEECCCCchH-------------------------------------
Confidence 699999985 599999999999998777 9999999998872
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcc
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIE 215 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~ 215 (867)
.+.+.++ . ++++++..+++.|++.|+|.|++.|++++++|+|+|+.
T Consensus 41 -----------------------------~~~~~~~---~--~~~~~~~~~~~~g~~~a~n~~~~~~~~~~i~~~D~D~~ 86 (166)
T cd04186 41 -----------------------------VELLREL---F--PEVRLIRNGENLGFGAGNNQGIREAKGDYVLLLNPDTV 86 (166)
T ss_pred -----------------------------HHHHHHh---C--CCeEEEecCCCcChHHHhhHHHhhCCCCEEEEECCCcE
Confidence 1122221 1 36889999899999999999999999999999999999
Q ss_pred cCccchHHHHHHHHhcCCc-eeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccc
Q psy1765 216 VNTHWLEPLLVPIAERTNT-VTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGG 294 (867)
Q Consensus 216 v~p~wLe~Ll~~l~~~~~~-vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~ 294 (867)
+.++|++.+++.+.+.+.. ++++. ..|+
T Consensus 87 ~~~~~l~~~~~~~~~~~~~~~~~~~---------------------------------------------------~~~~ 115 (166)
T cd04186 87 VEPGALLELLDAAEQDPDVGIVGPK---------------------------------------------------VSGA 115 (166)
T ss_pred ECccHHHHHHHHHHhCCCceEEEcc---------------------------------------------------Ccee
Confidence 9999999999988776543 33221 4578
Q ss_pred eEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEE
Q psy1765 295 LFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHV 345 (867)
Q Consensus 295 ~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~ 345 (867)
+++++|++|+++|+||+.+.. ++||.||+.|+.+.|+++.++|++.++|.
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~~i~~~~~~~~~h~ 165 (166)
T cd04186 116 FLLVRREVFEEVGGFDEDFFL-YYEDVDLCLRARLAGYRVLYVPQAVIYHH 165 (166)
T ss_pred eEeeeHHHHHHcCCCChhhhc-cccHHHHHHHHHHcCCeEEEccceEEEec
Confidence 899999999999999999877 48999999999999999999999999995
No 32
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=99.90 E-value=1.8e-23 Score=218.28 Aligned_cols=202 Identities=22% Similarity=0.221 Sum_probs=143.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCc-cccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTG-QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFG 134 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~-~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g 134 (867)
||||+||++. .|.++|+||++|++ ..+ |||||||+|+|++
T Consensus 1 ViIp~yn~~~-~l~~~l~sl~~q~~~~~~--eiiiVDd~S~d~t------------------------------------ 41 (224)
T cd06442 1 IIIPTYNERE-NIPELIERLDAALKGIDY--EIIVVDDNSPDGT------------------------------------ 41 (224)
T ss_pred CeEeccchhh-hHHHHHHHHHHhhcCCCe--EEEEEeCCCCCCh------------------------------------
Confidence 7999999775 89999999999997 566 9999999998873
Q ss_pred hhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCc
Q psy1765 135 AKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI 214 (867)
Q Consensus 135 ~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~ 214 (867)
.+.+.++.+.. +.+++++.++|.|++.|+|.|++.|+||||+|||+|+
T Consensus 42 ------------------------------~~~~~~~~~~~--~~i~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D~ 89 (224)
T cd06442 42 ------------------------------AEIVRELAKEY--PRVRLIVRPGKRGLGSAYIEGFKAARGDVIVVMDADL 89 (224)
T ss_pred ------------------------------HHHHHHHHHhC--CceEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 33455555554 6789999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccc
Q psy1765 215 EVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGG 294 (867)
Q Consensus 215 ~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~ 294 (867)
.++|+||+.+++.+..++..+|++..... ..... .|.....+............ .........|+
T Consensus 90 ~~~~~~l~~l~~~~~~~~~~~v~g~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 154 (224)
T cd06442 90 SHPPEYIPELLEAQLEGGADLVIGSRYVE-GGGVE-----------GWGLKRKLISRGANLLARLL---LGRKVSDPTSG 154 (224)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEEeeeec-CCccC-----------CCcHHHHHHHHHHHHHHHHH---cCCCCCCCCCc
Confidence 99999999999997665555544332111 11110 01100000000000000000 00123345678
Q ss_pred eEeEeHHHHHHhC-CCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 295 LFAIDRQYFDSLG-QYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 295 ~~airR~~f~~vG-gfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
+++++|++|+++| ++++..+ .+|+||++|++++|+++.++|...+.|..
T Consensus 155 ~~~~~r~~~~~ig~~~~~~~~---~~~~~l~~~~~~~g~~i~~~p~~~~~~~~ 204 (224)
T cd06442 155 FRAYRREVLEKLIDSLVSKGY---KFQLELLVRARRLGYRIVEVPITFVDREH 204 (224)
T ss_pred cchhhHHHHHHHhhhccCCCc---EEeHHHHHHHHHcCCeEEEeCeEEeccCC
Confidence 8999999999998 4444321 45899999999999999999988877754
No 33
>PRK10073 putative glycosyl transferase; Provisional
Probab=99.90 E-value=1.1e-22 Score=225.26 Aligned_cols=208 Identities=22% Similarity=0.195 Sum_probs=143.2
Q ss_pred CCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHH
Q psy1765 50 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIR 129 (867)
Q Consensus 50 ~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 129 (867)
.+|+||||||+||++ +.|.+||+||++|+++++ |||||||||+|+|
T Consensus 4 ~~p~vSVIIP~yN~~-~~L~~~l~Sl~~Qt~~~~--EIIiVdDgStD~t------------------------------- 49 (328)
T PRK10073 4 STPKLSIIIPLYNAG-KDFRAFMESLIAQTWTAL--EIIIVNDGSTDNS------------------------------- 49 (328)
T ss_pred CCCeEEEEEeccCCH-HHHHHHHHHHHhCCCCCe--EEEEEeCCCCccH-------------------------------
Confidence 358999999999976 499999999999999998 9999999999983
Q ss_pred HhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEE
Q psy1765 130 ARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVF 209 (867)
Q Consensus 130 a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llf 209 (867)
.+.+.++.+.. +++++++.+ |.|++.|||.|++.|+||||+|
T Consensus 50 -----------------------------------~~i~~~~~~~~--~~i~vi~~~-n~G~~~arN~gl~~a~g~yi~f 91 (328)
T PRK10073 50 -----------------------------------VEIAKHYAENY--PHVRLLHQA-NAGVSVARNTGLAVATGKYVAF 91 (328)
T ss_pred -----------------------------------HHHHHHHHhhC--CCEEEEECC-CCChHHHHHHHHHhCCCCEEEE
Confidence 34566666555 789999865 9999999999999999999999
Q ss_pred EcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccc-cccc-cccccccccccccCCcCcCCCCCCCCCccc
Q psy1765 210 LDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSS-ALVR-GGFNWGLHFKWENLPKGTLNSSEDFIKPIL 287 (867)
Q Consensus 210 LDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~-~~~~-g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~ 287 (867)
+|+|+.+.|++++.+++.+.+++..++......+..+.-..... +... +.........|.. .... ...+
T Consensus 92 lD~DD~~~p~~l~~l~~~~~~~~~dvv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~l~-----~~~~- 162 (328)
T PRK10073 92 PDADDVVYPTMYETLMTMALEDDLDVAQCNADWCFRDTGETWQSIPSDRLRSTGVLSGPDWLR---MALS-----SRRW- 162 (328)
T ss_pred ECCCCccChhHHHHHHHHHHhCCCCEEEEccEEEEeCCCccccccccccccccceechHHHHH---HHHh-----hCCC-
Confidence 99999999999999999987766555432221111111000000 0000 0000000000000 0000 0000
Q ss_pred ccccccceEeEeHHHHHHhC-CCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEE
Q psy1765 288 SPTMAGGLFAIDRQYFDSLG-QYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIG 343 (867)
Q Consensus 288 ~~~~~G~~~airR~~f~~vG-gfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~ 343 (867)
.. ...+-++||+++++.| .|++++. +||+++.+++...+.++.++|.....
T Consensus 163 -~~-~~~~~l~Rr~~l~~~~~~f~~~~~---~eD~~~~~~~~~~~~~v~~~~~~ly~ 214 (328)
T PRK10073 163 -TH-VVWLGVYRRDFIVKNNIKFEPGLH---HQDIPWTTEVMFNALRVRYTEQSLYK 214 (328)
T ss_pred -Cc-cHhHHHHHHHHHHHcCCccCCCCE---eccHHHHHHHHHHCCEEEEECCCEEE
Confidence 00 1123478999999988 4777663 69999999999999999999975443
No 34
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=99.89 E-value=6.8e-23 Score=217.80 Aligned_cols=212 Identities=18% Similarity=0.176 Sum_probs=148.7
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhc--CccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchh
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSR--TGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREG 126 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~q--t~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 126 (867)
..+|+||||||+|||+. .|..+++++.++ +++++ |||||||||+|++
T Consensus 6 ~~~~~vsVvIp~yne~~-~l~~~l~~l~~~~~~~~~~--eiivvDdgS~D~t---------------------------- 54 (243)
T PLN02726 6 EGAMKYSIIVPTYNERL-NIALIVYLIFKALQDVKDF--EIIVVDDGSPDGT---------------------------- 54 (243)
T ss_pred CCCceEEEEEccCCchh-hHHHHHHHHHHHhccCCCe--EEEEEeCCCCCCH----------------------------
Confidence 35689999999999876 899999988764 34455 9999999998873
Q ss_pred hHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCE
Q psy1765 127 LIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKV 206 (867)
Q Consensus 127 i~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~ 206 (867)
.+.+.++.+......++++..++|.|++.|+|.|++.|+|||
T Consensus 55 --------------------------------------~~i~~~~~~~~~~~~v~~~~~~~n~G~~~a~n~g~~~a~g~~ 96 (243)
T PLN02726 55 --------------------------------------QDVVKQLQKVYGEDRILLRPRPGKLGLGTAYIHGLKHASGDF 96 (243)
T ss_pred --------------------------------------HHHHHHHHHhcCCCcEEEEecCCCCCHHHHHHHHHHHcCCCE
Confidence 334444444443357889998999999999999999999999
Q ss_pred EEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcc
Q psy1765 207 LVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPI 286 (867)
Q Consensus 207 llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~ 286 (867)
|+|+|+|+.++|+||+.+++.+.++..++|.+.....++. .. .....+..... .+.+. .... ...
T Consensus 97 i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~-~~--~~~~~r~~~~~--~~~~~---~~~~-------~~~ 161 (243)
T PLN02726 97 VVIMDADLSHHPKYLPSFIKKQRETGADIVTGTRYVKGGG-VH--GWDLRRKLTSR--GANVL---AQTL-------LWP 161 (243)
T ss_pred EEEEcCCCCCCHHHHHHHHHHHHhcCCcEEEEccccCCCC-cC--CccHHHHHHHH--HHHHH---HHHH-------hCC
Confidence 9999999999999999999999876666665533111110 00 00000000000 00000 0000 001
Q ss_pred cccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 287 LSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 287 ~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
......|+++++||++|++++.+.+... | .+|+||++|+..+|+++..+|...+.|..
T Consensus 162 ~~~d~~g~~~~~rr~~~~~i~~~~~~~~-~-~~~~el~~~~~~~g~~i~~vp~~~~~r~~ 219 (243)
T PLN02726 162 GVSDLTGSFRLYKRSALEDLVSSVVSKG-Y-VFQMEIIVRASRKGYRIEEVPITFVDRVY 219 (243)
T ss_pred CCCcCCCcccceeHHHHHHHHhhccCCC-c-EEehHHHHHHHHcCCcEEEeCcEEeCCCC
Confidence 2334568899999999999987665432 2 57899999999999999999988777654
No 35
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=99.89 E-value=9.4e-23 Score=217.14 Aligned_cols=205 Identities=22% Similarity=0.251 Sum_probs=151.8
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
..+|++|||||+||++. .|.+||+|+++|+++....|||||||+|+|++
T Consensus 26 ~~~~~isVvip~~n~~~-~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t------------------------------ 74 (251)
T cd06439 26 AYLPTVTIIIPAYNEEA-VIEAKLENLLALDYPRDRLEIIVVSDGSTDGT------------------------------ 74 (251)
T ss_pred CCCCEEEEEEecCCcHH-HHHHHHHHHHhCcCCCCcEEEEEEECCCCccH------------------------------
Confidence 56789999999999775 99999999999998873239999999999872
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEE
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLV 208 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~ll 208 (867)
.+.+.++.. .+++++..++|.|.+.|+|.|++.|+||||+
T Consensus 75 ------------------------------------~~~~~~~~~----~~v~~i~~~~~~g~~~a~n~gi~~a~~d~i~ 114 (251)
T cd06439 75 ------------------------------------AEIAREYAD----KGVKLLRFPERRGKAAALNRALALATGEIVV 114 (251)
T ss_pred ------------------------------------HHHHHHHhh----CcEEEEEcCCCCChHHHHHHHHHHcCCCEEE
Confidence 223333322 1689999999999999999999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILS 288 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 288 (867)
|+|+|+.++|+||+.+++.+..+..+++++.....+++. ... ...+.|.+....... .. .....
T Consensus 115 ~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~-----~~-----~~~~~ 178 (251)
T cd06439 115 FTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGG--SGS----GEGLYWKYENWLKRA-----ES-----RLGST 178 (251)
T ss_pred EEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcc--cch----hHHHHHHHHHHHHHH-----HH-----hcCCe
Confidence 999999999999999999997666677777665544432 000 000101110000000 00 00123
Q ss_pred cccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 289 PTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 289 ~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
....|++++++|++|+ +|++.. ..||.+++.|+...|+++.++|.+.++|..
T Consensus 179 ~~~~g~~~~~rr~~~~---~~~~~~---~~eD~~l~~~~~~~G~~~~~~~~~~~~~~~ 230 (251)
T cd06439 179 VGANGAIYAIRRELFR---PLPADT---INDDFVLPLRIARQGYRVVYEPDAVAYEEV 230 (251)
T ss_pred eeecchHHHhHHHHhc---CCCccc---chhHHHHHHHHHHcCCeEEeccccEEEEeC
Confidence 4567888899999998 666543 379999999999999999999999998865
No 36
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=99.89 E-value=2.4e-22 Score=241.81 Aligned_cols=205 Identities=16% Similarity=0.166 Sum_probs=146.9
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
+..|+||||||+|||+.+.+.++|.++++++||.-..|||||||||+|++
T Consensus 257 ~~~P~VsViIPtYNE~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t------------------------------ 306 (852)
T PRK11498 257 SLWPTVDIFVPTYNEDLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEF------------------------------ 306 (852)
T ss_pred CCCCcEEEEEecCCCcHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHH------------------------------
Confidence 35689999999999987778899999999999863339999999998872
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCC-cCchhHHhHhhhhcCCCEE
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKR-EGLIRARMFGAKYATGKVL 207 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n-~G~a~ArN~G~~~A~Gd~l 207 (867)
.+++++. ++++++.++| .|.++++|.|+++++||||
T Consensus 307 ----------------------------------------~~la~~~---~v~yI~R~~n~~gKAGnLN~aL~~a~GEyI 343 (852)
T PRK11498 307 ----------------------------------------RQFAQEV---GVKYIARPTHEHAKAGNINNALKYAKGEFV 343 (852)
T ss_pred ----------------------------------------HHHHHHC---CcEEEEeCCCCcchHHHHHHHHHhCCCCEE
Confidence 2223332 6888877654 4679999999999999999
Q ss_pred EEEcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceecccccccccccc-----ccccccccCCcCcCCCCCC
Q psy1765 208 VFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNW-----GLHFKWENLPKGTLNSSED 281 (867)
Q Consensus 208 lfLDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~-----~l~~~~~~~~~~~~~~~~~ 281 (867)
+++|+|+++.+++|+.++..+.+++. ++|.+.....+.+.++.. .+.+.. ...+.. .. .
T Consensus 344 avlDAD~ip~pdfL~~~V~~f~~dP~VglVQtp~~f~n~dp~~rn-----l~~~~~~~~e~~~fy~~-------iq---~ 408 (852)
T PRK11498 344 AIFDCDHVPTRSFLQMTMGWFLKDKKLAMMQTPHHFFSPDPFERN-----LGRFRKTPNEGTLFYGL-------VQ---D 408 (852)
T ss_pred EEECCCCCCChHHHHHHHHHHHhCCCeEEEEcceeccCCchHHHh-----hHHHhhcccchhHHHHH-------HH---h
Confidence 99999999999999999999877765 444332222222221110 000000 000000 00 0
Q ss_pred CCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEE
Q psy1765 282 FIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGH 344 (867)
Q Consensus 282 ~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H 344 (867)
.........++|+++++||++|+++||||++.. .||+|+++|+..+||++.|+|...+..
T Consensus 409 g~~~~~a~~~~Gs~aviRReaLeeVGGfd~~ti---tED~dlslRL~~~Gyrv~yl~~~~a~g 468 (852)
T PRK11498 409 GNDMWDATFFCGSCAVIRRKPLDEIGGIAVETV---TEDAHTSLRLHRRGYTSAYMRIPQAAG 468 (852)
T ss_pred HHHhhcccccccceeeeEHHHHHHhcCCCCCcc---CccHHHHHHHHHcCCEEEEEeccceeE
Confidence 001112345679999999999999999999752 799999999999999999998766653
No 37
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.89 E-value=2.8e-22 Score=208.90 Aligned_cols=185 Identities=20% Similarity=0.200 Sum_probs=132.5
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhh
Q psy1765 54 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMF 133 (867)
Q Consensus 54 vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~ 133 (867)
||||||+||++. .|.+||+||++|+++.+ |||||||+|+|++
T Consensus 1 vsvii~~~n~~~-~l~~~l~sl~~q~~~~~--evivvdd~s~d~~----------------------------------- 42 (221)
T cd02522 1 LSIIIPTLNEAE-NLPRLLASLRRLNPLPL--EIIVVDGGSTDGT----------------------------------- 42 (221)
T ss_pred CEEEEEccCcHH-HHHHHHHHHHhccCCCc--EEEEEeCCCCccH-----------------------------------
Confidence 699999999876 99999999999998777 9999999998882
Q ss_pred hhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCC
Q psy1765 134 GAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSH 213 (867)
Q Consensus 134 g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD 213 (867)
. +.+++ ..++++.. +.|.+.|+|.|+..|+|++|+|+|+|
T Consensus 43 -------------------------------~----~~~~~---~~~~~~~~--~~g~~~a~n~g~~~a~~~~i~~~D~D 82 (221)
T cd02522 43 -------------------------------V----AIARS---AGVVVISS--PKGRARQMNAGAAAARGDWLLFLHAD 82 (221)
T ss_pred -------------------------------H----HHHhc---CCeEEEeC--CcCHHHHHHHHHHhccCCEEEEEcCC
Confidence 1 11111 35666654 57899999999999999999999999
Q ss_pred cccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccccccc
Q psy1765 214 IEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAG 293 (867)
Q Consensus 214 ~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G 293 (867)
+.++++||+.++..+......++++.....+.. ..+.. ....+.... ..... ...+
T Consensus 83 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----~~~~~~~~~-----------------~~~~~-~~~~ 138 (221)
T cd02522 83 TRLPPDWDAAIIETLRADGAVAGAFRLRFDDPG-PRLRL-----LELGANLRS-----------------RLFGL-PYGD 138 (221)
T ss_pred CCCChhHHHHHHHHhhcCCcEEEEEEeeecCCc-cchhh-----hhhccccee-----------------cccCC-CcCC
Confidence 999999999998877665544433333221111 11000 000000000 00011 1234
Q ss_pred ceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEE
Q psy1765 294 GLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGH 344 (867)
Q Consensus 294 ~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H 344 (867)
.+++++|++|+++||||+.+ ++||+||++|++++|+++.+ |...+.+
T Consensus 139 ~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~~~~~-~~~~~~~ 185 (221)
T cd02522 139 QGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGRPALL-PSPVTTS 185 (221)
T ss_pred ceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCCEEEc-Cceeeec
Confidence 57899999999999999988 38999999999999999877 6555443
No 38
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.88 E-value=5.2e-22 Score=205.22 Aligned_cols=201 Identities=16% Similarity=0.183 Sum_probs=144.9
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhh
Q psy1765 55 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFG 134 (867)
Q Consensus 55 SVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g 134 (867)
|||||+||++. .|.+||+||++|+++.+ |||||||||+|++
T Consensus 1 sIvIp~yn~~~-~l~~~l~sl~~q~~~~~--eiiVvddgS~d~t------------------------------------ 41 (214)
T cd04196 1 AVLMATYNGEK-YLREQLDSILAQTYKND--ELIISDDGSTDGT------------------------------------ 41 (214)
T ss_pred CEEEEecCcHH-HHHHHHHHHHhCcCCCe--EEEEEeCCCCCCc------------------------------------
Confidence 79999999875 99999999999999887 9999999999883
Q ss_pred hhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCc
Q psy1765 135 AKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI 214 (867)
Q Consensus 135 ~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~ 214 (867)
.+.+.++..+. +..++++..++|.|.++++|.|+..|+||||+|+|+|+
T Consensus 42 ------------------------------~~~~~~~~~~~-~~~~~~~~~~~~~G~~~~~n~g~~~~~g~~v~~ld~Dd 90 (214)
T cd04196 42 ------------------------------VEIIKEYIDKD-PFIIILIRNGKNLGVARNFESLLQAADGDYVFFCDQDD 90 (214)
T ss_pred ------------------------------HHHHHHHHhcC-CceEEEEeCCCCccHHHHHHHHHHhCCCCEEEEECCCc
Confidence 33455555444 24688899999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccccccc
Q psy1765 215 EVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAG 293 (867)
Q Consensus 215 ~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G 293 (867)
.+.|++|+.+++.+.+++. .++++.....+.+....... + ........ ............+.|
T Consensus 91 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-----~~~~~~~~-----~~~~~~~~~~~~~~~ 154 (214)
T cd04196 91 IWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGES------F-----FEYQKIKP-----GTSFNNLLFQNVVTG 154 (214)
T ss_pred ccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccc------c-----ccccccCC-----ccCHHHHHHhCccCC
Confidence 9999999999999666554 34443322222221100000 0 00000000 000001112345568
Q ss_pred ceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEE
Q psy1765 294 GLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGH 344 (867)
Q Consensus 294 ~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H 344 (867)
++++++|++++++|+|++.+. .+||.++.+++.. |+++.++|...+.|
T Consensus 155 ~~~~~r~~~~~~~~~~~~~~~--~~~D~~~~~~~~~-~~~~~~~~~~~~~~ 202 (214)
T cd04196 155 CTMAFNRELLELALPFPDADV--IMHDWWLALLASA-FGKVVFLDEPLILY 202 (214)
T ss_pred ceeeEEHHHHHhhcccccccc--ccchHHHHHHHHH-cCceEEcchhHHHH
Confidence 889999999999999999752 2799999998877 77999999776643
No 39
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=99.87 E-value=3e-22 Score=210.82 Aligned_cols=205 Identities=17% Similarity=0.161 Sum_probs=143.8
Q ss_pred cEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhh
Q psy1765 53 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARM 132 (867)
Q Consensus 53 ~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~ 132 (867)
+||||||+|||+...|.+||+|+++|+ .+ |||||||+|+|++
T Consensus 1 ~isVvIp~~ne~~~~l~~~l~sl~~q~--~~--eiivvdd~s~d~~---------------------------------- 42 (235)
T cd06434 1 DVTVIIPVYDEDPDVFRECLRSILRQK--PL--EIIVVTDGDDEPY---------------------------------- 42 (235)
T ss_pred CeEEEEeecCCChHHHHHHHHHHHhCC--CC--EEEEEeCCCChHH----------------------------------
Confidence 489999999988459999999999998 34 9999999999882
Q ss_pred hhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcC
Q psy1765 133 FGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 212 (867)
Q Consensus 133 ~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDa 212 (867)
.+.+.+ ... .+.++++.. ++.|.+.|+|.|++.|+||||+|+|+
T Consensus 43 --------------------------------~~~l~~-~~~--~~~~~v~~~-~~~g~~~a~n~g~~~a~~d~v~~lD~ 86 (235)
T cd06434 43 --------------------------------LSILSQ-TVK--YGGIFVITV-PHPGKRRALAEGIRHVTTDIVVLLDS 86 (235)
T ss_pred --------------------------------HHHHHh-hcc--CCcEEEEec-CCCChHHHHHHHHHHhCCCEEEEECC
Confidence 111211 111 256777764 48999999999999999999999999
Q ss_pred CcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccc
Q psy1765 213 HIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMA 292 (867)
Q Consensus 213 D~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 292 (867)
|+.++|+||+.+++.+..+..++|++.+...+.....+. .....+-+..... .... .. .....+.+.
T Consensus 87 D~~~~~~~l~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~---~~~~~~~~~~~~~------~~~~--~~--~~~~~~~~~ 153 (235)
T cd06434 87 DTVWPPNALPEMLKPFEDPKVGGVGTNQRILRPRDSKWS---FLAAEYLERRNEE------IRAA--MS--YDGGVPCLS 153 (235)
T ss_pred CceeChhHHHHHHHhccCCCEeEEcCceEeecCcccHHH---HHHHHHHHHHHHH------HHHH--Hh--hCCCEEEcc
Confidence 999999999999999985455677765544433110000 0000000000000 0000 00 001235677
Q ss_pred cceEeEeHHHHHHhCCCCCCC--------CCCcccchHHHHHHHHcCCeEEEEcccEEEEE
Q psy1765 293 GGLFAIDRQYFDSLGQYDAGL--------EIWGGENLELSFRIWMCGGSLAMIPCSRIGHV 345 (867)
Q Consensus 293 G~~~airR~~f~~vGgfDe~~--------~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~ 345 (867)
|+++++||++++++++ ++.+ ....+||.+|+.|+.+.|+++.+.|.+.++|.
T Consensus 154 G~~~~~rr~~l~~~~~-~~~~~~~~~~~~~~~~~eD~~l~~~~~~~g~~~~~~~~~~~~~~ 213 (235)
T cd06434 154 GRTAAYRTEILKDFLF-LEEFTNETFMGRRLNAGDDRFLTRYVLSHGYKTVYQYTSEAYTE 213 (235)
T ss_pred CcHHHHHHHHHhhhhh-HHHhhhhhhcCCCCCcCchHHHHHHHHHCCCeEEEecCCeEEEE
Confidence 8899999999999754 4433 22348999999999999999999999999986
No 40
>PRK10063 putative glycosyl transferase; Provisional
Probab=99.87 E-value=5e-21 Score=203.95 Aligned_cols=192 Identities=15% Similarity=0.091 Sum_probs=131.3
Q ss_pred CcEEEEEEeCCCChHHHHHHHHHHHhc---CccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 52 PSTSVIICFYNEHPATLYRSVQTLLSR---TGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 52 P~vSVIIp~yNe~~~~l~~~l~Svl~q---t~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
|+||||||+||++. .|.+||+||+++ +++++ |||||||||+|++
T Consensus 1 ~~vSVIi~~yN~~~-~l~~~l~sl~~~~~~~~~~~--EiIVvDdgStD~t------------------------------ 47 (248)
T PRK10063 1 MLLSVITVAFRNLE-GIVKTHASLRHLAQDPGISF--EWIVVDGGSNDGT------------------------------ 47 (248)
T ss_pred CeEEEEEEeCCCHH-HHHHHHHHHHHHHhCCCCCE--EEEEEECcCcccH------------------------------
Confidence 68999999999766 999999999853 45677 9999999999883
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEE
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLV 208 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~ll 208 (867)
.+.+.++... .+++++..+ +.|+++|+|.|++.|+||||+
T Consensus 48 ------------------------------------~~i~~~~~~~---~~i~~i~~~-~~G~~~A~N~Gi~~a~g~~v~ 87 (248)
T PRK10063 48 ------------------------------------REFLENLNGI---FNLRFVSEP-DNGIYDAMNKGIAMAQGRFAL 87 (248)
T ss_pred ------------------------------------HHHHHHhccc---CCEEEEECC-CCCHHHHHHHHHHHcCCCEEE
Confidence 2334443221 358888876 779999999999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILS 288 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 288 (867)
|||+|+.+.|+.++.+......++..++++......++.... .+.. .+.. . .....
T Consensus 88 ~ld~DD~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~-----~~~~-----------~~~~-~-------~~~~~ 143 (248)
T PRK10063 88 FLNSGDIFHQDAANFVRQLKMQKDNAMIIGDALLDFGDGHKI-----KRSA-----------KPGW-Y-------IYHSL 143 (248)
T ss_pred EEeCCcccCcCHHHHHHHHHhCCCCeEEEeeeEEEcCCCcEE-----EEcc-----------CChh-H-------HhcCC
Confidence 999999999988765444333434444443321111111000 0000 0000 0 00001
Q ss_pred cccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEE
Q psy1765 289 PTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGH 344 (867)
Q Consensus 289 ~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H 344 (867)
.+.+..++++|+.|.. |+||+.+.. .||+||.+|++..|+++.++|...+.+
T Consensus 144 -~~~~~~~~~~~~~~~~-~~fd~~~~~--~~Dydl~lrl~~~g~~~~~v~~~l~~y 195 (248)
T PRK10063 144 -PASHQAIFFPVSGLKK-WRYDLQYKV--SSDYALAARLYKAGYAFKKLNGLVSEF 195 (248)
T ss_pred -CCCCcEEEEEHHHHhc-CCCCcccch--HHhHHHHHHHHHcCCcEEEcCceeEEE
Confidence 1223456789998874 889998754 699999999999999999999766553
No 41
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=99.87 E-value=9.7e-22 Score=238.25 Aligned_cols=228 Identities=14% Similarity=0.155 Sum_probs=151.9
Q ss_pred CCCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCc-hhhHHHHHhhcCCCceEEEEeccchh
Q psy1765 48 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNL-HGEVETFVKGLNDGRVHLYRTSKREG 126 (867)
Q Consensus 48 ~~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~g 126 (867)
++..|+||||||+|||+.+.+.+||.|+++++||.-..|||||||||+|++.- .+++ +.
T Consensus 127 ~~~~P~VsViIP~yNE~~~iv~~tl~s~~~~dYP~~~~eIiVvDDgStD~t~~~~~~~---~~----------------- 186 (713)
T TIGR03030 127 PEEWPTVDVFIPTYNEDLEIVATTVLAAKNMDYPADKFRVWILDDGGTDQKRNDPDPE---QA----------------- 186 (713)
T ss_pred cccCCeeEEEEcCCCCCHHHHHHHHHHHHhCCCCccceEEEEEECcCCccccccchhh---hh-----------------
Confidence 35679999999999999867788999999999984223999999999998300 0000 00
Q ss_pred hHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCc-CchhHHhHhhhhcCCC
Q psy1765 127 LIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKRE-GLIRARMFGAKYATGK 205 (867)
Q Consensus 127 i~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~-G~a~ArN~G~~~A~Gd 205 (867)
+++ ...+.+.++.++ .++++++.++|. +.++++|.|+++++||
T Consensus 187 ---------~~~------------------------~~~~~~~~l~~~---~~v~yi~r~~n~~~KAgnLN~al~~a~gd 230 (713)
T TIGR03030 187 ---------EAA------------------------QRREELKEFCRK---LGVNYITRPRNVHAKAGNINNALKHTDGE 230 (713)
T ss_pred ---------hhh------------------------hhHHHHHHHHHH---cCcEEEECCCCCCCChHHHHHHHHhcCCC
Confidence 000 001234444444 378999877775 5689999999999999
Q ss_pred EEEEEcCCcccCccchHHHHHHHHhcCCc-ee-eeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCC
Q psy1765 206 VLVFLDSHIEVNTHWLEPLLVPIAERTNT-VT-VPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFI 283 (867)
Q Consensus 206 ~llfLDaD~~v~p~wLe~Ll~~l~~~~~~-vv-~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~ 283 (867)
||+++|+|+.++|++|+.++..+.+++.. +| +|.. ..+.+.++................+. . ...+ .
T Consensus 231 ~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~-f~~p~~~~~nl~~~~~~~~e~~~f~~-~-i~~g-----~--- 299 (713)
T TIGR03030 231 LILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHF-FVSPDPIERNLGTFRRMPNENELFYG-L-IQDG-----N--- 299 (713)
T ss_pred EEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCee-ccCCCHHhhhhHHHHHhhhHHHHHHH-H-HHHH-----H---
Confidence 99999999999999999999999877653 33 2322 12222111100000000000000000 0 0000 0
Q ss_pred CcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEE
Q psy1765 284 KPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHV 345 (867)
Q Consensus 284 ~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~ 345 (867)
.......++|+++++||++|+++||||++.. .||+|+++|+..+|+++.++|.+.+.+.
T Consensus 300 ~~~~~~~~~Gs~~~iRR~al~~iGGf~~~~v---tED~~l~~rL~~~G~~~~y~~~~~~~g~ 358 (713)
T TIGR03030 300 DFWNAAFFCGSAAVLRREALDEIGGIAGETV---TEDAETALKLHRRGWNSAYLDRPLIAGL 358 (713)
T ss_pred hhhCCeeecCceeEEEHHHHHHcCCCCCCCc---CcHHHHHHHHHHcCCeEEEecccccccc
Confidence 0112345678899999999999999998653 7999999999999999999998877653
No 42
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=99.84 E-value=2.8e-20 Score=183.24 Aligned_cols=169 Identities=25% Similarity=0.368 Sum_probs=119.8
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhh
Q psy1765 55 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFG 134 (867)
Q Consensus 55 SVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g 134 (867)
|||||+||++. .|.+||+||++|+.+.+ |||||||+|+|++
T Consensus 1 Svvip~~n~~~-~l~~~l~sl~~q~~~~~--eiivvdd~s~d~~------------------------------------ 41 (169)
T PF00535_consen 1 SVVIPTYNEAE-YLERTLESLLKQTDPDF--EIIVVDDGSTDET------------------------------------ 41 (169)
T ss_dssp EEEEEESS-TT-THHHHHHHHHHHSGCEE--EEEEEECS-SSSH------------------------------------
T ss_pred CEEEEeeCCHH-HHHHHHHHHhhccCCCE--EEEEecccccccc------------------------------------
Confidence 89999999865 99999999999988887 9999999997762
Q ss_pred hhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCc
Q psy1765 135 AKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI 214 (867)
Q Consensus 135 ~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~ 214 (867)
.+.+.++.+ ...++++++.++|.|++.++|.|+++|+++|++|+|+|+
T Consensus 42 ------------------------------~~~~~~~~~--~~~~i~~i~~~~n~g~~~~~n~~~~~a~~~~i~~ld~D~ 89 (169)
T PF00535_consen 42 ------------------------------EEILEEYAE--SDPNIRYIRNPENLGFSAARNRGIKHAKGEYILFLDDDD 89 (169)
T ss_dssp ------------------------------HHHHHHHHC--CSTTEEEEEHCCCSHHHHHHHHHHHH--SSEEEEEETTE
T ss_pred ------------------------------ccccccccc--cccccccccccccccccccccccccccceeEEEEeCCCc
Confidence 345555554 237999999999999999999999999999999999999
Q ss_pred ccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccc
Q psy1765 215 EVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGG 294 (867)
Q Consensus 215 ~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~ 294 (867)
++.++||+.+++.+.+.+..++.+.................. .. +....... ............+++
T Consensus 90 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~----------~~~~~~~~~~~~~~~ 156 (169)
T PF00535_consen 90 IISPDWLEELVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRF--SF-WNRFERKI----------FNNIRFWKISFFIGS 156 (169)
T ss_dssp EE-TTHHHHHHHHHHHCTTEEEEEEEEEEECTTETEECCCTS--EE-EECCHCHH----------HHTTHSTTSSEESSS
T ss_pred eEcHHHHHHHHHHHHhCCCcEEEEEEEEecCCccccccccch--hh-hhhhhhHH----------HHhhhcCCccccccc
Confidence 999999999999999977766655554443332222111000 00 00000000 001112345677889
Q ss_pred eEeEeHHHHHHhC
Q psy1765 295 LFAIDRQYFDSLG 307 (867)
Q Consensus 295 ~~airR~~f~~vG 307 (867)
++++||++|+++|
T Consensus 157 ~~~~rr~~~~~~~ 169 (169)
T PF00535_consen 157 CALFRRSVFEEIG 169 (169)
T ss_dssp CEEEEEHHHHHCH
T ss_pred EEEEEHHHHHhhC
Confidence 9999999999986
No 43
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.83 E-value=5.3e-20 Score=212.39 Aligned_cols=235 Identities=23% Similarity=0.243 Sum_probs=165.0
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHH
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRA 130 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a 130 (867)
+|+||||||+|||+...+.+++.|+++|+||.+ |||||||+|+|++
T Consensus 53 ~p~vsviiP~ynE~~~~~~~~l~s~~~~dyp~~--evivv~d~~~d~~-------------------------------- 98 (439)
T COG1215 53 LPKVSVIIPAYNEEPEVLEETLESLLSQDYPRY--EVIVVDDGSTDET-------------------------------- 98 (439)
T ss_pred CCceEEEEecCCCchhhHHHHHHHHHhCCCCCc--eEEEECCCCChhH--------------------------------
Confidence 599999999999998899999999999999998 9999999999882
Q ss_pred hhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEc-CCCcCchhHHhHhhhhcCCCEEEE
Q psy1765 131 RMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRT-SKREGLIRARMFGAKYATGKVLVF 209 (867)
Q Consensus 131 ~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~-~~n~G~a~ArN~G~~~A~Gd~llf 209 (867)
.+.+.+...+. .++++++.. .++.|.++|.|.|+..++||+|++
T Consensus 99 ----------------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~gK~~al~~~l~~~~~d~V~~ 143 (439)
T COG1215 99 ----------------------------------YEILEELGAEY-GPNFRVIYPEKKNGGKAGALNNGLKRAKGDVVVI 143 (439)
T ss_pred ----------------------------------HHHHHHHHhhc-CcceEEEeccccCccchHHHHHHHhhcCCCEEEE
Confidence 34455555443 146677644 578999999999999999999999
Q ss_pred EcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccc
Q psy1765 210 LDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSP 289 (867)
Q Consensus 210 LDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 289 (867)
+|+|..++|++|..++..+..++.++++..............-.....-.+.....+... ... .--...
T Consensus 144 ~DaD~~~~~d~l~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---------~~~--~~g~~~ 212 (439)
T COG1215 144 LDADTVPEPDALRELVSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLR---------AAS--KGGLIS 212 (439)
T ss_pred EcCCCCCChhHHHHHHhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhh---------hhh--hcCCeE
Confidence 999999999999999999998877634332211111100000000000000000000000 000 001346
Q ss_pred ccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEeccCCCCCCCCCCchhhhhhHHHH
Q psy1765 290 TMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVA 369 (867)
Q Consensus 290 ~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r~~~~y~~~~~~~~~~rN~~R~a 369 (867)
.+.|++.++||++++++||+++... .||.++++|+...|+++.++|++.+.-. .|.....+.+.+.|.+
T Consensus 213 ~~~G~~~~~rr~aL~~~g~~~~~~i---~ED~~lt~~l~~~G~~~~~~~~~~~~~~--------~p~t~~~~~~Qr~RW~ 281 (439)
T COG1215 213 FLSGSSSAFRRSALEEVGGWLEDTI---TEDADLTLRLHLRGYRVVYVPEAIVWTE--------APETLKELWRQRLRWA 281 (439)
T ss_pred EEcceeeeEEHHHHHHhCCCCCCce---eccHHHHHHHHHCCCeEEEeecceEeee--------CcccHHHHHHHHHHHH
Confidence 7889999999999999999999775 7999999999999999999998844322 2334445566666666
Q ss_pred HhcHHHH
Q psy1765 370 HVWMDEY 376 (867)
Q Consensus 370 ~~w~d~~ 376 (867)
.-.+..+
T Consensus 282 ~g~~~~~ 288 (439)
T COG1215 282 RGGLQVL 288 (439)
T ss_pred cccceee
Confidence 5554433
No 44
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=99.83 E-value=3.4e-20 Score=192.39 Aligned_cols=197 Identities=21% Similarity=0.200 Sum_probs=134.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCc----cccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTG----QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRAR 131 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~----~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~ 131 (867)
||||+|||+. .|.+||+||++|++ +++ |||||||||+|++
T Consensus 1 iiip~yN~~~-~l~~~l~~l~~~~~~~~~~~~--eiivvdd~S~D~t--------------------------------- 44 (211)
T cd04188 1 VVIPAYNEEK-RLPPTLEEAVEYLEERPSFSY--EIIVVDDGSKDGT--------------------------------- 44 (211)
T ss_pred CEEcccChHH-HHHHHHHHHHHHHhccCCCCE--EEEEEeCCCCCch---------------------------------
Confidence 7999999765 99999999999865 466 9999999998873
Q ss_pred hhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEc
Q psy1765 132 MFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLD 211 (867)
Q Consensus 132 ~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLD 211 (867)
.+.+.++.+.. +..+++++.++|.|+++|+|.|++.|+||||+|+|
T Consensus 45 ---------------------------------~~~~~~~~~~~-~~~i~~i~~~~n~G~~~a~~~g~~~a~gd~i~~ld 90 (211)
T cd04188 45 ---------------------------------AEVARKLARKN-PALIRVLTLPKNRGKGGAVRAGMLAARGDYILFAD 90 (211)
T ss_pred ---------------------------------HHHHHHHHHhC-CCcEEEEEcccCCCcHHHHHHHHHHhcCCEEEEEe
Confidence 34455555544 12369999999999999999999999999999999
Q ss_pred CCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccccc
Q psy1765 212 SHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTM 291 (867)
Q Consensus 212 aD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~ 291 (867)
+|..++|++++.+++.+..++..+|.+.......+..... ...+........+....+. . .++ .+..
T Consensus 91 ~D~~~~~~~l~~l~~~~~~~~~~~v~g~r~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~---------~~~-~d~~ 157 (211)
T cd04188 91 ADLATPFEELEKLEEALKTSGYDIAIGSRAHLASAAVVKR--SWLRNLLGRGFNFLVRLLL-G---------LGI-KDTQ 157 (211)
T ss_pred CCCCCCHHHHHHHHHHHhccCCcEEEEEeeccCCcccccc--cHHHHHHHHHHHHHHHHHc-C---------CCC-cccc
Confidence 9999999999999999776665555543322111110000 0000000000000000000 0 000 1122
Q ss_pred ccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEc
Q psy1765 292 AGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIP 338 (867)
Q Consensus 292 ~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P 338 (867)
.+..+++|+++.++++..+ ...| .+|+||++|+.+.|+++..+|
T Consensus 158 -~g~~~~~r~~~~~~~~~~~-~~~~-~~d~el~~r~~~~g~~~~~vp 201 (211)
T cd04188 158 -CGFKLFTRDAARRLFPRLH-LERW-AFDVELLVLARRLGYPIEEVP 201 (211)
T ss_pred -cCceeEcHHHHHHHHhhhh-ccce-EeeHHHHHHHHHcCCeEEEcC
Confidence 3567899999999976432 2334 579999999999999999999
No 45
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=99.82 E-value=2.3e-20 Score=188.65 Aligned_cols=181 Identities=23% Similarity=0.202 Sum_probs=128.3
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCc--cccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTG--QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMF 133 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~--~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~ 133 (867)
||||+||++. .|.+||+|+.+|++ ..+ |||||||+|+|++
T Consensus 1 iii~~~n~~~-~l~~~l~sl~~~~~~~~~~--eiivvd~~s~d~~----------------------------------- 42 (185)
T cd04179 1 VVIPAYNEEE-NIPELVERLLAVLEEGYDY--EIIVVDDGSTDGT----------------------------------- 42 (185)
T ss_pred CeecccChHh-hHHHHHHHHHHHhccCCCE--EEEEEcCCCCCCh-----------------------------------
Confidence 7999999765 99999999999987 455 9999999998772
Q ss_pred hhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCC
Q psy1765 134 GAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSH 213 (867)
Q Consensus 134 g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD 213 (867)
.+.+..+.++. +.++++..++|.|+++|+|.|++.|+||||+|+|+|
T Consensus 43 -------------------------------~~~~~~~~~~~--~~~~~~~~~~n~G~~~a~n~g~~~a~gd~i~~lD~D 89 (185)
T cd04179 43 -------------------------------AEIARELAARV--PRVRVIRLSRNFGKGAAVRAGFKAARGDIVVTMDAD 89 (185)
T ss_pred -------------------------------HHHHHHHHHhC--CCeEEEEccCCCCccHHHHHHHHHhcCCEEEEEeCC
Confidence 34555665555 678999999999999999999999999999999999
Q ss_pred cccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccccccccc
Q psy1765 214 IEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAG 293 (867)
Q Consensus 214 ~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G 293 (867)
+.+.|+||+.++..+...+..+|++.....++. ...........+...+..... .......+.|
T Consensus 90 ~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~ 153 (185)
T cd04179 90 LQHPPEDIPKLLEKLLEGGADVVIGSRFVRGGG----AGMPLLRRLGSRLFNFLIRLL------------LGVRISDTQS 153 (185)
T ss_pred CCCCHHHHHHHHHHHhccCCcEEEEEeecCCCc----ccchHHHHHHHHHHHHHHHHH------------cCCCCcCCCC
Confidence 999999999999996666555554433222221 000000000000000000000 1123456778
Q ss_pred ceEeEeHHHHHHh--CCCCCCCCCCcccchHHHHHH
Q psy1765 294 GLFAIDRQYFDSL--GQYDAGLEIWGGENLELSFRI 327 (867)
Q Consensus 294 ~~~airR~~f~~v--GgfDe~~~~~G~ED~Dls~Rl 327 (867)
++++++|++|+++ |++++.| .+|+|+++|+
T Consensus 154 ~~~~~~r~~~~~i~~~~~~~~~----~~~~~~~~~~ 185 (185)
T cd04179 154 GFRLFRREVLEALLSLLESNGF----EFGLELLVGA 185 (185)
T ss_pred ceeeeHHHHHHHHHhhccccCc----ceeeEeeecC
Confidence 8999999999999 7888876 4677887763
No 46
>cd04190 Chitin_synth_C C-terminal domain of Chitin Synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin. Chitin synthase, also called UDP-N-acetyl-D-glucosamine:chitin 4-beta-N-acetylglucosaminyltransferase, catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of GlcNAc residues formed by covalent beta-1,4 linkages. Chitin is an important component of the cell wall of fungi and bacteria and it is synthesized on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases. Studies with fungi have revealed that most of them contain more than one chitin synthase gene. At least five subclasses of chitin synthases have been identified.
Probab=99.82 E-value=5e-20 Score=196.04 Aligned_cols=140 Identities=9% Similarity=0.016 Sum_probs=92.6
Q ss_pred hHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCC-Cceecccccccccccccccccccc
Q psy1765 193 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINAD-TFQYTSSALVRGGFNWGLHFKWEN 270 (867)
Q Consensus 193 ~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~-~~~~~~~~~~~g~f~~~l~~~~~~ 270 (867)
.+.|.|+..|+||||+++|+|+.++|+||+.+++.|..++. ++|++.+...+.. ++... ...+.+... .+
T Consensus 63 ~~~~~~~~~a~~e~i~~~DaD~~~~~~~l~~l~~~~~~~p~vg~v~g~~~~~~~~~~~~~~-----~q~~ey~~~-~~-- 134 (244)
T cd04190 63 NYFCRVLFPDDPEFILLVDADTKFDPDSIVQLYKAMDKDPEIGGVCGEIHPMGKKQGPLVM-----YQVFEYAIS-HW-- 134 (244)
T ss_pred HHHHHHhhcCCCCEEEEECCCCcCCHhHHHHHHHHHHhCCCEEEEEeeeEEcCCcchhHHH-----hHheehhhh-hh--
Confidence 46788888999999999999999999999999999977665 5566655443321 11000 000000000 00
Q ss_pred CCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCC-----------------CCcccchHHHHHHHHcCCe
Q psy1765 271 LPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLE-----------------IWGGENLELSFRIWMCGGS 333 (867)
Q Consensus 271 ~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~-----------------~~G~ED~Dls~Rl~~~G~~ 333 (867)
..... ....-.+..+.|+++++|+++++++|++...+. ..-+||.+|++|+...|++
T Consensus 135 -----~~~~~-~s~~g~~~~~~G~~~~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ED~~l~~~l~~~G~~ 208 (244)
T cd04190 135 -----LDKAF-ESVFGFVTCLPGCFSMYRIEALKGDNGGKGPLLDYAYLTNTVDSLHKKNNLDLGEDRILCTLLLKAGPK 208 (244)
T ss_pred -----hcccH-HHcCCceEECCCceEEEEehhhcCCccccccchhhccccCcccchHHHHHHhHhcccceeHHHhccCCc
Confidence 00000 000112456789999999999999988654210 0127999999999999999
Q ss_pred EEE--EcccEEEEEe
Q psy1765 334 LAM--IPCSRIGHVF 346 (867)
Q Consensus 334 i~~--~P~s~V~H~~ 346 (867)
+.+ .|.+.++...
T Consensus 209 ~~~~~~~~a~~~~~~ 223 (244)
T cd04190 209 RKYLYVPGAVAETDV 223 (244)
T ss_pred cEEEEecccEEEEEC
Confidence 999 9999887643
No 47
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=99.81 E-value=8.4e-20 Score=180.43 Aligned_cols=178 Identities=21% Similarity=0.238 Sum_probs=124.2
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
||||+||++. .|.+||+||++|+++.+ |||||||+|+|.+
T Consensus 1 Viip~~n~~~-~l~~~l~sl~~q~~~~~--~iivvdd~s~d~t------------------------------------- 40 (180)
T cd06423 1 IIVPAYNEEA-VIERTIESLLALDYPKL--EVIVVDDGSTDDT------------------------------------- 40 (180)
T ss_pred CeecccChHH-HHHHHHHHHHhCCCCce--EEEEEeCCCccch-------------------------------------
Confidence 7999999874 99999999999999888 9999999999873
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcc
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIE 215 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~ 215 (867)
.+.+.++.... ...+.++..+++.|++.|+|.|++.++++||+|+|+|+.
T Consensus 41 -----------------------------~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~n~~~~~~~~~~i~~~D~D~~ 90 (180)
T cd06423 41 -----------------------------LEILEELAALY-IRRVLVVRDKENGGKAGALNAGLRHAKGDIVVVLDADTI 90 (180)
T ss_pred -----------------------------HHHHHHHhccc-cceEEEEEecccCCchHHHHHHHHhcCCCEEEEECCCCC
Confidence 22333333322 245778888889999999999999999999999999999
Q ss_pred cCccchHHHHHHHHhcCC-ceeeeEEeeecCCC-ceeccccccccccccccccccccCCcCcCCCCCCCCCccccccccc
Q psy1765 216 VNTHWLEPLLVPIAERTN-TVTVPIIDIINADT-FQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAG 293 (867)
Q Consensus 216 v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~-~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G 293 (867)
+.++||+.++..+.+++. .++++......... +... +.. ..+..... .. ............+.|
T Consensus 91 ~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~----~~-~~~~~~~~~~~~~~g 156 (180)
T cd06423 91 LEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTR--------LQA-IEYLSIFR----LG-RRAQSALGGVLVLSG 156 (180)
T ss_pred cChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceec--------cch-heecceee----ee-eehhheecceeecCc
Confidence 999999999777766554 55555554433221 1000 000 00000000 00 000001123456788
Q ss_pred ceEeEeHHHHHHhCCCCCCCCCCcccc
Q psy1765 294 GLFAIDRQYFDSLGQYDAGLEIWGGEN 320 (867)
Q Consensus 294 ~~~airR~~f~~vGgfDe~~~~~G~ED 320 (867)
++++++|++|+++||||+.+. +||
T Consensus 157 ~~~~~~~~~~~~~ggf~~~~~---~eD 180 (180)
T cd06423 157 AFGAFRREALREVGGWDEDTL---TED 180 (180)
T ss_pred hHHHHHHHHHHHhCCccccCc---CCC
Confidence 999999999999999999864 576
No 48
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=99.79 E-value=5.6e-19 Score=178.55 Aligned_cols=176 Identities=19% Similarity=0.159 Sum_probs=122.7
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcC---ccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRT---GQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARM 132 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt---~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~ 132 (867)
||||+||++. .|.++|+||..+. +..+ |||||||+|+|++
T Consensus 1 viIp~~n~~~-~l~~~l~sl~~~~~~~~~~~--eiivvdd~s~d~t---------------------------------- 43 (181)
T cd04187 1 IVVPVYNEEE-NLPELYERLKAVLESLGYDY--EIIFVDDGSTDRT---------------------------------- 43 (181)
T ss_pred CEEeecCchh-hHHHHHHHHHHHHHhcCCCe--EEEEEeCCCCccH----------------------------------
Confidence 7999999875 8888888887654 4556 9999999998872
Q ss_pred hhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcC
Q psy1765 133 FGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 212 (867)
Q Consensus 133 ~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDa 212 (867)
.+.+..+.++. ++++++...+|.|.++|+|.|++.|+|||++|+|+
T Consensus 44 --------------------------------~~~~~~~~~~~--~~i~~i~~~~n~G~~~a~n~g~~~a~~d~i~~~D~ 89 (181)
T cd04187 44 --------------------------------LEILRELAARD--PRVKVIRLSRNFGQQAALLAGLDHARGDAVITMDA 89 (181)
T ss_pred --------------------------------HHHHHHHHhhC--CCEEEEEecCCCCcHHHHHHHHHhcCCCEEEEEeC
Confidence 33445555444 68999999999999999999999999999999999
Q ss_pred CcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccc
Q psy1765 213 HIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMA 292 (867)
Q Consensus 213 D~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 292 (867)
|+.++++||+.+++.+..+ ..+|.+.........+. ....+......... .....+...
T Consensus 90 D~~~~~~~l~~l~~~~~~~-~~~v~g~~~~~~~~~~~--------~~~~~~~~~~~~~~------------~~~~~~~~~ 148 (181)
T cd04187 90 DLQDPPELIPEMLAKWEEG-YDVVYGVRKNRKESWLK--------RLTSKLFYRLINKL------------SGVDIPDNG 148 (181)
T ss_pred CCCCCHHHHHHHHHHHhCC-CcEEEEEecCCcchHHH--------HHHHHHHHHHHHHH------------cCCCCCCCC
Confidence 9999999999999996544 44554443221110000 00000000000000 011334566
Q ss_pred cceEeEeHHHHHHhCCCCCCCCCCcccchHHHH
Q psy1765 293 GGLFAIDRQYFDSLGQYDAGLEIWGGENLELSF 325 (867)
Q Consensus 293 G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~ 325 (867)
+++++++|++|+++|+|||.+.. ..+.++.+
T Consensus 149 ~~~~~~~r~~~~~i~~~d~~~~~--~~~~~~~~ 179 (181)
T cd04187 149 GDFRLMDRKVVDALLLLPERHRF--LRGLIAWV 179 (181)
T ss_pred CCEEEEcHHHHHHHHhcCCCCcc--HHHHHHHh
Confidence 88899999999999999998864 56655544
No 49
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=99.76 E-value=1.2e-18 Score=176.79 Aligned_cols=177 Identities=20% Similarity=0.180 Sum_probs=113.8
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
||||+|||+. .|.+||+||++|++|....|||||||+|+|.+
T Consensus 1 VvIp~~ne~~-~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t------------------------------------- 42 (183)
T cd06438 1 ILIPAHNEEA-VIGNTVRSLKAQDYPRELYRIFVVADNCTDDT------------------------------------- 42 (183)
T ss_pred CEEeccchHH-HHHHHHHHHHhcCCCCcccEEEEEeCCCCchH-------------------------------------
Confidence 7999999875 99999999999998532239999999998872
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc-----CCCEEEEE
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-----TGKVLVFL 210 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A-----~Gd~llfL 210 (867)
.+.+. .. ...+.+...+.+.|.+.|+|.|+++| ++|+|+|+
T Consensus 43 -----------------------------~~~~~----~~-~~~~~~~~~~~~~gk~~aln~g~~~a~~~~~~~d~v~~~ 88 (183)
T cd06438 43 -----------------------------AQVAR----AA-GATVLERHDPERRGKGYALDFGFRHLLNLADDPDAVVVF 88 (183)
T ss_pred -----------------------------HHHHH----Hc-CCeEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCEEEEE
Confidence 11121 11 12344444566889999999999876 49999999
Q ss_pred cCCcccCccchHHHHHHHHhcCCceeeeEEeeecCC-CceeccccccccccccccccccccCCcCcCCCCCCCCCccccc
Q psy1765 211 DSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINAD-TFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSP 289 (867)
Q Consensus 211 DaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~-~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~ 289 (867)
|+|+.++|+||..+++.+..+.. +|.+.....+.+ .+..... .+.+.+............ -...
T Consensus 89 DaD~~~~p~~l~~l~~~~~~~~~-~v~g~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---------~~~~ 153 (183)
T cd06438 89 DADNLVDPNALEELNARFAAGAR-VVQAYYNSKNPDDSWITRLY-----AFAFLVFNRLRPLGRSNL---------GLSC 153 (183)
T ss_pred cCCCCCChhHHHHHHHHHhhCCC-eeEEEEeeeCCccCHHHHHH-----HHHHHHHHHHHHHHHHHc---------CCCe
Confidence 99999999999999999986554 333322222111 1100000 000000000000000000 0123
Q ss_pred ccccceEeEeHHHHHHhCCCCCCCCCCcccchHH
Q psy1765 290 TMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLEL 323 (867)
Q Consensus 290 ~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dl 323 (867)
.+.|+++++||++|++ |||++.-. .||+||
T Consensus 154 ~~~G~~~~~rr~~l~~-~g~~~~~l---~ED~~~ 183 (183)
T cd06438 154 QLGGTGMCFPWAVLRQ-APWAAHSL---TEDLEF 183 (183)
T ss_pred eecCchhhhHHHHHHh-CCCCCCCc---ccccCC
Confidence 4568889999999999 88987543 699875
No 50
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=99.76 E-value=9.9e-18 Score=178.76 Aligned_cols=211 Identities=12% Similarity=0.092 Sum_probs=134.6
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHh----cCc-cccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 54 TSVIICFYNEHPATLYRSVQTLLS----RTG-QSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 54 vSVIIp~yNe~~~~l~~~l~Svl~----qt~-~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
|||+||+|||+...|.++|.|+.+ |.| +.+ ||+|+||++++... +
T Consensus 1 ~SIliP~~ne~~~~l~~~l~~~~~~~~~~~~~~~~--eI~vldD~~d~~~~----~------------------------ 50 (254)
T cd04191 1 TAIVMPVYNEDPARVFAGLRAMYESLAKTGLADHF--DFFILSDTRDPDIW----L------------------------ 50 (254)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHhcCCcCce--EEEEECCCCChHHH----H------------------------
Confidence 699999999999779999998875 665 777 99999998865510 0
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcC-CCCEEEEEcCCCcCchhH-HhHhhhh--cCC
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLN-NGRVHLYRTSKREGLIRA-RMFGAKY--ATG 204 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~-~~~vrii~~~~n~G~a~A-rN~G~~~--A~G 204 (867)
+. .+.+.+..+++. ..+|++++.++|.|..++ .|.++.. +++
T Consensus 51 -~~---------------------------------~~~~~~l~~~~~~~~~v~~~~r~~~~g~Kag~l~~~~~~~~~~~ 96 (254)
T cd04191 51 -AE---------------------------------EAAWLDLCEELGAQGRIYYRRRRENTGRKAGNIADFCRRWGSRY 96 (254)
T ss_pred -HH---------------------------------HHHHHHHHHHhCCCCcEEEEEcCCCCCccHHHHHHHHHHhCCCC
Confidence 00 111222222221 368999999989888544 4444444 688
Q ss_pred CEEEEEcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCC
Q psy1765 205 KVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFI 283 (867)
Q Consensus 205 d~llfLDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~ 283 (867)
|||+++|+|..++|++|..++..+..++. ++|.......+.+++...-.......|...+ ......
T Consensus 97 ~~i~~~DaD~~~~p~~l~~~v~~~~~~~~vg~vq~~~~~~n~~~~~~~~~~~~~~~~~~~~------~~~~~~------- 163 (254)
T cd04191 97 DYMVVLDADSLMSGDTIVRLVRRMEANPRAGIIQTAPKLIGAETLFARLQQFANRLYGPVF------GRGLAA------- 163 (254)
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEeCCceeECCCCHHHHHHHHHHHHHHHHH------HHHHHH-------
Confidence 99999999999999999999999987765 4443222233333221100000000000000 000000
Q ss_pred CcccccccccceEeEeHHHHHHhCCCCC--CCCCC----cccchHHHHHHHHcCCeEEEEcccE
Q psy1765 284 KPILSPTMAGGLFAIDRQYFDSLGQYDA--GLEIW----GGENLELSFRIWMCGGSLAMIPCSR 341 (867)
Q Consensus 284 ~p~~~~~~~G~~~airR~~f~~vGgfDe--~~~~~----G~ED~Dls~Rl~~~G~~i~~~P~s~ 341 (867)
.........|.++++||+.|+++|++++ ++..| =.||+++++|+..+||++++.|.+.
T Consensus 164 ~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ri~~~~~~~ 227 (254)
T cd04191 164 WQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGWEVRLAPDLE 227 (254)
T ss_pred hcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCCEEEEccCCc
Confidence 0001235668999999999999766543 22222 1699999999999999999999764
No 51
>KOG3737|consensus
Probab=99.75 E-value=6.5e-18 Score=178.33 Aligned_cols=183 Identities=24% Similarity=0.516 Sum_probs=120.2
Q ss_pred chhhhhhHHHHHhcHHHHHHHHhhcCCCcCCCCCCCchhHHHHHHHcCCcccccccccccCCCc----CCCchHHHHhhh
Q psy1765 359 DPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMI----LPSDDEERLKKK 434 (867)
Q Consensus 359 ~~~~rN~~R~a~~w~d~~~~~~y~~~p~~~~~~~gdi~~r~~lr~~l~ck~F~Wyl~~v~p~~~----~~~~~~~~~~~~ 434 (867)
..+..|+.|+.+.|+|+|+++||.+.|++..+++||||++++||++|+||||+||+++|+-+.. ++..+. .
T Consensus 406 p~i~iNy~RVvetW~Ddyk~YfytreP~a~~l~~GDISeqlalr~~lnCkSFkWfMe~iAYDv~~~yP~lP~N~-----~ 480 (603)
T KOG3737|consen 406 PPILINYVRVVETWWDDYKDYFYTREPEAQALPYGDISEQLALREDLNCKSFKWFMEEIAYDVTSHYPLLPKNV-----D 480 (603)
T ss_pred CceEeehhhHHHHHHHhhhhheeecChhhccCCcccHHHHHHhHhhcCCchhHHHHHHHHHHHHhcCCCCCCCC-----c
Confidence 3467899999999999999999999999999999999999999999999999999999942211 111111 2
Q ss_pred hccccCCCCCCCccccccccCceeEEEeecchhhhhhhccCcccCCCCccCCchhHhhhhhccccccccccccccCcccc
Q psy1765 435 WAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMIL 514 (867)
Q Consensus 435 ~~~~~~~~~~p~~s~~~~~~N~~R~aeVWmDeyk~~~y~~~p~~~~~~~gdis~r~~LR~~l~CksF~Wyl~nv~p~~~~ 514 (867)
|+.+...++. -|+|..-. .|. | |.=.-
T Consensus 481 WGE~R~~at~-----------------~ClDsMG~-----~p~------g-------------------------~mglt 507 (603)
T KOG3737|consen 481 WGEIRGFATA-----------------YCLDSMGK-----TPG------G-------------------------FMGLT 507 (603)
T ss_pred chhccCcccc-----------------hhHHhcCC-----CCC------C-------------------------ccccc
Confidence 3333322221 12222111 000 0 00001
Q ss_pred CCCcHHHHhhhhhcccCCCcccccccccccccceeeeecCCCceecccCCCCCCCcEEEEecCCCCCCceeeecCCCc-e
Q psy1765 515 PSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSE-L 593 (867)
Q Consensus 515 p~~~~~~~~~~~~~~~~~~~~~~~g~~rn~~~~g~ir~~~~~~CLD~~~~~~~g~~v~l~~C~~~~~~Q~w~~t~~~~-i 593 (867)
||+.. ..+| .+ |- ..-|++ .+...||.+ .|..+.+-.|.-..-+-.|.|..+.. +
T Consensus 508 ~CHg~------------GgNQ-L~---Rl-N~agQl--~qge~CltA-----dg~~i~~~hC~lgtv~g~WqY~~~tk~~ 563 (603)
T KOG3737|consen 508 PCHGM------------GGNQ-LF---RL-NEAGQL--MQGEQCLTA-----DGSKIMITHCNLGTVKGEWQYFKNTKRF 563 (603)
T ss_pred cccCC------------CCce-EE---Ee-ccccch--hccceeeec-----CCceEEEEEeecccccCceehhhcchhe
Confidence 44431 0011 10 10 111222 246779974 57889999999877788999987553 3
Q ss_pred E-EeeceeeecC--CCccEEEeCCCCCCCccee
Q psy1765 594 V-LAELLCLDAG--ATKPKLTKCHEMGGSQEYW 623 (867)
Q Consensus 594 ~-~~~~~CLd~~--g~~v~l~~C~~~~~~Q~~w 623 (867)
. ..+++|+|.. +..+.+..|+.....|+||
T Consensus 564 ~H~~~~kC~~~se~~~qv~l~~Cd~~~~~Qkw~ 596 (603)
T KOG3737|consen 564 THIPSGKCLDRSEVLHQVFLSNCDSSKTTQKWE 596 (603)
T ss_pred eeccccccccccchhheeeecccCCCchhheee
Confidence 3 3568999988 4568999999999999875
No 52
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=99.75 E-value=2.3e-17 Score=183.09 Aligned_cols=207 Identities=17% Similarity=0.176 Sum_probs=136.0
Q ss_pred CCCCCcEEEEEEeCCCChHHHHHHHHHHHhcCc-------c-ccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEE
Q psy1765 48 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTG-------Q-SLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLY 119 (867)
Q Consensus 48 ~~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~-------~-~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~ 119 (867)
....|.+|||||+|||+. .|.++|+++.++.. . ++ |||||||||+|++
T Consensus 66 ~~~~~~isVVIP~yNe~~-~i~~~L~~l~~~~~~~~~~~~~~~~--EIIVVDDgStD~T--------------------- 121 (333)
T PTZ00260 66 KDSDVDLSIVIPAYNEED-RLPKMLKETIKYLESRSRKDPKFKY--EIIIVNDGSKDKT--------------------- 121 (333)
T ss_pred CCCCeEEEEEEeeCCCHH-HHHHHHHHHHHHHHhhhccCCCCCE--EEEEEeCCCCCch---------------------
Confidence 345689999999999876 89999999987532 1 34 7888888877763
Q ss_pred EeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhc--CCCCEEEEEcCCCcCchhHHhH
Q psy1765 120 RTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGL--NNGRVHLYRTSKREGLIRARMF 197 (867)
Q Consensus 120 ~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~--~~~~vrii~~~~n~G~a~ArN~ 197 (867)
.+.+.++.+.. ...++++++.++|.|.+.|+|.
T Consensus 122 ---------------------------------------------~~i~~~~~~~~~~~~~~i~vi~~~~N~G~~~A~~~ 156 (333)
T PTZ00260 122 ---------------------------------------------LKVAKDFWRQNINPNIDIRLLSLLRNKGKGGAVRI 156 (333)
T ss_pred ---------------------------------------------HHHHHHHHHhcCCCCCcEEEEEcCCCCChHHHHHH
Confidence 44455555432 1246999999999999999999
Q ss_pred hhhhcCCCEEEEEcCCcccCccchHHHHHHHHh---cCCceeeeEEeeecCCCceeccccccccccccccccccccCCcC
Q psy1765 198 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE---RTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKG 274 (867)
Q Consensus 198 G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~---~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~ 274 (867)
|+++|+||+|+++|+|...+++.++.+++.+.+ +..++|++............ .....+....+..++-...+..
T Consensus 157 Gi~~a~gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~GsR~~~~~~~~~~-~~~~~r~~~~~~~~~l~~~~~~- 234 (333)
T PTZ00260 157 GMLASRGKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGSRNHLVDSDVVA-KRKWYRNILMYGFHFIVNTICG- 234 (333)
T ss_pred HHHHccCCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEeeccccccCcccc-cCcHHHHHHHHHHHHHHHHHcC-
Confidence 999999999999999999999999999999875 44456655432211110000 0000000000000000000000
Q ss_pred cCCCCCCCCCcccccccccceEeEeHHHHHHhCCCC-CCCCCCcccchHHHHHHHHcCCeEEEEcc
Q psy1765 275 TLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYD-AGLEIWGGENLELSFRIWMCGGSLAMIPC 339 (867)
Q Consensus 275 ~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfD-e~~~~~G~ED~Dls~Rl~~~G~~i~~~P~ 339 (867)
....-...++-+++|++++++ |. .....| .-|+|+..++...|.+|..+|-
T Consensus 235 -----------~~i~D~~~Gfk~~~r~~~~~i--~~~~~~~~~-~fd~Ell~~a~~~g~~I~EvPv 286 (333)
T PTZ00260 235 -----------TNLKDTQCGFKLFTRETARII--FPSLHLERW-AFDIEIVMIAQKLNLPIAEVPV 286 (333)
T ss_pred -----------CCcccCCCCeEEEeHHHHHHH--hhhccccCc-cchHHHHHHHHHcCCCEEEEce
Confidence 011122345778999999987 21 122233 4589999999999999999994
No 53
>PRK14716 bacteriophage N4 adsorption protein B; Provisional
Probab=99.71 E-value=6.8e-17 Score=186.47 Aligned_cols=206 Identities=16% Similarity=0.162 Sum_probs=135.2
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHH-hcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhh
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGL 127 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl-~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 127 (867)
...|.+|||||+|||+. .|.++|+|++ +++|+++ ||||+||+|+|++
T Consensus 63 ~~~p~vaIlIPA~NE~~-vI~~~l~s~L~~ldY~~~--eIiVv~d~ndd~T----------------------------- 110 (504)
T PRK14716 63 VPEKRIAIFVPAWREAD-VIGRMLEHNLATLDYENY--RIFVGTYPNDPAT----------------------------- 110 (504)
T ss_pred CCCCceEEEEeccCchh-HHHHHHHHHHHcCCCCCe--EEEEEECCCChhH-----------------------------
Confidence 44789999999999886 9999999976 4678888 9999999988872
Q ss_pred HHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcC--CCcCchhHHhHhhhhc---
Q psy1765 128 IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTS--KREGLIRARMFGAKYA--- 202 (867)
Q Consensus 128 ~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~--~n~G~a~ArN~G~~~A--- 202 (867)
.+.+++..+++ ++++++..+ ...|++.|.|.|++.+
T Consensus 111 -------------------------------------~~~v~~l~~~~--p~v~~vv~~~~gp~~Ka~aLN~~l~~~~~~ 151 (504)
T PRK14716 111 -------------------------------------LREVDRLAARY--PRVHLVIVPHDGPTSKADCLNWIYQAIFAF 151 (504)
T ss_pred -------------------------------------HHHHHHHHHHC--CCeEEEEeCCCCCCCHHHHHHHHHHHHHHh
Confidence 34455555555 667655443 2346899999998654
Q ss_pred ---CC---CEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceecccccccccccccccc-ccccCCcCc
Q psy1765 203 ---TG---KVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHF-KWENLPKGT 275 (867)
Q Consensus 203 ---~G---d~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~-~~~~~~~~~ 275 (867)
+| |+|+++|+|+.++|++|..+...+. +...+-.|... ++... .....+.+.-.+.. .....+...
T Consensus 152 e~~~G~~~d~vvi~DAD~~v~Pd~Lr~~~~~~~-~~~~VQ~pv~~-~~~~~-----~~~~ag~y~~ef~~~~~~~l~~r~ 224 (504)
T PRK14716 152 ERERGIRFAIIVLHDAEDVIHPLELRLYNYLLP-RHDFVQLPVFS-LPRDW-----GEWVAGTYMDEFAESHLKDLPVRE 224 (504)
T ss_pred hhhcCCCcCEEEEEcCCCCcCccHHHHHHhhcC-CCCEEecceec-cCCch-----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56 9999999999999999987655443 33222233331 11110 00001111000000 000000000
Q ss_pred CCCCCCCCCcccccccccceEeEeHHHHHHh-----CC-CCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEE
Q psy1765 276 LNSSEDFIKPILSPTMAGGLFAIDRQYFDSL-----GQ-YDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIG 343 (867)
Q Consensus 276 ~~~~~~~~~p~~~~~~~G~~~airR~~f~~v-----Gg-fDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~ 343 (867)
.. -......|.++++||++++++ |+ ||++.. .||+|+++|+.++|+++.++|.+..+
T Consensus 225 -----~L---G~~~~~~Gtg~afRR~aLe~l~~~~GG~~fd~~sL---TED~dLglRL~~~G~rv~y~p~ai~~ 287 (504)
T PRK14716 225 -----AL---GGLIPSAGVGTAFSRRALERLAAERGGQPFDSDSL---TEDYDIGLRLKRAGFRQIFVRVRADD 287 (504)
T ss_pred -----hc---CCccccCCeeEEeEHHHHHHHHhhcCCCCCCCCCc---chHHHHHHHHHHCCCEEEEecccccc
Confidence 00 011235688999999999998 43 998753 79999999999999999999987443
No 54
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=99.70 E-value=5.4e-17 Score=177.81 Aligned_cols=204 Identities=19% Similarity=0.212 Sum_probs=124.7
Q ss_pred CCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHH
Q psy1765 50 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIR 129 (867)
Q Consensus 50 ~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 129 (867)
..|+||||||+|||+. .|.++|+||.+|.+.....|||||||||+|++
T Consensus 29 ~~~~vSVVIPayNee~-~I~~~l~sl~~~~~~~~~~EIIVVDDgStD~T------------------------------- 76 (306)
T PRK13915 29 AGRTVSVVLPALNEEE-TVGKVVDSIRPLLMEPLVDELIVIDSGSTDAT------------------------------- 76 (306)
T ss_pred CCCCEEEEEecCCcHH-HHHHHHHHHHHHhccCCCcEEEEEeCCCccHH-------------------------------
Confidence 5689999999999876 99999999999875222239999999999983
Q ss_pred HhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEE-EEcCCCcCchhHHhHhhhhcCCCEEE
Q psy1765 130 ARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHL-YRTSKREGLIRARMFGAKYATGKVLV 208 (867)
Q Consensus 130 a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vri-i~~~~n~G~a~ArN~G~~~A~Gd~ll 208 (867)
.+.+.++.... .....+ ...+.|.|++.|+|.|++.|+||||+
T Consensus 77 -----------------------------------~~ia~~~~~~v-~~~~~~~~~~~~n~Gkg~A~~~g~~~a~gd~vv 120 (306)
T PRK13915 77 -----------------------------------AERAAAAGARV-VSREEILPELPPRPGKGEALWRSLAATTGDIVV 120 (306)
T ss_pred -----------------------------------HHHHHHhcchh-hcchhhhhccccCCCHHHHHHHHHHhcCCCEEE
Confidence 11111111100 011111 22366899999999999999999999
Q ss_pred EEcCCcc-cCccchHHHHHHHHhcC-CceeeeEEeeecCCCceeccccccccccccccccc-cccCCcCcCCCCCCCCCc
Q psy1765 209 FLDSHIE-VNTHWLEPLLVPIAERT-NTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFK-WENLPKGTLNSSEDFIKP 285 (867)
Q Consensus 209 fLDaD~~-v~p~wLe~Ll~~l~~~~-~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~-~~~~~~~~~~~~~~~~~p 285 (867)
|+|+|+. ++|+||+.+++.+..++ .++|.+......... . ......++....+..+ ......... ..
T Consensus 121 ~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g~~~r~~~~~-~--~~~~~~~gr~~~~~~~~l~~~~~~~l-------~~ 190 (306)
T PRK13915 121 FVDADLINFDPMFVPGLLGPLLTDPGVHLVKAFYRRPLRVS-G--GVDATGGGRVTELVARPLLNLLRPEL-------AG 190 (306)
T ss_pred EEeCccccCCHHHHHHHHHHHHhCCCceEEEEEeccccccc-c--ccCcCCCCchHHHHHHHHHHHHHHhh-------hc
Confidence 9999997 89999999999997544 455554321100000 0 0000000000000000 000000000 00
Q ss_pred ccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHH-HcCC-eEEEEc
Q psy1765 286 ILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIW-MCGG-SLAMIP 338 (867)
Q Consensus 286 ~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~-~~G~-~i~~~P 338 (867)
+ ...+ +|.+++||++++++. |+++| +.|+++...+. ..|. ++..++
T Consensus 191 i-~dp~-sG~~a~rr~~l~~l~-~~~~y----g~e~~~l~~~~~~~g~~~i~~V~ 238 (306)
T PRK13915 191 F-VQPL-GGEYAGRRELLESLP-FVPGY----GVEIGLLIDTLDRLGLDAIAQVD 238 (306)
T ss_pred c-cCcc-hHhHHHHHHHHHhCC-CCCCC----eehHHHHHHHHHHhCcCceEEEE
Confidence 1 1223 456899999999985 66653 56899999987 4687 666666
No 55
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=99.70 E-value=5.1e-17 Score=166.26 Aligned_cols=169 Identities=17% Similarity=0.205 Sum_probs=111.0
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
||||+|||+. .|.+||+||++|+ +.+ |||||||+|+|.+
T Consensus 1 ViIp~~Ne~~-~l~~~l~sl~~~~-~~~--eIivvdd~S~D~t------------------------------------- 39 (191)
T cd06436 1 VLVPCLNEEA-VIQRTLASLLRNK-PNF--LVLVIDDASDDDT------------------------------------- 39 (191)
T ss_pred CEEeccccHH-HHHHHHHHHHhCC-CCe--EEEEEECCCCcCH-------------------------------------
Confidence 7999999875 9999999999999 666 9999999999883
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcC---CCcCchhHHhHhhhhcC---------
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTS---KREGLIRARMFGAKYAT--------- 203 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~---~n~G~a~ArN~G~~~A~--------- 203 (867)
.+.+. + ....+++++++.. .+.|++.|+|.|++.++
T Consensus 40 -----------------------------~~~~~-~--~~~~~~v~~i~~~~~~~~~Gk~~aln~g~~~~~~~~~~~g~~ 87 (191)
T cd06436 40 -----------------------------AGIVR-L--AITDSRVHLLRRHLPNARTGKGDALNAAYDQIRQILIEEGAD 87 (191)
T ss_pred -----------------------------HHHHh-h--eecCCcEEEEeccCCcCCCCHHHHHHHHHHHHhhhccccccC
Confidence 12222 1 1112578888753 57899999999999875
Q ss_pred --CCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCC
Q psy1765 204 --GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSED 281 (867)
Q Consensus 204 --Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~ 281 (867)
+|+|+|+|+|+.++|+||+.++..+.....+++.+.+...+...-.+. ......|...+..... .. .
T Consensus 88 ~~~d~v~~~DaD~~~~~~~l~~~~~~~~~~~v~~v~~~~~~~~~~~~~~~----~~~~~e~~~~~~~~~~----~~---~ 156 (191)
T cd06436 88 PERVIIAVIDADGRLDPNALEAVAPYFSDPRVAGTQSRVRMYNRHKNLLT----ILQDLEFFIIIAATQS----LR---A 156 (191)
T ss_pred CCccEEEEECCCCCcCHhHHHHHHHhhcCCceEEEeeeEEEecCCCCHHH----HHHHHHHHHHHHHHHH----HH---H
Confidence 379999999999999999998887764333555544433332210000 0000001100000000 00 0
Q ss_pred CCCcccccccccceEeEeHHHHHHhCCCCC
Q psy1765 282 FIKPILSPTMAGGLFAIDRQYFDSLGQYDA 311 (867)
Q Consensus 282 ~~~p~~~~~~~G~~~airR~~f~~vGgfDe 311 (867)
. .....+.|.++++||++++++|||++
T Consensus 157 ~---~~~~~~~G~~~~~r~~~l~~vgg~~~ 183 (191)
T cd06436 157 L---TGTVGLGGNGQFMRLSALDGLIGEEP 183 (191)
T ss_pred h---cCcEEECCeeEEEeHHHHHHhhcCCC
Confidence 0 01123568889999999999998876
No 56
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=99.69 E-value=9.4e-16 Score=169.78 Aligned_cols=190 Identities=17% Similarity=0.147 Sum_probs=124.8
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHH---hcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhh
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLL---SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGL 127 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl---~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 127 (867)
++++|||||+|||+. .|.++++++. ++.+.++ |||||||||+|++
T Consensus 5 ~~~vSVVIP~yNE~~-~i~~~l~~l~~~~~~~~~~~--EIIvVDDgS~D~T----------------------------- 52 (325)
T PRK10714 5 IKKVSVVIPVYNEQE-SLPELIRRTTAACESLGKEY--EILLIDDGSSDNS----------------------------- 52 (325)
T ss_pred CCeEEEEEcccCchh-hHHHHHHHHHHHHHhCCCCE--EEEEEeCCCCCcH-----------------------------
Confidence 467999999999876 8888888764 4666666 9999999999883
Q ss_pred HHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEE
Q psy1765 128 IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVL 207 (867)
Q Consensus 128 ~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~l 207 (867)
.+.+.++.+.. ..+++++..+.|.|.++|+|.|+++|+||++
T Consensus 53 -------------------------------------~~il~~~~~~~-~~~v~~i~~~~n~G~~~A~~~G~~~A~gd~v 94 (325)
T PRK10714 53 -------------------------------------AEMLVEAAQAP-DSHIVAILLNRNYGQHSAIMAGFSHVTGDLI 94 (325)
T ss_pred -------------------------------------HHHHHHHHhhc-CCcEEEEEeCCCCCHHHHHHHHHHhCCCCEE
Confidence 33344443322 3578877788899999999999999999999
Q ss_pred EEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCccc
Q psy1765 208 VFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPIL 287 (867)
Q Consensus 208 lfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~ 287 (867)
+++|+|...+|++++.+++.+.++ .++|++...... +.+.. ......+.+.+ + .+.. ..
T Consensus 95 v~~DaD~q~~p~~i~~l~~~~~~~-~DvV~~~r~~~~-~~~~r---~~~s~~~~~l~--~--~~~g------------~~ 153 (325)
T PRK10714 95 ITLDADLQNPPEEIPRLVAKADEG-YDVVGTVRQNRQ-DSWFR---KTASKMINRLI--Q--RTTG------------KA 153 (325)
T ss_pred EEECCCCCCCHHHHHHHHHHHHhh-CCEEEEEEcCCC-CcHHH---HHHHHHHHHHH--H--HHcC------------CC
Confidence 999999999999999999999755 345554331100 00000 00000111110 0 0000 01
Q ss_pred ccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEc
Q psy1765 288 SPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIP 338 (867)
Q Consensus 288 ~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P 338 (867)
.+-..+++.+++|++.+++-.+.+... .+...+...|+++..+|
T Consensus 154 ~~d~~~gfr~~~r~~~~~l~~~~~~~~-------~~~~l~~~~g~~i~evp 197 (325)
T PRK10714 154 MGDYGCMLRAYRRHIVDAMLHCHERST-------FIPILANTFARRAIEIP 197 (325)
T ss_pred CCCCCcCeEEEcHHHHHHHHHCCCCcc-------HHHHHHHHcCCCEEEEE
Confidence 122234566899999999855544211 12234556799998888
No 57
>KOG2978|consensus
Probab=99.64 E-value=2.1e-15 Score=145.63 Aligned_cols=209 Identities=20% Similarity=0.294 Sum_probs=141.5
Q ss_pred CCcEEEEEEeCCCCh--HHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 51 LPSTSVIICFYNEHP--ATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~--~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
.++-|||+|+|||.. ..+.+.+.-...+.-..+ |||+|||+|.|++
T Consensus 2 ~~kYsvilPtYnEk~Nlpi~~~li~~~~~e~~~~~--eiIivDD~SpDGt------------------------------ 49 (238)
T KOG2978|consen 2 SIKYSVILPTYNEKENLPIITRLIAKYMSEEGKKY--EIIIVDDASPDGT------------------------------ 49 (238)
T ss_pred CcceeEEeccccCCCCCeeeHHHHHhhhhhhcCce--EEEEEeCCCCCcc------------------------------
Confidence 367899999999865 133445555555555566 8888888888883
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEE
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLV 208 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~ll 208 (867)
.+..++..+.+..++|.++-..+..|++.|.-.|+.+|+|+|++
T Consensus 50 ------------------------------------~~~a~~L~k~yg~d~i~l~pR~~klGLgtAy~hgl~~a~g~fiv 93 (238)
T KOG2978|consen 50 ------------------------------------QEVAKALQKIYGEDNILLKPRTKKLGLGTAYIHGLKHATGDFIV 93 (238)
T ss_pred ------------------------------------HHHHHHHHHHhCCCcEEEEeccCcccchHHHHhhhhhccCCeEE
Confidence 33344443334457999998888999999999999999999999
Q ss_pred EEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccc
Q psy1765 209 FLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILS 288 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~ 288 (867)
.||+|...+|.++..+++...++.-++|.+.. |.+. .|.+.|.+..+........+.+ ......+
T Consensus 94 iMDaDlsHhPk~ipe~i~lq~~~~~div~GTR---------Ya~~---ggV~gW~mkRk~IS~gAn~la~---~ll~~~~ 158 (238)
T KOG2978|consen 94 IMDADLSHHPKFIPEFIRLQKEGNYDIVLGTR---------YAGG---GGVYGWDMKRKIISRGANFLAR---ILLNPGV 158 (238)
T ss_pred EEeCccCCCchhHHHHHHHhhccCcceeeeee---------EcCC---CceecchhhHHHHhhhhHHHHH---HhccCCC
Confidence 99999999999999999988887656665422 3222 1234466644332211111110 0111234
Q ss_pred cccccceEeEeHHHHHHhCC--CCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 289 PTMAGGLFAIDRQYFDSLGQ--YDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 289 ~~~~G~~~airR~~f~~vGg--fDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
.-++|.+=+.+|++++.+=- -..+| -=.+|+..|+.+.|+.|--+|-+.|...+
T Consensus 159 sdltGsFrLykk~vl~~li~e~vSkGy----vfqmEll~ra~~~~y~IgEvPitFvdR~~ 214 (238)
T KOG2978|consen 159 SDLTGSFRLYKKEVLEKLIEESVSKGY----VFQMELLARARQHGYTIGEVPITFVDRTY 214 (238)
T ss_pred ccCcceeeeehHHHHHhhHHHhhccch----hhhHHHHHhccccCceEeecceEEEeecc
Confidence 56778888888888876410 01112 23689999999999999999966555443
No 58
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=99.63 E-value=3.4e-15 Score=140.08 Aligned_cols=115 Identities=28% Similarity=0.572 Sum_probs=95.3
Q ss_pred EEecC-CCceEeecCCCCCCCceEEecCCCCCCCccEEEccCCcEEec-cCceeeeCC----CCcEEEecCCCCCCCeEE
Q psy1765 680 IRLSG-TDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLA-ELLCLDAGA----TKPKLTKCHEMGGSQEWN 753 (867)
Q Consensus 680 i~~~~-sg~CLd~~~~~~~g~~v~l~~C~~~~~~Q~W~~~~~~~~~~~-s~~CLD~~g----~~v~~~~C~~~~~~Q~W~ 753 (867)
|++.. +++||++.+.. .+..|++++|++...+|+|.+...+.++.. +++|||+.+ +.+++++|++...+|+|.
T Consensus 3 ~~~~~~~~~cL~~~~~~-~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W~ 81 (124)
T cd00161 3 IRNVNNTGLCLDVNGGS-DGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDAPGSKVRLYTCSGGSDNQRWT 81 (124)
T ss_pred eEeCCCCCeEEECCCCC-CCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCCCCCEEEEEECCCCCcCCEEE
Confidence 55555 89999985433 678899999999448999999988877765 689999874 689999999855699999
Q ss_pred EecCCeeeeecCCCCceeecCCCC-CCCeEEEEecCCCCCceEEE
Q psy1765 754 FVLRDKTPIYSPATGTCLGSKNRL-ENTVIVMEMCAQHKDTSWDL 797 (867)
Q Consensus 754 ~~~~~~~~i~n~~sg~CLd~~~~~-~g~~v~~~~C~~~~~Q~W~~ 797 (867)
+...+ .|++.++++|||+.+.. .++.|.+++|+++.+|+|.|
T Consensus 82 ~~~~~--~i~~~~~~~cl~~~~~~~~~~~v~~~~c~~~~~Q~W~~ 124 (124)
T cd00161 82 FNKDG--TIRNLKSGKCLDVKGGNTNGTNLILWTCDGGPNQKWKF 124 (124)
T ss_pred ECCCc--EEEECCCCeEEeCCCCCCCCCEEEEEeCCCCccceEeC
Confidence 98664 38899999999998754 47899999999998999986
No 59
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=99.59 E-value=5.2e-15 Score=139.59 Aligned_cols=115 Identities=29% Similarity=0.517 Sum_probs=93.9
Q ss_pred eEEEecC-CCceEeecCCCCCCCceEEecCCCCCCCccEEEccCCcEEecc--CceeeeCCC----CcEEEecCCCCCCC
Q psy1765 678 FHIRLSG-TDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAE--LLCLDAGAT----KPKLTKCHEMGGSQ 750 (867)
Q Consensus 678 ~~i~~~~-sg~CLd~~~~~~~g~~v~l~~C~~~~~~Q~W~~~~~~~~~~~s--~~CLD~~g~----~v~~~~C~~~~~~Q 750 (867)
+.|++.. +++||++.+....+..|++++|++ ..+|.|.|+..+.++... .+||++.+. .|.+++|+....+|
T Consensus 3 g~i~~~~~~~~cl~~~~~~~~~~~v~l~~c~~-~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~~~~Q 81 (124)
T PF00652_consen 3 GYIRNVNKSGLCLDVQGSTKNGSPVVLYPCDG-SDNQLWRFDPDGQIRSNNNPNLCLDVDGSSPGTKIVLWPCDSNSSNQ 81 (124)
T ss_dssp EEEEEEEGGGEEEEEGGSSSTTTBEEEEE--S-SGGGEEEEETTSBEEETTETTEEEEESSSSTTEBEEEEETTTTGGGG
T ss_pred eEEEEeeCCCCeEEEcCCCCCCCEEEEEECCC-CCceeEEEcCCCceeeccCcceEEEeeccCCCceEEEeeccCCccCC
Confidence 5566655 999999964556788999999999 888999999999888653 459999855 49999999876679
Q ss_pred eEEEecCCeeeeecCCCCceeecCCCCCCCeEEEEecCCCCCceE
Q psy1765 751 EWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKDTSW 795 (867)
Q Consensus 751 ~W~~~~~~~~~i~n~~sg~CLd~~~~~~g~~v~~~~C~~~~~Q~W 795 (867)
+|.+...+ +|+|..+++||++.+...+..|++++|+++++|+|
T Consensus 82 ~W~~~~~~--~i~n~~s~~cL~~~~~~~~~~l~~~~c~~~~~Q~W 124 (124)
T PF00652_consen 82 RWKFDPDG--RIRNKNSGLCLDVKGGSDGNPLVLWPCNGSPNQQW 124 (124)
T ss_dssp BEEEETTS--BEEETTTTEEEEEGGGSTTEBEEEEE-TSSGGGBE
T ss_pred eEEEcCCe--eEEeCCCCEEEEecCCCCCCEEEEEECCCCccccC
Confidence 99999833 38999999999998755678999999999999999
No 60
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=99.58 E-value=1.1e-14 Score=136.16 Aligned_cols=111 Identities=24% Similarity=0.479 Sum_probs=90.9
Q ss_pred cCCCceEeecCCCCCCCceEEecCCCCCCCccEEEccCCcEEeccCceeeeCC---CCcEEEecCCCCCCCeEEEecCCe
Q psy1765 683 SGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGA---TKPKLTKCHEMGGSQEWNFVLRDK 759 (867)
Q Consensus 683 ~~sg~CLd~~~~~~~g~~v~l~~C~~~~~~Q~W~~~~~~~~~~~s~~CLD~~g---~~v~~~~C~~~~~~Q~W~~~~~~~ 759 (867)
..+++|||+.+. +..+++++|++.+.+|+|.++..+.++..+++|||+.+ +.+++++|++...+|+|.+..++.
T Consensus 4 ~~~~~Cl~~~~~---~~~v~l~~c~~~~~~Q~w~~~~~g~~~~~~~~Cl~~~~~~~~~v~l~~c~~~~~~Q~W~~~~~~~ 80 (117)
T smart00458 4 GNTGKCLDVNGN---SNPVGLFDCHGTGGNQLWKLTSDGAIRIATDLCLTANGNTGSTVTLYSCDGDADNQYWTVNKDGT 80 (117)
T ss_pred ccCCccEecCCC---CceEEEEeCCCCCccceEEEeCCCeEEecCCccCccCCCCCCEEEEEECCCCCcCCEEEECCCee
Confidence 368899998432 15799999998667899999988877654789999886 478999999855699999987443
Q ss_pred eeeecCCCCceeecCCCCCCCeEEEEecCCCCCceEEEe
Q psy1765 760 TPIYSPATGTCLGSKNRLENTVIVMEMCAQHKDTSWDLV 798 (867)
Q Consensus 760 ~~i~n~~sg~CLd~~~~~~g~~v~~~~C~~~~~Q~W~~~ 798 (867)
|+++.+++|||+.+..++..++++.|++.++|+|.|.
T Consensus 81 --i~~~~~~~cl~~~~~~~~~~~~~~~c~~~~~Q~W~~~ 117 (117)
T smart00458 81 --IRNPDSGLCLDVKDGNTGTKVILWTCNGNPNQKWIFE 117 (117)
T ss_pred --EEeCCCCEEEecCCCCCCceEEEEeCCCCccccEEeC
Confidence 8899999999997654445799999999989999873
No 61
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=99.58 E-value=3e-14 Score=137.07 Aligned_cols=153 Identities=29% Similarity=0.390 Sum_probs=121.6
Q ss_pred EEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhhhhh
Q psy1765 56 VIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGA 135 (867)
Q Consensus 56 VIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~~g~ 135 (867)
||||+||+.. .|.++|.|++.++++.. ||+|+||+|++.+
T Consensus 1 iii~~~~~~~-~l~~~l~s~~~~~~~~~--~i~i~~~~~~~~~------------------------------------- 40 (156)
T cd00761 1 VIIPAYNEEP-YLERCLESLLAQTYPNF--EVIVVDDGSTDGT------------------------------------- 40 (156)
T ss_pred CEEeecCcHH-HHHHHHHHHHhCCccce--EEEEEeCCCCccH-------------------------------------
Confidence 6999999765 99999999999988666 9999999998872
Q ss_pred hhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcc
Q psy1765 136 KYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIE 215 (867)
Q Consensus 136 ~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~ 215 (867)
.+.+....+.. ..+.++...++.|.+.++|.|+..+.+|+++++|+|+.
T Consensus 41 -----------------------------~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~d~v~~~d~D~~ 89 (156)
T cd00761 41 -----------------------------LEILEEYAKKD--PRVIRVINEENQGLAAARNAGLKAARGEYILFLDADDL 89 (156)
T ss_pred -----------------------------HHHHHHHHhcC--CCeEEEEecCCCChHHHHHHHHHHhcCCEEEEECCCCc
Confidence 11222222211 35677777789999999999999999999999999999
Q ss_pred cCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccc
Q psy1765 216 VNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGG 294 (867)
Q Consensus 216 v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~ 294 (867)
+.+++++.++..+..++. .++.+. +
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~v~~~------------------------------------------------------~ 115 (156)
T cd00761 90 LLPDWLERLVAELLADPEADAVGGP------------------------------------------------------G 115 (156)
T ss_pred cCccHHHHHHHHHhcCCCceEEecc------------------------------------------------------c
Confidence 999999998665554443 222210 5
Q ss_pred eEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeE
Q psy1765 295 LFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSL 334 (867)
Q Consensus 295 ~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i 334 (867)
+++++++.|+++|+|++....+ +||.+++.++...|..+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~~~-~ed~~~~~~~~~~g~~~ 154 (156)
T cd00761 116 NLLFRRELLEEIGGFDEALLSG-EEDDDFLLRLLRGGKVA 154 (156)
T ss_pred hheeeHHHHHHhCCcchHhcCC-cchHHHHHHHHhhcccc
Confidence 6799999999999999988765 89999999998877654
No 62
>PRK11234 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.57 E-value=1.4e-14 Score=173.76 Aligned_cols=204 Identities=12% Similarity=0.093 Sum_probs=135.3
Q ss_pred CCCCCcEEEEEEeCCCChHHHHHHHHHHH-hcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchh
Q psy1765 48 PSTLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREG 126 (867)
Q Consensus 48 ~~~~P~vSVIIp~yNe~~~~l~~~l~Svl-~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~g 126 (867)
....|.|||+||+|||+. .+.+++++++ .++||++ |||+++|.+++.
T Consensus 59 ~~~~~~vsIlVPa~nE~~-vi~~~i~~ll~~ldYP~~--eI~vi~~~nD~~----------------------------- 106 (727)
T PRK11234 59 KPDEKPLAIMVPAWNETG-VIGNMAELAATTLDYENY--HIFVGTYPNDPA----------------------------- 106 (727)
T ss_pred cCCCCCEEEEEecCcchh-hHHHHHHHHHHhCCCCCe--EEEEEecCCChh-----------------------------
Confidence 355689999999999887 9999999987 6899997 999999866544
Q ss_pred hHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCC--CcCchhHHhHhhhhc--
Q psy1765 127 LIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSK--REGLIRARMFGAKYA-- 202 (867)
Q Consensus 127 i~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~--n~G~a~ArN~G~~~A-- 202 (867)
|.+.+++..+++ ++++++..+. +.|++.|.|.|+..+
T Consensus 107 -------------------------------------T~~~~~~l~~~~--p~~~~v~~~~~g~~gKa~aLN~~l~~~~~ 147 (727)
T PRK11234 107 -------------------------------------TQADVDAVCARF--PNVHKVVCARPGPTSKADCLNNVLDAITQ 147 (727)
T ss_pred -------------------------------------HHHHHHHHHHHC--CCcEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence 244566666655 6676555444 789999999999987
Q ss_pred -----C--CCEEEEEcCCcccCccchHHHHHHHHhcCCcee-eeEEeeecCCCceeccccccccccccccccccccCCcC
Q psy1765 203 -----T--GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVT-VPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKG 274 (867)
Q Consensus 203 -----~--Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv-~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~ 274 (867)
. .+++++.|+|+.++|+.|. +++.+.... .+| +|.. ..... ..-.........|.+ .+.. ..+..
T Consensus 148 ~e~~~~~~~~vvvi~DAD~~v~pd~L~-~~~~l~~~~-~~VQ~p~~-p~~~~-~~~~~~~~~~~EFa~--~~~~-~~~~~ 220 (727)
T PRK11234 148 FERSANFAFAGFILHDAEDVISPMELR-LFNYLVERK-DLIQIPVY-PFERE-WTHFTSGTYIDEFAE--LHGK-DVPVR 220 (727)
T ss_pred hhcccCCcccEEEEEcCCCCCChhHHH-HHHhhcCCC-CeEeeccc-CCCcc-HHHHHHHHHHHHHHH--Hhhh-hhHHH
Confidence 3 3568889999999999998 667776443 343 3322 11100 000000000011111 0000 00000
Q ss_pred cCCCCCCCCCcccccccccceEeE-eH--HHHHHhC---CCCCCCCCCcccchHHHHHHHHcCCeEEEEccc
Q psy1765 275 TLNSSEDFIKPILSPTMAGGLFAI-DR--QYFDSLG---QYDAGLEIWGGENLELSFRIWMCGGSLAMIPCS 340 (867)
Q Consensus 275 ~~~~~~~~~~p~~~~~~~G~~~ai-rR--~~f~~vG---gfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s 340 (867)
. .... ...++|..+++ || +++.++| +||++.. .||+|+++|+..+|+++.+.|..
T Consensus 221 ~-----~lgg---~~~l~G~~~af~Rr~l~al~~~ggg~~~~~~~l---TED~dlg~rL~~~G~~v~f~~~~ 281 (727)
T PRK11234 221 E-----ALAG---QVPSAGVGTCFSRRAVTALLEDGDGIAFDVQSL---TEDYDIGFRLKEKGMREIFVRFP 281 (727)
T ss_pred H-----HcCC---CcccCCceEEEecccHHHHHHhcCCCCcCCCcc---hHHHHHHHHHHHCCCEEEEcccc
Confidence 0 0001 12566778899 66 4688888 6998875 69999999999999999999943
No 63
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.55 E-value=2.2e-14 Score=144.46 Aligned_cols=107 Identities=32% Similarity=0.372 Sum_probs=90.6
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHH
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRA 130 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a 130 (867)
+|++|||||+||++. .|.++|.|+++|++.++ |||||||||+|++
T Consensus 2 ~~~~siiip~~n~~~-~l~~~l~s~~~q~~~~~--eiivvddgs~d~t-------------------------------- 46 (291)
T COG0463 2 MPKVSVVIPTYNEEE-YLPEALESLLNQTYKDF--EIIVVDDGSTDGT-------------------------------- 46 (291)
T ss_pred CccEEEEEeccchhh-hHHHHHHHHHhhhhcce--EEEEEeCCCCCCh--------------------------------
Confidence 689999999999875 99999999999999987 9999999999983
Q ss_pred hhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEE
Q psy1765 131 RMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFL 210 (867)
Q Consensus 131 ~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfL 210 (867)
.+.+.++.... ..+.......|.|.+.|+|.|+..+.|++++|+
T Consensus 47 ----------------------------------~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 90 (291)
T COG0463 47 ----------------------------------TEIAIEYGAKD--VRVIRLINERNGGLGAARNAGLEYARGDYIVFL 90 (291)
T ss_pred ----------------------------------HHHHHHHhhhc--ceEEEeecccCCChHHHHHhhHHhccCCEEEEE
Confidence 23444444332 357777778899999999999999999999999
Q ss_pred cCCcccCccchHHHHHHHH
Q psy1765 211 DSHIEVNTHWLEPLLVPIA 229 (867)
Q Consensus 211 DaD~~v~p~wLe~Ll~~l~ 229 (867)
|+|.. .+..+..++....
T Consensus 91 d~d~~-~~~~~~~~~~~~~ 108 (291)
T COG0463 91 DADDQ-HPPELIPLVAAGG 108 (291)
T ss_pred ccCCC-CCHHHHHHHHHhh
Confidence 99999 9998888555543
No 64
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=99.54 E-value=4.3e-14 Score=148.92 Aligned_cols=101 Identities=21% Similarity=0.234 Sum_probs=86.8
Q ss_pred cEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHhh
Q psy1765 53 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARM 132 (867)
Q Consensus 53 ~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~~ 132 (867)
+||||||+|||+. .|.+||+||..|+. |||||||||+|++
T Consensus 1 ~isvii~~~Ne~~-~l~~~l~sl~~~~~-----eiivvD~gStD~t---------------------------------- 40 (229)
T cd02511 1 TLSVVIITKNEER-NIERCLESVKWAVD-----EIIVVDSGSTDRT---------------------------------- 40 (229)
T ss_pred CEEEEEEeCCcHH-HHHHHHHHHhcccC-----EEEEEeCCCCccH----------------------------------
Confidence 4899999999876 99999999988742 9999999999883
Q ss_pred hhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcC
Q psy1765 133 FGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDS 212 (867)
Q Consensus 133 ~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDa 212 (867)
.+.+. . .+++++.. .+.|++.++|.|+..|++|||+++|+
T Consensus 41 --------------------------------~~i~~----~---~~~~v~~~-~~~g~~~~~n~~~~~a~~d~vl~lDa 80 (229)
T cd02511 41 --------------------------------VEIAK----E---YGAKVYQR-WWDGFGAQRNFALELATNDWVLSLDA 80 (229)
T ss_pred --------------------------------HHHHH----H---cCCEEEEC-CCCChHHHHHHHHHhCCCCEEEEEeC
Confidence 12222 2 36778877 69999999999999999999999999
Q ss_pred CcccCccchHHHHHHHHhcCC
Q psy1765 213 HIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 213 D~~v~p~wLe~Ll~~l~~~~~ 233 (867)
|..++|++++.+++.+.+++.
T Consensus 81 D~~~~~~~~~~l~~~~~~~~~ 101 (229)
T cd02511 81 DERLTPELADEILALLATDDY 101 (229)
T ss_pred CcCcCHHHHHHHHHHHhCCCC
Confidence 999999999999999987764
No 65
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=99.54 E-value=1.4e-13 Score=164.48 Aligned_cols=215 Identities=14% Similarity=0.093 Sum_probs=134.9
Q ss_pred CCCCcEEEEEEeCCCChH----HHHHHHHHHHhcCcc-ccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEecc
Q psy1765 49 STLPSTSVIICFYNEHPA----TLYRSVQTLLSRTGQ-SLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSK 123 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~----~l~~~l~Svl~qt~~-~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (867)
...|+|+||||+|||+.. .|+.+++|+..+.++ ++ ||+|+||+++++. ...+
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~~~~~~~~--e~~vLdD~~d~~~---~~~e------------------ 177 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAATGHGAHF--DFFILSDTRDPDI---AAAE------------------ 177 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHhcCCCCCE--EEEEEECCCChhH---HHHH------------------
Confidence 456899999999999863 688999999998775 56 9999999998872 0000
Q ss_pred chhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcC-CCCEEEEEcCCCcCc-hhHHhHhhhh
Q psy1765 124 REGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLN-NGRVHLYRTSKREGL-IRARMFGAKY 201 (867)
Q Consensus 124 ~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~-~~~vrii~~~~n~G~-a~ArN~G~~~ 201 (867)
.+.+.+..+++. ..+|.+.+..+|.|. ++..|.+++.
T Consensus 178 -----------------------------------------~~~~~~L~~~~~~~~~i~yr~R~~n~~~KaGNl~~~~~~ 216 (691)
T PRK05454 178 -----------------------------------------EAAWLELRAELGGEGRIFYRRRRRNVGRKAGNIADFCRR 216 (691)
T ss_pred -----------------------------------------HHHHHHHHHhcCCCCcEEEEECCcCCCccHHHHHHHHHh
Confidence 011223333321 257888887777775 3334444666
Q ss_pred --cCCCEEEEEcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCC
Q psy1765 202 --ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNS 278 (867)
Q Consensus 202 --A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~ 278 (867)
+.+||++++|+|..+++++|.+++..+..++. ++|......++.+++...-. .|.-.+.............
T Consensus 217 ~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~vGlVQt~~~~~n~~slfaR~q-----qf~~~~y~~~~~~G~~~w~- 290 (691)
T PRK05454 217 WGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPRAGLIQTLPVAVGADTLFARLQ-----QFATRVYGPLFAAGLAWWQ- 290 (691)
T ss_pred cCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcCEEEEeCCccCcCCCCHHHHHH-----HHHHHHHHHHHHhhhhhhc-
Confidence 56799999999999999999999999987765 44432111222222110000 0000000000000000000
Q ss_pred CCCCCCcccccccccceEeEeHHHHHHhCCCCC--CCCCCc----ccchHHHHHHHHcCCeEEEEccc
Q psy1765 279 SEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDA--GLEIWG----GENLELSFRIWMCGGSLAMIPCS 340 (867)
Q Consensus 279 ~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe--~~~~~G----~ED~Dls~Rl~~~G~~i~~~P~s 340 (867)
.......|.+.++||+.|.++||+.+ +...|+ .||++++.+++.+||++.++|+.
T Consensus 291 -------~~~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~~pd~ 351 (691)
T PRK05454 291 -------GGEGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWLAPDL 351 (691)
T ss_pred -------cCccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEEcCcc
Confidence 01124568889999999999876533 122222 68999999999999999999974
No 66
>cd00161 RICIN Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ligand binding occurs on exposed surfaces of the compact domain sturcture.
Probab=99.52 E-value=7.4e-14 Score=130.94 Aligned_cols=117 Identities=30% Similarity=0.549 Sum_probs=92.4
Q ss_pred eeeecC-CCceecccCCCCCCCcEEEEecCCCCCCceeeecCCCceEEe-eceeeecCC----CccEEEeCCCCCCCcce
Q psy1765 549 HIRLSS-TDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLA-ELLCLDAGA----TKPKLTKCHEMGGSQEY 622 (867)
Q Consensus 549 ~ir~~~-~~~CLD~~~~~~~g~~v~l~~C~~~~~~Q~w~~t~~~~i~~~-~~~CLd~~g----~~v~l~~C~~~~~~Q~~ 622 (867)
.|++.. +++|||+.+.. .|.+|.+++|++...+|.|.++.+|.++.. .++|||+.+ ..+.+++|++...+|.|
T Consensus 2 ~~~~~~~~~~cL~~~~~~-~~~~v~~~~c~~~~~~Q~W~~~~~g~~~~~~~~~Cl~~~~~~~~~~~~~~~c~~~~~~Q~W 80 (124)
T cd00161 2 TIRNVNNTGLCLDVNGGS-DGGPVQLYPCHGNGNNQKWTLTSDGTIRIKSSNLCLDVGGDAPGSKVRLYTCSGGSDNQRW 80 (124)
T ss_pred eeEeCCCCCeEEECCCCC-CCCEEEEEECCCCCccCCEEEeCCCeEEEcCCCeEEcccCCCCCCEEEEEECCCCCcCCEE
Confidence 345556 89999988754 789999999998867999999999998854 689999875 46899999986666664
Q ss_pred eeeeeeccceeeecccCcccccCCChhhhhhhhhccccCCCCCcccccccccccceEEEecCCCceEeecCCCCCCCceE
Q psy1765 623 WCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLV 702 (867)
Q Consensus 623 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~W~~~~~~~~~~~~i~~~~sg~CLd~~~~~~~g~~v~ 702 (867)
.+ . ..+.|++..+++||++......+..+.
T Consensus 81 -~~--------------------------------------------~-----~~~~i~~~~~~~cl~~~~~~~~~~~v~ 110 (124)
T cd00161 81 -TF--------------------------------------------N-----KDGTIRNLKSGKCLDVKGGNTNGTNLI 110 (124)
T ss_pred -EE--------------------------------------------C-----CCcEEEECCCCeEEeCCCCCCCCCEEE
Confidence 32 1 126788888999999843222677899
Q ss_pred EecCCCCCCCccEEE
Q psy1765 703 LKKCDELSKTQRWSK 717 (867)
Q Consensus 703 l~~C~~~~~~Q~W~~ 717 (867)
+++|++ +.+|+|.|
T Consensus 111 ~~~c~~-~~~Q~W~~ 124 (124)
T cd00161 111 LWTCDG-GPNQKWKF 124 (124)
T ss_pred EEeCCC-CccceEeC
Confidence 999999 69999975
No 67
>PF00652 Ricin_B_lectin: Ricin-type beta-trefoil lectin domain; InterPro: IPR000772 Ricin is a legume lectin from the seeds of the castor bean plant, Ricinus communis. The seeds are poisonous to people, animals and insects and just one milligram of ricin can kill an adult. Primary structure analysis has shown the presence of a similar domain in many carbohydrate-recognition proteins like plant and bacterial AB-toxins, glycosidases or proteases [, , ]. This domain, known as the ricin B lectin domain, can be present in one or more copies and has been shown in some instance to bind simple sugars, such as galactose or lactose. The ricin B lectin domain is composed of three homologous subdomains of 40 amino acids (alpha, beta and gamma) and a linker peptide of around 15 residues (lambda). It has been proposed that the ricin B lectin domain arose by gene triplication from a primitive 40 residue galactoside-binding peptide [, ]. The most characteristic, though not completely conserved, sequence feature is the presence of a Q-W pattern. Consequently, the ricin B lectin domain as also been refered as the (QxW)3 domain and the three homologous regions as the QxW repeats [, ]. A disulphide bond is also conserved in some of the QxW repeats []. The 3D structure of the ricin B chain has shown that the three QxW repeats pack around a pseudo threefold axis that is stabilised by the lambda linker []. The ricin B lectin domain has no major segments of a helix or beta sheet but each of the QxW repeats contains an omega loop []. An idealized omega-loop is a compact, contiguous segment of polypeptide that traces a 'loop-shaped' path in three-dimensional space; the main chain resembles a Greek omega.; PDB: 2VLC_B 3A22_B 3A21_B 3A23_B 1GGP_B 1VCL_A 2Z48_B 2Z49_A 2D7R_A 2D7I_A ....
Probab=99.51 E-value=3.7e-14 Score=133.80 Aligned_cols=115 Identities=32% Similarity=0.539 Sum_probs=89.7
Q ss_pred eeeeecC-CCceecccCCCCCCCcEEEEecCCCCCCceeeecCCCceEEee--ceeeecCCCc----cEEEeCCCCCCCc
Q psy1765 548 FHIRLSS-TDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAE--LLCLDAGATK----PKLTKCHEMGGSQ 620 (867)
Q Consensus 548 g~ir~~~-~~~CLD~~~~~~~g~~v~l~~C~~~~~~Q~w~~t~~~~i~~~~--~~CLd~~g~~----v~l~~C~~~~~~Q 620 (867)
|.|++.. +++|||+.+....|.+|.|++|++ ..+|.|.++.++.|+... .+||++.+.. +.+++|+....+|
T Consensus 3 g~i~~~~~~~~cl~~~~~~~~~~~v~l~~c~~-~~~Q~w~~~~~~~i~~~~~~~~CL~~~~~~~~~~i~l~~C~~~~~~Q 81 (124)
T PF00652_consen 3 GYIRNVNKSGLCLDVQGSTKNGSPVVLYPCDG-SDNQLWRFDPDGQIRSNNNPNLCLDVDGSSPGTKIVLWPCDSNSSNQ 81 (124)
T ss_dssp EEEEEEEGGGEEEEEGGSSSTTTBEEEEE--S-SGGGEEEEETTSBEEETTETTEEEEESSSSTTEBEEEEETTTTGGGG
T ss_pred eEEEEeeCCCCeEEEcCCCCCCCEEEEEECCC-CCceeEEEcCCCceeeccCcceEEEeeccCCCceEEEeeccCCccCC
Confidence 4566655 999999985556899999999999 668999999999998644 3599998655 8999999866666
Q ss_pred ceeeeeeeccceeeecccCcccccCCChhhhhhhhhccccCCCCCcccccccccccceEEEecCCCceEeecCCCCCCCc
Q psy1765 621 EYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSP 700 (867)
Q Consensus 621 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~W~~~~~~~~~~~~i~~~~sg~CLd~~~~~~~g~~ 700 (867)
.| .|. . .+.|++..+++||++.... .++.
T Consensus 82 ~W-~~~--------------------------------------------~-----~~~i~n~~s~~cL~~~~~~-~~~~ 110 (124)
T PF00652_consen 82 RW-KFD--------------------------------------------P-----DGRIRNKNSGLCLDVKGGS-DGNP 110 (124)
T ss_dssp BE-EEE--------------------------------------------T-----TSBEEETTTTEEEEEGGGS-TTEB
T ss_pred eE-EEc--------------------------------------------C-----CeeEEeCCCCEEEEecCCC-CCCE
Confidence 64 432 1 3689999999999995433 6789
Q ss_pred eEEecCCCCCCCccE
Q psy1765 701 LVLKKCDELSKTQRW 715 (867)
Q Consensus 701 v~l~~C~~~~~~Q~W 715 (867)
|++++|++ +++|+|
T Consensus 111 l~~~~c~~-~~~Q~W 124 (124)
T PF00652_consen 111 LVLWPCNG-SPNQQW 124 (124)
T ss_dssp EEEEE-TS-SGGGBE
T ss_pred EEEEECCC-CccccC
Confidence 99999966 899999
No 68
>smart00458 RICIN Ricin-type beta-trefoil. Carbohydrate-binding domain formed from presumed gene triplication.
Probab=99.44 E-value=6.8e-13 Score=123.94 Aligned_cols=110 Identities=25% Similarity=0.435 Sum_probs=86.6
Q ss_pred CCCceecccCCCCCCCcEEEEecCCCCCCceeeecCCCceEEeeceeeecCC---CccEEEeCCCCCCCcceeeeeeecc
Q psy1765 554 STDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLDAGA---TKPKLTKCHEMGGSQEYWCWLRCKS 630 (867)
Q Consensus 554 ~~~~CLD~~~~~~~g~~v~l~~C~~~~~~Q~w~~t~~~~i~~~~~~CLd~~g---~~v~l~~C~~~~~~Q~~w~~~~~~~ 630 (867)
.+++|||+.+.. +.|.+++|++...+|.|.|+.+|.++...++|||+.+ ..+.++.|++...+|.| .|.
T Consensus 5 ~~~~Cl~~~~~~---~~v~l~~c~~~~~~Q~w~~~~~g~~~~~~~~Cl~~~~~~~~~v~l~~c~~~~~~Q~W-~~~---- 76 (117)
T smart00458 5 NTGKCLDVNGNS---NPVGLFDCHGTGGNQLWKLTSDGAIRIATDLCLTANGNTGSTVTLYSCDGDADNQYW-TVN---- 76 (117)
T ss_pred cCCccEecCCCC---ceEEEEeCCCCCccceEEEeCCCeEEecCCccCccCCCCCCEEEEEECCCCCcCCEE-EEC----
Confidence 688999987532 6899999998677999999999998754779999886 35789999986677764 321
Q ss_pred ceeeecccCcccccCCChhhhhhhhhccccCCCCCcccccccccccceEEEecCCCceEeecCCCCCCCceEEecCCCCC
Q psy1765 631 FKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELS 710 (867)
Q Consensus 631 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~W~~~~~~~~~~~~i~~~~sg~CLd~~~~~~~g~~v~l~~C~~~~ 710 (867)
..+.|++..+++|||+...... ..+++++|++ .
T Consensus 77 ---------------------------------------------~~~~i~~~~~~~cl~~~~~~~~-~~~~~~~c~~-~ 109 (117)
T smart00458 77 ---------------------------------------------KDGTIRNPDSGLCLDVKDGNTG-TKVILWTCNG-N 109 (117)
T ss_pred ---------------------------------------------CCeeEEeCCCCEEEecCCCCCC-ceEEEEeCCC-C
Confidence 1367888899999998433322 5799999998 6
Q ss_pred CCccEEEc
Q psy1765 711 KTQRWSKT 718 (867)
Q Consensus 711 ~~Q~W~~~ 718 (867)
++|+|.+.
T Consensus 110 ~~Q~W~~~ 117 (117)
T smart00458 110 PNQKWIFE 117 (117)
T ss_pred ccccEEeC
Confidence 89999873
No 69
>PF13712 Glyco_tranf_2_5: Glycosyltransferase like family; PDB: 2QGI_A 2NXV_B.
Probab=99.41 E-value=1.4e-12 Score=135.72 Aligned_cols=150 Identities=16% Similarity=0.174 Sum_probs=79.4
Q ss_pred CcCchhHHhHhhhhcCCCEEEEEcCCccc-CccchHHHHHHHHhcCCceeeeEEeee--cCCCceecccccccccccccc
Q psy1765 188 REGLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPIIDII--NADTFQYTSSALVRGGFNWGL 264 (867)
Q Consensus 188 n~G~a~ArN~G~~~A~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~~~vv~p~i~~i--~~~~~~~~~~~~~~g~f~~~l 264 (867)
..+.+.|.|.|++.|+++|++||+.|+.+ +++|+..+++.+.+++...+.++.... ........ .....|.. .
T Consensus 39 ~~s~~~~yN~a~~~a~~~ylvflHqDv~i~~~~~l~~il~~~~~~~~~G~iGvaG~~~~~~~~~~w~-~~~~~g~~---~ 114 (217)
T PF13712_consen 39 AKSMAAAYNEAMEKAKAKYLVFLHQDVFIINENWLEDILEIFEEDPNIGMIGVAGSKRLPPNGVWWE-SPNKVGKV---R 114 (217)
T ss_dssp -S-TTTHHHHHGGG--SSEEEEEETTEE-SSHHHHHHHHHHHHH-TTEEEEESEEEESS-S-TTS----EEEEEET---T
T ss_pred CcCHHHHHHHHHHhCCCCEEEEEeCCeEEcchhHHHHHHHHHhhCCCccEEEeecCCcCCCCCcccc-cccccccc---c
Confidence 35788999999999999999999999988 689999999999777764333333221 11000000 00000000 0
Q ss_pred cccc--ccCCcC---cCCC-CCCCCCcccccccccceEeEeHHHHHHhCCCCCC-CCCCcccchHHHHHHHHcCCeEEEE
Q psy1765 265 HFKW--ENLPKG---TLNS-SEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAG-LEIWGGENLELSFRIWMCGGSLAMI 337 (867)
Q Consensus 265 ~~~~--~~~~~~---~~~~-~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~-~~~~G~ED~Dls~Rl~~~G~~i~~~ 337 (867)
.... ...+.. ...- ......+.++.++-|.+|+++|+++ +|||. |..|-+-|+|+|++++++|+++ ++
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~avDg~ll~~~~dv~----~fde~~~~gfH~Ydvd~cl~~~~~G~~v-~~ 189 (217)
T PF13712_consen 115 EYGRIMHGHGPNSAGEVRYGGPRNDPPEEVQAVDGLLLATQKDVP----RFDEDLFTGFHFYDVDQCLEARRAGYRV-VV 189 (217)
T ss_dssp EEEE----E-------------ES-SSEEEEEE-TTEEEEETTB---------SS--SSSSHHHHHHHHHHHTT-EE-EE
T ss_pred ccccccccccccccccccccccccCCceeEEEecceEEEEEcccC----CCCccccCCcchHHHHHHHHHHHhCCEE-Ee
Confidence 0000 000000 0000 0011245678889999999999999 99999 6666679999999999999998 55
Q ss_pred cccEEEEEe
Q psy1765 338 PCSRIGHVF 346 (867)
Q Consensus 338 P~s~V~H~~ 346 (867)
+...+.|..
T Consensus 190 ~~~~~~H~s 198 (217)
T PF13712_consen 190 PPPWCIHFS 198 (217)
T ss_dssp -----EE-S
T ss_pred cCceEEEcC
Confidence 668888865
No 70
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=99.40 E-value=6.5e-13 Score=157.64 Aligned_cols=195 Identities=14% Similarity=0.127 Sum_probs=127.9
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHH-hcCccccccEEEEE---ECCCCCCCCchhhHHHHHhhcCCCceEEEEeccc
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLL-SRTGQSLLHEIILV---NDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKR 124 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl-~qt~~~~~~EiIlV---Dd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (867)
...|.+||+||+|||+. .|.++|++++ .++||++ ||+|+ ||++|
T Consensus 68 ~~~~~vsIlVPa~nE~~-VI~~~v~~ll~~ldYp~~--~I~v~~~~nD~~T----------------------------- 115 (703)
T PRK15489 68 RDEQPLAIMVPAWKEYD-VIAKMIENMLATLDYRRY--VIFVGTYPNDAET----------------------------- 115 (703)
T ss_pred cCCCceEEEEeCCCcHH-HHHHHHHHHHhcCCCCCe--EEEEEecCCCccH-----------------------------
Confidence 45579999999999887 9999999987 6799988 98884 55533
Q ss_pred hhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCC--cCchhHHhHhhhhc
Q psy1765 125 EGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKR--EGLIRARMFGAKYA 202 (867)
Q Consensus 125 ~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n--~G~a~ArN~G~~~A 202 (867)
.+.+++....+ |++++|..+.+ .|++.|.|.|+..+
T Consensus 116 ----------------------------------------~~~~~~~~~~~--p~~~~v~~~~~gp~gKa~ALN~~l~~~ 153 (703)
T PRK15489 116 ----------------------------------------ITEVERMRRRY--KRLVRVEVPHDGPTCKADCLNWIIQAI 153 (703)
T ss_pred ----------------------------------------HHHHHHHhccC--CcEEEEEcCCCCCCCHHHHHHHHHHHH
Confidence 23344444444 57777766544 78999999999875
Q ss_pred -------CCCE--EEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceecccccccccccc--ccccccccC
Q psy1765 203 -------TGKV--LVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNW--GLHFKWENL 271 (867)
Q Consensus 203 -------~Gd~--llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~--~l~~~~~~~ 271 (867)
.++| |++.|+|+.++|+.|..+ +.+..++..+-+|+....+... ....+.|.- ...++. .+
T Consensus 154 ~~~e~~~~~~fa~vvi~DAEd~~~P~~L~~~-~~~~~~~~~iQ~pV~~~~~~~~------~~l~~~~~~Efa~~~~~-~l 225 (703)
T PRK15489 154 FRYEAGHGIEFAGVILHDSEDVLHPLELKYF-NYLLPRKDLVQLPVLSLERKWY------EWVAGTYMDEFAEWHQK-DL 225 (703)
T ss_pred HhhhhhccCccceEEEEcCCCCCChhHHHHH-HhhcCCcceeeeeeccCCCccc------cHHHHHHHHHHHHHhhh-HH
Confidence 3444 899999999999999765 5555555444455543221110 011111100 000000 00
Q ss_pred CcCcCCCCCCCCCcccccccccceEeEeHHHHHHh---C---CCCCCCCCCcccchHHHHHHHHcCCeEEE
Q psy1765 272 PKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSL---G---QYDAGLEIWGGENLELSFRIWMCGGSLAM 336 (867)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~v---G---gfDe~~~~~G~ED~Dls~Rl~~~G~~i~~ 336 (867)
+.. .....+ + .++|..+++||++++++ | +||.+.. -||+|+++|+.+.|++..+
T Consensus 226 ~~r-----~~l~~~--i-pl~Gv~~~frr~aL~~l~~~gg~~~~n~~sL---TED~Dlg~RL~~~G~r~~f 285 (703)
T PRK15489 226 VVR-----ESLTGT--V-PSAGVGTCFSRRALLALMKERGNQPFNTSSL---TEDYDFSFRLAELGMQEIF 285 (703)
T ss_pred HHH-----HHcCCc--e-eccCcceeeeHHHHHHHHHhcCCCCCCCCCc---hHhHHHHHHHHHCCCceEE
Confidence 100 001111 2 35677889999998887 5 4776554 6999999999999999988
No 71
>cd00899 b4GalT Beta-4-Galactosyltransferase is involved in the formation of the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. Beta-4-Galactosyltransferase transfers galactose from uridine diphosphogalactose to the terminal beta-N-acetylglucosamine residues, hereby forming the poly-N-acetyllactosamine core structures present in glycoproteins and glycosphingolipids. At least seven homologous beta-4-galactosyltransferase isoforms have been identified that use different types of glycoproteins and glycolipids as substrates. Of the seven identified members of the beta-1,4-galactosyltransferase subfamily (beta1,4-Gal-T1 to -T7), b1,4-Gal-T1 is most characterized (biochemically). It is a Golgi-resident type II membrane enzyme with a cytoplasmic domain, membrane spanning region, and a stem region and catalytic domain facing the lumen.
Probab=99.19 E-value=3.4e-10 Score=116.14 Aligned_cols=119 Identities=21% Similarity=0.240 Sum_probs=82.8
Q ss_pred CcCchhHHhHhhhhc----CCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccc
Q psy1765 188 REGLIRARMFGAKYA----TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWG 263 (867)
Q Consensus 188 n~G~a~ArN~G~~~A----~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~ 263 (867)
.+..+...|.|+..| ..++++|-|.|.++..+++.- .+.+.|. -+++.++ . +
T Consensus 47 ~FNR~~llNvG~~~a~k~~~~dc~i~hDVDllP~~~~~~y---~~~~~p~-H~s~~~~-----~------------~--- 102 (219)
T cd00899 47 RFNRAKLLNVGFLEALKDGDWDCFIFHDVDLLPENDRNLY---GCEEGPR-HLSVPLD-----K------------F--- 102 (219)
T ss_pred cchhhhhhhHHHHHHhhcCCccEEEEecccccccCccccc---cCCCCCe-EEEEeec-----c------------c---
Confidence 355667788887777 357899999999988777541 1122221 1111111 0 0
Q ss_pred cccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccE--
Q psy1765 264 LHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSR-- 341 (867)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~-- 341 (867)
.++ .| .+.+.||+++++|+.|.+|+|||+.|..||+||.||+.|++.+|.++...+.+.
T Consensus 103 -~~~----------------lp--y~~~~Gg~~~~~k~~f~~VNGf~n~f~GWGgEDdd~~~Rl~~~g~~~~r~~~~~~~ 163 (219)
T cd00899 103 -HYK----------------LP--YKTYFGGVLALTREQFRKVNGFSNAYWGWGGEDDDLYNRIKAAGLKITRPSGDTGR 163 (219)
T ss_pred -ccc----------------cC--cccccccceeeEHHHHHHhCCcCCcCccCCcchHHHHHHHHHCCCeEEeccCcccc
Confidence 000 11 134578999999999999999999999999999999999999999999888643
Q ss_pred EEEEeccC
Q psy1765 342 IGHVFRSR 349 (867)
Q Consensus 342 V~H~~r~~ 349 (867)
+.|++...
T Consensus 164 ~~hL~H~~ 171 (219)
T cd00899 164 YKMIRHIH 171 (219)
T ss_pred eeeeecCC
Confidence 56665443
No 72
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=99.15 E-value=9e-11 Score=108.06 Aligned_cols=87 Identities=17% Similarity=0.244 Sum_probs=70.0
Q ss_pred CCccEEEcc----CCcEE---eccCceeeeC------CCCcEEEecCCCCCCCeEEEec--CCeeeeecCCCCceeecCC
Q psy1765 711 KTQRWSKTD----KSELV---LAELLCLDAG------ATKPKLTKCHEMGGSQEWNFVL--RDKTPIYSPATGTCLGSKN 775 (867)
Q Consensus 711 ~~Q~W~~~~----~~~~~---~~s~~CLD~~------g~~v~~~~C~~~~~~Q~W~~~~--~~~~~i~n~~sg~CLd~~~ 775 (867)
++|+|+|.. .+... ..+++|||+. |+.|++++|++. .+|+|.+.. ++.+.|.+..+++|||+.+
T Consensus 1 ~nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~~-~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~ 79 (105)
T PF14200_consen 1 DNQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNGN-DNQQWKIEPVGDGYYRIRNKNSGKVLDVAG 79 (105)
T ss_dssp CGGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSSS-GGGEEEEEESTTSEEEEEETSTTEEEEEGG
T ss_pred CCCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCCC-cCcEEEEEEecCCeEEEEECCCCcEEEECC
Confidence 479999986 33332 3479999986 448999999984 599999874 4556799999999999976
Q ss_pred CCC--CCeEEEEec-CCCCCceEEEe
Q psy1765 776 RLE--NTVIVMEMC-AQHKDTSWDLV 798 (867)
Q Consensus 776 ~~~--g~~v~~~~C-~~~~~Q~W~~~ 798 (867)
.++ |+.|.+|+| +++++|+|.|+
T Consensus 80 ~~~~~g~~v~~~~~~~~~~~Q~W~l~ 105 (105)
T PF14200_consen 80 GSTANGTNVQQWEYDNGSDNQQWKLE 105 (105)
T ss_dssp GSSSTTEBEEEEE-STSSGGGEEEEE
T ss_pred CCCCCCCEEEEEeCCCCCccCEEEeC
Confidence 544 999999999 88999999984
No 73
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=99.05 E-value=5.9e-10 Score=113.87 Aligned_cols=124 Identities=16% Similarity=0.232 Sum_probs=81.0
Q ss_pred EEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCc
Q psy1765 206 VLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKP 285 (867)
Q Consensus 206 ~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p 285 (867)
||+++|+|+.++|++++.++..+.++..+++.+.+...+..++.. ....+.+..... ... ......
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~~~~~~~vq~~~~~~~~~~~~~-----~~~~~~~~~~~~----~~~-----~~~~~~ 66 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALEDPKVDAVQGPIIFRNRGSLLT-----RLQDFEYAISHG----LSR-----LSQSSL 66 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHhCCCceEEEccEEecCCCChhh-----eeehhhhhhhhh----hhH-----HHHHhc
Confidence 689999999999999999999999434455544443222111100 000110000000 000 000011
Q ss_pred ccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEE
Q psy1765 286 ILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHV 345 (867)
Q Consensus 286 ~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~ 345 (867)
.....+.|+++++|+++++++|||| ..... +||.|+++|++++|+++.++|++.++|.
T Consensus 67 ~~~~~~~G~~~~~r~~~l~~vg~~~-~~~~~-~ED~~l~~~l~~~G~~~~~~~~~~~~~~ 124 (193)
T PF13632_consen 67 GRPLFLSGSGMLFRREALREVGGFD-DPFSI-GEDMDLGFRLRRAGYRIVYVPDAIVYTE 124 (193)
T ss_pred CCCccccCcceeeeHHHHHHhCccc-ccccc-cchHHHHHHHHHCCCEEEEecccceeee
Confidence 2334577999999999999999999 44444 7999999999999999999999977664
No 74
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=99.00 E-value=4e-09 Score=115.65 Aligned_cols=183 Identities=15% Similarity=0.121 Sum_probs=117.1
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhc--CccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHHh
Q psy1765 54 TSVIICFYNEHPATLYRSVQTLLSR--TGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRAR 131 (867)
Q Consensus 54 vSVIIp~yNe~~~~l~~~l~Svl~q--t~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a~ 131 (867)
+.|||++||.+. .|.+||+||+++ +.... ||||++||+.++. .+.++
T Consensus 2 ~PVlv~ayNRp~-~l~r~LesLl~~~p~~~~~--~liIs~DG~~~~~------~~~v~---------------------- 50 (334)
T cd02514 2 IPVLVIACNRPD-YLRRMLDSLLSYRPSAEKF--PIIVSQDGGYEEV------ADVAK---------------------- 50 (334)
T ss_pred cCEEEEecCCHH-HHHHHHHHHHhccccCCCc--eEEEEeCCCchHH------HHHHH----------------------
Confidence 579999999655 999999999998 44455 9999999987651 11111
Q ss_pred hhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcC--------------CCcCchh----
Q psy1765 132 MFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTS--------------KREGLIR---- 193 (867)
Q Consensus 132 ~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~--------------~n~G~a~---- 193 (867)
.+. ..|+++.+. .-.+++.
T Consensus 51 --------------------------------------~~~-----~~i~~i~~~~~~~~~~~~~~~~~~y~~ia~hyk~ 87 (334)
T cd02514 51 --------------------------------------SFG-----DGVTHIQHPPISIKNVNPPHKFQGYYRIARHYKW 87 (334)
T ss_pred --------------------------------------hhc-----cccEEEEcccccccccCcccccchhhHHHHHHHH
Confidence 110 122233221 1134555
Q ss_pred HHhHhhhhcCCCEEEEEcCCcccCcc---chHHHHHHHHhcCCc-eeeeEEeeecCCCceeccccccccccccccccccc
Q psy1765 194 ARMFGAKYATGKVLVFLDSHIEVNTH---WLEPLLVPIAERTNT-VTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWE 269 (867)
Q Consensus 194 ArN~G~~~A~Gd~llfLDaD~~v~p~---wLe~Ll~~l~~~~~~-vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~ 269 (867)
|+|.++..+.++++++|+.|+++.|+ +++.++..++.++.. +|++..+ .+ . . .
T Consensus 88 aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~~ISa~Nd----nG------------~------~-~ 144 (334)
T cd02514 88 ALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLWCISAWND----NG------------K------E-H 144 (334)
T ss_pred HHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEEEEEeecc----CC------------c------c-c
Confidence 99999999999999999999999999 557788888877653 3333211 00 0 0 0
Q ss_pred cCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHH--HHcCCeEEEEcccEEEEEe
Q psy1765 270 NLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRI--WMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 270 ~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl--~~~G~~i~~~P~s~V~H~~ 346 (867)
... ..+..-+++..+.|...|++|+.|+++ ++.+. .-|.|+.+|. .+.|-.++.=--+|++|..
T Consensus 145 -~~~------~~~~~lyrs~ff~glGWml~r~~W~e~---~~~wp---~~~WD~w~R~~~~rkgr~cirPeisRt~~~g 210 (334)
T cd02514 145 -FVD------DTPSLLYRTDFFPGLGWMLTRKLWKEL---EPKWP---KAFWDDWMRLPEQRKGRECIRPEISRTYHFG 210 (334)
T ss_pred -ccC------CCcceEEEecCCCchHHHHHHHHHHHh---CCCCC---CCChHHhhcchhhhcCCccccCCcchheecc
Confidence 000 001122455667777789999999997 66443 3599999995 3455444433335777765
No 75
>KOG2977|consensus
Probab=98.97 E-value=3.5e-09 Score=109.61 Aligned_cols=169 Identities=20% Similarity=0.171 Sum_probs=93.3
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcc--cC-ccchHHHH
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIE--VN-THWLEPLL 225 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~--v~-p~wLe~Ll 225 (867)
+|||||||||+| .+.+...++..++...+++++...+|.|.++|.-.|+.+++|++++|.|||-- ++ -..|+..+
T Consensus 105 ~eiiVvddgs~d--~T~~~a~k~s~K~~~d~irV~~l~~nrgKGgAvR~g~l~~rG~~ilfadAdGaTkf~d~ekLe~al 182 (323)
T KOG2977|consen 105 YEIIVVDDGSTD--STVEVALKFSRKLGDDNIRVIKLKKNRGKGGAVRKGMLSSRGQKILFADADGATKFADLEKLEKAL 182 (323)
T ss_pred eeEEEeCCCCch--hHHHHHHHHHHHcCcceEEEeehhccCCCCcceehhhHhccCceEEEEcCCCCccCCCHHHHHHHH
Confidence 344444444444 34555566665565679999999999999999999999999999999999954 43 34555555
Q ss_pred HHHHh-c-CCceeeeEEeeecCCCceecccccccccc----ccccccccccCCcCcCCCCCCCCCcccccccccceEeEe
Q psy1765 226 VPIAE-R-TNTVTVPIIDIINADTFQYTSSALVRGGF----NWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAID 299 (867)
Q Consensus 226 ~~l~~-~-~~~vv~p~i~~i~~~~~~~~~~~~~~g~f----~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~air 299 (867)
..... . ...++++.-. .++.......+..+ -..+|+.-.......+. .+- .++.++.
T Consensus 183 ~~~~~p~~r~~va~Gsra-----hLe~~~a~a~rs~~r~iLM~gFH~lv~~~a~rsI~-----------DTQ-cgfklft 245 (323)
T KOG2977|consen 183 NDKAGPGPRDDVACGSRA-----HLENTEAVAKRSVIRNILMYGFHKLVWIFAIRSIR-----------DTQ-CGFKLFT 245 (323)
T ss_pred HhhcCCCCCCceeecCHH-----HhhccHHHHHHhHhhHHHHHHHHHHHHHHhcCccc-----------ccc-hhHHHhH
Confidence 55442 2 2233333211 11110000000000 00011100000000010 111 2567888
Q ss_pred HHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEc
Q psy1765 300 RQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIP 338 (867)
Q Consensus 300 R~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P 338 (867)
|....++-.++ .+..| .-|+|+-+=...-+..+..+|
T Consensus 246 R~aa~~if~~l-h~e~W-~fdvEll~La~~~~ipi~ei~ 282 (323)
T KOG2977|consen 246 RAAARRIFPWL-HVERW-AFDVELLYLAKRFTIPIKEIP 282 (323)
T ss_pred HHHHHhhcchh-heeee-eccHHHHHHHHHcCCCcEEee
Confidence 88888886654 45667 668887766666666666555
No 76
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=98.94 E-value=1.2e-09 Score=110.15 Aligned_cols=142 Identities=20% Similarity=0.245 Sum_probs=96.3
Q ss_pred EEEcCCCcC---chhHHhHhhhh-cCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccc
Q psy1765 182 LYRTSKREG---LIRARMFGAKY-ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVR 257 (867)
Q Consensus 182 ii~~~~n~G---~a~ArN~G~~~-A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~ 257 (867)
++..+...| ++.....|+++ |++|+|+|+|+|+.++|+||..|+..+.+...++|+......+.+++.-.- ..
T Consensus 6 lvv~~~~~g~N~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vglVt~~~~~~~~~~~~~~l---~~ 82 (175)
T PF13506_consen 6 LVVGGPPRGCNPKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGLVTGLPRGVPARGFWSRL---EA 82 (175)
T ss_pred EEECCCCCCCChHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcEEEecccccCCcCHHHHH---HH
Confidence 554444444 44566677888 999999999999999999999999999886667776533333233221100 00
Q ss_pred cccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEE
Q psy1765 258 GGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMI 337 (867)
Q Consensus 258 g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~ 337 (867)
..+ ..... .... .-..+...|++|++||+.|+++|||+.--. +-.||+.++.++++.|+++...
T Consensus 83 ~~~--~~~~~-------~~~a------~~~~~~~~G~~m~~rr~~L~~~GG~~~l~~-~ladD~~l~~~~~~~G~~v~~~ 146 (175)
T PF13506_consen 83 AFF--NFLPG-------VLQA------LGGAPFAWGGSMAFRREALEEIGGFEALAD-YLADDYALGRRLRARGYRVVLS 146 (175)
T ss_pred HHH--hHHHH-------HHHH------hcCCCceecceeeeEHHHHHHcccHHHHhh-hhhHHHHHHHHHHHCCCeEEEc
Confidence 001 00000 0000 013457889999999999999999987222 2289999999999999999999
Q ss_pred cccEE
Q psy1765 338 PCSRI 342 (867)
Q Consensus 338 P~s~V 342 (867)
|...+
T Consensus 147 ~~~v~ 151 (175)
T PF13506_consen 147 PYPVV 151 (175)
T ss_pred chhee
Confidence 96644
No 77
>PF01585 G-patch: G-patch domain; InterPro: IPR000467 The D111/G-patch domain [] is a short conserved region of about 40 amino acids which occurs in a number of putative RNA-binding proteins, including tumor suppressor and DNA-damage-repair proteins, suggesting that this domain may have an RNA binding function. This domain has seven highly conserved glycines. A multiple alignment of a small subset of D111/G-patch domains is shown in Fig. 2b of [].; GO: 0003676 nucleic acid binding, 0005622 intracellular
Probab=98.94 E-value=5.2e-10 Score=85.69 Aligned_cols=38 Identities=37% Similarity=0.687 Sum_probs=34.3
Q ss_pred CcchHHHHHHhcCCCCCccCCCCCCCCcccccccccccccc
Q psy1765 820 NENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGLYYDE 860 (867)
Q Consensus 820 ~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~~~~~ 860 (867)
++|+|++||+||||+||+|||+.. +|+++||....+..
T Consensus 1 t~~~g~~lm~kmGw~~G~GLGk~~---~G~~~pi~~~~~~~ 38 (45)
T PF01585_consen 1 TSSIGFKLMKKMGWKPGQGLGKNG---QGIAEPIEVKKKKD 38 (45)
T ss_pred CCcHHHHHHHHCCCCCCcCCCcCC---ccCCcceEEeeEcC
Confidence 479999999999999999999999 89999998876653
No 78
>PF02709 Glyco_transf_7C: N-terminal domain of galactosyltransferase; InterPro: IPR003859 This is a family of galactosyltransferases from a wide range of metazoa with three related galactosyltransferase activities; all three of which are possessed by one sequence in some cases. The three functions are N-acetyllactosamine synthase (2.4.1.90 from EC); beta-N-acetylglucosaminyl-glycopeptide beta-1,4-galactosyltransferase (2.4.1.38 from EC); and lactose synthase (2.4.1.22 from EC). Note that N-acetyllactosamine synthase is a component of lactose synthase along with alpha-lactalbumin, in the absence of alpha-lactalbumin N-acetyllactosamine synthase is used.; GO: 0016757 transferase activity, transferring glycosyl groups, 0005975 carbohydrate metabolic process; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=98.92 E-value=7.4e-10 Score=95.70 Aligned_cols=60 Identities=33% Similarity=0.669 Sum_probs=46.2
Q ss_pred ccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEE-EEEec
Q psy1765 288 SPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRI-GHVFR 347 (867)
Q Consensus 288 ~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V-~H~~r 347 (867)
.+.+.||+++++|+.|.+||||||.|..||+||.||+.|++.+|.++..+|.+.+ +|.++
T Consensus 16 ~~~~~Gg~~~~~~~~f~~vnGfde~f~gWG~ED~Dl~~Rl~~~g~~~~~~~~~~~~yh~~~ 76 (78)
T PF02709_consen 16 YPNFFGGVFAISREDFEKVNGFDERFWGWGGEDDDLYNRLWKAGLKIVRVPGSIGRYHLWK 76 (78)
T ss_dssp STT---SEEEEEHHHHHHTTSS-SS-TSCSSHHHHHHHHHHHTT---B-SSTTTTEEEEEE
T ss_pred CCCeeEEEEEEeHHHHHHcCCCCccccccCccHHHHHHHHHHcCCeEEecCCceEEEEEee
Confidence 3577899999999999999999999999999999999999999999998887766 58774
No 79
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=98.92 E-value=9.1e-09 Score=105.06 Aligned_cols=141 Identities=18% Similarity=0.305 Sum_probs=80.5
Q ss_pred hhHHhHhhhhcC----CCEEEEEcCCcccCccchHHHHHHH-----HhcC-CceeeeEEeeecCCCceeccccccccccc
Q psy1765 192 IRARMFGAKYAT----GKVLVFLDSHIEVNTHWLEPLLVPI-----AERT-NTVTVPIIDIINADTFQYTSSALVRGGFN 261 (867)
Q Consensus 192 a~ArN~G~~~A~----Gd~llfLDaD~~v~p~wLe~Ll~~l-----~~~~-~~vv~p~i~~i~~~~~~~~~~~~~~g~f~ 261 (867)
+..+|.|+.+|- .++|+|||.||..+.+-.+.++..+ ..+- +-.|.|+...-..++....... ..|
T Consensus 79 ~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~dnF~k~l~~~~ikk~~tnI~a~~vlPV~~LNk~~~~v~f~~~---d~f- 154 (346)
T COG4092 79 TICANNGADYSHEKCESNLVLFLDVDCFGSSDNFAKMLSIATIKKMRTNIDAPLVLPVYHLNKADTQVFFDVE---DMF- 154 (346)
T ss_pred hhhhhccchhhhccccccEEEEEeccccccHHHHHHHHHHHHHHHHHhccCcceeeeeeecchhhhhHHHHHH---HHh-
Confidence 467888888886 9999999999999866666666443 2332 2345665432111111110000 000
Q ss_pred cccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccE
Q psy1765 262 WGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSR 341 (867)
Q Consensus 262 ~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~ 341 (867)
|.+......+ .+...... +-.+ ...+.++|.|..|...|||||+|..+|.||+|+.-|+... +...|-..
T Consensus 155 ~d~~i~es~~--~~~~~~~~----ff~~-~~T~~~liN~~~F~~tgGydE~F~GhG~EDfe~~~R~~l~---~~~~p~~~ 224 (346)
T COG4092 155 LDAMIFESPL--AEFRKEDN----FFIA-PYTNIFLINRRMFSLTGGYDERFRGHGSEDFEFLTRLGLY---IKNLPMLT 224 (346)
T ss_pred hhhHhhhhHH--HHhCcccc----cccc-cccceEEEehhHHHHhcCCccccccCCchhHHHHHHHHHH---Hhcccccc
Confidence 1110000000 00000011 1112 2246789999999999999999999999999999998654 34455444
Q ss_pred EEEEe
Q psy1765 342 IGHVF 346 (867)
Q Consensus 342 V~H~~ 346 (867)
--|.+
T Consensus 225 ~nh~y 229 (346)
T COG4092 225 KNHLY 229 (346)
T ss_pred ccccc
Confidence 44544
No 80
>PF14200 RicinB_lectin_2: Ricin-type beta-trefoil lectin domain-like; PDB: 2X2S_C 2X2T_A 2VSE_B 2VSA_A 3EF2_A 2IHO_A 3HZB_H 1YBI_B 3PHZ_A 3NBE_A ....
Probab=98.87 E-value=3.9e-09 Score=97.14 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCcccccccc-cccceEEEecCCCceEee-cCCCCCCCceEEecCCCCCCCccEEEccCC--cEE---eccCceeeeC--
Q psy1765 664 FQPWYSRARN-YTSHFHIRLSGTDLCLTS-KVDKTKGSPLVLKKCDELSKTQRWSKTDKS--ELV---LAELLCLDAG-- 734 (867)
Q Consensus 664 ~q~W~~~~~~-~~~~~~i~~~~sg~CLd~-~~~~~~g~~v~l~~C~~~~~~Q~W~~~~~~--~~~---~~s~~CLD~~-- 734 (867)
.|+|.+.... ....+.|++..+|+||++ +....+|+.|++++|++ ..+|+|.+...+ ... ..+++|||+.
T Consensus 2 nQ~W~~~~~~~~~g~Y~i~n~~sg~~L~v~~~~~~~g~~v~~~~~~~-~~~Q~W~i~~~~~g~y~I~n~~s~~~Ldv~~~ 80 (105)
T PF14200_consen 2 NQQWTFTPVGDSDGYYKIRNVNSGKYLDVAGGSTANGTNVQQWTCNG-NDNQQWKIEPVGDGYYRIRNKNSGKVLDVAGG 80 (105)
T ss_dssp GGEEEEEEEETTTTEEEEEETTTTEEEEEGCTTCSTTEBEEEEESSS-SGGGEEEEEESTTSEEEEEETSTTEEEEEGGG
T ss_pred CCEEEEEEecCCCCEEEEEECCCCCEEEeCCCCcCCCcEEEEecCCC-CcCcEEEEEEecCCeEEEEECCCCcEEEECCC
Confidence 5778776621 233578999999999999 44567889999999999 899999998633 222 3479999985
Q ss_pred ----CCCcEEEec-CCCCCCCeEEEe
Q psy1765 735 ----ATKPKLTKC-HEMGGSQEWNFV 755 (867)
Q Consensus 735 ----g~~v~~~~C-~~~~~~Q~W~~~ 755 (867)
|+.|++|+| ++ ..+|+|.|.
T Consensus 81 ~~~~g~~v~~~~~~~~-~~~Q~W~l~ 105 (105)
T PF14200_consen 81 STANGTNVQQWEYDNG-SDNQQWKLE 105 (105)
T ss_dssp SSSTTEBEEEEE-STS-SGGGEEEEE
T ss_pred CCCCCCEEEEEeCCCC-CccCEEEeC
Confidence 568999999 65 469999973
No 81
>KOG3588|consensus
Probab=98.77 E-value=1.8e-07 Score=99.69 Aligned_cols=218 Identities=18% Similarity=0.185 Sum_probs=142.5
Q ss_pred CCCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhh
Q psy1765 48 PSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGL 127 (867)
Q Consensus 48 ~~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi 127 (867)
+-..|.|.+|+|...+.. .+.+...++......++ +++||==+++.+.
T Consensus 225 ~i~~pgih~i~pl~gr~~-~f~rf~q~~c~~~d~~l--~l~vv~f~~se~e----------------------------- 272 (494)
T KOG3588|consen 225 LIEDPGIHMIMPLRGRAA-IFARFAQSICARGDDRL--ALSVVYFGYSEDE----------------------------- 272 (494)
T ss_pred cccCCCceEEEeccchHH-HhhhhhHHHhccCCCce--EEEEEEecCCChH-----------------------------
Confidence 345689999999999665 88888888888777777 8777765554330
Q ss_pred HHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEE
Q psy1765 128 IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVL 207 (867)
Q Consensus 128 ~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~l 207 (867)
+|. .+.+..+.+.. +++.++-....+..+.|.-.|++.-+.+.+
T Consensus 273 ---------~ak-------------------------~e~~tslra~f--~~~q~l~lngeFSRa~aL~vGAe~~~~nvL 316 (494)
T KOG3588|consen 273 ---------MAK-------------------------RETITSLRASF--IPVQFLGLNGEFSRAKALMVGAETLNANVL 316 (494)
T ss_pred ---------HHh-------------------------hhHHHHHhhcC--CceEEecccchhhhhHHHHhhHHHhcccee
Confidence 000 12334444444 577777776667888899999999877776
Q ss_pred -EEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcc
Q psy1765 208 -VFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPI 286 (867)
Q Consensus 208 -lfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~ 286 (867)
.|+|-|..+..++|++.-.-. .-...+..|++...-.....|..... +|..........+...
T Consensus 317 LFfcDVDi~FT~efL~rcr~Nt-~~gkqiyfPivFS~ynp~ivy~~~~~---------------~p~e~~~~~~~~tGfw 380 (494)
T KOG3588|consen 317 LFFCDVDIYFTTEFLNRCRLNT-ILGKQIYFPIVFSQYNPEIVYEQDKP---------------LPAEQQLVIKKDTGFW 380 (494)
T ss_pred EEEeccceeehHHHHHHHhhcc-CCCceEEEEEEEeecCcceeecCCCC---------------CchhHheeeccccccc
Confidence 467999999988887553221 12235667776443222222211100 0000000000000000
Q ss_pred cccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEEEeccCCC
Q psy1765 287 LSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRP 351 (867)
Q Consensus 287 ~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~r~~~~ 351 (867)
+. .. -|.-.+-|+.|..|||||..+..||+||+||--+..+.|.+++-+|..-+.|+|...+-
T Consensus 381 Rd-fG-fGmtc~yrsd~~~vgGFD~~I~GWG~EDV~Ly~K~v~~~l~viR~p~pGl~H~~H~~~C 443 (494)
T KOG3588|consen 381 RD-FG-FGMTCQYRSDFLTVGGFDMEIKGWGGEDVDLYRKYVHSGLKVIRTPEPGLFHLWHPKRC 443 (494)
T ss_pred cc-cC-CceeEEeeccceeecCcceeeeccCcchHHHHHHHHhcCcEEEecCCCceEEeeccccc
Confidence 10 11 13446679999999999999999999999999999999999999999999999976553
No 82
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=98.64 E-value=3.7e-09 Score=116.03 Aligned_cols=58 Identities=69% Similarity=1.190 Sum_probs=55.2
Q ss_pred cccCceeEEEeecchhhhhhhccCcccCCCCccCCchhHhhhhhcccccccccccccc
Q psy1765 452 NYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVY 509 (867)
Q Consensus 452 ~~~N~~R~aeVWmDeyk~~~y~~~p~~~~~~~gdis~r~~LR~~l~CksF~Wyl~nv~ 509 (867)
..+|.+|.+++|||+|++++|+.+|+++.++.||+++|++++++|+||+|+||++.++
T Consensus 242 ~~~n~~r~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~ 299 (299)
T cd02510 242 VLRNYKRVAEVWMDEYKEYFYKARPELRNIDYGDLSERKALRERLKCKSFKWYLENVY 299 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCHHHHHHHHHHcCCCCchHHHhhcC
Confidence 4679999999999999999999999999999999999999999999999999999764
No 83
>smart00443 G_patch glycine rich nucleic binding domain. A predicted glycine rich nucleic binding domain found in the splicing factor 45, SON DNA binding protein and D-type Retrovirus- polyproteins.
Probab=98.64 E-value=1.8e-08 Score=78.33 Aligned_cols=37 Identities=43% Similarity=0.816 Sum_probs=33.3
Q ss_pred CCcchHHHHHHhcCCCCCccCCCCCCCCcccccccccccc
Q psy1765 819 PNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGLYY 858 (867)
Q Consensus 819 ~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~~~ 858 (867)
..+|+|++||+||||++|+|||++. +|+++||.....
T Consensus 2 ~~~~~g~~~l~~mGw~~G~GLG~~~---~g~~~pi~~~~~ 38 (47)
T smart00443 2 STSNIGYKLLRKMGWKEGQGLGKNE---QGIVEPISAEIK 38 (47)
T ss_pred CcccHHHHHHHHcCCCCCCcCCCCC---CcCccceeEeec
Confidence 5689999999999999999999998 899999976544
No 84
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=98.56 E-value=3.7e-06 Score=98.38 Aligned_cols=165 Identities=16% Similarity=0.218 Sum_probs=111.3
Q ss_pred hHHHHHHHhhcCCCCEEEEEcC-CCcCchhHHhHhhhhcC-CCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEee
Q psy1765 165 HGEVESFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDI 242 (867)
Q Consensus 165 ~~~l~~~~~~~~~~~vrii~~~-~n~G~a~ArN~G~~~A~-Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~ 242 (867)
++.+.++..++...++.+|... +.+-.+.|...|++... .++++|+|.|..+++++|.+.-..-.. ..-|..|++-.
T Consensus 301 k~~l~~l~~k~~~~~i~~i~~~~~~fsr~~~Ld~g~~~~~~d~L~f~~Dvd~~f~~~fL~rcR~nti~-g~qvy~PI~Fs 379 (499)
T PF05679_consen 301 KELLEELERKYPFSRIKWISVKTGEFSRGAALDVGAKKFPPDSLLFFCDVDMVFTSDFLNRCRMNTIP-GKQVYFPIVFS 379 (499)
T ss_pred HHHHHHHHHhCCccceEEEEecCCCccHHHHHHhhcccCCCCcEEEEEeCCcccCHHHHHHHHHhhhc-CcEEEEeeecc
Confidence 3455666555545689999988 88889999999998664 567788899999999999877554332 23466776632
Q ss_pred -ecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHh--CCCCCCCCCCccc
Q psy1765 243 -INADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSL--GQYDAGLEIWGGE 319 (867)
Q Consensus 243 -i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~v--GgfDe~~~~~G~E 319 (867)
.+++ ..|...+.....+ .+. ....-.+. ..-+.+++=++.|.++ ||||.....||+|
T Consensus 380 ~y~p~-~~~~~~~~~~~~~--------------~i~---~~~G~w~~--~gfg~~~~YksDy~~~~~~~~~~~~~gwg~E 439 (499)
T PF05679_consen 380 QYNPD-IVYAGKPPEPDQF--------------DIS---KDTGFWRR--FGFGMVCFYKSDYMRIRGGGFDLSIRGWGGE 439 (499)
T ss_pred ccCCc-ccccCCCCccccC--------------ccC---CCCCcccc--CCCceEEEEhhhhhhhccccccccccccccc
Confidence 1221 1111100000000 000 00000111 1125678889999999 9999999999999
Q ss_pred chHHHHHHHHcC--CeEEEEcccEEEEEeccCC
Q psy1765 320 NLELSFRIWMCG--GSLAMIPCSRIGHVFRSRR 350 (867)
Q Consensus 320 D~Dls~Rl~~~G--~~i~~~P~s~V~H~~r~~~ 350 (867)
|+||.-++.+.| ..|.-.|+.-+.|+|+.++
T Consensus 440 D~~l~~~~l~~~~~l~V~Ra~ep~L~h~yh~~~ 472 (499)
T PF05679_consen 440 DVDLYDKFLKSGHKLHVFRAVEPGLVHRYHPKH 472 (499)
T ss_pred HHHHHHHHHhCCCceEEEEccCCCeEEEecccC
Confidence 999999999999 8898899999999996654
No 85
>KOG0965|consensus
Probab=98.52 E-value=3.4e-08 Score=112.61 Aligned_cols=41 Identities=37% Similarity=0.683 Sum_probs=36.8
Q ss_pred hhcccCCCCcchHHHHHHhcCCCCCccCCCCCCCCccccccccc
Q psy1765 812 AHMEESIPNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELG 855 (867)
Q Consensus 812 a~~~~~~~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~ 855 (867)
+.-+..|..+|+|||||+|||||+|+|||..+ +||.+||+.
T Consensus 897 dyke~KLt~dNiGfQMLqKMGWKEGeGLGS~g---kGI~dPVnk 937 (988)
T KOG0965|consen 897 DYKEQKLTDDNIGFQMLQKMGWKEGEGLGSLG---KGIRDPVNK 937 (988)
T ss_pred HHHHhhccccchHHHHHHHhCccccccccccC---cccccchhh
Confidence 34445689999999999999999999999999 899999985
No 86
>KOG3916|consensus
Probab=98.48 E-value=1.3e-06 Score=92.98 Aligned_cols=54 Identities=26% Similarity=0.527 Sum_probs=46.4
Q ss_pred ccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEcccEEEE
Q psy1765 290 TMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGH 344 (867)
Q Consensus 290 ~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H 344 (867)
.+.||..++.++-|.+|.||...|..|||||-|+.-|+..+|++|-- |...+++
T Consensus 259 ~~FGGVsalt~~qf~kINGFsN~fWGWGGEDDDl~nRv~~ag~~IsR-p~~~igr 312 (372)
T KOG3916|consen 259 EYFGGVSALTKEQFRKINGFSNAFWGWGGEDDDLWNRVQLAGMKISR-PPPEIGR 312 (372)
T ss_pred hhhCchhhccHHHHHHhcCCCchhcccCCcchHHHHHHHhcCceeec-CCCccce
Confidence 45588899999999999999999999999999999999999999853 3344444
No 87
>KOG2547|consensus
Probab=98.32 E-value=4.4e-06 Score=89.92 Aligned_cols=202 Identities=17% Similarity=0.185 Sum_probs=135.9
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
..+|.||||.|.-.... .+..-++|.....|+.+ |++.+-+.++|+.
T Consensus 82 ~~LPgVSiikPl~G~d~-nl~~Nlesffts~Y~~~--ElLfcv~s~eDpA------------------------------ 128 (431)
T KOG2547|consen 82 PKLPGVSIIKPLKGVDP-NLYHNLESFFTSQYHKY--ELLFCVESSEDPA------------------------------ 128 (431)
T ss_pred CCCCCceEEeecccCCc-hhHHhHHHHHhhccCce--EEEEEEccCCCcH------------------------------
Confidence 37899999999988655 89999999999999877 9999998888882
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchh---HHhHhhhhcCCC
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIR---ARMFGAKYATGK 205 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~---ArN~G~~~A~Gd 205 (867)
.+.++..+++++.-..+++-..+..|+.- ...-|.+.|+.|
T Consensus 129 ------------------------------------i~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mpgy~~a~yd 172 (431)
T KOG2547|consen 129 ------------------------------------IEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMPGYRAAKYD 172 (431)
T ss_pred ------------------------------------HHHHHHHHhhCCCcceEEEEcccccccChhhhccCHHHHHhcCC
Confidence 34566777777444668888777777653 333789999999
Q ss_pred EEEEEcCCcccCccchHHHHHHHHhcCCc-eeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCC
Q psy1765 206 VLVFLDSHIEVNTHWLEPLLVPIAERTNT-VTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIK 284 (867)
Q Consensus 206 ~llfLDaD~~v~p~wLe~Ll~~l~~~~~~-vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~ 284 (867)
+|+|.|+|+.+.||-+-.|...+..+... .|...-... .++||+-.+...+....+..+- ...
T Consensus 173 lvlisDsgI~m~pdtildm~t~M~shekmalvtq~py~~------------dr~Gf~atle~~~fgTsh~r~y----l~~ 236 (431)
T KOG2547|consen 173 LVLISDSGIFMKPDTILDMATTMMSHEKMALVTQTPYCK------------DRQGFDATLEQVYFGTSHPRIY----LSG 236 (431)
T ss_pred EEEEecCCeeecCchHHHHHHhhhcccceeeecCCceee------------ccccchhhhhheeeccCCceEE----Ecc
Confidence 99999999999999999999999876653 332211111 2233333222111111000000 000
Q ss_pred cc-cccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEE
Q psy1765 285 PI-LSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAM 336 (867)
Q Consensus 285 p~-~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~ 336 (867)
+. .....+|-.-++||++|++.||+- .+.-|-.||+=+.--+...|++..+
T Consensus 237 n~~~~~c~tgms~~mrK~~ld~~ggi~-~f~~yLaedyFaaksllSRG~ksai 288 (431)
T KOG2547|consen 237 NVLGFNCSTGMSSMMRKEALDECGGIS-AFGGYLAEDYFAAKSLLSRGWKSAI 288 (431)
T ss_pred ccccccccccHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 00 112233444578999999999984 4444446888888778888887543
No 88
>PF11397 GlcNAc: Glycosyltransferase (GlcNAc); InterPro: IPR021067 GlcNAc is an enzyme that carries out the first glycosylation step of hydroxylated Skp1; it is found in the cytoplasm and results in a pentasaccharide-linked 'HyPro-143[, ].
Probab=97.98 E-value=0.00024 Score=78.78 Aligned_cols=166 Identities=17% Similarity=0.252 Sum_probs=104.3
Q ss_pred CCEEEEEcC--CCcCchhHHhHhhhhcCC-CEEEEEcCCcccCccchHHHHHHHHhc--CCceeeeEEeeecC--CCcee
Q psy1765 178 GRVHLYRTS--KREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAER--TNTVTVPIIDIINA--DTFQY 250 (867)
Q Consensus 178 ~~vrii~~~--~n~G~a~ArN~G~~~A~G-d~llfLDaD~~v~p~wLe~Ll~~l~~~--~~~vv~p~i~~i~~--~~~~~ 250 (867)
..|++++.+ +-.|...||+.+-+.-.| +|++-+|+|+.+.++|-+.|++.+..- +..|++.....++. .....
T Consensus 88 ~~Ir~~~~~~~~a~Gp~~AR~la~~l~~gE~y~LqiDSH~rF~~~WD~~li~~~~~~~~~~aVLS~YP~~~~~~~~~~~~ 167 (343)
T PF11397_consen 88 DQIRVIRVDASEARGPCWARYLAQKLYRGEDYYLQIDSHMRFVPGWDEILIEMLKSLRNPKAVLSTYPPGYEPDGGQPEP 167 (343)
T ss_pred CeEEEEEeCHHHCcChHHHHHHHHHHhCCCeEEEEEeccceeeccHHHHHHHHHHhcCCCCeEEecCCCCcccccCCccc
Confidence 467776654 568999999999887765 789999999999999999999999864 33444322111111 00000
Q ss_pred ccc---cccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCC--CCCcccchHHHH
Q psy1765 251 TSS---ALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGL--EIWGGENLELSF 325 (867)
Q Consensus 251 ~~~---~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~--~~~G~ED~Dls~ 325 (867)
... ......|.-.-. ..+....+........|...+..++|+++-+-.+..+| .||+.+ ... ||++-++.
T Consensus 168 ~~~~~~~lc~~~~~~~g~---~~~~~~~~~~~~~~~~P~~~~f~aaGF~Fa~~~~~~eV-P~DP~lp~lF~-GEE~~~aa 242 (343)
T PF11397_consen 168 EKTTVPRLCAARFGPDGM---VRLGARWIKPAPKLEEPVPQPFWAAGFSFAPGHFVREV-PYDPHLPFLFD-GEEISMAA 242 (343)
T ss_pred cCCcccEEEEeEECCCCc---EeecceecccccccCCCeeeceecccEEEcchhheecC-CCCCCcccccc-cHHHHHHH
Confidence 000 011111110000 00011111111223356777777777665566655555 799987 434 89999999
Q ss_pred HHHHcCCeEEEEcccEEEEEecc
Q psy1765 326 RIWMCGGSLAMIPCSRIGHVFRS 348 (867)
Q Consensus 326 Rl~~~G~~i~~~P~s~V~H~~r~ 348 (867)
|+|-.||-+..-+.+.++|.|..
T Consensus 243 RlwT~GYD~Y~P~~~v~~H~Y~r 265 (343)
T PF11397_consen 243 RLWTHGYDFYSPTRNVLFHLYSR 265 (343)
T ss_pred HHHHcCCccccCCCceeEEEccC
Confidence 99999999988888899999863
No 89
>KOG1994|consensus
Probab=97.89 E-value=4.4e-06 Score=83.34 Aligned_cols=38 Identities=34% Similarity=0.590 Sum_probs=32.1
Q ss_pred CCCCcchHHHHHHhcCCCCCccCCCCCCCCcccccccc
Q psy1765 817 SIPNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPEL 854 (867)
Q Consensus 817 ~~~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~ 854 (867)
+|.++|+||++|++||||||..|||++.+..-|+|||-
T Consensus 77 ~i~~e~~gf~lm~~Mg~kpg~~lgkq~e~~~~r~epI~ 114 (268)
T KOG1994|consen 77 GIRAEKPGFSLMNDMGMKPGRFLGKQSEMKNKRLEPIW 114 (268)
T ss_pred cccccCcChHHHHHhCCCccchhcccccccccccccee
Confidence 36699999999999999999999999832234999984
No 90
>PLN02893 Cellulose synthase-like protein
Probab=97.89 E-value=0.00013 Score=86.86 Aligned_cols=171 Identities=13% Similarity=0.150 Sum_probs=101.0
Q ss_pred CCCCcEEEEEEe---CCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchh--hHHHHHh---------hcC-C
Q psy1765 49 STLPSTSVIICF---YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG--EVETFVK---------GLN-D 113 (867)
Q Consensus 49 ~~~P~vSVIIp~---yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~--~~~~~~~---------~~~-~ 113 (867)
+++|.|-|.|++ +.|+.-.+..|+-||++-+||.-..-+.|-|||.+.-+ +.+ |..+|++ ++. -
T Consensus 98 ~~lP~vDvfv~TaDP~~Epp~~~~ntvLSilA~dyp~~kls~YvSDDGgs~lt-~~al~Eaa~FA~~WvPFCrk~~ie~R 176 (734)
T PLN02893 98 SDYPGLDVFICTADPYKEPPMGVVNTALSVMAYDYPTEKLSVYVSDDGGSKLT-LFAFMEAAKFATHWLPFCKKNKIVER 176 (734)
T ss_pred ccCCcceeeeccCCcccCchHHHHHHHHHHHhhccCccceEEEEecCCccHHH-HHHHHHHHHHHHhhcccccccCCCcC
Confidence 569999999999 77888899999999999999876557889999876541 111 1122222 000 0
Q ss_pred CceEEEEec------cchhh------HHHhhhhhhhhccccc---------------cccce------eEEEEEeCCCCC
Q psy1765 114 GRVHLYRTS------KREGL------IRARMFGAKYATGKNR---------------IQSLL------HEIILVNDFSEY 160 (867)
Q Consensus 114 ~~~~~~~~~------~~~gi------~~a~~~g~~~a~g~~~---------------~~~~l------~EIIVVDn~Std 160 (867)
++-.|+..+ +++-+ ...|..++... |..- ..+-. -=|=|+-|++.+
T Consensus 177 ~P~~YF~~~~~~~~~e~~~~k~~Yee~k~ri~~~~~~-~~~~~~~~~~~~~~~~f~~w~~~~~~~dH~~ivqV~l~~~~~ 255 (734)
T PLN02893 177 CPEAYFSSNSHSWSPETEQIKMMYESMKVRVENVVER-GKVSTDYITCDQEREAFSRWTDKFTRQDHPTVIQVLLESGKD 255 (734)
T ss_pred CHHHHhccCCCccchHHHHHHHHHHHHHHHHHHHHhc-CcCchhhhhhcccccccccCcCCCCCCCCCceeeeeccCCCc
Confidence 111111111 11111 12222222110 1110 00000 012222233322
Q ss_pred CcCchHHHHHHHhhcCCCCEEEEEcCCC-----cCchhHHhHhhhh----cCCCEEEEEcCCccc-CccchHHHHHHHHh
Q psy1765 161 PSNLHGEVESFVKGLNNGRVHLYRTSKR-----EGLIRARMFGAKY----ATGKVLVFLDSHIEV-NTHWLEPLLVPIAE 230 (867)
Q Consensus 161 ~~~~~~~l~~~~~~~~~~~vrii~~~~n-----~G~a~ArN~G~~~----A~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~ 230 (867)
.. ++. ... |.+.++..+++ .-.++|.|.+++. ++|+||+.+|+|..+ +|+.+.+.+-.+.+
T Consensus 256 ~d-----~~g--~~l--P~lvYvsReKrp~~~Hh~KAGaLN~llrvS~~~TngpfIl~lDcD~y~n~p~~l~~amcff~D 326 (734)
T PLN02893 256 KD-----ITG--HTM--PNLIYVSREKSKNSPHHFKAGALNTLLRVSATMTNAPIILTLDCDMYSNDPQTPLRALCYLLD 326 (734)
T ss_pred cc-----hhh--ccC--CceEEEeCCCCCCCCcccccchHHHHHHhhcccCCCCEEEEecCCcCCCchhHHHHHHHHhcC
Confidence 10 111 113 88999998887 4478999999996 689999999999997 68999999888864
No 91
>PF03142 Chitin_synth_2: Chitin synthase; InterPro: IPR004835 Chitin synthase (2.4.1.16 from EC), also known as chitin-UDP acetyl-glucosaminyl transferase, is a plasma membrane-bound protein which catalyses the conversion of UDP-N-acettyl-D-glucosamine and {(1,4)-(N-acetyl- beta-D-glucosaminyl)}(N) to UDP and {(1,4)-(N-acetyl-beta-D- glucosaminyl)}(N+1). It plays a major role in cell wall biogenesis. ; GO: 0016758 transferase activity, transferring hexosyl groups
Probab=97.88 E-value=8.7e-05 Score=86.15 Aligned_cols=133 Identities=11% Similarity=0.087 Sum_probs=76.6
Q ss_pred HhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccccccCCcCc
Q psy1765 197 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGT 275 (867)
Q Consensus 197 ~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~ 275 (867)
.|+.....|||+.+|+|+.+.|+.+..|++.+.+++. +.+|+.+. ++...-.. |.......+.-...
T Consensus 195 ~g~~~~~~~~il~~DaDt~~~p~~~~~lv~~m~~d~~i~gvCG~t~-i~n~~~s~-----------~t~~Q~fEY~ish~ 262 (527)
T PF03142_consen 195 IGVDPDFYEYILMVDADTKFDPDSVNRLVDAMERDPKIGGVCGETR-IDNKGQSW-----------WTMYQVFEYAISHH 262 (527)
T ss_pred hccCccceEEEEEecCCceEcHHHHHHHHHHHcCCCCeEEEeceeE-EcCCCCCH-----------hhheeccchhHHHH
Confidence 3666667799999999999999999999999988876 55666443 22211000 00000000000000
Q ss_pred CCCCCCCCCcccccccccceEeEeHHHHHH--------------hCCCCC---------CCCCCcccchHHHHHHHHc--
Q psy1765 276 LNSSEDFIKPILSPTMAGGLFAIDRQYFDS--------------LGQYDA---------GLEIWGGENLELSFRIWMC-- 330 (867)
Q Consensus 276 ~~~~~~~~~p~~~~~~~G~~~airR~~f~~--------------vGgfDe---------~~~~~G~ED~Dls~Rl~~~-- 330 (867)
+.+... ...-.+..+.||+-++|-++... +.+|.+ .+. .-|||--||--+.+.
T Consensus 263 l~Ka~E-s~fG~VtCLPGcfsmyR~~a~~~~~~~~~p~l~~~~i~~~Y~~~~~dtlh~~nl~-~lGEDR~LttLlLk~~~ 340 (527)
T PF03142_consen 263 LQKAFE-SVFGSVTCLPGCFSMYRISALMDGDGYWVPLLISPDIIEKYSENPVDTLHQKNLL-DLGEDRWLTTLLLKQFP 340 (527)
T ss_pred HHHHHH-HHhCceeecCCcceeeeeehhccccccccccccchHHHHHHhhccchHHHHHhhh-hcchhHHHHHHHHhhCC
Confidence 000000 00113456677777777666554 112221 211 238999999777776
Q ss_pred CCeEEEEcccEEE
Q psy1765 331 GGSLAMIPCSRIG 343 (867)
Q Consensus 331 G~~i~~~P~s~V~ 343 (867)
++++.|+|.|...
T Consensus 341 ~~k~~y~~~A~a~ 353 (527)
T PF03142_consen 341 GYKTEYVPSAVAY 353 (527)
T ss_pred CceEEEccccccc
Confidence 7899999988654
No 92
>KOG2184|consensus
Probab=97.50 E-value=4.7e-05 Score=89.82 Aligned_cols=36 Identities=31% Similarity=0.596 Sum_probs=33.5
Q ss_pred CCcchHHHHHHhcCCCCCccCCCCCCCCccccccccccc
Q psy1765 819 PNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGLY 857 (867)
Q Consensus 819 ~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~~ 857 (867)
+..++|.+||+|||||||.||||.+ +||++||.+.+
T Consensus 114 ~t~gig~Kll~kMGYkpG~GLGkn~---qGIv~Pieaq~ 149 (767)
T KOG2184|consen 114 GTKGIGAKLLEKMGYKPGKGLGKNA---QGIVAPIEAQL 149 (767)
T ss_pred cccchhHHHHHHcCCccccccCccc---cccccHHhccc
Confidence 4688999999999999999999999 99999999865
No 93
>KOG2185|consensus
Probab=97.49 E-value=4.4e-05 Score=82.50 Aligned_cols=36 Identities=25% Similarity=0.543 Sum_probs=32.2
Q ss_pred CCcchHHHHHHhcCCCCCccCCCCCCCCccccccccccc
Q psy1765 819 PNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGLY 857 (867)
Q Consensus 819 ~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~~ 857 (867)
....+|.+||+||||+.|.|||+.+ +||++||.+-.
T Consensus 295 hTRGIgsKLM~kMGY~~G~GLG~~g---~GiV~pI~a~v 330 (486)
T KOG2185|consen 295 HTRGIGSKLMAKMGYREGMGLGVSG---QGIVNPILAKV 330 (486)
T ss_pred ccchHHHHHHHHhchhhccccCcCC---Cccccchhhhh
Confidence 3457999999999999999999999 89999998753
No 94
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=97.35 E-value=0.0018 Score=68.90 Aligned_cols=152 Identities=20% Similarity=0.193 Sum_probs=88.1
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEE-EEEECCCCCCCCchhhHHHHHhhcCC-CceEEEEeccchh
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEI-ILVNDFSEYPSNLHGEVETFVKGLND-GRVHLYRTSKREG 126 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~Ei-IlVDd~S~d~s~~~~~~~~~~~~~~~-~~~~~~~~~~~~g 126 (867)
...++|=|++|..| +.+++.+.++.|.+.+||..+..| .||.|.++.+ ...+.|+.+++.+.. +.
T Consensus 22 ~~~e~VLILtplrn-a~~~l~~y~~~L~~L~YP~~lIsLgfLv~d~~e~d-~t~~~l~~~~~~~q~~~~----------- 88 (269)
T PF03452_consen 22 RNKESVLILTPLRN-AASFLPDYFDNLLSLTYPHELISLGFLVSDSSEFD-NTLKILEAALKKLQSHGP----------- 88 (269)
T ss_pred ccCCeEEEEEecCC-chHHHHHHHHHHHhCCCCchheEEEEEcCCCchhH-HHHHHHHHHHHHHhccCc-----------
Confidence 34578999999999 556999999999999999887777 5666666444 223444444432211 00
Q ss_pred hHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcC---
Q psy1765 127 LIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT--- 203 (867)
Q Consensus 127 i~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~--- 203 (867)
....+..|.++-....+... ...-.++ ...+ ....+.-+++|||..+..|-
T Consensus 89 -----------------~~~~F~~itIl~~df~~~~~-----~~~~~RH---~~~~-Q~~RR~~mAraRN~LL~~aL~p~ 142 (269)
T PF03452_consen 89 -----------------ESKRFRSITILRKDFGQQLS-----QDRSERH---AFEV-QRPRRRAMARARNFLLSSALGPW 142 (269)
T ss_pred -----------------ccCCcceEEEEcCCCccccc-----Cchhhcc---chhh-HHHHHHHHHHHHHHHHHhhcCCc
Confidence 00111223333211111000 0000000 1111 11125568999999988884
Q ss_pred CCEEEEEcCCccc-CccchHHHHHHHHhcCCceeeeEEeee
Q psy1765 204 GKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPIIDII 243 (867)
Q Consensus 204 Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~~~vv~p~i~~i 243 (867)
.+|+++||+|++- +|+.|+.|+ .+...+|+|.+...
T Consensus 143 ~swVlWlDaDIv~~P~~lI~dli----~~~kdIivPn~~~~ 179 (269)
T PF03452_consen 143 HSWVLWLDADIVETPPTLIQDLI----AHDKDIIVPNCWRR 179 (269)
T ss_pred ccEEEEEecCcccCChHHHHHHH----hCCCCEEccceeec
Confidence 4999999999985 566665554 46667888876443
No 95
>KOG2809|consensus
Probab=97.32 E-value=0.00012 Score=78.48 Aligned_cols=37 Identities=32% Similarity=0.601 Sum_probs=31.7
Q ss_pred CCcchHHHHHHhcCCCCCccCCCCCCCCcccccccccccc
Q psy1765 819 PNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGLYY 858 (867)
Q Consensus 819 ~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~~~ 858 (867)
+.+--|++||.||||++|.|||+.. +|++.||.--++
T Consensus 24 d~~~fg~KlLekmGW~eG~GLG~~~---qG~~~~IKvs~K 60 (326)
T KOG2809|consen 24 DDSRFGKKLLEKMGWSEGDGLGKNE---QGITDPIKVSLK 60 (326)
T ss_pred cchHHHHHHHHHcCCccCCcccccc---cCCccceEEEec
Confidence 4445799999999999999999998 899999975543
No 96
>KOG3673|consensus
Probab=97.24 E-value=0.00014 Score=81.39 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=32.4
Q ss_pred CcchHHHHHHhcCCCCCccCCCCCCCCccccccccccc
Q psy1765 820 NENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGLY 857 (867)
Q Consensus 820 ~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~~ 857 (867)
..|+..+||+||||+.|+||||.+ |||.|||.+-.
T Consensus 82 y~~va~~lMakMG~~~geGLGK~~---QGr~epi~as~ 116 (845)
T KOG3673|consen 82 YLTVAERLMAKMGHKAGEGLGKHG---QGRSEPIAAST 116 (845)
T ss_pred cchHHHHHHHHhCccccccccccC---CCccchhhhhh
Confidence 578999999999999999999999 99999998753
No 97
>KOG1996|consensus
Probab=97.05 E-value=0.00028 Score=73.36 Aligned_cols=31 Identities=32% Similarity=0.443 Sum_probs=27.0
Q ss_pred hHHHHHHhcCCCCCccCCCCCCCCcccccccccc
Q psy1765 823 KGFRMLSKMGWKAGQTLGKDEANSAALIEPELGL 856 (867)
Q Consensus 823 ~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~ 856 (867)
...+||+|||||+|+||||++ ||+..|+..+
T Consensus 214 vA~~im~k~G~keGqGLGKsE---QGlsTalsve 244 (378)
T KOG1996|consen 214 VAHKIMQKYGFKEGQGLGKSE---QGLSTALSVE 244 (378)
T ss_pred HHHHHHHHhCcccccCcCccc---cccccceeee
Confidence 567999999999999999999 8988776544
No 98
>KOG4368|consensus
Probab=96.84 E-value=0.00058 Score=76.97 Aligned_cols=36 Identities=44% Similarity=0.834 Sum_probs=32.4
Q ss_pred cCCCCcchHHHHHHhcCCCCCccCCCCCCCCccccccccc
Q psy1765 816 ESIPNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELG 855 (867)
Q Consensus 816 ~~~~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~ 855 (867)
+.|.++|||.+||+||||. |.|||..+ +||..||..
T Consensus 682 ~~lse~NKGhQml~KMGWs-G~GLGak~---qGI~DPiSG 717 (757)
T KOG4368|consen 682 APLGEENKGHQMLVKMGWS-GSGLGAKE---QGIQDPISG 717 (757)
T ss_pred CccccccchhhhHhhcCcc-cCCccccc---ccccCcccC
Confidence 3488999999999999997 99999999 999999863
No 99
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=96.79 E-value=0.021 Score=64.84 Aligned_cols=202 Identities=15% Similarity=0.111 Sum_probs=91.1
Q ss_pred CCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHH
Q psy1765 50 TLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIR 129 (867)
Q Consensus 50 ~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 129 (867)
..|.+-|+|.+||.+. .|.+||+||++..+..-..-|||-.||+... ..+.++.+.++ +.+++.-
T Consensus 91 ~~~~~pVlV~AcNRp~-yl~r~L~sLl~~rp~~~~fpIiVSQDg~~~~------~~~vi~~y~~~-v~~i~~~------- 155 (434)
T PF03071_consen 91 KEPVIPVLVFACNRPD-YLRRTLDSLLKYRPSAEKFPIIVSQDGDDEE------VAEVIKSYGDQ-VTYIQHP------- 155 (434)
T ss_dssp ------EEEEESS-TT--HHHHHHHHHHH-S-TTTS-EEEEE-TT-HH------HHHHHHGGGGG-SEEEE-S-------
T ss_pred CCCcceEEEEecCCcH-HHHHHHHHHHHcCCCCCCccEEEEecCCcHH------HHHHHHHhhhh-heeeecC-------
Confidence 4567889999999765 9999999999965443223799988887554 22333322111 1111110
Q ss_pred HhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCC--------CcCchhHHhHhhhh
Q psy1765 130 ARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSK--------REGLIRARMFGAKY 201 (867)
Q Consensus 130 a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~--------n~G~a~ArN~G~~~ 201 (867)
|- ..+.+...++ ...+..|.+.-+..
T Consensus 156 -------------------------~~---------------------~~i~~~~~~~~~~~y~~IA~HYk~aL~~vF~~ 189 (434)
T PF03071_consen 156 -------------------------DF---------------------SPITIPPKEKKFKGYYKIARHYKWALSQVFNK 189 (434)
T ss_dssp ------------------------------------------------S-----TT-GGGHHHHHHHHHHHHHHHHHHHT
T ss_pred -------------------------Cc---------------------CCceeCcccccccchHHHHHHHHHHHHHHHHh
Confidence 00 0111110000 01122344444444
Q ss_pred cCCCEEEEEcCCcccCccchHHHHH---HHHhcCCc-eeeeEEeeecCCCceeccccccccccccccccccccCCcCcCC
Q psy1765 202 ATGKVLVFLDSHIEVNTHWLEPLLV---PIAERTNT-VTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLN 277 (867)
Q Consensus 202 A~Gd~llfLDaD~~v~p~wLe~Ll~---~l~~~~~~-vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~ 277 (867)
-..+.++++..|.++.||+++=+.+ .+..++.. +|++.. +.+.. ...
T Consensus 190 ~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~ciSawN----dnG~~-------------------------~~~ 240 (434)
T PF03071_consen 190 FKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLWCISAWN----DNGKE-------------------------HFV 240 (434)
T ss_dssp S--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEEEEES------TT-BG-------------------------GGS
T ss_pred cCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeEEEEccc----cCCcc-------------------------ccc
Confidence 4678999999999999998865444 44555543 333211 11000 000
Q ss_pred CCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHH--HHHcCCeEEEEcccEEEEEec
Q psy1765 278 SSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFR--IWMCGGSLAMIPCSRIGHVFR 347 (867)
Q Consensus 278 ~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~R--l~~~G~~i~~~P~s~V~H~~r 347 (867)
....+...+++..+.|=..|++|+.|+++.. . |-..-.|-.+| ....|-.++.=--+|.+|..+
T Consensus 241 ~~~~~~~lyRsdffpglGWml~r~~w~el~~---~---Wp~~~WDdwmR~~~~rkgR~cIrPeisRt~~fg~ 306 (434)
T PF03071_consen 241 DDSRPSLLYRSDFFPGLGWMLTRELWDELEP---K---WPKAFWDDWMRQPEQRKGRQCIRPEISRTYHFGK 306 (434)
T ss_dssp -TT-TT-EEEESS---SSEEEEHHHHHHHGG---G-----SS-HHHHHTSHHHHTT-EEEEESSBSEEE--S
T ss_pred cCCCccceEecccCCchHHHhhHHHHHhhcc---c---CCCCCchhhhcCccccCCCceeeccCCCccccCc
Confidence 0011223356777777779999999998752 1 22233577777 344554454433356777543
No 100
>PF13896 Glyco_transf_49: Glycosyl-transferase for dystroglycan
Probab=96.74 E-value=0.011 Score=65.47 Aligned_cols=150 Identities=16% Similarity=0.186 Sum_probs=93.2
Q ss_pred CcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhc----CCceeeeEEeeecCCCceecccc----cccc-
Q psy1765 188 REGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAER----TNTVTVPIIDIINADTFQYTSSA----LVRG- 258 (867)
Q Consensus 188 n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~----~~~vv~p~i~~i~~~~~~~~~~~----~~~g- 258 (867)
-.-+...||.|...|+.++++.+|.|..++++.-+.+++.+... ..+.|.|....-....+...... ...|
T Consensus 112 ~YPiN~LRNvAr~~a~T~~v~~~DvD~~ps~~l~~~l~~~~~~~~~~~~~a~VvPaFE~~~~~~~P~~K~eL~~~~~~~~ 191 (317)
T PF13896_consen 112 LYPINLLRNVARSGARTDYVFLLDVDFLPSPGLYEKLLRFARRNIDKSKTAFVVPAFETREGADIPRTKKELLELLKNGK 191 (317)
T ss_pred CCChHHHHHHHHHhcCcceEEEecceeeeCcchHHHHHHHhhhhccCCceEEEEeeeecccCcCCCCCHHHHHHHHHhCc
Confidence 45567899999999999999999999999999888888777643 34667787754333221111000 0001
Q ss_pred --ccc---c------ccccccccCCcCcCCCCCCCCCccccccccc--ceEeEeHHHHHHhCCCCCCCCCCcccchHHHH
Q psy1765 259 --GFN---W------GLHFKWENLPKGTLNSSEDFIKPILSPTMAG--GLFAIDRQYFDSLGQYDAGLEIWGGENLELSF 325 (867)
Q Consensus 259 --~f~---~------~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G--~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~ 325 (867)
.|. | .-.-+|...+... ....++.+.+-.+ ..+.++| .+-.|||.|..||..-+-...
T Consensus 192 ~~~Fh~~~~~~~h~~t~~~~W~~~~~~~-----~~~~~y~v~~~~~~EP~~I~~~----~~P~yDErF~~yg~nk~s~~~ 262 (317)
T PF13896_consen 192 ARPFHHKVCPQGHGPTNYDRWFSAPESD-----ELDVPYEVKYEDGWEPYYIGRR----NVPLYDERFRGYGFNKISQIY 262 (317)
T ss_pred hhhccccccccCcCCccHHHHhccCCcC-----CCcceEEEccCCCccCEEEccC----CCCCCcccccccccchHHHHH
Confidence 011 0 0011232221110 0011111111100 1223333 567899999999999999999
Q ss_pred HHHHcCCeEEEEcccEEEEEe
Q psy1765 326 RIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 326 Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
-+..+||+..++|.+.+.|..
T Consensus 263 eL~~~gy~F~VL~~aFlVH~~ 283 (317)
T PF13896_consen 263 ELCAAGYRFHVLPNAFLVHRP 283 (317)
T ss_pred HHHHcCCEEEEcCCeeEEecC
Confidence 999999999999999999974
No 101
>PF12656 G-patch_2: DExH-box splicing factor binding site
Probab=96.56 E-value=0.0013 Score=56.55 Aligned_cols=34 Identities=35% Similarity=0.735 Sum_probs=28.4
Q ss_pred CCCcchHHHHHHhcCCCCCccCCCCCCCCcccccccc
Q psy1765 818 IPNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPEL 854 (867)
Q Consensus 818 ~~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~ 854 (867)
+.-++-|.+||+.|||++|+++|++. ++.++|+.
T Consensus 27 vPVe~FG~AlLRGMGW~~~~~~g~~~---~~~~~~~~ 60 (77)
T PF12656_consen 27 VPVEEFGAALLRGMGWKPGEGIGKNK---KKSVKPVE 60 (77)
T ss_pred CCHHHHHHHHHHHcCCCCCCCCCCCc---ccccCccc
Confidence 45567999999999999999999998 56666654
No 102
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=96.54 E-value=0.015 Score=52.36 Aligned_cols=32 Identities=22% Similarity=0.037 Sum_probs=23.1
Q ss_pred CCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCC
Q psy1765 61 YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYP 97 (867)
Q Consensus 61 yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~ 97 (867)
+||+. .|.+.|...++.-. .+|+|+||+|+|+
T Consensus 1 rne~~-~L~~wl~~~~~lG~----d~i~i~d~~s~D~ 32 (97)
T PF13704_consen 1 RNEAD-YLPEWLAHHLALGV----DHIYIYDDGSTDG 32 (97)
T ss_pred CChHH-HHHHHHHHHHHcCC----CEEEEEECCCCcc
Confidence 47665 88888888765532 2678888888887
No 103
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=96.33 E-value=0.0058 Score=59.59 Aligned_cols=74 Identities=24% Similarity=0.322 Sum_probs=48.9
Q ss_pred cCceeeeCCCCcEEEe-cCCCCCCCeEEEe--cCCeeeeecCCCCceeecCCCCC---CCeEEEEecCCC----CCceEE
Q psy1765 727 ELLCLDAGATKPKLTK-CHEMGGSQEWNFV--LRDKTPIYSPATGTCLGSKNRLE---NTVIVMEMCAQH----KDTSWD 796 (867)
Q Consensus 727 s~~CLD~~g~~v~~~~-C~~~~~~Q~W~~~--~~~~~~i~n~~sg~CLd~~~~~~---g~~v~~~~C~~~----~~Q~W~ 796 (867)
++.||.+.+..+...+ |+.+...|.|.+. .+|..+|++.++++||.+..... ...+.+..|+.. ..|+|.
T Consensus 61 ~~~CL~~~~~G~~~~~~C~~~~~~q~F~iiPtttgAVQIks~~~~~Cl~~~~~~~~~~~~~i~l~~Cd~~~~~~l~~lw~ 140 (150)
T PF03498_consen 61 TGTCLAAYGNGVFHYKSCDQDNLEQVFSIIPTTTGAVQIKSLSTGECLQTFNNSRTPIYYSIGLTPCDKSKEINLDQLWF 140 (150)
T ss_dssp TSEEEEEETTCEEEE--TTTCHGHH-EEEEEBTTS-EEEEETTT--EEEE-STTSS-SSEEEEEE---S-EEETGGGEEE
T ss_pred CCcceeecCCCeEeecccCCCChhceEEEEEcCCCcEEEEecCCCceEEecCCCceeEEeeEEeeeCCCcCCCCHHHcEE
Confidence 5779999777777777 9987667999876 56778899999999999865432 457999999433 239999
Q ss_pred EecC
Q psy1765 797 LVPV 800 (867)
Q Consensus 797 ~~~~ 800 (867)
|.|.
T Consensus 141 itPP 144 (150)
T PF03498_consen 141 ITPP 144 (150)
T ss_dssp EE--
T ss_pred EcCC
Confidence 9874
No 104
>KOG2384|consensus
Probab=96.14 E-value=0.0033 Score=62.24 Aligned_cols=38 Identities=26% Similarity=0.524 Sum_probs=34.5
Q ss_pred CCCcchHHHHHHhcCCCCCccCCCCCCCCcccccccccccc
Q psy1765 818 IPNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGLYY 858 (867)
Q Consensus 818 ~~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~~~ 858 (867)
|.++|.||++|.+-||.|+.|||..+ +|+..||-.-++
T Consensus 125 i~pks~GyrLl~~~GW~pe~GLGp~~---~Grr~PvrTvlk 162 (223)
T KOG2384|consen 125 IKPKSLGYRLLSQYGWSPEAGLGPEN---QGRRAPVRTVLK 162 (223)
T ss_pred CCCCCchHHHHHhcCCCcccCCCccc---cCcccchhHHHh
Confidence 78999999999999999999999999 899999976543
No 105
>COG2943 MdoH Membrane glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=95.72 E-value=0.16 Score=57.80 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=76.4
Q ss_pred CCEEEEEcCCCcCchhHHhHhh-hh--cCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEE-eeecCCCceecc-
Q psy1765 178 GRVHLYRTSKREGLIRARMFGA-KY--ATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII-DIINADTFQYTS- 252 (867)
Q Consensus 178 ~~vrii~~~~n~G~a~ArN~G~-~~--A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i-~~i~~~~~~~~~- 252 (867)
.+|-+-+..+|.|.-+++-.-+ +. ...++++.||+|..+..+.+.+|++.++.+|...+.-.+ ..++++++-...
T Consensus 212 ~~ifYRrRr~n~~RKaGNIaDfcrRwG~~Y~~MlVLDADSvMtgd~lvrLv~~ME~~P~aGlIQt~P~~~gg~TL~AR~q 291 (736)
T COG2943 212 GNIFYRRRRRNVKRKAGNIADFCRRWGSAYSYMLVLDADSVMTGDCLVRLVRLMEANPDAGLIQTSPKASGGDTLYARCQ 291 (736)
T ss_pred CceeeehHhhhhcccccCHHHHHHHhCcccceEEEeecccccCchHHHHHHHHHhhCCCCceeecchhhcCcchHHHHHH
Confidence 3555555554544333222211 11 246999999999999999999999999999875432111 223444432111
Q ss_pred -------ccccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCC--CCCCcc----c
Q psy1765 253 -------SALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAG--LEIWGG----E 319 (867)
Q Consensus 253 -------~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~--~~~~G~----E 319 (867)
++...-|..| |. .. -....|.+-.||.+.|-+.-|..+- -..+|| -
T Consensus 292 QFatrvYGpl~~~GLaw-----W~-~~---------------Es~yWGHNAIIRt~aF~~hcgLp~LpG~~pFgG~ilSH 350 (736)
T COG2943 292 QFATRVYGPLFTAGLAW-----WQ-LG---------------ESHYWGHNAIIRTKAFIEHCGLPPLPGRGPFGGHILSH 350 (736)
T ss_pred HHHHHHhchHHhhhhHH-----Hh-cc---------------ccccccccceeechhhHHhcCCCCCCCCCCCCccccch
Confidence 1111111111 11 00 0133466777888888887665431 112222 2
Q ss_pred chHHHHHHHHcCCeEEEEcc
Q psy1765 320 NLELSFRIWMCGGSLAMIPC 339 (867)
Q Consensus 320 D~Dls~Rl~~~G~~i~~~P~ 339 (867)
|+-=+-=++++|+.+.+.|+
T Consensus 351 DfvEAALmRRaGW~v~ia~d 370 (736)
T COG2943 351 DFVEAALMRRAGWGVWIAYD 370 (736)
T ss_pred HHHHHHHHhhcCceEEEecc
Confidence 33223337788998887774
No 106
>PLN02195 cellulose synthase A
Probab=95.01 E-value=0.42 Score=59.02 Aligned_cols=177 Identities=16% Similarity=0.163 Sum_probs=97.6
Q ss_pred CCCCcEEEEEEeCC---CChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchh--hHHHHHh--------------
Q psy1765 49 STLPSTSVIICFYN---EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG--EVETFVK-------------- 109 (867)
Q Consensus 49 ~~~P~vSVIIp~yN---e~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~--~~~~~~~-------------- 109 (867)
+.+|.|-|.|++-+ |+.-....|+-||++-+||.-..-+.|-|||.+.-+ +.+ |..+|++
T Consensus 249 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT-f~AL~EAa~FA~~WvPFCkK~~IepR 327 (977)
T PLN02195 249 SQLAAVDFFVSTVDPLKEPPLITANTVLSILAVDYPVDKVSCYVSDDGAAMLS-FESLVETAEFARKWVPFCKKYSIEPR 327 (977)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHH-HHHHHHHHHHHHhhcccccccCCCcC
Confidence 56999999999964 666689999999999999976557889999976541 111 1122222
Q ss_pred ---hcCCCceEEE-------Eeccchhh------HHHhhhhhhhhccccccccceeEEEEEeCCCCCCc----CchHHHH
Q psy1765 110 ---GLNDGRVHLY-------RTSKREGL------IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPS----NLHGEVE 169 (867)
Q Consensus 110 ---~~~~~~~~~~-------~~~~~~gi------~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~----~~~~~l~ 169 (867)
+.+.+..... ...+++-+ ...|+.++..-. ..+..|.-...|++.-|. +-..++.
T Consensus 328 aPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~k~RIe~~~~~~-----~~~~~~~~~m~d~t~W~g~~~~dHp~IIq 402 (977)
T PLN02195 328 APEFYFSQKIDYLKDKVQPSFVKERRAMKRDYEEYKVRVNALVAKA-----QKTPEEGWTMQDGTPWPGNNTRDHPGMIQ 402 (977)
T ss_pred CHHHHhccCCCcccCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhc-----ccCCcccccccCCccCCCCCCCCCcchhh
Confidence 1111111111 01111111 122222222100 011111111222221000 0000011
Q ss_pred HHHh--------hcCCCCEEEEEcCCCcC-----chhHHhHhhhhc----CCCEEEEEcCCcccCc-cchHHHHHHHHhc
Q psy1765 170 SFVK--------GLNNGRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEVNT-HWLEPLLVPIAER 231 (867)
Q Consensus 170 ~~~~--------~~~~~~vrii~~~~n~G-----~a~ArN~G~~~A----~Gd~llfLDaD~~v~p-~wLe~Ll~~l~~~ 231 (867)
-.+. ...-|.+.+|..+++.| .++|+|.+++.+ .|+||+.||+|..+++ ++|.+.+-.|...
T Consensus 403 Vll~~~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGamNallrvSavmTNap~il~lDcDmy~n~s~~lr~AMCf~~D~ 482 (977)
T PLN02195 403 VFLGETGARDIEGNELPRLVYVSREKRPGYQHHKKAGAENALVRVSAVLTNAPYILNLDCDHYVNNSKAVREAMCFLMDP 482 (977)
T ss_pred hhccCCCCcccccccCceeEEEeccCCCCCCcccccchhHHHHHHhhhccCCCeEEEecCccccCcHHHHHHHHhhccCc
Confidence 1100 00127888888888877 578999999854 6999999999998855 7999988887643
No 107
>KOG0154|consensus
Probab=94.94 E-value=0.013 Score=70.21 Aligned_cols=44 Identities=39% Similarity=0.538 Sum_probs=39.4
Q ss_pred cCCCCcchHHHHHHhcCCCCCccCCCCCCCCcccccccccccccccc
Q psy1765 816 ESIPNENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGLYYDELK 862 (867)
Q Consensus 816 ~~~~~~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~~~~~~~ 862 (867)
-+|+.+|+|.+||++|||+.|+|||+.. +|+++||.+.-+...+
T Consensus 507 ~~~~~sn~~~~~l~~~gw~~g~Glg~~~---~g~~~~~e~~~~~~~~ 550 (573)
T KOG0154|consen 507 PPIDTSNVGNRMLQSMGWKEGSGLGKKN---QGIKEPIEAEGRDRGA 550 (573)
T ss_pred ccCCCCccchhhhhccCccccccccccc---CCCcccccccccccCC
Confidence 4589999999999999999999999999 8999999987766543
No 108
>PLN02189 cellulose synthase
Probab=94.85 E-value=0.15 Score=63.22 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=103.0
Q ss_pred CCCCcEEEEEEeC---CCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchh--hHHHHHhh---------cC-C
Q psy1765 49 STLPSTSVIICFY---NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG--EVETFVKG---------LN-D 113 (867)
Q Consensus 49 ~~~P~vSVIIp~y---Ne~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~--~~~~~~~~---------~~-~ 113 (867)
+.+|.|-|.|++- .|+.-.+..|+-||++-+||.-..-+.|-|||.+.-+ +.+ |..+|++. +. -
T Consensus 328 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT-f~AL~EAa~FA~~WvPFCkK~~IepR 406 (1040)
T PLN02189 328 NMLSPVDIFVSTVDPLKEPPLVTANTVLSILAMDYPVDKISCYVSDDGASMLT-FEALSETAEFARKWVPFCKKFSIEPR 406 (1040)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHHH-HHHHHHHHHHHHhhcccccccCCCcC
Confidence 4599999999996 4676689999999999999976557889999876541 111 11222220 00 0
Q ss_pred CceEEEEecc-------c-hhhHHHhhhhhhhhcccccc-------ccceeEEEEEeCCCCCCc----CchHHHHHHHhh
Q psy1765 114 GRVHLYRTSK-------R-EGLIRARMFGAKYATGKNRI-------QSLLHEIILVNDFSEYPS----NLHGEVESFVKG 174 (867)
Q Consensus 114 ~~~~~~~~~~-------~-~gi~~a~~~g~~~a~g~~~~-------~~~l~EIIVVDn~Std~~----~~~~~l~~~~~~ 174 (867)
++-.|+-.+. . +-+.+-+...-++-.-...+ ..+..|--+.+||+.-|. +-..++.-.+..
T Consensus 407 aPe~YFs~~~~~~~~~~~~~F~~e~~~~K~eYEe~kvRI~~l~a~~~~~p~~~~~m~dGt~W~g~~~~dHp~IiQVll~~ 486 (1040)
T PLN02189 407 APEFYFSLKVDYLKDKVQPTFVKERRAMKREYEEFKVRINAIVAKAQKVPPEGWIMQDGTPWPGNNTRDHPGMIQVFLGH 486 (1040)
T ss_pred CHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhcCccCCccceeccCccCCCCCCCCCHHHHHHHhcC
Confidence 1111111100 0 00111111111111111111 112234455678872110 011122222221
Q ss_pred --------cCCCCEEEEEcCCCcC-----chhHHhHhhhh----cCCCEEEEEcCCcccC-ccchHHHHHHHHh
Q psy1765 175 --------LNNGRVHLYRTSKREG-----LIRARMFGAKY----ATGKVLVFLDSHIEVN-THWLEPLLVPIAE 230 (867)
Q Consensus 175 --------~~~~~vrii~~~~n~G-----~a~ArN~G~~~----A~Gd~llfLDaD~~v~-p~wLe~Ll~~l~~ 230 (867)
..-|.+.+|..+++.| .|+|+|..++. ..|+||+.||+|..++ +..|...+-.|..
T Consensus 487 ~~~~d~~g~~lP~LVYVSREKrPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmY~Nns~alr~AMCfflD 560 (1040)
T PLN02189 487 SGGHDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNAPFMLNLDCDHYINNSKAVREAMCFLMD 560 (1040)
T ss_pred CCCccccccccceeEEEeccCCCCCCcccchhhHHHHHHHhhhccCCCeEEEccCccccCchHHHHHhhhhhcC
Confidence 0125688888888877 68999999955 4799999999999995 6999998888874
No 109
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=94.01 E-value=0.61 Score=58.23 Aligned_cols=177 Identities=16% Similarity=0.200 Sum_probs=102.8
Q ss_pred CCCCcEEEEEEeCC---CChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchh--hHHHHHh--------------
Q psy1765 49 STLPSTSVIICFYN---EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG--EVETFVK-------------- 109 (867)
Q Consensus 49 ~~~P~vSVIIp~yN---e~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~--~~~~~~~-------------- 109 (867)
+.+|.|-|.|++-+ |+.-.+..||-||++-+||.-..-+.|-|||.+.-+ +.+ |..+|++
T Consensus 346 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT-f~AL~EAa~FA~~WvPFCkK~~IepR 424 (1079)
T PLN02638 346 SQLAAVDIFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGAAMLT-FEALSETSEFARKWVPFCKKYNIEPR 424 (1079)
T ss_pred ccCCCccEEEeCCCCccCccHHHHHHHHHHHhhcccccceeEEEecCCchHHH-HHHHHHHHHHHHhhcccccccCCCcC
Confidence 45999999999964 666689999999999999976557889999976541 111 1122222
Q ss_pred ---hcCCCceEEE-------Eeccchhh------HHHhhhhhhhhccccccccceeEEEEEeCCCCCCc----CchHHHH
Q psy1765 110 ---GLNDGRVHLY-------RTSKREGL------IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPS----NLHGEVE 169 (867)
Q Consensus 110 ---~~~~~~~~~~-------~~~~~~gi------~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~----~~~~~l~ 169 (867)
+.+.+.+... ...+++-+ ...|+.++.+-. ..+..|--+.+||+.-|. +-..++.
T Consensus 425 aPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~a~~-----~~~p~~~~~m~dgt~W~g~~~~dHp~Iiq 499 (1079)
T PLN02638 425 APEWYFAQKIDYLKDKVQPSFVKDRRAMKREYEEFKVRINGLVAKA-----QKVPEEGWIMQDGTPWPGNNTRDHPGMIQ 499 (1079)
T ss_pred CHHHHhccCCCcccccCCchHHHHHHHHHHHHHHHHHHHHHHHhhc-----cccCCccccccCCccCCCCCCCCCHHHHH
Confidence 1111111110 01111111 112222221110 112223344566761100 0011222
Q ss_pred HHHhh--------cCCCCEEEEEcCCCcC-----chhHHhHhhhhc----CCCEEEEEcCCcccC-ccchHHHHHHHHhc
Q psy1765 170 SFVKG--------LNNGRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEVN-THWLEPLLVPIAER 231 (867)
Q Consensus 170 ~~~~~--------~~~~~vrii~~~~n~G-----~a~ArN~G~~~A----~Gd~llfLDaD~~v~-p~wLe~Ll~~l~~~ 231 (867)
-.+.. ..-|.+.+|..+++.| .|+|+|..++.+ .|+||+.||+|..++ |..+...+-.|...
T Consensus 500 Vll~~~~~~d~~g~~lP~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaPfILNLDCDmYiNns~alr~AMCf~lDp 579 (1079)
T PLN02638 500 VFLGHSGGLDTEGNELPRLVYVSREKRPGFQHHKKAGAMNALVRVSAVLTNGPFLLNLDCDHYINNSKALREAMCFLMDP 579 (1079)
T ss_pred HHhcCCCccccccccccceEEEecccCCCCCcccccchHHHHHHHhhhccCCCeEeecccCcccCchHHHHHhhhhhcCc
Confidence 22210 0126778888888877 689999999655 899999999999885 99999998887643
No 110
>KOG2571|consensus
Probab=93.98 E-value=0.19 Score=61.31 Aligned_cols=139 Identities=11% Similarity=-0.008 Sum_probs=77.6
Q ss_pred chhHHhHhhhhcCC--CEEEEEcCCcccCccchHHHHHHHHhcCC-ceeeeEEeeecCCCceeccccccccccccccccc
Q psy1765 191 LIRARMFGAKYATG--KVLVFLDSHIEVNTHWLEPLLVPIAERTN-TVTVPIIDIINADTFQYTSSALVRGGFNWGLHFK 267 (867)
Q Consensus 191 ~a~ArN~G~~~A~G--d~llfLDaD~~v~p~wLe~Ll~~l~~~~~-~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~ 267 (867)
+=-..+........ +||+++|+|+.+.|+.|-.|++.++.++. +.+|+.|....+.-+.. ...|...+.+
T Consensus 426 ~r~~~y~~~~~L~~~v~~il~vD~dT~~~P~ai~~lv~~f~~dp~VggaCG~I~~~~~~w~v~------~Q~FEY~Ish- 498 (862)
T KOG2571|consen 426 HRWVMYTAFKALMPSVDYILVVDADTRLDPDALYHLVKVFDEDPQVGGACGRILNKGGSWVVA------YQNFEYAISH- 498 (862)
T ss_pred HHHHHHHHHHHhcCcceEEEEecCCCccCcHHHHHHHHHhccCcccceeccccccCCCceEEe------HHHHHHHHHH-
Confidence 33445555555544 46699999999999999999999998876 66677553322211100 0001110100
Q ss_pred cccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhC-------CCCC---CCCCCcccchHHHHHHHHcCCeEEEE
Q psy1765 268 WENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLG-------QYDA---GLEIWGGENLELSFRIWMCGGSLAMI 337 (867)
Q Consensus 268 ~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vG-------gfDe---~~~~~G~ED~Dls~Rl~~~G~~i~~~ 337 (867)
|. .+.. ....-.+..+.|++-++|-+++..-- .+.+ ..+--=+||-=||.++...||.+.|+
T Consensus 499 ~l-------~Ka~-ESvFG~VsclPGcfs~yR~~aL~~~~~~~~y~~~~~~~~~~~~~~~geDR~L~~~llskgy~l~Y~ 570 (862)
T KOG2571|consen 499 NL-------QKAT-ESVFGCVSCLPGCFSLYRASALMDQFVEYFYGEKFSGPRHGIQYSLGEDRWLCTLLLSKGYRLKYV 570 (862)
T ss_pred HH-------HHhh-hhhceeEEecCchhHHHHHHHHhcchHHhhhchhhcCcccccccccchhHHHHHHHHhccceeeee
Confidence 00 0000 00011234555666666664433211 0111 00001179999999999999999999
Q ss_pred cccEEEE
Q psy1765 338 PCSRIGH 344 (867)
Q Consensus 338 P~s~V~H 344 (867)
+.|...-
T Consensus 571 a~s~a~t 577 (862)
T KOG2571|consen 571 AASDAET 577 (862)
T ss_pred ccccccc
Confidence 9877653
No 111
>KOG3917|consensus
Probab=93.88 E-value=0.06 Score=54.58 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=42.0
Q ss_pred ccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeE
Q psy1765 290 TMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSL 334 (867)
Q Consensus 290 ~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i 334 (867)
.+.||.++++++-|.++.|+...|-.||-||-||-+||..+|..+
T Consensus 180 ~fvGGILll~~~hyk~~NGMSN~yWGWGlEDDEFy~RI~dagLql 224 (310)
T KOG3917|consen 180 KFVGGILLLTLKHYKKLNGMSNKYWGWGLEDDEFYLRIIDAGLQL 224 (310)
T ss_pred hhcceeEEeeHHHHHHhcCccccccccCcccchhhheeccccceE
Confidence 567899999999999999999999999999999999999999765
No 112
>KOG2138|consensus
Probab=92.57 E-value=0.059 Score=62.71 Aligned_cols=21 Identities=43% Similarity=1.045 Sum_probs=19.6
Q ss_pred CcchHHHHHHhcCCCCCccCC
Q psy1765 820 NENKGFRMLSKMGWKAGQTLG 840 (867)
Q Consensus 820 ~~~~g~~~~~~~g~~~g~~lg 840 (867)
.+.+|++||.||||++|+|+|
T Consensus 147 s~sIgvrlLrsMGWr~GqgIg 167 (883)
T KOG2138|consen 147 SDSIGVRLLRSMGWREGQGIG 167 (883)
T ss_pred hhhHHHHHHHHhcCccCCCcC
Confidence 457999999999999999999
No 113
>PF09488 Osmo_MPGsynth: Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth); InterPro: IPR012812 This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together with mannosyl-3-phosphoglycerate phosphatase (MPGP), comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus (Rhodothermus obamensis), this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.; GO: 0050504 mannosyl-3-phosphoglycerate synthase activity, 0051479 mannosylglycerate biosynthetic process, 0005737 cytoplasm; PDB: 2WVM_A 2WVL_A 2WVK_A 2ZU7_B 2ZU9_B 2ZU8_A.
Probab=91.68 E-value=0.79 Score=50.36 Aligned_cols=130 Identities=21% Similarity=0.213 Sum_probs=65.3
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCC-CchhhHHHHHhhcC--CCceEEEEeccchhh
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS-NLHGEVETFVKGLN--DGRVHLYRTSKREGL 127 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s-~~~~~~~~~~~~~~--~~~~~~~~~~~~~gi 127 (867)
+-...||||+-||....| +-||.--|.+- =||||-|.+..+- ..+.+.+ -++.+- -.|-.++..++.-|+
T Consensus 49 l~~maIVVP~KnE~l~ll----eGVL~gIPh~C--~IIvVSNS~r~~~d~f~~E~d-~l~~f~~~t~r~~~~vHQkDp~l 121 (381)
T PF09488_consen 49 LSKMAIVVPCKNEKLKLL----EGVLSGIPHDC--LIIVVSNSSREPVDRFKMEVD-LLKHFCRLTRRQIIIVHQKDPGL 121 (381)
T ss_dssp HTTEEEEEEESS--HHHH----HHHHHCS-TTS--EEEEEE---CSSSCHHHHHHH-HHHHHHHHCT--EEEEETT-HHH
T ss_pred HhCcEEEEECCCCchhhh----hhhhhcCCCCC--eEEEEECCCCCCccHHHHHHH-HHHHHHHhhcCceEEEecCCHHH
Confidence 457999999999887444 44444445444 7889988887431 1111111 122221 134556777778777
Q ss_pred HHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc---CC
Q psy1765 128 IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TG 204 (867)
Q Consensus 128 ~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A---~G 204 (867)
+.|-..+= = .+.+... .. | +-|.+.++-.|+..| ..
T Consensus 122 A~Af~~aG----y----------------------------~~il~~~--g~---V----R~GKgEGMiiGillAk~~g~ 160 (381)
T PF09488_consen 122 AEAFKEAG----Y----------------------------PEILDED--GL---V----RNGKGEGMIIGILLAKAPGK 160 (381)
T ss_dssp HHHHHHTT----------------------------------TTB-TT--SS---B-----SSHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHcC----c----------------------------HHHhCCC--Cc---e----ecCchHHHHHHHHHHHhcCC
Confidence 77632111 0 0001000 11 2 457788888886655 56
Q ss_pred CEEEEEcCCcccCccchHHHHHHHH
Q psy1765 205 KVLVFLDSHIEVNTHWLEPLLVPIA 229 (867)
Q Consensus 205 d~llfLDaD~~v~p~wLe~Ll~~l~ 229 (867)
+||-|+|+|-.+ |+.+.+.++.++
T Consensus 161 ~YVGFvDADNyi-PGaV~EYvk~yA 184 (381)
T PF09488_consen 161 RYVGFVDADNYI-PGAVNEYVKDYA 184 (381)
T ss_dssp SEEEE--TTBS--HHHHHHHHHHHH
T ss_pred ceEeEeeccCCC-cchHHHHHHHHH
Confidence 999999999876 556666666554
No 114
>PF11735 CAP59_mtransfer: Cryptococcal mannosyltransferase 1 ; InterPro: IPR021047 The capsule of pathogenic fungi is a complex polysaccharide whose formation is determined by a number of enzymes including, most importantly, alpha-1,3-mannosyltransferase 1 [, ]. It is responsible for addition of mannose residues in an alpha-1,3 linkage to a polymannosly precursor.
Probab=91.36 E-value=0.73 Score=48.81 Aligned_cols=174 Identities=15% Similarity=0.117 Sum_probs=87.8
Q ss_pred EEEEeCCCCCCcCchHHHHHHHhhcC--CCCEEEEEcCC-------------Cc-CchhHHhHhhhhc---------CCC
Q psy1765 151 IILVNDFSEYPSNLHGEVESFVKGLN--NGRVHLYRTSK-------------RE-GLIRARMFGAKYA---------TGK 205 (867)
Q Consensus 151 IIVVDn~Std~~~~~~~l~~~~~~~~--~~~vrii~~~~-------------n~-G~a~ArN~G~~~A---------~Gd 205 (867)
|-|+++||+| .|.+.|..+...+. +-.-+|...+. +. =++..||.+++-- .-+
T Consensus 37 vSIyE~~S~D--~T~~~L~~L~~~L~~lgv~~~i~~~~~~~~~~~~~~~~~~RI~~LA~lRN~ALePL~~~~~~~~~~fd 114 (241)
T PF11735_consen 37 VSIYESGSWD--GTKEALRALDAELDALGVPHSIVLSDITHRDEIERPPRLRRIEYLAELRNRALEPLYDLARKRGRRFD 114 (241)
T ss_pred EEEEeCCCCc--cHHHHHHHHHHHHHhCCCCeEEEeCCCcccccccccchhhhHHHHHHHHhHHHHHHHhhhhccCCCcC
Confidence 6689999999 77888887664331 11222322111 11 1368899997632 236
Q ss_pred EEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccc--cccccccccccccccccCCcCcCCCCCCCC
Q psy1765 206 VLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSS--ALVRGGFNWGLHFKWENLPKGTLNSSEDFI 283 (867)
Q Consensus 206 ~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~--~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~ 283 (867)
-|+||| |+.+.+.=+-.|+..-......++|+ ++.+.+..| |... ....|.....- .|..+....-.......
T Consensus 115 ~VlfLN-DV~f~~~Dil~LL~~~~~~~~~~aCa-mDf~~~~~f-YD~wv~RD~~G~~~~~~--~~p~f~~~~~~~~~~~~ 189 (241)
T PF11735_consen 115 KVLFLN-DVFFCPEDILELLFTRNRGNYDMACA-MDFINPPKF-YDTWVLRDIEGDSFGSP--FWPYFRSASSRDRLRRG 189 (241)
T ss_pred EEEEec-CcccCHHHHHHHHhhcCcccccchhh-cccccCccc-cceeEEecCCCCccccc--cCcCcCCHHHHHHHhcC
Confidence 799999 88776655555555444233345554 333222221 1110 00111110000 11111111111122335
Q ss_pred CcccccccccceEeEeHHHHHHhC--CCCC--CCCCCcccchHHHHHHHHcC
Q psy1765 284 KPILSPTMAGGLFAIDRQYFDSLG--QYDA--GLEIWGGENLELSFRIWMCG 331 (867)
Q Consensus 284 ~p~~~~~~~G~~~airR~~f~~vG--gfDe--~~~~~G~ED~Dls~Rl~~~G 331 (867)
.|+++-...+|..+++.+.|..-+ -|.- .....++|-.-++.-+|..|
T Consensus 190 ~pv~V~SCWnG~va~~a~pf~~~~~lrFR~~~~~~~~~sEc~Li~~D~~~~g 241 (241)
T PF11735_consen 190 DPVPVFSCWNGMVAFDAEPFLPPTPLRFRADSEGECEASECCLIHADLWRWG 241 (241)
T ss_pred CCeeeecccCCcccccchhhccCCceeecCCCCCceeccchhHhHhhhhhcC
Confidence 677788888999999999998865 2322 22223455555555555544
No 115
>PF11316 Rhamno_transf: Putative rhamnosyl transferase ; InterPro: IPR021466 This bacterial family of proteins has no known function.
Probab=91.36 E-value=0.87 Score=48.13 Aligned_cols=62 Identities=8% Similarity=0.041 Sum_probs=40.1
Q ss_pred hHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhh---hhcCCCEE--EEEcCCcccCccchHHHHHHHH
Q psy1765 165 HGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGA---KYATGKVL--VFLDSHIEVNTHWLEPLLVPIA 229 (867)
Q Consensus 165 ~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~---~~A~Gd~l--lfLDaD~~v~p~wLe~Ll~~l~ 229 (867)
.+.|.++.+.. +.++++..+... ...+....+ ....++++ +-||+|+-++.++++.+-+.+.
T Consensus 74 ~~rL~~l~~~~--p~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~RLDdDDAl~~dFV~rlr~~a~ 140 (234)
T PF11316_consen 74 RERLRDLLADY--PQFRIVFRPPGP-HRDAMRRAINAARRDGADPVLQFRLDDDDALHRDFVARLRRAAA 140 (234)
T ss_pred HHHHHHHhccC--CCcEEEecCCch-HHHHHHHHHhhhccCCCCEEEEEEECCcchhhHHHHHHHHHHHH
Confidence 44566666666 667777666332 333333333 22345554 4579999999999999999875
No 116
>TIGR02460 osmo_MPGsynth mannosyl-3-phosphoglycerate synthase. This family consists of examples of mannosyl-3-phosphoglycerate synthase (MPGS), which together mannosyl-3-phosphoglycerate phosphatase (MPGP) comprises a two-step pathway for mannosylglycerate biosynthesis. Mannosylglycerate is a compatible solute that tends to be restricted to extreme thermophiles of archaea and bacteria. Note that in Rhodothermus marinus, this pathway is one of two; the other is condensation of GDP-mannose with D-glycerate by mannosylglycerate synthase.
Probab=91.20 E-value=1.7 Score=47.63 Aligned_cols=131 Identities=19% Similarity=0.193 Sum_probs=72.3
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCC-CchhhHHHHHhhcCC--CceEEEEeccchhh
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS-NLHGEVETFVKGLND--GRVHLYRTSKREGL 127 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s-~~~~~~~~~~~~~~~--~~~~~~~~~~~~gi 127 (867)
+-...||||+-||....| +-||.--|..- =||||-|.+..+- ..+.+.+ -++.+-. .|-.++..++.-|+
T Consensus 49 ~~~maIVVP~KdE~l~ll----eGVL~gIPh~c--~iIvVSNS~r~~~d~f~~E~d-~~~~f~~~t~r~~i~vHQkDp~l 121 (381)
T TIGR02460 49 LGKTAIVVPVKNEKLHLL----EGVLSGIPHEC--PIIIVSNSKREPPDRFKMEVD-LIRHFSNLTHRKIIIIHQKDPAL 121 (381)
T ss_pred HhCcEEEEEcCCCchhHH----hhHhhcCCCCC--eEEEEeCCCCCChhHHHHHHH-HHHHHHHhhcCceEEEEcCCHHH
Confidence 357899999999887444 44444444444 6888888776441 1111111 1111111 23335566666666
Q ss_pred HHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc---CC
Q psy1765 128 IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TG 204 (867)
Q Consensus 128 ~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A---~G 204 (867)
+.|-..+= ..+.+. .=..+ +-|.+.++-.|+..| ..
T Consensus 122 a~Af~~~g--------------------------------y~~il~-----~~g~V----R~GKgEGMiiG~lLAk~~g~ 160 (381)
T TIGR02460 122 AEAFKEVG--------------------------------YTSILG-----ENGRV----RSGKGEGMLLGLLLAKAIGA 160 (381)
T ss_pred HHHHHHcC--------------------------------chhhhC-----CCCce----ecCcchHHHHHHHHHHHhCC
Confidence 66532111 000110 11123 346667777776555 56
Q ss_pred CEEEEEcCCcccCccchHHHHHHHHh
Q psy1765 205 KVLVFLDSHIEVNTHWLEPLLVPIAE 230 (867)
Q Consensus 205 d~llfLDaD~~v~p~wLe~Ll~~l~~ 230 (867)
+||-|+|+|-.+ |+.+.+.+..++.
T Consensus 161 ~YVGFiDaDNyi-PGaV~EYvk~yAa 185 (381)
T TIGR02460 161 EYVGFVDADNYF-PGAVNEYVKIYAA 185 (381)
T ss_pred ceEeEeecccCC-CchHHHHHHHHHh
Confidence 999999999977 4666666666553
No 117
>PRK14503 mannosyl-3-phosphoglycerate synthase; Provisional
Probab=90.95 E-value=1.8 Score=47.67 Aligned_cols=131 Identities=19% Similarity=0.191 Sum_probs=71.8
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCC-CchhhHHHHHhhcC--CCceEEEEeccchhh
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS-NLHGEVETFVKGLN--DGRVHLYRTSKREGL 127 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s-~~~~~~~~~~~~~~--~~~~~~~~~~~~~gi 127 (867)
+-...||||+-||....|. -||.--|.+- =||||-|.+..+- ..+.+.+. ++.+- -.|-.++..++.-|+
T Consensus 50 ~~~mAIVVP~KdE~l~lle----GVL~gIPh~c--~iIvVSNS~r~~~d~f~~E~dl-v~~f~~~t~r~~i~vHQkDp~l 122 (393)
T PRK14503 50 LGRMAIVVPVKNERLKLLE----GVLKGIPHEC--PIIVVSNSKREPPDRFKLEVDL-VRHFYRLTQRPIIIVHQKDPGL 122 (393)
T ss_pred HhCcEEEEEcCCCchhHHh----hHhhcCCCCC--eEEEEeCCCCCCchHHHHHHHH-HHHHHhhhcCceEEEEcCCHHH
Confidence 3568999999998874444 4444444444 6888887765441 11111111 11111 123335566666666
Q ss_pred HHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc---CC
Q psy1765 128 IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TG 204 (867)
Q Consensus 128 ~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A---~G 204 (867)
+.|-..+= ..+.+. .=..| +-|.+.++-.|+..| ..
T Consensus 123 a~Af~~aG--------------------------------yp~il~-----~~g~V----R~GKgEGMiiG~lLAk~~g~ 161 (393)
T PRK14503 123 AEALKEAG--------------------------------YPYILD-----ENGLV----RSGKGEGMIIGLLLAKALGA 161 (393)
T ss_pred HHHHHHcC--------------------------------ChhhhC-----CCCce----ecCcchHHHHHHHHHHHhCC
Confidence 66532111 000110 11123 346667777776555 56
Q ss_pred CEEEEEcCCcccCccchHHHHHHHHh
Q psy1765 205 KVLVFLDSHIEVNTHWLEPLLVPIAE 230 (867)
Q Consensus 205 d~llfLDaD~~v~p~wLe~Ll~~l~~ 230 (867)
+||-|+|+|-.+ |+.+.+.+..++.
T Consensus 162 ~YVGFiDADNyi-PGaV~EYvk~yAA 186 (393)
T PRK14503 162 RYVGFVDADNYI-PGAVNEYVKIYAA 186 (393)
T ss_pred CeEeEeecccCC-CchHHHHHHHHHh
Confidence 999999999977 5666666665553
No 118
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=90.62 E-value=1.1 Score=47.73 Aligned_cols=59 Identities=15% Similarity=0.116 Sum_probs=42.0
Q ss_pred CCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeee
Q psy1765 178 GRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 238 (867)
Q Consensus 178 ~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p 238 (867)
..|++++.+.| -...|-.-...-+.+.|+.+|.|+.++.+.|+...+..++.+..+|+.
T Consensus 52 vpV~~~~~~~n--sLnnRF~p~~~i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf 110 (247)
T PF09258_consen 52 VPVRVVRSSRN--SLNNRFLPDPEIETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGF 110 (247)
T ss_dssp S-EEEEEESSH--HGGGGGS--TT--SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES
T ss_pred ceEEEEecCCc--cHHhcCcCccccCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCC
Confidence 57888887643 123344445566799999999999999999999999999999888863
No 119
>PLN02190 cellulose synthase-like protein
Probab=90.62 E-value=1.4 Score=53.34 Aligned_cols=165 Identities=13% Similarity=0.169 Sum_probs=98.2
Q ss_pred CCCcEEEEEEeCC---CChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhh--HHHHHh---------hcC-CC
Q psy1765 50 TLPSTSVIICFYN---EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGE--VETFVK---------GLN-DG 114 (867)
Q Consensus 50 ~~P~vSVIIp~yN---e~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~--~~~~~~---------~~~-~~ 114 (867)
.+|.|-|.|+++| |+...+..|+-|+++-+||.-..-+-|-|||.+.-+ +.+. ..+|++ ++. -+
T Consensus 91 ~Lp~VDvFV~TaDP~kEPpl~v~nTvLSilA~dYP~eklscYvSDDG~s~LT-~~al~EAa~FA~~WvPFCrK~~IepRa 169 (756)
T PLN02190 91 DLPSVDMFVPTADPVREPPIIVVNTVLSLLAVNYPANKLACYVSDDGCSPLT-YFSLKEASKFAKIWVPFCKKYNVRVRA 169 (756)
T ss_pred cCCcceEEEecCCCCcCCHHHHHHHHHHHHhccCCccccceEEecCCCcHhH-HHHHHHHHHHHhhhcccccccCCCcCC
Confidence 5899999999999 999899999999999999975446789999987642 2211 122222 000 01
Q ss_pred ceEEEE-----------eccchhh------HHHhhhhhhhhcccccc------------------ccceeEEEEEeCCCC
Q psy1765 115 RVHLYR-----------TSKREGL------IRARMFGAKYATGKNRI------------------QSLLHEIILVNDFSE 159 (867)
Q Consensus 115 ~~~~~~-----------~~~~~gi------~~a~~~g~~~a~g~~~~------------------~~~l~EIIVVDn~St 159 (867)
+-.|+- ..+++-+ ...|... |++.... ++|+ +|| .|+ +.
T Consensus 170 Pe~YF~~~~~~~~~~~f~~e~~~~K~eYee~k~ri~~---a~~~~~~~~~~~~~~~~~~~~~~dH~~ii-qVl-l~~-~~ 243 (756)
T PLN02190 170 PFRYFLNPPVATEDSEFSKDWEMTKREYEKLSRKVED---ATGDSHWLDAEDDFEAFSNTKPNDHSTIV-KVV-WEN-KG 243 (756)
T ss_pred HHHHhcCCCCCCCCchhHHHHHHHHHHHHHHHHHHHh---hccCCCCcccCCcccccCCCCCCCCccce-EEE-ecC-CC
Confidence 111111 0111111 1112211 2111111 1111 222 233 21
Q ss_pred CCcCchHHHHHHHhhcCCCCEEEEEcCCCcC-----chhHHhHhhhhc----CCCEEEEEcCCccc-CccchHHHHHHHH
Q psy1765 160 YPSNLHGEVESFVKGLNNGRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPLLVPIA 229 (867)
Q Consensus 160 d~~~~~~~l~~~~~~~~~~~vrii~~~~n~G-----~a~ArN~G~~~A----~Gd~llfLDaD~~v-~p~wLe~Ll~~l~ 229 (867)
+ .. + -..+ |.+.++..+|+.| .++|+|.-++.+ .++||+-||+|..+ ++..+...+=.+.
T Consensus 244 ~-~~-----~--~~~l--P~LVYvSREKrP~~~Hh~KAGAmNaLlRVSavmtNaP~iLnlDCDmY~Nns~~~r~AmCf~l 313 (756)
T PLN02190 244 G-VG-----D--EKEV--PHLVYISREKRPNYLHHYKAGAMNFLVRVSGLMTNAPYMLNVDCDMYANEADVVRQAMCIFL 313 (756)
T ss_pred C-cc-----c--cccC--ceEEEEeccCCCCCCcccccchhHHHHHHhhhhccCCeEEEecCccccCchhHHHHhhhhhc
Confidence 1 00 0 0123 7889998888877 688999988764 79999999999988 6888888887776
Q ss_pred hc
Q psy1765 230 ER 231 (867)
Q Consensus 230 ~~ 231 (867)
..
T Consensus 314 d~ 315 (756)
T PLN02190 314 QK 315 (756)
T ss_pred CC
Confidence 43
No 120
>KOG4315|consensus
Probab=90.11 E-value=0.17 Score=55.91 Aligned_cols=27 Identities=48% Similarity=0.939 Sum_probs=23.2
Q ss_pred CCCCcchHHHHHHhcCCCCCccCCCCC
Q psy1765 817 SIPNENKGFRMLSKMGWKAGQTLGKDE 843 (867)
Q Consensus 817 ~~~~~~~g~~~~~~~g~~~g~~lg~~~ 843 (867)
.|.-+.-|.+||+-||||||.|+||..
T Consensus 150 aiPVe~FGlAmLrG~GWkpg~gigk~~ 176 (455)
T KOG4315|consen 150 AIPVEGFGLAMLRGMGWKPGPGIGKNK 176 (455)
T ss_pred cCchhHHHHHHHhcCCCCCCCCcCcCC
Confidence 355567899999999999999999963
No 121
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=89.67 E-value=13 Score=38.12 Aligned_cols=54 Identities=13% Similarity=0.028 Sum_probs=39.7
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~ 233 (867)
.+.+.......|.+.+.-.|++....+.++++++|..+++ .+..+++.+.+...
T Consensus 71 ~~~~~~~~~~~G~~~~l~~a~~~~~~~~~lv~~~D~~~~~-~~~~~l~~~~~~~~ 124 (223)
T cd06915 71 RIYYVIEPEPLGTGGAIKNALPKLPEDQFLVLNGDTYFDV-DLLALLAALRASGA 124 (223)
T ss_pred eEEEEECCCCCcchHHHHHHHhhcCCCCEEEEECCcccCC-CHHHHHHHHHhCCC
Confidence 3445555567888888888888877788999999997754 47778887765443
No 122
>PF03214 RGP: Reversibly glycosylated polypeptide; InterPro: IPR004901 Alpha-1,4-glucan-protein synthase catalyses the reaction: protein + UDP-D-glucose = alpha-D-glucosyl-protein + UDP The enzyme has a possible role in the synthesis of cell wall polysaccharides in plants []. It is found associated with the cell wall, with the highest concentrations in the plasmodesmata. It is also located in the Golgi apparatus.; GO: 0008466 glycogenin glucosyltransferase activity, 0016758 transferase activity, transferring hexosyl groups, 0007047 cellular cell wall organization, 0030244 cellulose biosynthetic process, 0005618 cell wall, 0030054 cell junction
Probab=89.63 E-value=1.1 Score=48.86 Aligned_cols=48 Identities=15% Similarity=0.160 Sum_probs=39.0
Q ss_pred chhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeee
Q psy1765 191 LIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 238 (867)
Q Consensus 191 ~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p 238 (867)
-.+.||.|.-.|+-+|++++|.||.+..++.-..++.+.++...+.+|
T Consensus 79 ~~a~R~fGyL~s~~~yivsiDDD~~P~~D~~g~~~~~v~qh~~~~~~~ 126 (348)
T PF03214_consen 79 GDACRNFGYLVSKKDYIVSIDDDCLPAKDDFGTHIDAVAQHVENLSTP 126 (348)
T ss_pred ccchhhhHhhhcccceEEEEccccccccCCccceehhhhccceeeecc
Confidence 347899999999999999999999998888888878777765444443
No 123
>PF13733 Glyco_transf_7N: N-terminal region of glycosyl transferase group 7; PDB: 2AGD_B 3EE5_A 2AE7_B 2AEC_A 2FYA_A 2AES_B 2AH9_A 2FYB_A 2FY7_A 3LW6_A ....
Probab=89.21 E-value=1.3 Score=42.22 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=19.6
Q ss_pred cCchhHHhHhhhhc----CCCEEEEEcCCcccCcc
Q psy1765 189 EGLIRARMFGAKYA----TGKVLVFLDSHIEVNTH 219 (867)
Q Consensus 189 ~G~a~ArN~G~~~A----~Gd~llfLDaD~~v~p~ 219 (867)
+..+.-.|.|+..| .-|.++|=|-|..+..+
T Consensus 93 FNRg~L~NvGf~eA~~~~~~dc~ifHDVDllP~~~ 127 (136)
T PF13733_consen 93 FNRGKLMNVGFLEALKDDDFDCFIFHDVDLLPEND 127 (136)
T ss_dssp --HHHHHHHHHHHHHHHS--SEEEEE-TTEEESBT
T ss_pred CchhhhhhHHHHHHhhccCCCEEEEecccccccCC
Confidence 34456677777666 35899999999987654
No 124
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=88.26 E-value=14 Score=39.01 Aligned_cols=126 Identities=11% Similarity=0.169 Sum_probs=69.8
Q ss_pred CCCEEEEEcCCcc-cCccchHHHHHHHHhcCCceeeeEEeeec------CCCceeccccccccccccccccccccC--Cc
Q psy1765 203 TGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPIIDIIN------ADTFQYTSSALVRGGFNWGLHFKWENL--PK 273 (867)
Q Consensus 203 ~Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~------~~~~~~~~~~~~~g~f~~~l~~~~~~~--~~ 273 (867)
..++++++|+|.- +++..|+.+++.+.+...+++.+.+...+ +++..+.. ..++. .+.|....+ .+
T Consensus 87 ~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d~~~~~~p~~vk~v~---~~~g~--alyfsr~~ip~~R 161 (238)
T TIGR00466 87 DDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHDAEEAFNPNAVKVVL---DSQGY--ALYFSRSLIPFDR 161 (238)
T ss_pred CCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCCHHHccCCCceEEEe---CCCCe--EEEecCCCCCCCC
Confidence 5689999999986 59999999999986544455554443322 11211110 00110 111211111 11
Q ss_pred CcCCCCCCCCCcccc-cccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEEc
Q psy1765 274 GTLNSSEDFIKPILS-PTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIP 338 (867)
Q Consensus 274 ~~~~~~~~~~~p~~~-~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~P 338 (867)
...... ..|... ....-|..+++++++++.-.+.+...-- .|.+|. +|+...|++|.++.
T Consensus 162 ~~~~~~---~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~-~e~leq-lr~le~g~~i~~~~ 222 (238)
T TIGR00466 162 DFFAKR---QTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEE-IEKLEQ-LRVLYYGEKIHVKI 222 (238)
T ss_pred Cccccc---ccccccceeEEEEEEeCCHHHHHHHHhCCCCcccc-cchhHH-HhhhhcCCceEEEE
Confidence 111000 111110 1223578999999999977776654221 466664 79999999997654
No 125
>PLN02436 cellulose synthase A
Probab=88.24 E-value=1.9 Score=54.03 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=99.1
Q ss_pred CCCCcEEEEEEeCC---CChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchh--hHHHHHh--------------
Q psy1765 49 STLPSTSVIICFYN---EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG--EVETFVK-------------- 109 (867)
Q Consensus 49 ~~~P~vSVIIp~yN---e~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~--~~~~~~~-------------- 109 (867)
+.+|.|-|.|++-+ |+.-.+..||-||++-+||.-..-+.|-|||.+.-+ +.+ |..+|++
T Consensus 362 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT-f~AL~EAa~FAk~WvPFCkK~~IepR 440 (1094)
T PLN02436 362 SELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLT-FEALSETSEFARKWVPFCKKFSIEPR 440 (1094)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHH-HHHHHHHHHHHHhhcccccccCCCcC
Confidence 56999999999964 666689999999999999976557889999976541 111 1122222
Q ss_pred ---hcCCCceEE-------EEeccchhh------HHHhhhhhhh------------hcccccc-------ccceeEEEEE
Q psy1765 110 ---GLNDGRVHL-------YRTSKREGL------IRARMFGAKY------------ATGKNRI-------QSLLHEIILV 154 (867)
Q Consensus 110 ---~~~~~~~~~-------~~~~~~~gi------~~a~~~g~~~------------a~g~~~~-------~~~l~EIIVV 154 (867)
..+.+.+.. ....+++-+ ...|+.++.. +.|..=. ++|+ +|+ .
T Consensus 441 aPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~vp~~~~~m~dgt~W~g~~~~dHp~II-qVl-l 518 (1094)
T PLN02436 441 APEWYFSQKMDYLKNKVHPAFVRERRAMKREYEEFKVKINALVATAQKVPEDGWTMQDGTPWPGNNVRDHPGMI-QVF-L 518 (1094)
T ss_pred CHHHHhhccCCcccccCChhHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhhhccCccCCCCCCCCCccce-EEE-e
Confidence 111111111 111122222 1233333321 2221000 1111 222 2
Q ss_pred eCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcC-----chhHHhHhhhhc----CCCEEEEEcCCccc-CccchHHH
Q psy1765 155 NDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPL 224 (867)
Q Consensus 155 Dn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G-----~a~ArN~G~~~A----~Gd~llfLDaD~~v-~p~wLe~L 224 (867)
|+ +.+.. .+. ..+ |.+.++..+|+.| .|+|+|+.++.+ .++||+-||.|-.+ ++..+...
T Consensus 519 ~~-~~~~d-----~~g--~~L--P~LVYVSREKRPg~~Hh~KAGAMNaLlRVSavmTNaP~ILNLDCDmYiNns~a~r~A 588 (1094)
T PLN02436 519 GH-SGVRD-----VEG--NEL--PRLVYVSREKRPGFDHHKKAGAMNSLIRVSAVLSNAPYLLNVDCDHYINNSKALREA 588 (1094)
T ss_pred cC-CCCcc-----ccc--ccC--ceEEEEecccCCCCCcchhhhhhhhhhhhheeecCCceEEecccccccCchHHHHHh
Confidence 32 22110 000 113 7899999888877 578999998865 79999999999987 78888888
Q ss_pred HHHHHh
Q psy1765 225 LVPIAE 230 (867)
Q Consensus 225 l~~l~~ 230 (867)
+=.+..
T Consensus 589 MCfllD 594 (1094)
T PLN02436 589 MCFMMD 594 (1094)
T ss_pred hhhhcC
Confidence 877764
No 126
>PRK10018 putative glycosyl transferase; Provisional
Probab=88.14 E-value=1.2 Score=48.38 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=28.6
Q ss_pred CCceEEEEeccchhhHHHhhhhhhhhcccccc
Q psy1765 113 DGRVHLYRTSKREGLIRARMFGAKYATGKNRI 144 (867)
Q Consensus 113 ~~~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~ 144 (867)
+.+|++++.++|.|++.|+|.|+.+|+|++++
T Consensus 59 ~~ri~~i~~~~n~G~~~a~N~gi~~a~g~~I~ 90 (279)
T PRK10018 59 DPRITYIHNDINSGACAVRNQAIMLAQGEYIT 90 (279)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 45788889999999999999999999999764
No 127
>PLN03180 reversibly glycosylated polypeptide; Provisional
Probab=87.56 E-value=1.5 Score=47.89 Aligned_cols=31 Identities=19% Similarity=0.098 Sum_probs=27.0
Q ss_pred chhHHhHhhhhcCCCEEEEEcCCcccCccch
Q psy1765 191 LIRARMFGAKYATGKVLVFLDSHIEVNTHWL 221 (867)
Q Consensus 191 ~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wL 221 (867)
-.+.||.|.-.++.+|++++|.||.+..+|=
T Consensus 81 ~~a~R~fGyL~s~~~yivsiDDD~~Pa~d~~ 111 (346)
T PLN03180 81 DSACRCFGYLVSKKKYIFTIDDDCFVAKDPS 111 (346)
T ss_pred cccchhhhheeecceEEEEECCCCCCCCCCc
Confidence 3478999999999999999999999977753
No 128
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=86.78 E-value=4.1 Score=39.79 Aligned_cols=81 Identities=12% Similarity=0.263 Sum_probs=60.1
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcC-CCcCchhHHhHhhhhc-CCCEEEEEcCCcc-cCccchHHHH
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYA-TGKVLVFLDSHIE-VNTHWLEPLL 225 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~-~n~G~a~ArN~G~~~A-~Gd~llfLDaD~~-v~p~wLe~Ll 225 (867)
.+|+||-+. +.+..++.. ..++++.++ ...|...+.-.|+..+ ..+.++++.+|.. ++++-++.++
T Consensus 40 ~~Ivvv~~~--------~~~~~~~~~---~~~~~v~~~~~~~G~~~sl~~a~~~~~~~~~vlv~~~D~p~~~~~~l~~l~ 108 (160)
T PF12804_consen 40 DDIVVVTGE--------EEIYEYLER---YGIKVVVDPEPGQGPLASLLAALSQLPSSEPVLVLPCDQPFLSPELLRRLL 108 (160)
T ss_dssp SEEEEEEST--------HHHHHHHTT---TTSEEEE-STSSCSHHHHHHHHHHTSTTSSEEEEEETTETTS-HHHHHHHH
T ss_pred ceEEEecCh--------HHHHHHHhc---cCceEEEeccccCChHHHHHHHHHhcccCCCcEEEeCCccccCHHHHHHHH
Confidence 577777654 123333333 367777775 4689999999999998 8999999999995 5999999999
Q ss_pred HHHHhcCCceeeeEE
Q psy1765 226 VPIAERTNTVTVPII 240 (867)
Q Consensus 226 ~~l~~~~~~vv~p~i 240 (867)
+.+.+++..++++..
T Consensus 109 ~~~~~~~~~i~~~~~ 123 (160)
T PF12804_consen 109 EALEKSPADIVVPVF 123 (160)
T ss_dssp HHHHHTTTSEEEEEE
T ss_pred HHHhccCCcEEEEEE
Confidence 999877766666543
No 129
>PF03498 CDtoxinA: Cytolethal distending toxin A/C family; InterPro: IPR003558 Escherichia coli, Haemophilus spp and Campylobacter spp. all produce a toxin that is seen to cause distension in certain cell lines [, ], which eventually disintegrate and die. This novel toxin, termed cytolethal distending toxin (cdt), has three subunits: A, B and C. Their sizes are approx. 27.7, 29.5 and 19.9kDa respectively [], and they appear to be entirely novel []. Further research on the complete toxin has revealed that it blocks the cell cycle at stage G2, through inactivation of the cyclin-dependent kinase Cdk1, and without induction of DNA breaks. This leads to multipolar abortive mitosis and micronucleation, associated with centrosomal amplification []. The roles of each subunit are unclear, but it is believed that they have separate roles in pathogenicity. This entry represents the A and C subunits.; GO: 0009405 pathogenesis; PDB: 2F2F_A 1SR4_C.
Probab=86.55 E-value=1.4 Score=43.10 Aligned_cols=77 Identities=22% Similarity=0.242 Sum_probs=43.5
Q ss_pred eceeeecCCCccEEEe-CCCCCCCcceeeeeeeccceeeecccCcccccCCChhhhhhhhhccccCCCCCcccccccccc
Q psy1765 597 ELLCLDAGATKPKLTK-CHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYT 675 (867)
Q Consensus 597 ~~~CLd~~g~~v~l~~-C~~~~~~Q~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~W~~~~~~~~ 675 (867)
.+.||.+.+..+.... |......|.| ++.+-. +
T Consensus 61 ~~~CL~~~~~G~~~~~~C~~~~~~q~F-~iiPtt---------------------------------------------t 94 (150)
T PF03498_consen 61 TGTCLAAYGNGVFHYKSCDQDNLEQVF-SIIPTT---------------------------------------------T 94 (150)
T ss_dssp TSEEEEEETTCEEEE--TTTCHGHH-E-EEEEBT---------------------------------------------T
T ss_pred CCcceeecCCCeEeecccCCCChhceE-EEEEcC---------------------------------------------C
Confidence 3569999776666666 9987555664 332111 2
Q ss_pred cceEEEecCCCceEeecCCC--CCCCceEEecCCCC---CCCccEEEcc
Q psy1765 676 SHFHIRLSGTDLCLTSKVDK--TKGSPLVLKKCDEL---SKTQRWSKTD 719 (867)
Q Consensus 676 ~~~~i~~~~sg~CLd~~~~~--~~g~~v~l~~C~~~---~~~Q~W~~~~ 719 (867)
...+|++..++.||.+.... .....+.+.+|+.. ...|+|.++.
T Consensus 95 gAVQIks~~~~~Cl~~~~~~~~~~~~~i~l~~Cd~~~~~~l~~lw~itP 143 (150)
T PF03498_consen 95 GAVQIKSLSTGECLQTFNNSRTPIYYSIGLTPCDKSKEINLDQLWFITP 143 (150)
T ss_dssp S-EEEEETTT--EEEE-STTSS-SSEEEEEE---S-EEETGGGEEEEE-
T ss_pred CcEEEEecCCCceEEecCCCceeEEeeEEeeeCCCcCCCCHHHcEEEcC
Confidence 23689999999999983222 12347889999431 3468998875
No 130
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=86.49 E-value=30 Score=37.12 Aligned_cols=141 Identities=18% Similarity=0.168 Sum_probs=89.6
Q ss_pred CCEEEEEcCCCcCchhHHhHhhhhcC-CCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceecccccc
Q psy1765 178 GRVHLYRTSKREGLIRARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALV 256 (867)
Q Consensus 178 ~~vrii~~~~n~G~a~ArN~G~~~A~-Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~ 256 (867)
.++.++.+++..|++.|.-.|-.... .++++.|.+..... =|+.++..+.+...++......+-|+..|....
T Consensus 73 v~itY~~Q~~p~GlA~Av~~a~~fv~~~~f~l~LGDNi~~~--~l~~~~~~~~~~~~ga~i~~~~V~dP~rfGV~e---- 146 (286)
T COG1209 73 VDITYAVQPEPDGLAHAVLIAEDFVGDDDFVLYLGDNIFQD--GLSELLEHFAEEGSGATILLYEVDDPSRYGVVE---- 146 (286)
T ss_pred cceEEEecCCCCcHHHHHHHHHhhcCCCceEEEecCceecc--ChHHHHHHHhccCCCcEEEEEEcCCcccceEEE----
Confidence 58999999999999999999999987 67777776555544 788888888765444333333333333222110
Q ss_pred ccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEE
Q psy1765 257 RGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAM 336 (867)
Q Consensus 257 ~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~ 336 (867)
|+- ..+-..+ ...+..| ++.....|+.+++.++|+.+-..-+.-..= .|=+|.--.+...|..+..
T Consensus 147 ---~d~--~~~v~~l-------~EKP~~P-~SNlAvtGlY~~d~~Vf~~~~~ikPS~RGE-lEITd~i~~~i~~G~~~~~ 212 (286)
T COG1209 147 ---FDE--DGKVIGL-------EEKPKEP-KSNLAVTGLYFYDPSVFEAIKQIKPSARGE-LEITDAIDLYIEKGYLVVA 212 (286)
T ss_pred ---EcC--CCcEEEe-------EECCCCC-CCceeEEEEEEeChHHHHHHHcCCCCCCCc-eEehHHHHHHHHcCcEEEE
Confidence 100 0000000 1112223 233444578899999999998776655432 5778888889999998876
Q ss_pred Ec
Q psy1765 337 IP 338 (867)
Q Consensus 337 ~P 338 (867)
..
T Consensus 213 ~~ 214 (286)
T COG1209 213 IL 214 (286)
T ss_pred EE
Confidence 65
No 131
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=86.45 E-value=5.4 Score=40.71 Aligned_cols=121 Identities=14% Similarity=0.178 Sum_probs=68.1
Q ss_pred hHHhHhhhhcC-CCEEEEEcCCcccCccchHHHHHHHHhc--CCceeeeEEeeecCCCceeccccccccccccccccccc
Q psy1765 193 RARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIAER--TNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWE 269 (867)
Q Consensus 193 ~ArN~G~~~A~-Gd~llfLDaD~~v~p~wLe~Ll~~l~~~--~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~ 269 (867)
.+.+.+.+... .+|++.+|+|+.+.+.-|...|...... ...+.+..... ....+. ...+|.
T Consensus 69 ~~~~w~~~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~----------~~~~r~-----~~~kw~ 133 (195)
T PF01762_consen 69 AGLKWASKHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKN----------GPPIRD-----PSSKWY 133 (195)
T ss_pred HHHHHHHhhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccC----------Cccccc-----cccCce
Confidence 44555555554 8999999999999888777777766111 11222211100 000000 001111
Q ss_pred cCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEE
Q psy1765 270 NLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLA 335 (867)
Q Consensus 270 ~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~ 335 (867)
.+..... ...-.+.+.|+++++++++.+.+-..-.....+..||+=+++=+...|.+..
T Consensus 134 -v~~~~y~------~~~yP~y~~G~~yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~ 192 (195)
T PF01762_consen 134 -VSEEEYP------DDYYPPYCSGGGYVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPI 192 (195)
T ss_pred -eeeeecc------cccCCCcCCCCeEEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCcc
Confidence 1111111 1112357789999999999988865433344444899999887777776543
No 132
>PLN02917 CMP-KDO synthetase
Probab=84.06 E-value=24 Score=38.72 Aligned_cols=160 Identities=12% Similarity=0.144 Sum_probs=82.5
Q ss_pred HHHHHHhhcCCCCEEEEEc--CCCcCchhHHhHhhhhcC--CCEEEEEcCCcc-cCccchHHHHHHHHhcCCceeeeEEe
Q psy1765 167 EVESFVKGLNNGRVHLYRT--SKREGLIRARMFGAKYAT--GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPIID 241 (867)
Q Consensus 167 ~l~~~~~~~~~~~vrii~~--~~n~G~a~ArN~G~~~A~--Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~~~vv~p~i~ 241 (867)
.+.+++... .+.++.+ ....|.+++. .|++... .|+++++++|.- +.+..|+.+++.+.++...++...+.
T Consensus 99 ~I~~~~~~~---~v~vi~~~~~~~~GT~~~~-~a~~~l~~~~d~Vlil~gD~PlI~~~tI~~li~~~~~~~~~iv~t~~~ 174 (293)
T PLN02917 99 RIAECCRGF---GADVIMTSESCRNGTERCN-EALKKLEKKYDIVVNIQGDEPLIEPEIIDGVVKALQAAPDAVFSTAVT 174 (293)
T ss_pred HHHHHHHHc---CCEEEeCCcccCCchHHHH-HHHHhccCCCCEEEEecCCcCCCCHHHHHHHHHHHHhcCCceEEEEee
Confidence 344444433 4555543 3345666653 5665553 689999999997 49999999999887655433332222
Q ss_pred eecC-CCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCC--CCcc
Q psy1765 242 IINA-DTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLE--IWGG 318 (867)
Q Consensus 242 ~i~~-~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~--~~G~ 318 (867)
.++. +...|...-..+..-+-.+.|....++.. ....... ........|+++++++.+..+...+++-. .|+-
T Consensus 175 ~~~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~-kd~~~~~---~~i~~~n~Giy~f~~~~L~~l~~l~~~n~e~e~yL 250 (293)
T PLN02917 175 SLKPEDASDPNRVKCVVDNQGYAIYFSRGLIPYN-KSGKVNP---QFPYLLHLGIQSYDAKFLKIYPELPPTPLQLEEDL 250 (293)
T ss_pred ecCHHHhcCCCceEEEECCCCeEEEeecCcCCcC-CCccccc---ccceEEEEEEEEeCHHHHHHHHcCCCCcccchhcc
Confidence 2221 11222211000110000112221112211 0000000 11234567899999999988777666421 1223
Q ss_pred cchHHHHHHHHcCCeEEEEc
Q psy1765 319 ENLELSFRIWMCGGSLAMIP 338 (867)
Q Consensus 319 ED~Dls~Rl~~~G~~i~~~P 338 (867)
||+ |+.+.|++|..++
T Consensus 251 tdl----~~le~G~~i~~~~ 266 (293)
T PLN02917 251 EQL----KVLENGYKMKVIK 266 (293)
T ss_pred HHH----HHHhCCCceEEEE
Confidence 443 5889999986655
No 133
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=83.30 E-value=53 Score=37.09 Aligned_cols=149 Identities=15% Similarity=0.197 Sum_probs=86.6
Q ss_pred HHHHHHHhhc--CCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeee
Q psy1765 166 GEVESFVKGL--NNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDII 243 (867)
Q Consensus 166 ~~l~~~~~~~--~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i 243 (867)
+.+.+++... ...++.++...+..|-++|.-.+.....++-+++++.|...+-+ +..+++.................
T Consensus 59 ~~i~~~~~d~~~~~~~I~y~~e~~~lGTag~l~~a~~~l~~~~f~v~~GDv~~~~d-l~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 59 EQIEEYFGDGEGLGVRITYVVEKEPLGTAGALKNALDLLGGDDFLVLNGDVLTDLD-LSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred HHHHHHHhcccccCCceEEEecCCcCccHHHHHHHHHhcCCCcEEEEECCeeeccC-HHHHHHHHHhccCccEEEEEecC
Confidence 3455555441 23689999999899999999999888888999999999999988 99999998877322221111111
Q ss_pred cCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHH
Q psy1765 244 NADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLEL 323 (867)
Q Consensus 244 ~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dl 323 (867)
+. ..|.......+. ..-..|.-. |. . ....+..+.++.+++++++|+.+..- .....++ |+
T Consensus 138 ~~--~~~Gvv~~~~~~-~~v~~f~ek--p~-------~--~~~~~~~in~Giyi~~~~v~~~i~~~----~~~~~~~-~~ 198 (358)
T COG1208 138 DP--SEFGVVETDDGD-GRVVEFREK--PG-------P--EEPPSNLINAGIYIFDPEVFDYIEKG----ERFDFEE-EL 198 (358)
T ss_pred CC--CcCceEEecCCC-ceEEEEEec--CC-------C--CCCCCceEEeEEEEECHHHhhhcccC----Ccccchh-hH
Confidence 11 111100000000 001111111 10 0 01123567789999999999933211 1112344 77
Q ss_pred HHHHHHcCCeE
Q psy1765 324 SFRIWMCGGSL 334 (867)
Q Consensus 324 s~Rl~~~G~~i 334 (867)
.-++.+.|..+
T Consensus 199 ~~~l~~~~~~v 209 (358)
T COG1208 199 LPALAAKGEDV 209 (358)
T ss_pred HHHHHhCCCcE
Confidence 77888888633
No 134
>PLN02400 cellulose synthase
Probab=83.05 E-value=5.2 Score=50.37 Aligned_cols=176 Identities=16% Similarity=0.171 Sum_probs=98.5
Q ss_pred CCCCcEEEEEEeCC---CChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchh--hHHHHHh--------------
Q psy1765 49 STLPSTSVIICFYN---EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG--EVETFVK-------------- 109 (867)
Q Consensus 49 ~~~P~vSVIIp~yN---e~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~--~~~~~~~-------------- 109 (867)
+.+|.|-|.|++-+ |+.-.+..|+-||++-+||.-..-+.|-|||.+.-+ +.+ |..+|++
T Consensus 353 s~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT-f~Al~Eaa~FA~~WvPFCkK~~IepR 431 (1085)
T PLN02400 353 SQLAPVDVFVSTVDPLKEPPLVTANTVLSILAVDYPVDKVSCYVSDDGSAMLT-FEALSETAEFARKWVPFCKKHNIEPR 431 (1085)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceEEEEecCCchHHH-HHHHHHHHHHHHhhcchhhhcCCCcC
Confidence 56999999999964 666689999999999999976557889999876541 111 1122222
Q ss_pred ---hcCCCceEEE-------Eeccchhh------HHHhhhhhhhhccccccccceeEEEEEeCCCCCCc----CchHHHH
Q psy1765 110 ---GLNDGRVHLY-------RTSKREGL------IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPS----NLHGEVE 169 (867)
Q Consensus 110 ---~~~~~~~~~~-------~~~~~~gi------~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~----~~~~~l~ 169 (867)
..+.+.+... ...+++-+ ...|+.++.+- ...+..|.-...|++.-|. +-..++.
T Consensus 432 aPe~YFs~~~~~~~~~~~~~F~~e~~~mK~eYEe~k~RIe~l~~~-----~~~~~~~~~~m~dgt~W~g~~~~dHp~iIq 506 (1085)
T PLN02400 432 APEFYFAQKIDYLKDKIQPSFVKERRAMKREYEEFKVRINALVAK-----AQKIPEEGWTMQDGTPWPGNNPRDHPGMIQ 506 (1085)
T ss_pred CHHHHhccCCCcccCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-----hccCCccccccccCccCCCCCCCCCchhhh
Confidence 1111111111 01111111 12222222210 0111112212333331000 0001111
Q ss_pred HHHhh--------cCCCCEEEEEcCCCcC-----chhHHhHhhhhc----CCCEEEEEcCCccc-CccchHHHHHHHHh
Q psy1765 170 SFVKG--------LNNGRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPLLVPIAE 230 (867)
Q Consensus 170 ~~~~~--------~~~~~vrii~~~~n~G-----~a~ArN~G~~~A----~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~ 230 (867)
-++.. ..-|.+.++..+++.| .|+|+|+-++.+ .++||+-||.|-.+ ++..+...+=.+..
T Consensus 507 Vll~~~~~~d~~g~~LP~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~ILNlDCDmY~Nns~a~r~AMCf~lD 585 (1085)
T PLN02400 507 VFLGHSGGLDTDGNELPRLVYVSREKRPGFQHHKKAGAMNALIRVSAVLTNGAYLLNVDCDHYFNNSKALKEAMCFMMD 585 (1085)
T ss_pred hhhcCCCCcccccccCceeEEEeccCCCCCCcchhhhhhHHHHHHhhhhcCCceEEecccccccCCchhHHhhhhheec
Confidence 11110 0127888998888877 578999998854 79999999999999 78888877777653
No 135
>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional
Probab=82.09 E-value=7.8 Score=46.93 Aligned_cols=131 Identities=15% Similarity=0.137 Sum_probs=71.3
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCC-CchhhHHHHHhhcC-C-CceEEEEeccchhh
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS-NLHGEVETFVKGLN-D-GRVHLYRTSKREGL 127 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s-~~~~~~~~~~~~~~-~-~~~~~~~~~~~~gi 127 (867)
+-...||||+-||....| +-||.--|.+- =||||-|.+-.+- ..+.+.+. ++.+- . .|-.++..++.-|+
T Consensus 54 ~~~~aivvp~k~e~~~~~----~gvl~~ip~~c--~ii~vsns~r~~~d~~~~e~~~-~~~~~~~~~~~~~~vhq~dp~~ 126 (694)
T PRK14502 54 EKKMAIVLPIKDEDLKVF----EGVLSGIPHDC--LMIVISNSSKQEVDNFKNEKDI-VNRFCRITHRQAIVVHQKNPEL 126 (694)
T ss_pred HhCcEEEEEcCCCchhHH----hhHhhcCCCCC--eEEEEeCCCCCchHHHHHHHHH-HHHHHHhhcCceEEEEcCCHHH
Confidence 346899999999887444 44444444444 6888887776441 11111111 11111 1 23335556666666
Q ss_pred HHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc---CC
Q psy1765 128 IRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA---TG 204 (867)
Q Consensus 128 ~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A---~G 204 (867)
+.|-..+= ..+.+. .=..| +-|.+.++-.|+..| ..
T Consensus 127 a~a~~~~g--------------------------------~~~~~~-----~~~~v----r~gk~egm~~g~~la~~~g~ 165 (694)
T PRK14502 127 ANAIADAG--------------------------------YPELLG-----EDGLI----RSGKAEGMILGIILTMFSGR 165 (694)
T ss_pred HHHHHHcC--------------------------------ChhhhC-----CCCce----ecCcchHHHHHHHHHHhcCC
Confidence 66532111 000010 11123 346667777776555 46
Q ss_pred CEEEEEcCCcccCccchHHHHHHHHh
Q psy1765 205 KVLVFLDSHIEVNTHWLEPLLVPIAE 230 (867)
Q Consensus 205 d~llfLDaD~~v~p~wLe~Ll~~l~~ 230 (867)
+||-|+|+|-.+ |+.+.+.+..++.
T Consensus 166 ~yvgfidadny~-pg~v~ey~~~yaa 190 (694)
T PRK14502 166 DYVGFIDTDNYI-PGAVWEYAKHFAT 190 (694)
T ss_pred ceEeEeeccCCC-CchHHHHHHHHHh
Confidence 999999999987 4566666666553
No 136
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=81.30 E-value=14 Score=38.24 Aligned_cols=58 Identities=17% Similarity=0.082 Sum_probs=44.6
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcC--CCEEEEEcCCc-ccCccchHHHHHHHHhcCCcee
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTNTVT 236 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~--Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~~vv 236 (867)
+++++..+...|.+.+.-.|+.... .+.++++++|. .+.+..+..+++.+.+.+..++
T Consensus 63 ~~~~~~~~~~~g~~~ai~~a~~~~~~~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~ 123 (229)
T cd02540 63 NVEFVLQEEQLGTGHAVKQALPALKDFEGDVLVLYGDVPLITPETLQRLLEAHREAGADVT 123 (229)
T ss_pred CcEEEECCCCCCCHHHHHHHHHhhccCCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEE
Confidence 5666766667788888888887664 68999999998 4688899999998876544443
No 137
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=81.30 E-value=9.2 Score=38.04 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=45.8
Q ss_pred CEEEEEcC-CCcCchhHHhHhhhhcC--CCEEEEEcCCc-ccCccchHHHHHHHHhcCCceeee
Q psy1765 179 RVHLYRTS-KREGLIRARMFGAKYAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTNTVTVP 238 (867)
Q Consensus 179 ~vrii~~~-~n~G~a~ArN~G~~~A~--Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~~vv~p 238 (867)
.+.++..+ ...|...+...|++.+. .|+++++.+|. .+++..++.+++.+..++..++.|
T Consensus 63 ~~~~~~~~~~~~G~~~~i~~al~~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~v~~ 126 (186)
T cd04182 63 PVVVVINPDWEEGMSSSLAAGLEALPADADAVLILLADQPLVTAETLRALIDAFREDGAGIVAP 126 (186)
T ss_pred CeEEEeCCChhhCHHHHHHHHHHhccccCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeEEEE
Confidence 34445443 34688888999998886 79999999999 568999999999887655556555
No 138
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=81.00 E-value=4 Score=41.14 Aligned_cols=36 Identities=19% Similarity=0.024 Sum_probs=28.4
Q ss_pred eEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCC
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSE 159 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~St 159 (867)
+++++.++|.|++.|+|.|+.+|+|+++ +++|+...
T Consensus 57 i~~i~~~~n~G~~~a~N~g~~~a~gd~i--------~~lD~Dd~ 92 (201)
T cd04195 57 LKVVPLEKNRGLGKALNEGLKHCTYDWV--------ARMDTDDI 92 (201)
T ss_pred eEEEEcCccccHHHHHHHHHHhcCCCEE--------EEeCCccc
Confidence 4566677889999999999999999875 46665543
No 139
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=80.88 E-value=33 Score=35.89 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=38.9
Q ss_pred HHHHHHhhcCCCCEEEEEcC--CCcCchhHHhHhhhhcCC--CEEEEEcCCc-ccCccchHHHHHHHHhc
Q psy1765 167 EVESFVKGLNNGRVHLYRTS--KREGLIRARMFGAKYATG--KVLVFLDSHI-EVNTHWLEPLLVPIAER 231 (867)
Q Consensus 167 ~l~~~~~~~~~~~vrii~~~--~n~G~a~ArN~G~~~A~G--d~llfLDaD~-~v~p~wLe~Ll~~l~~~ 231 (867)
.+.+++... .++++..+ ...|.+++. .++..... |.++++++|. .+++..|..+++.+..+
T Consensus 53 ~i~~~~~~~---~~~~~~~~~~~~~gt~~~~-~~~~~~~~~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~ 118 (239)
T cd02517 53 RIADAVESF---GGKVVMTSPDHPSGTDRIA-EVAEKLDADDDIVVNVQGDEPLIPPEMIDQVVAALKDD 118 (239)
T ss_pred HHHHHHHHc---CCEEEEcCcccCchhHHHH-HHHHhcCCCCCEEEEecCCCCCCCHHHHHHHHHHHHhC
Confidence 355555443 35554432 234555433 33444444 8899999999 67899999999988665
No 140
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=80.65 E-value=43 Score=35.17 Aligned_cols=130 Identities=14% Similarity=0.128 Sum_probs=61.9
Q ss_pred CCCEEEEEcCCc-ccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccc-cccccccccccccccCCcCcCCCCC
Q psy1765 203 TGKVLVFLDSHI-EVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSAL-VRGGFNWGLHFKWENLPKGTLNSSE 280 (867)
Q Consensus 203 ~Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~-~~g~f~~~l~~~~~~~~~~~~~~~~ 280 (867)
..+.++++++|. .+++..|+.+++.+...+..++.......+........... ....-+.-..|.....+.. ....
T Consensus 90 ~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~d~~g~v~~~~e~~~~~~--~~~~ 167 (245)
T PRK05450 90 DDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAVPIHDAEEAFNPNVVKVVLDADGRALYFSRAPIPYG--RDAF 167 (245)
T ss_pred CCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeeeecCCHHHhcCcCCCEEEeCCCCcEEEecCCCCCCC--CCcc
Confidence 468899999999 67999999999988765444443322211111000000000 0000000011111111110 0000
Q ss_pred CCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHHHHcCCeEEEE
Q psy1765 281 DFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMI 337 (867)
Q Consensus 281 ~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl~~~G~~i~~~ 337 (867)
.... ..+.....|+..++++.+..+-...+... .-.+..++ .++...|+++..+
T Consensus 168 ~~~~-~~~~~~~~Giy~~~~~~l~~~~~~~~~~~-~~~~~~~~-~~~~~~g~~v~~~ 221 (245)
T PRK05450 168 ADSA-PTPVYRHIGIYAYRRGFLRRFVSLPPSPL-EKIESLEQ-LRALENGYRIHVV 221 (245)
T ss_pred cccc-CccccEEEEEEecCHHHHHHHHhCCCCcc-ccchhHHH-HHHHHCCCceEEE
Confidence 0000 11345667889999999988754433321 10133333 4777889887554
No 141
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=80.47 E-value=6.3 Score=49.52 Aligned_cols=168 Identities=14% Similarity=0.156 Sum_probs=96.2
Q ss_pred CCCCcEEEEEEeCC---CChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchh--hHHHHHh--------------
Q psy1765 49 STLPSTSVIICFYN---EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHG--EVETFVK-------------- 109 (867)
Q Consensus 49 ~~~P~vSVIIp~yN---e~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~--~~~~~~~-------------- 109 (867)
+.+|.|-|.|++-+ |+.-.+..||-||++-+||.-..-+.|-|||.+.-+ +.+ |..+|++
T Consensus 284 ~~LP~vDvFV~TADP~kEPPl~t~NTVLSiLA~DYP~eKlscYvSDDGgS~LT-f~AL~EAa~FAk~WvPFCkK~~IepR 362 (1044)
T PLN02915 284 NRLAPVDVFVSTVDPLKEPPIITANTVLSILAVDYPVDKVSCYVSDDGASMLL-FDTLSETAEFARRWVPFCKKHNIEPR 362 (1044)
T ss_pred ccCCceeeEeccCCcccCcchHHHHHHHHHHhhcccccceeEEEecCCchHhH-HHHHHHHHHHHHhhcchhhhcCCCcC
Confidence 45999999999964 666689999999999999976557889999977542 111 1122222
Q ss_pred ---hcCCCceEEE-------Eeccchhh------HHHhhhhhhh------------hcccccc-------ccceeEEEEE
Q psy1765 110 ---GLNDGRVHLY-------RTSKREGL------IRARMFGAKY------------ATGKNRI-------QSLLHEIILV 154 (867)
Q Consensus 110 ---~~~~~~~~~~-------~~~~~~gi------~~a~~~g~~~------------a~g~~~~-------~~~l~EIIVV 154 (867)
..+.+.+... ...+++-+ ...|+.++.. +.|..=. ++|+ +|+ .
T Consensus 363 aPe~YFs~~~~~~~~~~~~~F~~e~~~mKreYEe~K~RIe~l~~~~~~~~~~~~~m~dgt~W~g~~~~dHp~II-qVl-l 440 (1044)
T PLN02915 363 APEFYFSQKIDYLKDKVQPTFVKERRAMKREYEEFKVRINALVAKAQKKPEEGWVMQDGTPWPGNNTRDHPGMI-QVY-L 440 (1044)
T ss_pred CHHHHhccCCCccccccCchhHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccCCccCCCCCCCCCccce-EEe-e
Confidence 1111111111 11122222 1223333221 1111000 1111 222 2
Q ss_pred eCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcC-----chhHHhHhhhhc----CCCEEEEEcCCccc-CccchHHH
Q psy1765 155 NDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPL 224 (867)
Q Consensus 155 Dn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G-----~a~ArN~G~~~A----~Gd~llfLDaD~~v-~p~wLe~L 224 (867)
|+ +.+ ..+ +. ..+ |.+.++..+++.| .|+|+|+-++.+ .++||+-||.|..+ ++..+...
T Consensus 441 ~~-~~~-~d~----~g--~~l--P~LVYVSREKRP~~~Hh~KAGAMNaLlRVSavmTNaP~iLNlDCDmY~Nns~a~r~A 510 (1044)
T PLN02915 441 GS-EGA-LDV----EG--KEL--PRLVYVSREKRPGYNHHKKAGAMNALVRVSAVLTNAPFMLNLDCDHYINNSKAVREA 510 (1044)
T ss_pred cC-CCC-ccc----cc--Ccc--ceeEEEecccCCCCCcchhhhhhhhHhhhhheeecCcEEEeeccccccCcchhhHhh
Confidence 32 221 000 00 013 7888998888877 578999988877 79999999999998 57777666
Q ss_pred HHHHH
Q psy1765 225 LVPIA 229 (867)
Q Consensus 225 l~~l~ 229 (867)
+=.+.
T Consensus 511 MCf~l 515 (1044)
T PLN02915 511 MCFLM 515 (1044)
T ss_pred ceeee
Confidence 55554
No 142
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=79.76 E-value=7.1 Score=42.80 Aligned_cols=48 Identities=8% Similarity=0.125 Sum_probs=39.6
Q ss_pred EEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcC
Q psy1765 183 YRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT 232 (867)
Q Consensus 183 i~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~ 232 (867)
.+...+.-++-..+.+.. .|+|.+.|-+|+...|+|+..+...+..-.
T Consensus 151 wrsKq~lDya~Lm~y~~~--~~~YyL~LEDDVia~~~f~~~i~~~v~~~~ 198 (297)
T PF04666_consen 151 WRSKQNLDYAFLMNYCQN--LGDYYLQLEDDVIAAPGFLSRIKRFVEAWE 198 (297)
T ss_pred HHHhhcccHHHHHHHHHh--cCCeEEEecCCeEechhHHHHHHHHHHHhc
Confidence 345558888888887654 689999999999999999999999987643
No 143
>PLN02458 transferase, transferring glycosyl groups
Probab=79.63 E-value=11 Score=41.35 Aligned_cols=42 Identities=19% Similarity=0.105 Sum_probs=28.0
Q ss_pred CCcEEEEEEeCCC---ChHHHHHHHHHHHhcCccccccEEEEEECCCC
Q psy1765 51 LPSTSVIICFYNE---HPATLYRSVQTLLSRTGQSLLHEIILVNDFSE 95 (867)
Q Consensus 51 ~P~vSVIIp~yNe---~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~ 95 (867)
.+.|-||.|+|.. ....|-+.-++|. .-++++ -.|||+|++.
T Consensus 111 ~rlIivVTPTY~rR~~Q~a~LTRLahTL~-lVp~pL--~WIVVEd~~~ 155 (346)
T PLN02458 111 RRLVIIVTPISTKDRYQGVLLRRLANTLR-LVPPPL--LWIVVEGQSD 155 (346)
T ss_pred CceEEEECCCCCCcchhHHHHHHHHHHHh-cCCCCc--eEEEEeCCCC
Confidence 4569999999972 2235556555554 445566 7899998763
No 144
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=78.77 E-value=64 Score=35.31 Aligned_cols=55 Identities=16% Similarity=0.241 Sum_probs=38.7
Q ss_pred CCEEEEEcCCCcCchhHHhHhhhhcCC-CEEEEEcCCcccCccchHHHHHHHHhcCC
Q psy1765 178 GRVHLYRTSKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 178 ~~vrii~~~~n~G~a~ArN~G~~~A~G-d~llfLDaD~~v~p~wLe~Ll~~l~~~~~ 233 (867)
.++.++.+++..|.+.|.-.|.....+ ++++++ +|..+...-+..+++.+.+...
T Consensus 76 ~~i~y~~q~~~~Gta~Al~~a~~~i~~~~~~lv~-gD~i~~~~~l~~ll~~~~~~~~ 131 (292)
T PRK15480 76 LNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVL-GDNIFYGHDLPKLMEAAVNKES 131 (292)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhCCCCEEEEE-CCeeeeccCHHHHHHHHHhCCC
Confidence 367788888889999999888877644 566655 6655544457888887755443
No 145
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=77.04 E-value=11 Score=37.62 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=45.5
Q ss_pred CEEEEEcCC-CcCchhHHhHhhh-hcCCCEEEEEcCCcc-cCccchHHHHHHHHhcCCceeee
Q psy1765 179 RVHLYRTSK-REGLIRARMFGAK-YATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP 238 (867)
Q Consensus 179 ~vrii~~~~-n~G~a~ArN~G~~-~A~Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~~~vv~p 238 (867)
.+.++..+. ..|...+.-.|++ ....+.++++++|.- +++..++.+++.+..++..+++|
T Consensus 63 ~v~~v~~~~~~~g~~~si~~~l~~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~ 125 (188)
T TIGR03310 63 NITLVHNPQYAEGQSSSIKLGLELPVQSDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVVP 125 (188)
T ss_pred CeEEEECcChhcCHHHHHHHHhcCCCCCCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEEe
Confidence 577776542 3577788888887 456799999999985 68999999999887666555554
No 146
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=76.77 E-value=27 Score=35.26 Aligned_cols=60 Identities=18% Similarity=0.212 Sum_probs=43.5
Q ss_pred CEEEEEcCC-CcCchhHHhHhhhhc---CCCEEEEEcCCccc-CccchHHHHHHHHhcCCceeee
Q psy1765 179 RVHLYRTSK-REGLIRARMFGAKYA---TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVP 238 (867)
Q Consensus 179 ~vrii~~~~-n~G~a~ArN~G~~~A---~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~~~vv~p 238 (867)
.+.++.++. ..|...+.-.|++++ ..|+++++++|.-+ +++.++.|++.+...+..++++
T Consensus 67 ~~~~~~~~~~~~G~~~si~~gl~~~~~~~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~~~~~ 131 (190)
T TIGR03202 67 RIMLVCCRDACEGQAHSLKCGLRKAEAMGADAVVILLADQPFLTADVINALLALAKRRPDDYVAA 131 (190)
T ss_pred CeEEEECCChhhhHHHHHHHHHHHhccCCCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCCEEEE
Confidence 455554332 347778888888875 47999999999964 8999999999887655544443
No 147
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=76.57 E-value=4.7 Score=43.53 Aligned_cols=50 Identities=12% Similarity=0.148 Sum_probs=34.7
Q ss_pred ceEEEEeccchhhHHHhhhhhhhh---ccccccccceeEEEEEeCCCCCCcCchHHHHHHH
Q psy1765 115 RVHLYRTSKREGLIRARMFGAKYA---TGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFV 172 (867)
Q Consensus 115 ~~~~~~~~~~~gi~~a~~~g~~~a---~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~ 172 (867)
+|+++..++|.|++.|.|.|++.| .+|++ +.+|+.+..+....+.+.+.+
T Consensus 46 ~i~~i~~~~N~G~a~a~N~Gi~~a~~~~~d~i--------~~lD~D~~~~~~~l~~l~~~~ 98 (281)
T TIGR01556 46 KIALIHLGDNQGIAGAQNQGLDASFRRGVQGV--------LLLDQDSRPGNAFLAAQWKLL 98 (281)
T ss_pred CeEEEECCCCcchHHHHHHHHHHHHHCCCCEE--------EEECCCCCCCHHHHHHHHHHH
Confidence 467778889999999999999998 44543 477888775433333333333
No 148
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=74.87 E-value=61 Score=33.86 Aligned_cols=76 Identities=13% Similarity=0.219 Sum_probs=44.5
Q ss_pred eeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCc-ccCccchHHHHH
Q psy1765 148 LHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI-EVNTHWLEPLLV 226 (867)
Q Consensus 148 l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~-~v~p~wLe~Ll~ 226 (867)
+.+|||+=|. +.+.++++.. ...+.+.......|.++.. .++.....|.++++++|. .+.+..+..+++
T Consensus 43 ~~~ivv~t~~--------~~i~~~~~~~-~~~v~~~~~~~~~g~~~~~-~a~~~~~~d~~lv~~~D~P~i~~~~i~~l~~ 112 (238)
T PRK13368 43 VEEVYVATDD--------QRIEDAVEAF-GGKVVMTSDDHLSGTDRLA-EVMLKIEADIYINVQGDEPMIRPRDIDTLIQ 112 (238)
T ss_pred CCeEEEECCh--------HHHHHHHHHc-CCeEEecCccCCCccHHHH-HHHHhCCCCEEEEEcCCcCcCCHHHHHHHHH
Confidence 4567765321 2345555443 1233222223334544333 344444568999999998 568999999999
Q ss_pred HHHhcCC
Q psy1765 227 PIAERTN 233 (867)
Q Consensus 227 ~l~~~~~ 233 (867)
.+.+.+.
T Consensus 113 ~~~~~~~ 119 (238)
T PRK13368 113 PMLDDPS 119 (238)
T ss_pred HHHHCCC
Confidence 8865543
No 149
>KOG2977|consensus
Probab=74.58 E-value=1.3 Score=47.33 Aligned_cols=43 Identities=21% Similarity=-0.043 Sum_probs=25.2
Q ss_pred EEEEEEeCCCChHHHHHHHH-HHHhcC-ccccccEEEEEECCCCCC
Q psy1765 54 TSVIICFYNEHPATLYRSVQ-TLLSRT-GQSLLHEIILVNDFSEYP 97 (867)
Q Consensus 54 vSVIIp~yNe~~~~l~~~l~-Svl~qt-~~~~~~EiIlVDd~S~d~ 97 (867)
+|+++|..+ ....|...+. +.+.++ .++...||.+-|++|.+.
T Consensus 10 ~~~~l~a~v-~~~~l~~~l~~~~~~r~~~e~~e~ei~~~d~g~~k~ 54 (323)
T KOG2977|consen 10 FSTILVAKV-LLKFLSVYLFESHLPRPALENEETEITLDDPGSIKS 54 (323)
T ss_pred HHHHHHHHH-HHHHHHHHHhhccCCCccccccceEEEEcCCCCccc
Confidence 344555555 3335555555 555554 344555788888899886
No 150
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=74.47 E-value=6.7 Score=37.49 Aligned_cols=52 Identities=19% Similarity=0.244 Sum_probs=34.8
Q ss_pred ceEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhh
Q psy1765 115 RVHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKG 174 (867)
Q Consensus 115 ~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~ 174 (867)
+++++..++|.|.+.++|.|+.+|.|+++ +++|+.........+.+.+++.+
T Consensus 54 ~i~~i~~~~n~g~~~~~n~~~~~a~~~~i--------~~ld~D~~~~~~~l~~l~~~~~~ 105 (169)
T PF00535_consen 54 NIRYIRNPENLGFSAARNRGIKHAKGEYI--------LFLDDDDIISPDWLEELVEALEK 105 (169)
T ss_dssp TEEEEEHCCCSHHHHHHHHHHHH--SSEE--------EEEETTEEE-TTHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccceeEE--------EEeCCCceEcHHHHHHHHHHHHh
Confidence 57788888999999999999999999955 36666654322334445555544
No 151
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=73.61 E-value=39 Score=34.46 Aligned_cols=54 Identities=11% Similarity=0.109 Sum_probs=40.4
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~ 233 (867)
.+.++..++..|.+.+.-.++.....+.++++++|.....+ +..+++.+.+...
T Consensus 71 ~i~~~~~~~~~g~~~al~~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~ 124 (217)
T cd04181 71 NIEYVVQEEPLGTAGAVRNAEDFLGDDDFLVVNGDVLTDLD-LSELLRFHREKGA 124 (217)
T ss_pred eEEEEeCCCCCccHHHHHHhhhhcCCCCEEEEECCeecCcC-HHHHHHHHHhcCC
Confidence 56666666668888999888887777899999999988776 5555665554443
No 152
>cd00218 GlcAT-I Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis. Beta1,3-glucuronyltransferase I (GlcAT-I) domain; GlcAT-I is a Key enzyme involved in the initial steps of proteoglycan synthesis. GlcAT-I catalyzes the transfer of a glucuronic acid moiety from the uridine diphosphate-glucuronic acid (UDP-GlcUA) to the common linkage region of trisaccharide Gal-beta-(1-3)-Gal-beta-(1-4)-Xyl of proteoglycans. The enzyme has two subdomains that bind the donor and acceptor substrate separately. The active site is located at the cleft between both subdomains in which the trisaccharide molecule is oriented perpendicular to the UDP. This family has been classified as Glycosyltransferase family 43 (GT-43).
Probab=73.36 E-value=25 Score=36.80 Aligned_cols=41 Identities=32% Similarity=0.293 Sum_probs=28.2
Q ss_pred CcEEEEEEeCCCCh--HHHHHHHHHHHhcCccccccEEEEEECCCCC
Q psy1765 52 PSTSVIICFYNEHP--ATLYRSVQTLLSRTGQSLLHEIILVNDFSEY 96 (867)
Q Consensus 52 P~vSVIIp~yNe~~--~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d 96 (867)
|.|-||.|+|.... ..|-+..++|..= + ++ --|||+|+...
T Consensus 1 p~i~vVTPTy~R~~Q~~~LtRLa~TL~lV-p-~l--~WIVVEd~~~~ 43 (223)
T cd00218 1 PTIYVVTPTYARPVQKAELTRLAHTLRLV-P-PL--HWIVVEDSEEK 43 (223)
T ss_pred CeEEEECCCCccchhhHHHHHHHHHHhcC-C-ce--EEEEEeCCCCC
Confidence 57889999997542 3566666665533 3 66 78999999843
No 153
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=72.98 E-value=4.9 Score=42.03 Aligned_cols=73 Identities=19% Similarity=0.228 Sum_probs=54.9
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCC--CcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHH
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSK--REGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLV 226 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~--n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~ 226 (867)
.|++||=+|=. .+.++++++++. -..+++.++. ..+-....-.|..+..++ ++.+|+|...+|..++.+++
T Consensus 47 ~e~vvV~~g~~-----~~lve~~l~~~~-~~~~iv~N~~y~ktN~~~Sl~~akd~~~~~-fii~~sD~vye~~~~e~l~~ 119 (239)
T COG1213 47 TEFVVVTNGYR-----ADLVEEFLKKYP-FNAKIVINSDYEKTNTGYSLLLAKDYMDGR-FILVMSDHVYEPSILERLLE 119 (239)
T ss_pred ceEEEEeccch-----HHHHHHHHhcCC-cceEEEeCCCcccCCceeEEeeehhhhcCc-EEEEeCCEeecHHHHHHHHh
Confidence 48888887744 567888888872 2788888872 222234566777888888 78899999999999999988
Q ss_pred HH
Q psy1765 227 PI 228 (867)
Q Consensus 227 ~l 228 (867)
+-
T Consensus 120 a~ 121 (239)
T COG1213 120 AP 121 (239)
T ss_pred Cc
Confidence 54
No 154
>PF06306 CgtA: Beta-1,4-N-acetylgalactosaminyltransferase (CgtA); InterPro: IPR010446 This family consists of several beta-1,4-N-acetylgalactosaminyltransferase proteins from Campylobacter jejuni [].
Probab=72.58 E-value=14 Score=40.36 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=32.7
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCC
Q psy1765 54 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPS 98 (867)
Q Consensus 54 vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s 98 (867)
+|-.|=+-||+. +|.++|+|+|.- +.|+||.=|.|+|+|
T Consensus 89 ~~~~iRvKnE~~-tl~~si~S~Lpa-----i~~gVI~yNdc~D~t 127 (347)
T PF06306_consen 89 PWAFIRVKNEAM-TLAESIESILPA-----IDEGVIGYNDCTDGT 127 (347)
T ss_pred cceEEEEcchhh-hHHHHHHHHHHH-----HhccEEEeecCCCCH
Confidence 788999999887 999999999954 338888888888884
No 155
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=71.49 E-value=1.2e+02 Score=34.08 Aligned_cols=61 Identities=20% Similarity=0.190 Sum_probs=41.9
Q ss_pred CcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEE
Q psy1765 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYR 120 (867)
Q Consensus 52 P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~ 120 (867)
+.+-|||-+||.. .+|+..|+||.+...-+ |.+||= |-|- ..+++...++.+..+|+.-++
T Consensus 31 ~~~vivvqVH~r~-~yl~~li~sL~~~~~I~---~~llif--SHd~--~~~ein~~v~~I~Fc~v~QIf 91 (356)
T PF05060_consen 31 DSIVIVVQVHNRP-EYLKLLIDSLSQARGIE---EALLIF--SHDF--YSEEINDLVQSIDFCRVMQIF 91 (356)
T ss_pred CCEEEEEEECCcH-HHHHHHHHHHHHhhCcc---ceEEEE--eccC--ChHHHHHHHHhCCcceeEEEe
Confidence 4577788889955 59999999998765433 444442 3332 345788889989888875443
No 156
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=71.48 E-value=60 Score=34.46 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=37.9
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhc---CCCEEEEEcCCcccCccchHHHHHHHHhcCCc
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYA---TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNT 234 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A---~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~ 234 (867)
.+.++..++..|.+.|.-.+...- ..+.++++++|...+.+ +..+++.+.+....
T Consensus 75 ~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~~~lv~~gD~~~~~d-l~~~~~~h~~~~~~ 132 (257)
T cd06428 75 PIRYLQEYKPLGTAGGLYHFRDQILAGNPSAFFVLNADVCCDFP-LQELLEFHKKHGAS 132 (257)
T ss_pred eEEEecCCccCCcHHHHHHHHHHhhccCCCCEEEEcCCeecCCC-HHHHHHHHHHcCCC
Confidence 455555566788888776665443 24678889999987655 88888887665543
No 157
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=71.14 E-value=97 Score=32.36 Aligned_cols=53 Identities=4% Similarity=-0.038 Sum_probs=37.5
Q ss_pred CcCchhHHhHhhhhc----CCCEEEEEcCCccc-CccchHHHHHHHHhcCCceeeeEE
Q psy1765 188 REGLIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPII 240 (867)
Q Consensus 188 n~G~a~ArN~G~~~A----~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~~~vv~p~i 240 (867)
..|...+.-.|++.. ..|+++++++|.-+ .+..|+.+++.+.++....+.++.
T Consensus 75 ~~~~~~si~~~l~~l~~~~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~ 132 (222)
T TIGR03584 75 FTGTAPVVKHAIEELKLQKQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVT 132 (222)
T ss_pred CCCchHHHHHHHHHHhhcCCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEee
Confidence 345555666665543 36999999999976 899999999999875444444433
No 158
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=70.02 E-value=24 Score=37.04 Aligned_cols=68 Identities=12% Similarity=0.119 Sum_probs=52.4
Q ss_pred hHHHHHHHhhcCC--CCEEEEEcCCCcCchhHHhHhhhhcCCCE----EEEEcCCcccCccchHHHHHHHHhcCC
Q psy1765 165 HGEVESFVKGLNN--GRVHLYRTSKREGLIRARMFGAKYATGKV----LVFLDSHIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 165 ~~~l~~~~~~~~~--~~vrii~~~~n~G~a~ArN~G~~~A~Gd~----llfLDaD~~v~p~wLe~Ll~~l~~~~~ 233 (867)
.+.+.+++..... ..+.++..++..|.+.|.-.+......+. ++++.+|...+. -+..+++.+.+...
T Consensus 58 ~~~i~~~~~~~~~~~~~i~~i~~~~~~Gta~al~~a~~~i~~~~~~~~~lv~~gD~i~~~-~~~~~l~~~~~~~~ 131 (248)
T PF00483_consen 58 EEQIEEHLGSGYKFGVKIEYIVQPEPLGTAGALLQALDFIEEEDDDEDFLVLNGDIIFDD-DLQDMLEFHRESNA 131 (248)
T ss_dssp HHHHHHHHTTSGGGTEEEEEEEESSSSCHHHHHHHTHHHHTTSEE-SEEEEETTEEEEST-THHHHHHHHHHHSS
T ss_pred cccccccccccccccccceeeecccccchhHHHHHHHHHhhhccccceEEEEeccccccc-hhhhHHHhhhcccc
Confidence 3567777766521 24888888888999999999998887765 999999998877 66777777776655
No 159
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=69.41 E-value=69 Score=33.28 Aligned_cols=67 Identities=13% Similarity=0.138 Sum_probs=41.9
Q ss_pred HHHHHHHhhcC--CCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCC
Q psy1765 166 GEVESFVKGLN--NGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 166 ~~l~~~~~~~~--~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~ 233 (867)
+.+.+++.... +..+.++..+...|.+.+.-.|......+-++++++|..+..+. ..+++.+.+...
T Consensus 58 ~~~~~~~~~~~~~~~~i~~~~~~~~~g~~~sl~~a~~~i~~~~~li~~~D~~~~~~~-~~~~~~~~~~~~ 126 (236)
T cd04189 58 EEIKEALGDGSRFGVRITYILQEEPLGLAHAVLAARDFLGDEPFVVYLGDNLIQEGI-SPLVRDFLEEDA 126 (236)
T ss_pred HHHHHHhcchhhcCCeEEEEECCCCCChHHHHHHHHHhcCCCCEEEEECCeecCcCH-HHHHHHHHhcCC
Confidence 44566665421 12466676766778888888888776533345578898887764 456666554433
No 160
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=68.90 E-value=20 Score=36.35 Aligned_cols=57 Identities=12% Similarity=0.102 Sum_probs=43.1
Q ss_pred CEEEEEcCC--CcCchhHHhHhhhhcCCCEEEEEcCCc-ccCccchHHHHHHHHhcCCce
Q psy1765 179 RVHLYRTSK--REGLIRARMFGAKYATGKVLVFLDSHI-EVNTHWLEPLLVPIAERTNTV 235 (867)
Q Consensus 179 ~vrii~~~~--n~G~a~ArN~G~~~A~Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~~v 235 (867)
.++++.... ..|...+.-.|++....++++++++|. .++++.++.+++.+.+++..+
T Consensus 62 ~~~~v~~~~~~~~g~~~~i~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 121 (193)
T PRK00317 62 GLPVIPDSLADFPGPLAGILAGLKQARTEWVLVVPCDTPFIPPDLVARLAQAAGKDDADV 121 (193)
T ss_pred CCcEEeCCCCCCCCCHHHHHHHHHhcCCCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcE
Confidence 345555432 367788888888888889999999999 459999999999876544433
No 161
>PLN02899 alpha-galactosidase
Probab=68.56 E-value=5.2 Score=47.45 Aligned_cols=65 Identities=18% Similarity=0.308 Sum_probs=47.8
Q ss_pred cCceeeeCCC---------CcEEEecCCCCCCCeEEEecCCeeeeecCCCCceeecCCCCC---CCeEEEEecCCCCCce
Q psy1765 727 ELLCLDAGAT---------KPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLE---NTVIVMEMCAQHKDTS 794 (867)
Q Consensus 727 s~~CLD~~g~---------~v~~~~C~~~~~~Q~W~~~~~~~~~i~n~~sg~CLd~~~~~~---g~~v~~~~C~~~~~Q~ 794 (867)
..+|||+.+. .-...+|.-. ++|.|.+..+|. |.|..||+|-.|..... ...+..|.-.|+..+.
T Consensus 486 ~~~c~~~~~~~~~~~~~~~~~~fs~c~~~-~~q~w~l~~~g~--l~~~~sglca~v~~~~~~~~~~~~r~w~a~g~~g~~ 562 (633)
T PLN02899 486 GELCLDASPKQKRTSKDFRSGSFSPCRWD-ANQMWELNNNGT--LISSYSGLCATVNSVVAEVATGGVRSWIATGRKGEI 562 (633)
T ss_pred cChhhccCCCCCcCHhHhhccccCCCCCC-hhhceeeCCCCC--EecCccccceEeeccccccccCceeEEEEcCCCccE
Confidence 3799998744 2236789764 599999998887 89999999999863222 2346778888877754
No 162
>PLN02248 cellulose synthase-like protein
Probab=68.45 E-value=7.5 Score=49.09 Aligned_cols=53 Identities=15% Similarity=0.115 Sum_probs=43.8
Q ss_pred CCEEEEEcCCCcC-----chhHHhHhhh----hcCCCEEEEEcCCccc-CccchHHHHHHHHh
Q psy1765 178 GRVHLYRTSKREG-----LIRARMFGAK----YATGKVLVFLDSHIEV-NTHWLEPLLVPIAE 230 (867)
Q Consensus 178 ~~vrii~~~~n~G-----~a~ArN~G~~----~A~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~ 230 (867)
|.+.+|..+++.| .++|+|+-++ ...|+||+.||+|..+ ++..|...+-.|..
T Consensus 585 P~LVYVSREKRPg~~Hh~KAGAMNALlRVSavmTNgPfILNLDCDmYiNns~alr~AMCf~lD 647 (1135)
T PLN02248 585 PMLVYVSREKRPGYDHNKKAGAMNALVRASAIMSNGPFILNLDCDHYIYNSLAIREGMCFMMD 647 (1135)
T ss_pred ceeEEEecccCCCCCcccccchhhhHHHhhhhccCCCeEEEeccCcccCCchhHHhcchheec
Confidence 7788888887776 6889999887 4489999999999998 56688888887764
No 163
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=68.44 E-value=20 Score=35.84 Aligned_cols=57 Identities=7% Similarity=0.127 Sum_probs=44.3
Q ss_pred CEEEEEc--CCCcCchhHHhHhhhhcCCCEEEEEcCCc-ccCccchHHHHHHHHhcCCce
Q psy1765 179 RVHLYRT--SKREGLIRARMFGAKYATGKVLVFLDSHI-EVNTHWLEPLLVPIAERTNTV 235 (867)
Q Consensus 179 ~vrii~~--~~n~G~a~ArN~G~~~A~Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~~v 235 (867)
.+.++.. +...|...+.-.|+..+..++++++++|. .++++.++.+++.+.+.+..+
T Consensus 61 ~~~~i~~~~~~~~g~~~si~~al~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 61 GLPVVPDALADFPGPLAGILAGLRWAGTDWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred CCcEEecCCCCCCCCHHHHHHHHHhcCCCeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 3555554 33578888888899888889999999998 569999999999886544333
No 164
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=68.08 E-value=7.9 Score=38.95 Aligned_cols=37 Identities=19% Similarity=0.195 Sum_probs=28.5
Q ss_pred eEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCC
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEY 160 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std 160 (867)
++++..++|.|++.|+|.|++.|.|++++ ++|+.+..
T Consensus 60 ~~~~~~~~~~g~~~a~n~g~~~a~~d~i~--------~ld~D~~~ 96 (202)
T cd04184 60 IKVVFREENGGISAATNSALELATGEFVA--------LLDHDDEL 96 (202)
T ss_pred EEEEEcccCCCHHHHHHHHHHhhcCCEEE--------EECCCCcC
Confidence 44556677889999999999999998663 66766653
No 165
>PLN03153 hypothetical protein; Provisional
Probab=67.76 E-value=15 Score=42.97 Aligned_cols=49 Identities=27% Similarity=0.354 Sum_probs=32.9
Q ss_pred ccccceEeEeHHHHHHhCCC-CCCCC----CCcccchHHHHHHHHcCCeEEEEcc
Q psy1765 290 TMAGGLFAIDRQYFDSLGQY-DAGLE----IWGGENLELSFRIWMCGGSLAMIPC 339 (867)
Q Consensus 290 ~~~G~~~airR~~f~~vGgf-De~~~----~~G~ED~Dls~Rl~~~G~~i~~~P~ 339 (867)
+..|+-+++++.+.+++-.+ |+-.. .| ++|..|..-+.+.|..+...|.
T Consensus 261 A~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~-~gD~rL~~CL~elGV~LT~~~g 314 (537)
T PLN03153 261 AFGGGGIAISYPLAEALSRILDDCLDRYPKLY-GSDDRLHACITELGVPLSREPG 314 (537)
T ss_pred ccCCceEEEcHHHHHHHHHHhhhhhhhcccCC-CcHHHHHHHHHHcCCCceecCC
Confidence 34577789999766665433 22211 24 6888899989999887766664
No 166
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=67.27 E-value=85 Score=31.86 Aligned_cols=47 Identities=13% Similarity=-0.007 Sum_probs=34.2
Q ss_pred CCCcCchhHHhHhhhhcC---CCEEEEEcCCcccCccchHHHHHHHHhcCC
Q psy1765 186 SKREGLIRARMFGAKYAT---GKVLVFLDSHIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 186 ~~n~G~a~ArN~G~~~A~---Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~ 233 (867)
+...|.+.|.-.|..... .+.++++.+|.. .+.-+..+++.+.+...
T Consensus 90 ~~~~Gta~al~~a~~~i~~~~~~~~lv~~gD~v-~~~~~~~~l~~~~~~~~ 139 (200)
T cd02508 90 DWYRGTADAIYQNLDYIERSDPEYVLILSGDHI-YNMDYREMLDFHIESGA 139 (200)
T ss_pred CcccCcHHHHHHHHHHHHhCCCCEEEEecCCEE-EecCHHHHHHHHHHcCC
Confidence 346788998888877653 578889999985 44568888887765543
No 167
>KOG1994|consensus
Probab=66.79 E-value=2.9 Score=42.80 Aligned_cols=33 Identities=42% Similarity=0.740 Sum_probs=27.4
Q ss_pred cchHHHHHHhcCCCCCccCCCCCCCCcccccccccc
Q psy1765 821 ENKGFRMLSKMGWKAGQTLGKDEANSAALIEPELGL 856 (867)
Q Consensus 821 ~~~g~~~~~~~g~~~g~~lg~~~~~~~~~~~p~~~~ 856 (867)
.-++.+||.-|||++|..||+.. +.+-||+..+
T Consensus 38 ~r~e~k~~~n~~~~e~r~l~~~e---~~~ee~~~~l 70 (268)
T KOG1994|consen 38 MRREYKMMENMGYKEGRTLGSNE---SALEEPIKVL 70 (268)
T ss_pred hhhHHHHHHhcCCCCCCccchhh---hhhcchHHHh
Confidence 45788999999999999999987 6677776654
No 168
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=66.02 E-value=52 Score=34.36 Aligned_cols=57 Identities=14% Similarity=0.170 Sum_probs=38.5
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCccc-CccchHHHHHHHHhcCCcee
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVT 236 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~~~vv 236 (867)
.+.++..+...+++ ....+++....++++++++|.-+ ++..++.+++.+...+..++
T Consensus 64 ~v~~v~~~~~~~l~-~~~~~~~~~~~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~ 121 (233)
T cd02518 64 GVKVFRGSEEDVLG-RYYQAAEEYNADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYT 121 (233)
T ss_pred CCeEEECCchhHHH-HHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEE
Confidence 46667666433322 22334444567999999999964 89999999998876544443
No 169
>KOG1413|consensus
Probab=65.92 E-value=46 Score=36.88 Aligned_cols=180 Identities=12% Similarity=0.096 Sum_probs=97.5
Q ss_pred CCCCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhH
Q psy1765 49 STLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLI 128 (867)
Q Consensus 49 ~~~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~ 128 (867)
.-+|.+-||+-.-|.+ +.+++|++.|+...+.....-|||--||+..+ ++..+..|.+ .+.+++..
T Consensus 64 ~~~~v~pvvVf~csR~-~~lr~~v~kll~yrPsaekfpiiVSQD~~~e~--vk~~~~~~g~-----~v~~i~~~------ 129 (411)
T KOG1413|consen 64 NWPPVIPVVVFACSRA-DALRRHVKKLLEYRPSAEKFPIIVSQDCEKEA--VKKKLLSYGS-----DVSHIQHP------ 129 (411)
T ss_pred CCCCceeEEEEecCcH-HHHHHHHHHHHHhCcchhhcCEEEeccCCcHH--HHHHHHHhcc-----chhhhcCc------
Confidence 3456677777777855 49999999999988655444577777777655 2333333222 11111110
Q ss_pred HHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEE
Q psy1765 129 RARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLV 208 (867)
Q Consensus 129 ~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~ll 208 (867)
.....||-|--+-+.+ ..|.+- +.-+--|.|..+..-+.+.++
T Consensus 130 ----------------~h~~~ei~v~~~~~k~--------~~Yy~I-------------arHYkwAL~q~F~~~~~s~vi 172 (411)
T KOG1413|consen 130 ----------------MHLKDEISVPPRHKKF--------NAYYKI-------------ARHYKWALNQLFIVFRESRVI 172 (411)
T ss_pred ----------------cccccccccCCccccc--------chhHHH-------------HHHHHHHHhhHHhhcCCceeE
Confidence 0112233322222221 111000 112345677777777889999
Q ss_pred EEcCCcccCccchHHHHHHH---HhcCCc-eeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCC
Q psy1765 209 FLDSHIEVNTHWLEPLLVPI---AERTNT-VTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIK 284 (867)
Q Consensus 209 fLDaD~~v~p~wLe~Ll~~l---~~~~~~-vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~ 284 (867)
.+-+|..+.|++.+-..... ..++.. +|+...+ ...........+..
T Consensus 173 i~eDDl~iapDFF~YF~~t~~llk~D~siwcvsaWND-----------------------------NGk~~~Id~~~~~~ 223 (411)
T KOG1413|consen 173 ITEDDLNIAPDFFSYFRNTIILLKGDPSIWCVSAWND-----------------------------NGKKQTIDSTRPSL 223 (411)
T ss_pred EecchhhhhhHHHHHHHHHHHHHhcCCceEEeeeecc-----------------------------CCCcccccccccch
Confidence 99999999999887665543 233321 2222111 11111111111223
Q ss_pred cccccccccceEeEeHHHHHHhCC
Q psy1765 285 PILSPTMAGGLFAIDRQYFDSLGQ 308 (867)
Q Consensus 285 p~~~~~~~G~~~airR~~f~~vGg 308 (867)
.+++..+.|-..|+.++.++++-.
T Consensus 224 lYRtDFFpGLGWml~~~~W~ELsp 247 (411)
T KOG1413|consen 224 LYRTDFFPGLGWMLTKKLWEELSP 247 (411)
T ss_pred hhhccccccchHHHHHHHHHhhCC
Confidence 345667777778999999999853
No 170
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=64.34 E-value=1.5e+02 Score=31.04 Aligned_cols=78 Identities=15% Similarity=0.208 Sum_probs=47.4
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcC--CCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHH
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLN--NGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLV 226 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~--~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~ 226 (867)
.+|+||-+... .+.+.+++.... .-.+.+...++..|.+.|.-.+......+-++++.+|..+.+.-+..+++
T Consensus 47 ~~i~vv~~~~~-----~~~~~~~l~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~lv~~gD~~~~~~~~~~~~~ 121 (240)
T cd02538 47 REILIISTPED-----LPLFKELLGDGSDLGIRITYAVQPKPGGLAQAFIIGEEFIGDDPVCLILGDNIFYGQGLSPILQ 121 (240)
T ss_pred CEEEEEeCcch-----HHHHHHHHhcccccCceEEEeeCCCCCCHHHHHHHHHHhcCCCCEEEEECCEEEccHHHHHHHH
Confidence 46666543211 234555554321 12455566666789999988888776656566678887665555777777
Q ss_pred HHHhc
Q psy1765 227 PIAER 231 (867)
Q Consensus 227 ~l~~~ 231 (867)
...+.
T Consensus 122 ~~~~~ 126 (240)
T cd02538 122 RAAAQ 126 (240)
T ss_pred HHHhc
Confidence 66543
No 171
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=63.48 E-value=27 Score=35.79 Aligned_cols=87 Identities=17% Similarity=0.230 Sum_probs=63.9
Q ss_pred ccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcC-CCcCchhHHhHhhhhcCCC--EEEEEcCCcc-cCccc
Q psy1765 145 QSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTS-KREGLIRARMFGAKYATGK--VLVFLDSHIE-VNTHW 220 (867)
Q Consensus 145 ~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~-~n~G~a~ArN~G~~~A~Gd--~llfLDaD~~-v~p~w 220 (867)
++-+.+||||--.-. .+....... ...++++.++ -..|++...-.|++++.++ .++++-+|.- +.++-
T Consensus 43 ~a~~~~vivV~g~~~-----~~~~~a~~~---~~~~~~v~npd~~~Gls~Sl~ag~~a~~~~~~~v~~~lgDmP~V~~~t 114 (199)
T COG2068 43 SAGLDRVIVVTGHRV-----AEAVEALLA---QLGVTVVVNPDYAQGLSTSLKAGLRAADAEGDGVVLMLGDMPQVTPAT 114 (199)
T ss_pred hcCCCeEEEEeCcch-----hhHHHhhhc---cCCeEEEeCcchhhhHhHHHHHHHHhcccCCCeEEEEeCCCCCCCHHH
Confidence 456679999975421 222333332 2478888886 4689999999999999766 9999999987 79999
Q ss_pred hHHHHHHHHhcCCceeeeEE
Q psy1765 221 LEPLLVPIAERTNTVTVPII 240 (867)
Q Consensus 221 Le~Ll~~l~~~~~~vv~p~i 240 (867)
+.+++..+.... .++.|..
T Consensus 115 ~~rl~~~~~~~~-~~v~p~~ 133 (199)
T COG2068 115 VRRLIAAFRARG-AAVRPVY 133 (199)
T ss_pred HHHHHHhccccC-ceeeeec
Confidence 999999998773 4555543
No 172
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=63.00 E-value=1.7e+02 Score=34.29 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=40.8
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcC---CCEEEEEcCCc-ccCccchHHHHHHHHhcCCc
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYAT---GKVLVFLDSHI-EVNTHWLEPLLVPIAERTNT 234 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~---Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~~ 234 (867)
.+.++..+...|.+.+.-.|+.... .+.++++++|. .+.+.-|+.|++.+.+....
T Consensus 71 ~~~~~~~~~~~Gt~~si~~al~~l~~~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~ 130 (482)
T PRK14352 71 EVDIAVQDEQPGTGHAVQCALEALPADFDGTVVVTAGDVPLLDGETLADLVATHTAEGNA 130 (482)
T ss_pred ccEEEeCCCCCCcHHHHHHHHHHhccCCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCe
Confidence 3555555666788887777777653 36789999998 56888999999987665543
No 173
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=62.92 E-value=1.7e+02 Score=31.83 Aligned_cols=53 Identities=21% Similarity=0.221 Sum_probs=37.2
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcCC-CEEEEEcCCcccCccchHHHHHHHHhcC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAERT 232 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~G-d~llfLDaD~~v~p~wLe~Ll~~l~~~~ 232 (867)
++.++..++..|.+.|.-.|...-.. +++++ .+|..+...-+..+++...+..
T Consensus 73 ~i~~~~q~~~~Gta~al~~a~~~l~~~~~~li-~gD~i~~~~~l~~ll~~~~~~~ 126 (286)
T TIGR01207 73 NLSYAVQPSPDGLAQAFIIGEDFIGGDPSALV-LGDNIFYGHDLSDLLKRAAARE 126 (286)
T ss_pred eEEEEEccCCCCHHHHHHHHHHHhCCCCEEEE-ECCEeccccCHHHHHHHHHhcC
Confidence 56677777789999999888877654 45555 4776665556778887665443
No 174
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=62.47 E-value=2.4e+02 Score=30.98 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=38.1
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcCC-CEEEEEcCCcccCc-------cchHHHHHHHHhcC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYATG-KVLVFLDSHIEVNT-------HWLEPLLVPIAERT 232 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~G-d~llfLDaD~~v~p-------~wLe~Ll~~l~~~~ 232 (867)
++.++.+++..|.++|.-.+...-.. +++++ .+|+.+++ --+..+++.+.+..
T Consensus 98 ~i~~~~q~~~lGtg~Av~~a~~~l~~~~flvv-~gD~l~~~~~~~~~~~~l~~li~~~~~~~ 158 (297)
T TIGR01105 98 TIMNVRQAQPLGLGHSILCARPVVGDNPFVVV-LPDIIIDDATADPLRYNLAAMIARFNETG 158 (297)
T ss_pred eEEEeeCCCcCchHHHHHHHHHHhCCCCEEEE-ECCeeccccccccchhHHHHHHHHHHHhC
Confidence 57788888899999999888877643 45544 58877654 26778888765443
No 175
>PRK10073 putative glycosyl transferase; Provisional
Probab=61.36 E-value=11 Score=42.00 Aligned_cols=29 Identities=34% Similarity=0.358 Sum_probs=23.6
Q ss_pred ceEEEEeccchhhHHHhhhhhhhhcccccc
Q psy1765 115 RVHLYRTSKREGLIRARMFGAKYATGKNRI 144 (867)
Q Consensus 115 ~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~ 144 (867)
+|+++. ++|.|++.|+|.|++.|+|++++
T Consensus 62 ~i~vi~-~~n~G~~~arN~gl~~a~g~yi~ 90 (328)
T PRK10073 62 HVRLLH-QANAGVSVARNTGLAVATGKYVA 90 (328)
T ss_pred CEEEEE-CCCCChHHHHHHHHHhCCCCEEE
Confidence 455543 46899999999999999999764
No 176
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=61.29 E-value=37 Score=35.43 Aligned_cols=67 Identities=12% Similarity=0.125 Sum_probs=41.6
Q ss_pred HHHHHHhhc-CCCCEEEE--EcCCCcCchhHHhHhhhhcCC--CEEEEEcCCcccCccchHHHHHHHHhcCCc
Q psy1765 167 EVESFVKGL-NNGRVHLY--RTSKREGLIRARMFGAKYATG--KVLVFLDSHIEVNTHWLEPLLVPIAERTNT 234 (867)
Q Consensus 167 ~l~~~~~~~-~~~~vrii--~~~~n~G~a~ArN~G~~~A~G--d~llfLDaD~~v~p~wLe~Ll~~l~~~~~~ 234 (867)
.+.+++... ....+.++ ..++..|.+.+.-.+...... +-++++++|...+.+ +..+++.+.+.+..
T Consensus 59 ~~~~~l~~~~~~~~~~i~~~~~~~~~G~~~al~~a~~~~~~~~~~~lv~~~D~~~~~~-~~~~~~~~~~~~~~ 130 (233)
T cd06425 59 DMVPFLKEYEKKLGIKITFSIETEPLGTAGPLALARDLLGDDDEPFFVLNSDVICDFP-LAELLDFHKKHGAE 130 (233)
T ss_pred HHHHHHhcccccCCeEEEeccCCCCCccHHHHHHHHHHhccCCCCEEEEeCCEeeCCC-HHHHHHHHHHcCCC
Confidence 344555432 01234443 345567888888888777643 345666999887766 57888877665543
No 177
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=59.75 E-value=17 Score=37.24 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=23.4
Q ss_pred cchhhHHHhhhhhhhhccccccccceeEEEEEeCCCC
Q psy1765 123 KREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSE 159 (867)
Q Consensus 123 ~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~St 159 (867)
++.|++.|+|.|++.|+|++++ .+|+...
T Consensus 68 ~~~G~~~a~N~g~~~a~gd~i~--------~lD~D~~ 96 (219)
T cd06913 68 SPKGVGYAKNQAIAQSSGRYLC--------FLDSDDV 96 (219)
T ss_pred CCccHHHHHHHHHHhcCCCEEE--------EECCCcc
Confidence 4679999999999999998764 6666554
No 178
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=59.44 E-value=85 Score=31.25 Aligned_cols=51 Identities=16% Similarity=0.059 Sum_probs=37.5
Q ss_pred CCEEEE--EcCCCcCchhHH----hHhhhhcCCCEEEEEcCCcccCccchHHHHHHH
Q psy1765 178 GRVHLY--RTSKREGLIRAR----MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 228 (867)
Q Consensus 178 ~~vrii--~~~~n~G~a~Ar----N~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l 228 (867)
..+.++ --++|.|..... |.=.+.-+.+|.++||+.+.+.++.|-.|.++|
T Consensus 107 ~PvQ~ifclKe~N~kKinSHrWfFnaf~~~l~P~vcvllDvGT~P~~~siy~Lwkaf 163 (163)
T PF01644_consen 107 VPVQIIFCLKEKNAKKINSHRWFFNAFCRQLQPNVCVLLDVGTKPGKDSIYHLWKAF 163 (163)
T ss_pred CCEEEEEEeccccccccchhhHHHHHHHhhcCCcEEEEEecCCCcCchHHHHHHhhC
Confidence 355553 345688877664 344456689999999999999999998887753
No 179
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=58.06 E-value=21 Score=35.48 Aligned_cols=59 Identities=19% Similarity=0.260 Sum_probs=45.8
Q ss_pred CEEEEEcC-CCcCchhHHhHhhhhcCCCEEEEEcCCcc-cCccchHHHHHHHHhcCCceeee
Q psy1765 179 RVHLYRTS-KREGLIRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP 238 (867)
Q Consensus 179 ~vrii~~~-~n~G~a~ArN~G~~~A~Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~~~vv~p 238 (867)
.++++..+ ...|...+...|++....+.++++.+|.- ++++.++.+++.+ ..+..++.|
T Consensus 58 ~~~~v~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~~ 118 (181)
T cd02503 58 GVPVIPDEPPGKGPLAGILAALRAAPADWVLVLACDMPFLPPELLERLLAAA-EEGADAVVP 118 (181)
T ss_pred CCcEeeCCCCCCCCHHHHHHHHHhcCCCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEEE
Confidence 45666654 36788899999999888999999999995 5899999999988 444444444
No 180
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=57.72 E-value=90 Score=36.18 Aligned_cols=66 Identities=18% Similarity=0.102 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcC--CCEEEEEcCCc-ccCccchHHHHHHHHhcCCc
Q psy1765 167 EVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTNT 234 (867)
Q Consensus 167 ~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~--Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~~ 234 (867)
.+.+++... ..++++..+...|.+.+.-.++.... .+.++++++|. .+.+.-++.+++.+.+....
T Consensus 57 ~i~~~~~~~--~~i~~v~~~~~~G~~~sv~~~~~~l~~~~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~ 125 (450)
T PRK14360 57 EVEQSLAHL--PGLEFVEQQPQLGTGHAVQQLLPVLKGFEGDLLVLNGDVPLLRPETLEALLNTHRSSNAD 125 (450)
T ss_pred HHHHHhccc--CCeEEEEeCCcCCcHHHHHHHHHHhhccCCcEEEEeCCccccCHHHHHHHHHHHHhcCCc
Confidence 455555443 36888877666788777777766543 35678899998 46888999999888765543
No 181
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=57.20 E-value=17 Score=37.65 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.2
Q ss_pred ceEEEEeccchhhHHHhhhhhhhhcc
Q psy1765 115 RVHLYRTSKREGLIRARMFGAKYATG 140 (867)
Q Consensus 115 ~~~~~~~~~~~gi~~a~~~g~~~a~g 140 (867)
++++++.++|.|++.|+|.|++.|.|
T Consensus 48 ~i~~i~~~~n~G~~~a~N~g~~~a~~ 73 (237)
T cd02526 48 KIELIHLGENLGIAKALNIGIKAALE 73 (237)
T ss_pred cEEEEECCCceehHHhhhHHHHHHHh
Confidence 46677888899999999999999988
No 182
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=56.76 E-value=28 Score=37.27 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=52.0
Q ss_pred CCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCC
Q psy1765 203 TGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDF 282 (867)
Q Consensus 203 ~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~ 282 (867)
..+|++++|+|+.+...-|..+|..+.......++-.. .+... . + . ..+... .
T Consensus 86 ~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~--~~~~~-~--------~-~---~~~~~~----~-------- 138 (252)
T PF02434_consen 86 DKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPS--GDRPI-E--------I-I---HRFNPN----K-------- 138 (252)
T ss_dssp T-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE------------------------------------------
T ss_pred CceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeec--cCccc-e--------e-e---cccccc----c--------
Confidence 45999999999999888888888877654433222111 00000 0 0 0 000000 0
Q ss_pred CCcccc-cccccceEeEeHHHHHHh-----C-CCCCCCC-CCcccchHHHHHHHH-cCCeEEEEc
Q psy1765 283 IKPILS-PTMAGGLFAIDRQYFDSL-----G-QYDAGLE-IWGGENLELSFRIWM-CGGSLAMIP 338 (867)
Q Consensus 283 ~~p~~~-~~~~G~~~airR~~f~~v-----G-gfDe~~~-~~G~ED~Dls~Rl~~-~G~~i~~~P 338 (867)
...... .+..|+-++++|.+.+++ + .+-.... +-..||+.|++-+.. .|.++...|
T Consensus 139 ~~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~ 203 (252)
T PF02434_consen 139 SKDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSP 203 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-T
T ss_pred cCcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeech
Confidence 000011 134467799999999998 2 2211111 123799999999988 888776554
No 183
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=56.13 E-value=1.2e+02 Score=31.19 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=35.5
Q ss_pred CEEEEEcC-CCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHH
Q psy1765 179 RVHLYRTS-KREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIA 229 (867)
Q Consensus 179 ~vrii~~~-~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~ 229 (867)
.+.++... +..|.+.|...+......+.++++++|.....+..+ +++...
T Consensus 71 ~i~~~~~~~~~~g~~~~l~~~~~~~~~~~~lv~~~D~i~~~~~~~-~~~~~~ 121 (221)
T cd06422 71 RITISDEPDELLETGGGIKKALPLLGDEPFLVVNGDILWDGDLAP-LLLLHA 121 (221)
T ss_pred eEEEecCCCcccccHHHHHHHHHhcCCCCEEEEeCCeeeCCCHHH-HHHHHH
Confidence 34444444 457888888888887766889999999998887555 555444
No 184
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=55.27 E-value=1.7e+02 Score=34.35 Aligned_cols=76 Identities=20% Similarity=0.256 Sum_probs=51.9
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcC---CCEEEEEcCCc-ccCccchHHH
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT---GKVLVFLDSHI-EVNTHWLEPL 224 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~---Gd~llfLDaD~-~v~p~wLe~L 224 (867)
.+|+||=+.. .+.+.+++.. ..+.++..+...|.+.+.-.|++... .+ ++++++|. .+.+.-++.|
T Consensus 51 ~~ivvv~~~~------~~~i~~~~~~---~~i~~v~~~~~~Gt~~al~~~~~~l~~~~~~-~lV~~gD~P~i~~~~l~~l 120 (481)
T PRK14358 51 RKIVVVTGHG------AEQVEAALQG---SGVAFARQEQQLGTGDAFLSGASALTEGDAD-ILVLYGDTPLLRPDTLRAL 120 (481)
T ss_pred CeEEEEeCCC------HHHHHHHhcc---CCcEEecCCCcCCcHHHHHHHHHHhhCCCCc-EEEEeCCeeccCHHHHHHH
Confidence 4666664321 2345555543 36888888778899888887877652 34 66789998 5678889999
Q ss_pred HHHHHhcCCc
Q psy1765 225 LVPIAERTNT 234 (867)
Q Consensus 225 l~~l~~~~~~ 234 (867)
++.+.+....
T Consensus 121 l~~~~~~~~~ 130 (481)
T PRK14358 121 VADHRAQGSA 130 (481)
T ss_pred HHHHHhcCCe
Confidence 9888665543
No 185
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=54.82 E-value=92 Score=36.32 Aligned_cols=55 Identities=13% Similarity=0.076 Sum_probs=42.5
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcC--CCEEEEEcCCc-ccCccchHHHHHHHHhcCC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYAT--GKVLVFLDSHI-EVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~--Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~ 233 (867)
.+.++..++..|.+.+.-.++.... .+.++++++|. .+.+..++.+++.+.+...
T Consensus 69 ~i~~~~~~~~~Gt~~al~~a~~~l~~~~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~ 126 (459)
T PRK14355 69 DVSFALQEEQLGTGHAVACAAPALDGFSGTVLILCGDVPLLRAETLQGMLAAHRATGA 126 (459)
T ss_pred ceEEEecCCCCCHHHHHHHHHHHhhccCCcEEEEECCccCcCHHHHHHHHHHHHhcCC
Confidence 5667666667788888888877654 47899999998 5688899999998866543
No 186
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=54.51 E-value=17 Score=37.26 Aligned_cols=28 Identities=32% Similarity=0.271 Sum_probs=23.7
Q ss_pred eEEEEeccchhhHHHhhhhhhhhccccc
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNR 143 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~ 143 (867)
++++..++|.|.+.|+|.|++.|.|+++
T Consensus 55 i~~~~~~~n~G~~~a~n~g~~~a~gd~i 82 (224)
T cd06442 55 VRLIVRPGKRGLGSAYIEGFKAARGDVI 82 (224)
T ss_pred eEEEecCCCCChHHHHHHHHHHcCCCEE
Confidence 4566778899999999999999999654
No 187
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=53.87 E-value=34 Score=34.67 Aligned_cols=59 Identities=22% Similarity=0.245 Sum_probs=45.4
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcC--CCEEEEEcCCcc-cCccchHHHHHHHHhcCCceeeeE
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYAT--GKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPI 239 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~--Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~~~vv~p~ 239 (867)
.+.++.++. .|+..+...|++++. ++.++++-+|+- +.+..|+.+++.+.. ...+++|.
T Consensus 65 ~v~~i~~~~-~G~~~si~~al~~~~~~~~~vlv~~~D~P~l~~~~i~~l~~~~~~-~~~vi~p~ 126 (195)
T TIGR03552 65 GAPVLRDPG-PGLNNALNAALAEAREPGGAVLILMADLPLLTPRELKRLLAAATE-GDVVIAPD 126 (195)
T ss_pred CCEEEecCC-CCHHHHHHHHHHHhhccCCeEEEEeCCCCCCCHHHHHHHHHhccc-CCEEEEec
Confidence 677777764 499999999988753 468999999986 589999999998753 34566663
No 188
>KOG1476|consensus
Probab=52.17 E-value=1.1e+02 Score=33.56 Aligned_cols=40 Identities=33% Similarity=0.318 Sum_probs=27.4
Q ss_pred CCcEEEEEEeCCCCh--HHHHHHHHHHHhcCccccccEEEEEECCC
Q psy1765 51 LPSTSVIICFYNEHP--ATLYRSVQTLLSRTGQSLLHEIILVNDFS 94 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~--~~l~~~l~Svl~qt~~~~~~EiIlVDd~S 94 (867)
.|.|-||.|+|+... ..|-+.-++| .+-+ ++ -.|||+||+
T Consensus 86 ~~~iivVTPTY~R~~q~~~LtRlanTL-~~V~-nL--hWIVVEd~~ 127 (330)
T KOG1476|consen 86 LPTIIVVTPTYVRPVQAAELTRLANTL-RLVP-NL--HWIVVEDGE 127 (330)
T ss_pred CccEEEEcccccchhHHHHHHHHHHHH-hhcC-Ce--eEEEEecCC
Confidence 688999999998542 2344444443 3443 77 789999996
No 189
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=51.03 E-value=25 Score=33.60 Aligned_cols=36 Identities=25% Similarity=0.278 Sum_probs=27.0
Q ss_pred eEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCC
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSE 159 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~St 159 (867)
++++..++|.|++.|+|.|+..|.++++ +++|+...
T Consensus 51 ~~~~~~~~~~g~~~a~n~~~~~~~~~~i--------~~~D~D~~ 86 (166)
T cd04186 51 VRLIRNGENLGFGAGNNQGIREAKGDYV--------LLLNPDTV 86 (166)
T ss_pred eEEEecCCCcChHHHhhHHHhhCCCCEE--------EEECCCcE
Confidence 3455566788999999999999987764 46666554
No 190
>PRK11204 N-glycosyltransferase; Provisional
Probab=49.60 E-value=29 Score=39.86 Aligned_cols=58 Identities=12% Similarity=0.049 Sum_probs=37.4
Q ss_pred eEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEE
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLY 183 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii 183 (867)
++++..++|.|.+.|.|.|++.|.||++ +++|+.+..+.+..+.+.+...+. +++-.+
T Consensus 111 v~~i~~~~n~Gka~aln~g~~~a~~d~i--------~~lDaD~~~~~d~L~~l~~~~~~~--~~v~~v 168 (420)
T PRK11204 111 LRVIHLAENQGKANALNTGAAAARSEYL--------VCIDGDALLDPDAAAYMVEHFLHN--PRVGAV 168 (420)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE--------EEECCCCCCChhHHHHHHHHHHhC--CCeEEE
Confidence 4555566788999999999999998764 477877764433333343333332 555544
No 191
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=48.20 E-value=1.5e+02 Score=31.91 Aligned_cols=40 Identities=18% Similarity=0.164 Sum_probs=31.3
Q ss_pred CCEEEEEcCCCcCchhHHhHhhhhcC----CCEEEEEcCCcccC
Q psy1765 178 GRVHLYRTSKREGLIRARMFGAKYAT----GKVLVFLDSHIEVN 217 (867)
Q Consensus 178 ~~vrii~~~~n~G~a~ArN~G~~~A~----Gd~llfLDaD~~v~ 217 (867)
+.+.++..+...|-+.|.-.++.... .++++++.+|..+.
T Consensus 73 ~~~~ii~ep~~~gTa~ai~~a~~~~~~~~~~~~vlVl~~D~~i~ 116 (274)
T cd02509 73 PEENIILEPEGRNTAPAIALAALYLAKRDPDAVLLVLPSDHLIE 116 (274)
T ss_pred CCceEEECCCCCCcHHHHHHHHHHHHhcCCCCeEEEecchhccc
Confidence 46778878878888888877776643 57899999998775
No 192
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=47.34 E-value=86 Score=36.25 Aligned_cols=53 Identities=15% Similarity=0.140 Sum_probs=40.2
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcC-CCEEEEEcCCc-ccCccchHHHHHHHHhc
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAER 231 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~-Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~ 231 (867)
.+.++..++..|.+.+.-.++.... .+.++++++|. .+++..++.+++.+.+.
T Consensus 65 ~i~~~~~~~~~G~~~ai~~a~~~l~~~~~~lv~~~D~p~i~~~~~~~l~~~~~~~ 119 (451)
T TIGR01173 65 DVNWVLQAEQLGTGHAVLQALPFLPDDGDVLVLYGDVPLISAETLERLLEAHRQN 119 (451)
T ss_pred CcEEEEcCCCCchHHHHHHHHHhcCCCCcEEEEECCcCCcCHHHHHHHHHHHhhC
Confidence 4566665556788888888877764 47899999998 56888999999887654
No 193
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=45.27 E-value=4e+02 Score=29.69 Aligned_cols=67 Identities=10% Similarity=0.125 Sum_probs=43.2
Q ss_pred HHHHHHHhhcC--CCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCC
Q psy1765 166 GEVESFVKGLN--NGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 166 ~~l~~~~~~~~--~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~ 233 (867)
+.+.+++.... ...+.++..+...|.+.+.-.+...-..+-++++.+|..++ .-+.++++.+.+...
T Consensus 58 ~~i~~~~~~~~~~~~~~~~~~~~~~~G~~~al~~a~~~l~~~~~li~~gD~~~~-~~l~~l~~~~~~~~~ 126 (353)
T TIGR01208 58 EEIKEIVGEGERFGAKITYIVQGEPLGLAHAVYTARDFLGDDDFVVYLGDNLIQ-DGISRFVKSFEEKDY 126 (353)
T ss_pred HHHHHHHhcccccCceEEEEECCCCCCHHHHHHHHHHhcCCCCEEEEECCeecC-ccHHHHHHHHHhcCC
Confidence 45666665321 12466666666789988888887766444455667898775 456778877765443
No 194
>TIGR00334 5S_RNA_mat_M5 ribonuclease M5. This family of orthologous proteins shows a weak but significant similarity to the central region of the DnaG-type DNA primase. The region of similarity is termed the Toprim (topoisomerase-primase) domain and is also shared by RecR, OLD family nucleases, and type IA and II topoisomerases.
Probab=45.26 E-value=45 Score=33.51 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=31.9
Q ss_pred eeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc--CCCEEEEEcCCc
Q psy1765 148 LHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA--TGKVLVFLDSHI 214 (867)
Q Consensus 148 l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A--~Gd~llfLDaD~ 214 (867)
+.|||||+- -+| ...+.+.+ .+.+|... ..++....-.-++.| +-.+++|+|+|-
T Consensus 2 IkevIVVEG-K~D----~~~lk~~~------d~~~I~T~-Gs~i~~~~i~~i~~~~~~rgVIIfTDpD~ 58 (174)
T TIGR00334 2 IKEIIVVEG-KDD----QARIKQAF------DVDVIETN-GSALKDETINLIKKAQKKQGVIILTDPDF 58 (174)
T ss_pred CCeEEEEec-chH----HHHHHHhc------CceEEEEC-CCccCHHHHHHHHHHhhcCCEEEEeCCCC
Confidence 469999973 333 22333322 36677665 344444433333333 578999999996
No 195
>cd06431 GT8_LARGE_C LARGE catalytic domain has closest homology to GT8 glycosyltransferase involved in lipooligosaccharide synthesis. The catalytic domain of LARGE is a putative glycosyltransferase. Mutations of LARGE in mouse and human cause dystroglycanopathies, a disease associated with hypoglycosylation of the membrane protein alpha-dystroglycan (alpha-DG) and consequent loss of extracellular ligand binding. LARGE needs to both physically interact with alpha-dystroglycan and function as a glycosyltransferase in order to stimulate alpha-dystroglycan hyperglycosylation. LARGE localizes to the Golgi apparatus and contains three conserved DxD motifs. While two of the motifs are indispensible for glycosylation function, one is important for localization of th eenzyme. LARGE was originally named because it covers approximately large trunck of genomic DNA, more than 600bp long. The predicted protein structure contains an N-terminal cytoplasmic domain, a transmembrane region, a coiled-coil
Probab=45.08 E-value=1.1e+02 Score=33.30 Aligned_cols=42 Identities=17% Similarity=0.199 Sum_probs=31.0
Q ss_pred cEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCC
Q psy1765 53 STSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYP 97 (867)
Q Consensus 53 ~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~ 97 (867)
.++||....| -...+..+|.||+......+ .+-|++|+.+++
T Consensus 2 ~~~iv~~~~~-y~~~~~~~i~Sil~n~~~~~--~fhii~d~~s~~ 43 (280)
T cd06431 2 HVAIVCAGYN-ASRDVVTLVKSVLFYRRNPL--HFHLITDEIARR 43 (280)
T ss_pred EEEEEEccCC-cHHHHHHHHHHHHHcCCCCE--EEEEEECCcCHH
Confidence 3678888855 34488999999998765555 888888766554
No 196
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=44.92 E-value=37 Score=32.22 Aligned_cols=36 Identities=17% Similarity=0.153 Sum_probs=27.5
Q ss_pred EEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCC
Q psy1765 117 HLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEY 160 (867)
Q Consensus 117 ~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std 160 (867)
+++...+|.|+..|+|.|+.++.++++ +++|+....
T Consensus 56 ~~~~~~~~~g~~~~~n~~~~~~~~~~i--------~~~D~D~~~ 91 (180)
T cd06423 56 LVVRDKENGGKAGALNAGLRHAKGDIV--------VVLDADTIL 91 (180)
T ss_pred EEEEecccCCchHHHHHHHHhcCCCEE--------EEECCCCCc
Confidence 445566788999999999999988755 467766654
No 197
>PF03552 Cellulose_synt: Cellulose synthase; InterPro: IPR005150 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity [].; GO: 0016760 cellulose synthase (UDP-forming) activity, 0030244 cellulose biosynthetic process, 0016020 membrane
Probab=44.61 E-value=43 Score=40.91 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=44.0
Q ss_pred CCEEEEEcCCCcC-----chhHHhHhhhhc----CCCEEEEEcCCccc-CccchHHHHHHHHhcC
Q psy1765 178 GRVHLYRTSKREG-----LIRARMFGAKYA----TGKVLVFLDSHIEV-NTHWLEPLLVPIAERT 232 (867)
Q Consensus 178 ~~vrii~~~~n~G-----~a~ArN~G~~~A----~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~ 232 (867)
|.+.++..+++.| .++|+|.-++.+ .|+||+-||.|..+ ++..+...+-.+....
T Consensus 166 P~lvYvsREKrp~~~Hh~KAGAmNaL~RvSa~~tN~p~iLnlDcD~y~nn~~~~~~amc~~~d~~ 230 (720)
T PF03552_consen 166 PMLVYVSREKRPGYPHHFKAGAMNALLRVSAVMTNAPFILNLDCDMYINNSQALREAMCFFMDPK 230 (720)
T ss_pred CeEEEEeccCCCCCCchhhhcccccccccceeecCCCEEEEecccccccchHHHHHHHHhhccCC
Confidence 7888998888877 467888877654 79999999999987 6888888877776443
No 198
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=44.21 E-value=5.4e+02 Score=29.42 Aligned_cols=46 Identities=22% Similarity=0.127 Sum_probs=28.3
Q ss_pred CCEEEEEcCC--CcCchhHHhHhhhhcCCCEEEEEcCCcc-cCccchHHHH
Q psy1765 178 GRVHLYRTSK--REGLIRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLL 225 (867)
Q Consensus 178 ~~vrii~~~~--n~G~a~ArN~G~~~A~Gd~llfLDaD~~-v~p~wLe~Ll 225 (867)
..++++..++ ..|.+.|... + ....|.++++++|.. ..+..++.++
T Consensus 67 ~~v~~~~~~~~~~~gt~~al~~-~-~~~~d~vlv~~gD~p~~~~~~l~~l~ 115 (430)
T PRK14359 67 PGVIFHTQDLENYPGTGGALMG-I-EPKHERVLILNGDMPLVEKDELEKLL 115 (430)
T ss_pred CceEEEEecCccCCCcHHHHhh-c-ccCCCeEEEEECCccCCCHHHHHHHH
Confidence 3577766542 2566665543 2 224688999999984 4666666554
No 199
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=43.76 E-value=65 Score=33.38 Aligned_cols=68 Identities=15% Similarity=0.356 Sum_probs=46.3
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCC--CcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHH
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSK--REGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLL 225 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~--n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll 225 (867)
.+|+||=..- .+.+.+++... ..+.++.++. ..|.+.+...|.... .+.++++++|..+.++.++.++
T Consensus 45 ~~i~vv~~~~------~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~s~~~~~~~~-~~~~lv~~~D~~~~~~~~~~~~ 114 (229)
T cd02523 45 DDIVIVTGYK------KEQIEELLKKY--PNIKFVYNPDYAETNNIYSLYLARDFL-DEDFLLLEGDVVFDPSILERLL 114 (229)
T ss_pred ceEEEEeccC------HHHHHHHHhcc--CCeEEEeCcchhhhCcHHHHHHHHHHc-CCCEEEEeCCEecCHHHHHHHH
Confidence 4566664321 34456665543 4677777653 578888888888877 5778889999988876666554
No 200
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=43.12 E-value=44 Score=35.07 Aligned_cols=29 Identities=28% Similarity=0.298 Sum_probs=23.6
Q ss_pred eEEEEeccchhhHHHhhhhhhhhcccccc
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNRI 144 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~~ 144 (867)
+.++..++|.|...|.|.|++.|.|++++
T Consensus 70 v~~~~~~~n~G~~~a~n~g~~~a~g~~i~ 98 (243)
T PLN02726 70 ILLRPRPGKLGLGTAYIHGLKHASGDFVV 98 (243)
T ss_pred EEEEecCCCCCHHHHHHHHHHHcCCCEEE
Confidence 45556677889999999999999998653
No 201
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=43.04 E-value=30 Score=35.26 Aligned_cols=28 Identities=21% Similarity=0.131 Sum_probs=23.8
Q ss_pred eEEEEeccchhhHHHhhhhhhhhccccc
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNR 143 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~ 143 (867)
++++..++|.|.+.|.|.|+.+|.|+++
T Consensus 59 i~~i~~~~n~G~~~a~~~g~~~a~gd~i 86 (211)
T cd04188 59 IRVLTLPKNRGKGGAVRAGMLAARGDYI 86 (211)
T ss_pred EEEEEcccCCCcHHHHHHHHHHhcCCEE
Confidence 3566777889999999999999999755
No 202
>COG0463 WcaA Glycosyltransferases involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=40.97 E-value=26 Score=33.96 Aligned_cols=55 Identities=22% Similarity=0.151 Sum_probs=35.9
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcc
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIE 215 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~ 215 (867)
+|||||||||+ ....+.+..+ .... ..-.......|.|...|....+.+.+.|-.
T Consensus 33 ~eiivvddgs~------d~t~~~~~~~-~~~~-----~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 87 (291)
T COG0463 33 FEIIVVDDGST------DGTTEIAIEY-GAKD-----VRVIRLINERNGGLGAARNAGLEYARGDYI 87 (291)
T ss_pred eEEEEEeCCCC------CChHHHHHHH-hhhc-----ceEEEeecccCCChHHHHHhhHHhccCCEE
Confidence 59999999998 5555555544 1112 223344456788888888887777777544
No 203
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=40.91 E-value=38 Score=33.38 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=22.6
Q ss_pred eEEEEeccchhhHHHhhhhhhhhccccc
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNR 143 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~ 143 (867)
++++..++|.|.+.|.|.|++.|.|+++
T Consensus 57 i~~i~~~~n~G~~~a~n~g~~~a~~d~i 84 (181)
T cd04187 57 VKVIRLSRNFGQQAALLAGLDHARGDAV 84 (181)
T ss_pred EEEEEecCCCCcHHHHHHHHHhcCCCEE
Confidence 4455566788999999999999998654
No 204
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=40.63 E-value=39 Score=33.18 Aligned_cols=35 Identities=23% Similarity=0.120 Sum_probs=27.3
Q ss_pred EEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCC
Q psy1765 117 HLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSE 159 (867)
Q Consensus 117 ~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~St 159 (867)
+++..++|.|++.|+|.|+..|.|+++ +++|+...
T Consensus 57 ~~~~~~~n~G~~~a~n~g~~~a~gd~i--------~~lD~D~~ 91 (185)
T cd04179 57 RVIRLSRNFGKGAAVRAGFKAARGDIV--------VTMDADLQ 91 (185)
T ss_pred EEEEccCCCCccHHHHHHHHHhcCCEE--------EEEeCCCC
Confidence 355667788999999999999999764 46666654
No 205
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=39.36 E-value=2.2e+02 Score=32.96 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=41.7
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcC-CCEEEEEcCCc-ccCccchHHHHHHHHhcCCce
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAERTNTV 235 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~-Gd~llfLDaD~-~v~p~wLe~Ll~~l~~~~~~v 235 (867)
.+.++..++..|.+.+...++.... .+.++++++|. .+.+..++.+++.+.+....+
T Consensus 63 ~~~~~~~~~~~g~~~ai~~a~~~l~~~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ 121 (448)
T PRK14357 63 WVKIFLQEEQLGTAHAVMCARDFIEPGDDLLILYGDVPLISENTLKRLIEEHNRKGADV 121 (448)
T ss_pred ccEEEecCCCCChHHHHHHHHHhcCcCCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeE
Confidence 3455555567788888888877654 58999999998 467788899998886654433
No 206
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=38.79 E-value=62 Score=33.13 Aligned_cols=52 Identities=15% Similarity=0.194 Sum_probs=43.0
Q ss_pred CEEEEEcCC-CcCchhHHhHhhhhcCCCEEEEEcCCccc-CccchHHHHHHHHh
Q psy1765 179 RVHLYRTSK-REGLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAE 230 (867)
Q Consensus 179 ~vrii~~~~-n~G~a~ArN~G~~~A~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~ 230 (867)
.++++..+. ..|...+.-.|++....++++++++|.-+ +++.++.|++.+..
T Consensus 67 ~~~~i~~~~~~~G~~~si~~~l~~~~~~~vlv~~~D~P~i~~~~i~~l~~~~~~ 120 (200)
T PRK02726 67 GCHWLREPPPSQGPLVAFAQGLPQIKTEWVLLLACDLPRLTVDVLQEWLQQLEN 120 (200)
T ss_pred CCeEecCCCCCCChHHHHHHHHHhCCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Confidence 466666543 47889999999998888999999999865 89999999998764
No 207
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=38.46 E-value=4.4e+02 Score=26.75 Aligned_cols=145 Identities=15% Similarity=0.145 Sum_probs=73.5
Q ss_pred HHHHHHHhhcC--CCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeee
Q psy1765 166 GEVESFVKGLN--NGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDII 243 (867)
Q Consensus 166 ~~l~~~~~~~~--~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i 243 (867)
+.+.+++.... ...+.++..+...|.+.+.-.+.. ...+.++++++|.... .-+..+++.+......++.......
T Consensus 56 ~~i~~~~~~~~~~~~~i~~~~~~~~~g~~~~l~~~~~-~~~~~~lv~~~D~i~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 133 (220)
T cd06426 56 EMIEDYFGDGSKFGVNISYVREDKPLGTAGALSLLPE-KPTDPFLVMNGDILTN-LNYEHLLDFHKENNADATVCVREYE 133 (220)
T ss_pred HHHHHHHCCccccCccEEEEECCCCCcchHHHHHHHh-hCCCCEEEEcCCEeec-cCHHHHHHHHHhcCCCEEEEEEEcC
Confidence 34555554321 124666666556787777654443 3367788889997554 4677888887665443333222111
Q ss_pred cCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcccchHH
Q psy1765 244 NADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLEL 323 (867)
Q Consensus 244 ~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dl 323 (867)
....+.+.. ... ..-..+. . .|.....+.+|.+.+++++|+.+- ++-. .+-.|+
T Consensus 134 ~~~~~g~~~----~d~-~~v~~~~---------e------k~~~~~~~~~Giy~~~~~~~~~i~---~~~~---~~l~~~ 187 (220)
T cd06426 134 VQVPYGVVE----TEG-GRITSIE---------E------KPTHSFLVNAGIYVLEPEVLDLIP---KNEF---FDMPDL 187 (220)
T ss_pred CCCcceEEE----ECC-CEEEEEE---------E------CCCCCCeEEEEEEEEcHHHHhhcC---CCCC---cCHHHH
Confidence 111111000 000 0000010 0 011123456788999999998763 1100 122466
Q ss_pred HHHHHHcCCeEEEEc
Q psy1765 324 SFRIWMCGGSLAMIP 338 (867)
Q Consensus 324 s~Rl~~~G~~i~~~P 338 (867)
..++...|.++...+
T Consensus 188 ~~~~i~~~~~i~~~~ 202 (220)
T cd06426 188 IEKLIKEGKKVGVFP 202 (220)
T ss_pred HHHHHHCCCcEEEEE
Confidence 677777887665443
No 208
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=38.24 E-value=63 Score=36.04 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=25.4
Q ss_pred ceEEEEeccchhhHHHhhhhhhhhccccc
Q psy1765 115 RVHLYRTSKREGLIRARMFGAKYATGKNR 143 (867)
Q Consensus 115 ~~~~~~~~~~~gi~~a~~~g~~~a~g~~~ 143 (867)
+++++...+|.|...|.|.|+.+|.|+++
T Consensus 138 ~i~vi~~~~N~G~~~A~~~Gi~~a~gd~I 166 (333)
T PTZ00260 138 DIRLLSLLRNKGKGGAVRIGMLASRGKYI 166 (333)
T ss_pred cEEEEEcCCCCChHHHHHHHHHHccCCEE
Confidence 46777888999999999999999999864
No 209
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=38.21 E-value=74 Score=31.93 Aligned_cols=29 Identities=24% Similarity=0.178 Sum_probs=23.8
Q ss_pred eEEEEeccchhhHHHhhhhhhhhcccccc
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNRI 144 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~~ 144 (867)
++++..++|.|.+++.|.|+..|.|++++
T Consensus 56 ~~~~~~~~~~G~~~~~n~g~~~~~g~~v~ 84 (214)
T cd04196 56 IILIRNGKNLGVARNFESLLQAADGDYVF 84 (214)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCCCCEEE
Confidence 34556677899999999999999998764
No 210
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=38.16 E-value=2.4e+02 Score=28.77 Aligned_cols=51 Identities=6% Similarity=0.076 Sum_probs=36.8
Q ss_pred CchhHHhHhhhhcC-----CCEEEEEcCCccc-CccchHHHHHHHHhcCCceeeeEE
Q psy1765 190 GLIRARMFGAKYAT-----GKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTVTVPII 240 (867)
Q Consensus 190 G~a~ArN~G~~~A~-----Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~~~vv~p~i 240 (867)
|...+.-.|++... .+.++++++|.-+ .+..++.+++.+......++.+..
T Consensus 79 ~~~~~i~~~l~~l~~~~~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 79 SSIDVILHALDQLEELGRDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred CcHHHHHHHHHHHHHhCCCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 55566666665442 3899999999964 899999999998765545555544
No 211
>PF07598 DUF1561: Protein of unknown function (DUF1561); InterPro: IPR011455 This is a family of paralogous proteins in Leptospira interrogans.
Probab=37.42 E-value=60 Score=38.12 Aligned_cols=77 Identities=17% Similarity=0.226 Sum_probs=47.8
Q ss_pred EEecCCCceEeecCCCCCCCceEEecCCCCCC-CccE-EEccCCcEEeccCceeeeCCC---------CcEEEecCCCCC
Q psy1765 680 IRLSGTDLCLTSKVDKTKGSPLVLKKCDELSK-TQRW-SKTDKSELVLAELLCLDAGAT---------KPKLTKCHEMGG 748 (867)
Q Consensus 680 i~~~~sg~CLd~~~~~~~g~~v~l~~C~~~~~-~Q~W-~~~~~~~~~~~s~~CLD~~g~---------~v~~~~C~~~~~ 748 (867)
.+|.....|....-. .+-+-+.+..|..+.. .-+. .|....--..+.-+|+.+..+ -|.+.||.-+++
T Consensus 42 ~vh~g~~yCY~P~F~-~GEsYi~i~~C~~~~v~~ARYDvFqRIswnin~tWLCmTAP~sVtk~~~~WdYl~LRPCvINDp 120 (632)
T PF07598_consen 42 KVHDGGEYCYAPVFS-GGESYIYIEDCSSSHVMKARYDVFQRISWNINNTWLCMTAPESVTKSTANWDYLLLRPCVINDP 120 (632)
T ss_pred EEcCCCceEecceec-CCceeEEEecccCcccchhhhceeeeEEEEeCCEEEEEecCchhcccccccceEEEeeeeECCC
Confidence 355566789986221 2235789999987433 1111 111111112335799998632 788999998889
Q ss_pred CCeEEEecC
Q psy1765 749 SQEWNFVLR 757 (867)
Q Consensus 749 ~Q~W~~~~~ 757 (867)
+|+|.+.++
T Consensus 121 nQrWIIKdn 129 (632)
T PF07598_consen 121 NQRWIIKDN 129 (632)
T ss_pred CceEEEeCC
Confidence 999998754
No 212
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=37.20 E-value=3.8e+02 Score=30.74 Aligned_cols=157 Identities=16% Similarity=0.136 Sum_probs=82.6
Q ss_pred chHHHHHHHhhcCCCCEEEEEcCCCcC-ch----hHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeee
Q psy1765 164 LHGEVESFVKGLNNGRVHLYRTSKREG-LI----RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVP 238 (867)
Q Consensus 164 ~~~~l~~~~~~~~~~~vrii~~~~n~G-~a----~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p 238 (867)
+...++...+++ ..|-++...+..- +. ...-.+.+....+|++-.|+|+.+..+-|-..|+.....+. +..+
T Consensus 194 ldr~Le~Ea~~y--gDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~mK~DDDvfVnv~~L~~~L~~~~~~~r-lYiG 270 (408)
T PLN03193 194 LDRAIEAEDRKH--GDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFYVKVDDDVHVNIATLGETLVRHRKKPR-VYIG 270 (408)
T ss_pred HHHHHHHHHHHh--CCEEEEecccccccchHHHHHHHHHHHHcCCCeEEEEcCCCceEcHHHHHHHHHhcCCCCC-EEEE
Confidence 344555555555 3454444333321 11 22233444558899999999999998777666654332222 3222
Q ss_pred EEeeecCCCceeccccccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHHHHHHhCCCCCCCCCCcc
Q psy1765 239 IIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGG 318 (867)
Q Consensus 239 ~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgfDe~~~~~G~ 318 (867)
.+.. . + .+. .-...|. .+........ .....|...|+..+|++++...|-.-...+..|..
T Consensus 271 ~m~~---g-------P-vr~----~~~~ky~-epe~w~~~~~---~~~YPpyAsG~gYVlS~DLa~~I~~n~~~L~~y~~ 331 (408)
T PLN03193 271 CMKS---G-------P-VLS----QKGVRYH-EPEYWKFGEN---GNKYFRHATGQLYAISKDLASYISINQHVLHKYAN 331 (408)
T ss_pred eccc---C-------c-ccc----CCCCcCc-CcccccccCc---cccCCCCCCcceEEehHHHHHHHHhChhhhcccCc
Confidence 2210 0 0 000 0000110 0100000000 01123678899999999998888644556667778
Q ss_pred cchHHHHHHHHcCCeEEEEcccEEEE
Q psy1765 319 ENLELSFRIWMCGGSLAMIPCSRIGH 344 (867)
Q Consensus 319 ED~Dls~Rl~~~G~~i~~~P~s~V~H 344 (867)
||+-+.. |..|..+.++.+.+..+
T Consensus 332 EDV~vG~--Wl~~L~V~~vdd~~fcc 355 (408)
T PLN03193 332 EDVSLGS--WFIGLDVEHIDDRRLCC 355 (408)
T ss_pred chhhhhh--HhccCCceeeecccccC
Confidence 8887765 66777777666555543
No 213
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=36.98 E-value=55 Score=32.28 Aligned_cols=25 Identities=24% Similarity=0.262 Sum_probs=20.7
Q ss_pred EEeccchhhHHHhhhhhhhhccccc
Q psy1765 119 YRTSKREGLIRARMFGAKYATGKNR 143 (867)
Q Consensus 119 ~~~~~~~gi~~a~~~g~~~a~g~~~ 143 (867)
+..++|.|++.|+|.|++.|.|+++
T Consensus 55 ~~~~~~~g~~~a~n~~~~~a~~~~v 79 (202)
T cd06433 55 WISEPDKGIYDAMNKGIALATGDII 79 (202)
T ss_pred EEecCCcCHHHHHHHHHHHcCCCEE
Confidence 3445788999999999999998755
No 214
>PRK10063 putative glycosyl transferase; Provisional
Probab=35.31 E-value=28 Score=37.03 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=22.0
Q ss_pred eEEEEeccchhhHHHhhhhhhhhcccccc
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNRI 144 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~~ 144 (867)
++++. ++|.|++.|+|.|+.+|+|++++
T Consensus 60 i~~i~-~~~~G~~~A~N~Gi~~a~g~~v~ 87 (248)
T PRK10063 60 LRFVS-EPDNGIYDAMNKGIAMAQGRFAL 87 (248)
T ss_pred EEEEE-CCCCCHHHHHHHHHHHcCCCEEE
Confidence 44444 34669999999999999998764
No 215
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=35.18 E-value=77 Score=36.80 Aligned_cols=35 Identities=20% Similarity=0.175 Sum_probs=25.5
Q ss_pred EEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCC
Q psy1765 117 HLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSE 159 (867)
Q Consensus 117 ~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~St 159 (867)
++...++|.|.+.|.|.|+..+.|++ |+++|....
T Consensus 109 ~v~~~~~~~Gka~AlN~gl~~s~g~~--------v~~~DaD~~ 143 (439)
T TIGR03111 109 SLRYMNSDQGKAKALNAAIYNSIGKY--------IIHIDSDGK 143 (439)
T ss_pred EEEEeCCCCCHHHHHHHHHHHccCCE--------EEEECCCCC
Confidence 33444567799999999999999875 456665554
No 216
>PF01501 Glyco_transf_8: Glycosyl transferase family 8; InterPro: IPR002495 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 8 GT8 from CAZY comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase (2.4.1.44 from EC), lipopolysaccharide glucosyltransferase 1 (2.4.1.58 from EC), glycogenin glucosyltransferase (2.4.1.186 from EC), inositol 1-alpha-galactosyltransferase (2.4.1.123 from EC). These enzymes have a distant similarity to family GT_24. ; GO: 0016757 transferase activity, transferring glycosyl groups; PDB: 1LL0_D 1ZCV_A 3USR_A 3V90_A 1ZCU_A 1ZCT_A 3V91_A 1ZCY_A 1ZDG_A 1ZDF_A ....
Probab=35.15 E-value=1.3e+02 Score=31.22 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=22.4
Q ss_pred chhHHhHhhhh-cCCCEEEEEcCCcccCccchHHHHH
Q psy1765 191 LIRARMFGAKY-ATGKVLVFLDSHIEVNTHWLEPLLV 226 (867)
Q Consensus 191 ~a~ArN~G~~~-A~Gd~llfLDaD~~v~p~wLe~Ll~ 226 (867)
.+-+|-...+. ..-|-+++||+|+.+-.+ |..|.+
T Consensus 85 ~~~~rl~i~~ll~~~drilyLD~D~lv~~d-l~~lf~ 120 (250)
T PF01501_consen 85 ATFARLFIPDLLPDYDRILYLDADTLVLGD-LDELFD 120 (250)
T ss_dssp GGGGGGGHHHHSTTSSEEEEE-TTEEESS--SHHHHC
T ss_pred HHHHHhhhHHHHhhcCeEEEEcCCeeeecC-hhhhhc
Confidence 33455566666 678999999999998543 344433
No 217
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=34.95 E-value=1.2e+02 Score=34.32 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=40.6
Q ss_pred cCchhHHhHhhhhcCCCEEEEEcCCcc-cCccchHHHHHHHHhcCCceeee
Q psy1765 189 EGLIRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVP 238 (867)
Q Consensus 189 ~G~a~ArN~G~~~A~Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~~~vv~p 238 (867)
.|...+.-.|++.+..++++++++|.- ++++.++.+++.+......++.|
T Consensus 78 ~G~~~si~~gl~~~~~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~ 128 (366)
T PRK14489 78 QGPLSGILAGLEHADSEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP 128 (366)
T ss_pred CChHHHHHHHHHhcCCCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE
Confidence 578888888998888899999999974 69999999999876555455544
No 218
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=34.52 E-value=67 Score=37.34 Aligned_cols=36 Identities=14% Similarity=0.144 Sum_probs=26.7
Q ss_pred eEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCC
Q psy1765 116 VHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSE 159 (867)
Q Consensus 116 ~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~St 159 (867)
++++..++|.|.+.|.|.|+..|.||++ +++|..+.
T Consensus 132 v~vv~~~~n~Gka~AlN~gl~~a~~d~i--------v~lDAD~~ 167 (444)
T PRK14583 132 LRVIHLAHNQGKAIALRMGAAAARSEYL--------VCIDGDAL 167 (444)
T ss_pred EEEEEeCCCCCHHHHHHHHHHhCCCCEE--------EEECCCCC
Confidence 4455566788999999999999988754 35665554
No 219
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=34.24 E-value=1.2e+02 Score=31.10 Aligned_cols=35 Identities=11% Similarity=0.146 Sum_probs=22.1
Q ss_pred EEeccchhh-HHHhhhhhhhhccccccccceeE-EEEEeCCCCC
Q psy1765 119 YRTSKREGL-IRARMFGAKYATGKNRIQSLLHE-IILVNDFSEY 160 (867)
Q Consensus 119 ~~~~~~~gi-~~a~~~g~~~a~g~~~~~~~l~E-IIVVDn~Std 160 (867)
+..++|.|. +.|+|.|+..|.+. ++ |+++|+.+..
T Consensus 61 i~~~~~~G~~~~a~n~g~~~a~~~-------~d~i~~lD~D~~~ 97 (236)
T cd06435 61 FHVEPLPGAKAGALNYALERTAPD-------AEIIAVIDADYQV 97 (236)
T ss_pred EEcCCCCCCchHHHHHHHHhcCCC-------CCEEEEEcCCCCc
Confidence 333445565 78999999988643 22 3456666653
No 220
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=33.69 E-value=68 Score=33.47 Aligned_cols=36 Identities=22% Similarity=0.194 Sum_probs=27.0
Q ss_pred EEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCC
Q psy1765 117 HLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEY 160 (867)
Q Consensus 117 ~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std 160 (867)
+++..++|.|...|+|.|+..|.|+++ +++|+....
T Consensus 87 ~~i~~~~~~g~~~a~n~gi~~a~~d~i--------~~lD~D~~~ 122 (251)
T cd06439 87 KLLRFPERRGKAAALNRALALATGEIV--------VFTDANALL 122 (251)
T ss_pred EEEEcCCCCChHHHHHHHHHHcCCCEE--------EEEccccCc
Confidence 344455678899999999999999764 467766654
No 221
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=33.58 E-value=1.3e+02 Score=34.77 Aligned_cols=64 Identities=13% Similarity=0.097 Sum_probs=43.5
Q ss_pred HHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc--CCCEEEEEcCCc-ccCccchHHHHHHHHh
Q psy1765 166 GEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA--TGKVLVFLDSHI-EVNTHWLEPLLVPIAE 230 (867)
Q Consensus 166 ~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A--~Gd~llfLDaD~-~v~p~wLe~Ll~~l~~ 230 (867)
+.+.+++... ...+.++......|.+.+.-.++... ..+.++++++|. .+++..++.+++.+..
T Consensus 60 ~~i~~~~~~~-~~~~~~~~~~~~~G~~~sl~~a~~~l~~~~~~~lv~~~D~P~i~~~~l~~l~~~~~~ 126 (446)
T PRK14353 60 EAVAAAAAKI-APDAEIFVQKERLGTAHAVLAAREALAGGYGDVLVLYGDTPLITAETLARLRERLAD 126 (446)
T ss_pred HHHHHHhhcc-CCCceEEEcCCCCCcHHHHHHHHHHHhccCCCEEEEeCCcccCCHHHHHHHHHhHhc
Confidence 3455555443 12455555556778888777777654 256788899998 6789999999986654
No 222
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=33.43 E-value=71 Score=33.32 Aligned_cols=22 Identities=14% Similarity=0.225 Sum_probs=18.8
Q ss_pred cchhhHHHhhhhhhhhcccccc
Q psy1765 123 KREGLIRARMFGAKYATGKNRI 144 (867)
Q Consensus 123 ~~~gi~~a~~~g~~~a~g~~~~ 144 (867)
+|.|.+.|+|.|+..|.|++++
T Consensus 68 ~~~G~~~a~n~g~~~a~gd~i~ 89 (241)
T cd06427 68 QPRTKPKACNYALAFARGEYVV 89 (241)
T ss_pred CCCchHHHHHHHHHhcCCCEEE
Confidence 4678999999999999998753
No 223
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=33.18 E-value=84 Score=32.17 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=47.9
Q ss_pred CEEEEEcCCCc-CchhHHhHhhhhcCCCEEEEEcCCccc-CccchHHHHHHHHhcCCce
Q psy1765 179 RVHLYRTSKRE-GLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPLLVPIAERTNTV 235 (867)
Q Consensus 179 ~vrii~~~~n~-G~a~ArN~G~~~A~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~~~v 235 (867)
.+.++.-.... |..++.-.|++++.+++++|+=.|+-+ +++.++.|...+.+.+..+
T Consensus 61 g~~vv~D~~~~~GPL~Gi~~al~~~~~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~~ 119 (192)
T COG0746 61 GLPVVPDELPGFGPLAGILAALRHFGTEWVLVLPCDMPFIPPELVERLLSAFKQTGAAI 119 (192)
T ss_pred CCceeecCCCCCCCHHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHhhcccCCcE
Confidence 46777666565 999999999999999999999999965 8899999999988766333
No 224
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=32.92 E-value=1.8e+02 Score=29.79 Aligned_cols=52 Identities=13% Similarity=0.072 Sum_probs=38.0
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhc-CCCEEEEEcCCcc-cCccchHHHHHHHHhcC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYA-TGKVLVFLDSHIE-VNTHWLEPLLVPIAERT 232 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A-~Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~ 232 (867)
.+.++.... +...+.-.|+... ..|+++++++|.- ++++.++.+++.+.+.+
T Consensus 67 ~~~~~~~~~--~~~~sl~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 120 (217)
T TIGR00453 67 VPKIVAGGD--TRQDSVRNGLKALKDAEWVLVHDAARPFVPKELLDRLLEALRKAG 120 (217)
T ss_pred cEEEeCCCc--hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 344544322 3456677777766 6799999999985 69999999999887653
No 225
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=32.26 E-value=1.7e+02 Score=33.89 Aligned_cols=51 Identities=12% Similarity=0.029 Sum_probs=39.7
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhc---CCCEEEEEcCCc-ccCccchHHHHHHHH
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYA---TGKVLVFLDSHI-EVNTHWLEPLLVPIA 229 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A---~Gd~llfLDaD~-~v~p~wLe~Ll~~l~ 229 (867)
.++++.++...|.+.+.-.++... ..+.++++++|. .+++..++.+++...
T Consensus 70 ~~~~v~~~~~~Gt~~al~~a~~~l~~~~~d~vlv~~gD~P~i~~~~i~~li~~~~ 124 (456)
T PRK14356 70 DARFVLQEQQLGTGHALQCAWPSLTAAGLDRVLVVNGDTPLVTTDTIDDFLKEAA 124 (456)
T ss_pred CceEEEcCCCCCcHHHHHHHHHHHhhcCCCcEEEEeCCcccCCHHHHHHHHHHHh
Confidence 577787776778887777776544 358999999998 578889999998765
No 226
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=32.22 E-value=1.7e+02 Score=29.90 Aligned_cols=52 Identities=13% Similarity=0.160 Sum_probs=39.7
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhc---CCCEEEEEcCCcc-cCccchHHHHHHHHhcC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYA---TGKVLVFLDSHIE-VNTHWLEPLLVPIAERT 232 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A---~Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~ 232 (867)
.+.++... .|...+...|++.. ..++++++++|.- +++..++.+++.+.+..
T Consensus 70 ~~~~~~~~--~~~~~si~~al~~~~~~~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (218)
T cd02516 70 VVKIVEGG--ATRQDSVLNGLKALPDADPDIVLIHDAARPFVSPELIDRLIDALKEYG 125 (218)
T ss_pred CeEEECCc--hHHHHHHHHHHHhcccCCCCEEEEccCcCCCCCHHHHHHHHHHHhhCC
Confidence 45555543 35567788888776 5789999999986 59999999999986554
No 227
>KOG3765|consensus
Probab=32.02 E-value=1.7e+02 Score=33.33 Aligned_cols=152 Identities=12% Similarity=0.035 Sum_probs=81.5
Q ss_pred cCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHh---c--CCceeeeEEeeecC-CCceecccccccc---c
Q psy1765 189 EGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE---R--TNTVTVPIIDIINA-DTFQYTSSALVRG---G 259 (867)
Q Consensus 189 ~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~---~--~~~vv~p~i~~i~~-~~~~~~~~~~~~g---~ 259 (867)
.-+.-.||.|-+.|.++|++..|.|..++.+..+.+...+.+ . ..+.|.|..+.... ..+......+... +
T Consensus 177 YP~Nl~RNvAr~ga~t~~~l~sD~dm~~S~gl~~~~~~~~~ql~~~~~~~vlvi~~FE~~~~~~~~P~~k~eL~~~~~~~ 256 (386)
T KOG3765|consen 177 YPFNLMRNVARKGANTDYMLMSDIDMVPSYGLADMLKKILNQLDDGKKKKVLVIPAFETDLPNALFPHNKDELLVLLCNG 256 (386)
T ss_pred CchHHHHHHHHhhcCCCcEEEEeeeeeeccchHHHHHHHHHHhhcccccEEEEeeehhcccccccccCCHHHHHHHHhcC
Confidence 345678999999999999999999999988876655444433 1 22455555543322 1221111111111 1
Q ss_pred cccccccccccCCcCcCCCC----------CCCCCccccc--ccccceEeEeHHHHHHhCCCCCCCCCCcccchHHHHHH
Q psy1765 260 FNWGLHFKWENLPKGTLNSS----------EDFIKPILSP--TMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRI 327 (867)
Q Consensus 260 f~~~l~~~~~~~~~~~~~~~----------~~~~~p~~~~--~~~G~~~airR~~f~~vGgfDe~~~~~G~ED~Dls~Rl 327 (867)
-.+.++.. ..+....... .....+..++ ..-.....+.+ +.-.||+.|...|..=.-..+-+
T Consensus 257 ~~~~Fh~~--~~~~~h~~~n~~~w~~~s~~s~~~~~~~v~~~~~~Ep~~vl~~----~~p~yd~ry~~~g~~~~s~~y~l 330 (386)
T KOG3765|consen 257 TARPFHHK--YFPICHEGTNLSEWVNHGNRSLEHTVYLVAYRNSWEPQVVLHR----EDPAYDERYFPLGHNKQSQVYTL 330 (386)
T ss_pred Ccccceec--cccccccCCCccceeecCCcccccchhhhhhccCCccEEEccC----CCcchhhhhCccccchHHHHHHH
Confidence 11111111 1111110000 0000000000 11112222233 33458999988887777777888
Q ss_pred HHcCCeEEEEcccEEEEEe
Q psy1765 328 WMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 328 ~~~G~~i~~~P~s~V~H~~ 346 (867)
-.++|...+.+.+...|..
T Consensus 331 c~~~Y~f~vl~~~f~vHk~ 349 (386)
T KOG3765|consen 331 CGAEYEFLVLSLAFTVHKG 349 (386)
T ss_pred HhcCCeeeecccceeeecC
Confidence 8999999999999999853
No 228
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=30.71 E-value=4.4e+02 Score=27.09 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=30.7
Q ss_pred CCCcCchhHHhHhhhhcC-CCEEEEEcCCcccCccchHHHHHHHH
Q psy1765 186 SKREGLIRARMFGAKYAT-GKVLVFLDSHIEVNTHWLEPLLVPIA 229 (867)
Q Consensus 186 ~~n~G~a~ArN~G~~~A~-Gd~llfLDaD~~v~p~wLe~Ll~~l~ 229 (867)
+...|.+.+.-.|..... .+.++++++|..+..+... ++..+.
T Consensus 79 ~~~~g~~~~l~~a~~~l~~~~~~lv~~~D~i~~~~~~~-~~~~~~ 122 (231)
T cd04183 79 GETLGAACTVLLAADLIDNDDPLLIFNCDQIVESDLLA-FLAAFR 122 (231)
T ss_pred CCCCcHHHHHHHHHhhcCCCCCEEEEecceeeccCHHH-HHHHhh
Confidence 357788888888877664 4677889999988877554 444443
No 229
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=30.69 E-value=3e+02 Score=31.34 Aligned_cols=49 Identities=8% Similarity=0.128 Sum_probs=35.1
Q ss_pred CchhHHhHhhhhcCCCEEEEEcCCcc-cCccchHHHHHHHHhcCCceeeeEE
Q psy1765 190 GLIRARMFGAKYATGKVLVFLDSHIE-VNTHWLEPLLVPIAERTNTVTVPII 240 (867)
Q Consensus 190 G~a~ArN~G~~~A~Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~~~vv~p~i 240 (867)
+...+.-.|++....|++++.|+|.- ++++.++.+++.+.+. ..+.|.+
T Consensus 82 ~r~~SV~~gL~~l~~d~VLVhdadrPfv~~e~I~~li~~~~~~--~a~i~~~ 131 (378)
T PRK09382 82 TRQESVRNALEALDSEYVLIHDAARPFVPKELIDRLIEALDKA--DCVLPAL 131 (378)
T ss_pred hHHHHHHHHHHhcCCCeEEEeeccccCCCHHHHHHHHHHhhcC--CeEEEEE
Confidence 34455666777666799999999964 5899999999987654 3444444
No 230
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=30.49 E-value=2.1e+02 Score=29.67 Aligned_cols=52 Identities=15% Similarity=0.168 Sum_probs=37.5
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhc-CCCEEEEEcCCccc-CccchHHHHHHHHhcC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYA-TGKVLVFLDSHIEV-NTHWLEPLLVPIAERT 232 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A-~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~ 232 (867)
+++++... .+...+.-.|+... ..++++++|+|.-+ +++.|+.+++.+.+..
T Consensus 74 ~~~~v~~g--~~r~~sv~~gl~~~~~~d~vli~~~d~P~i~~~~i~~li~~~~~~~ 127 (230)
T PRK13385 74 RVEVVKGG--TERQESVAAGLDRIGNEDVILVHDGARPFLTQDIIDRLLEGVAKYG 127 (230)
T ss_pred ceEEcCCC--chHHHHHHHHHHhccCCCeEEEccCCCCCCCHHHHHHHHHHHhhCC
Confidence 45666543 23456666677654 45789999999865 9999999999987654
No 231
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=30.27 E-value=2.1e+02 Score=30.43 Aligned_cols=55 Identities=15% Similarity=0.207 Sum_probs=41.1
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCcc--chHHHHHHHHhcCC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH--WLEPLLVPIAERTN 233 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~--wLe~Ll~~l~~~~~ 233 (867)
.+.++..+...|.+.|.-.++.....+-++++.+|..+... -+..+++.+.+...
T Consensus 94 ~i~~~~~~~~~Gt~~al~~~~~~i~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~ 150 (267)
T cd02541 94 NIHYVRQKEPLGLGHAVLCAKPFIGDEPFAVLLGDDLIDSKEPCLKQLIEAYEKTGA 150 (267)
T ss_pred eEEEEEcCCCCChHHHHHHHHHHhCCCceEEEECCeEEeCCchHHHHHHHHHHHhCC
Confidence 56677777778999999888887765667777888877543 58888887765443
No 232
>PF03360 Glyco_transf_43: Glycosyltransferase family 43; InterPro: IPR005027 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 43 GT43 from CAZY comprises enzymes with only one known activities; beta-glucuronyltransferase(2.4.1 from EC);.; GO: 0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity, 0016020 membrane; PDB: 2D0J_B 3CU0_A 1FGG_B 1KWS_B 1V84_B 1V83_B 1V82_A.
Probab=30.15 E-value=80 Score=32.75 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=36.5
Q ss_pred EEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCC-------CcCc---hhHHhHhhhhcC-------CCEEEEEcC
Q psy1765 150 EIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSK-------REGL---IRARMFGAKYAT-------GKVLVFLDS 212 (867)
Q Consensus 150 EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~-------n~G~---a~ArN~G~~~A~-------Gd~llfLDa 212 (867)
--|||+|+.+. .+.+..++++..- ..+.+..+. +... ...||.|++.-+ .-+|.|.|.
T Consensus 12 ~WIVVEd~~~~----~~~v~~lL~~sgl-~y~hL~~~~p~~~~~~~~~~~rg~~qRn~AL~~ir~~~~~~~~GVVyFaDD 86 (207)
T PF03360_consen 12 HWIVVEDSEET----TPLVARLLRRSGL-PYTHLNVKTPSNFKDPRWIKPRGVHQRNAALRWIRNNANHRLDGVVYFADD 86 (207)
T ss_dssp EEEEEESSSS------HHHHHHHHHHTS-EEEEEE----HHHH-------TSHHHHHHHHHHHHSTTTSSS-EEEEE--T
T ss_pred EEEEEeCCCCC----CHHHHHHHHHcCC-ceeEEecCCccccccccccccccHHHHHHHHHHHHhcccCCCCcEEEECCC
Confidence 46999999874 3446667666421 222222222 1111 347899986554 578889999
Q ss_pred CcccCccchHH
Q psy1765 213 HIEVNTHWLEP 223 (867)
Q Consensus 213 D~~v~p~wLe~ 223 (867)
|-..+-..++.
T Consensus 87 dNtYdl~LF~e 97 (207)
T PF03360_consen 87 DNTYDLRLFDE 97 (207)
T ss_dssp TSEE-HHHHHH
T ss_pred CCeeeHHHHHH
Confidence 98877655554
No 233
>cd00505 Glyco_transf_8 Members of glycosyltransferase family 8 (GT-8) are involved in lipopolysaccharide biosynthesis and glycogen synthesis. Members of this family are involved in lipopolysaccharide biosynthesis and glycogen synthesis. GT-8 comprises enzymes with a number of known activities: lipopolysaccharide galactosyltransferase, lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase, and N-acetylglucosaminyltransferase. GT-8 enzymes contains a conserved DXD motif which is essential in the coordination of a catalytic divalent cation, most commonly Mn2+.
Probab=29.82 E-value=2.8e+02 Score=29.23 Aligned_cols=39 Identities=10% Similarity=0.089 Sum_probs=26.1
Q ss_pred EEEEeCC-CChHHHHHHHHHHHhcCccccccEEEEEECCCCC
Q psy1765 56 VIICFYN-EHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEY 96 (867)
Q Consensus 56 VIIp~yN-e~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d 96 (867)
|++.+-+ .-...+.-++.||+..+.... .+.|++|+-++
T Consensus 3 i~~~a~d~~y~~~~~v~i~Sl~~~~~~~~--~~~il~~~is~ 42 (246)
T cd00505 3 IVIVATGDEYLRGAIVLMKSVLRHRTKPL--RFHVLTNPLSD 42 (246)
T ss_pred EEEEecCcchhHHHHHHHHHHHHhCCCCe--EEEEEEccccH
Confidence 4444433 234588999999999876555 78887776443
No 234
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=29.70 E-value=1.4e+02 Score=32.22 Aligned_cols=35 Identities=23% Similarity=0.213 Sum_probs=23.0
Q ss_pred EEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEE
Q psy1765 55 SVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILV 90 (867)
Q Consensus 55 SVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlV 90 (867)
-|||++.+.....+..+|..|.. .--.+..||+.-
T Consensus 3 GIVi~~g~~~~~~a~~lI~~LR~-~g~~LPIEI~~~ 37 (271)
T PF11051_consen 3 GIVITAGDKYLWLALRLIRVLRR-LGNTLPIEIIYP 37 (271)
T ss_pred EEEEEecCccHHHHHHHHHHHHH-hCCCCCEEEEeC
Confidence 38999988655455666666655 334455588876
No 235
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=29.65 E-value=87 Score=34.51 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=11.3
Q ss_pred ceeEEEEEeCCCC
Q psy1765 147 LLHEIILVNDFSE 159 (867)
Q Consensus 147 ~l~EIIVVDn~St 159 (867)
..+|||||||||+
T Consensus 61 ~~~EIIVVDDgSt 73 (306)
T PRK13915 61 LVDELIVIDSGST 73 (306)
T ss_pred CCcEEEEEeCCCc
Confidence 3479999999998
No 236
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=29.60 E-value=1.9e+02 Score=31.27 Aligned_cols=59 Identities=15% Similarity=0.198 Sum_probs=45.6
Q ss_pred CCEEEEEcCCCcCchhHHhHhhhhcCCC-EEEEEcCCcccC-ccchHHHHHHHHhcCCcee
Q psy1765 178 GRVHLYRTSKREGLIRARMFGAKYATGK-VLVFLDSHIEVN-THWLEPLLVPIAERTNTVT 236 (867)
Q Consensus 178 ~~vrii~~~~n~G~a~ArN~G~~~A~Gd-~llfLDaD~~v~-p~wLe~Ll~~l~~~~~~vv 236 (867)
.++.++|+.+..|+++|...|=.....| |.+.|-+|...+ +..+..|++...+-...++
T Consensus 97 ~~i~~vRQ~e~~GLGhAVl~A~~~vg~EpFaVlL~Ddl~~~~~~~l~qmi~~ye~~g~svi 157 (291)
T COG1210 97 VTISFVRQKEPLGLGHAVLCAKPFVGDEPFAVLLPDDLVDSEKPCLKQMIELYEETGGSVI 157 (291)
T ss_pred ceEEEEecCCCCcchhHHHhhhhhcCCCceEEEeCCeeecCCchHHHHHHHHHHHhCCcEE
Confidence 5789999999999999999998888777 555555554443 6788999998887655444
No 237
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=29.23 E-value=2.7e+02 Score=28.54 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=47.8
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcC-----CCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHH
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLN-----NGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEP 223 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~-----~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~ 223 (867)
.|||||=+.. ..+.+++++.... ...+.++...+..|.+.+.-.+......+ ++++.+|... +.-+..
T Consensus 47 ~~iivv~~~~-----~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~gt~~al~~~~~~i~~d-~lv~~~D~i~-~~~l~~ 119 (214)
T cd04198 47 EDVIVVVPEE-----EQAEISTYLRSFPLNLKQKLDEVTIVLDEDMGTADSLRHIRKKIKKD-FLVLSCDLIT-DLPLIE 119 (214)
T ss_pred CeEEEEECHH-----HHHHHHHHHHhcccccCcceeEEEecCCCCcChHHHHHHHHhhcCCC-EEEEeCcccc-ccCHHH
Confidence 4666665321 1234555554321 11234444556789999988887776555 6777888654 445677
Q ss_pred HHHHHHhcCCcee
Q psy1765 224 LLVPIAERTNTVT 236 (867)
Q Consensus 224 Ll~~l~~~~~~vv 236 (867)
+++.+.+.+..++
T Consensus 120 ~l~~h~~~~~~~t 132 (214)
T cd04198 120 LVDLHRSHDASLT 132 (214)
T ss_pred HHHHHhccCCcEE
Confidence 8887766554433
No 238
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=28.83 E-value=2.2e+02 Score=28.69 Aligned_cols=73 Identities=14% Similarity=0.278 Sum_probs=58.6
Q ss_pred cceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCccc-CccchHHH
Q psy1765 146 SLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEV-NTHWLEPL 224 (867)
Q Consensus 146 ~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v-~p~wLe~L 224 (867)
++.+||+|+=+-+++ .++.++... .+.+|+.+ ..|+..-.|.+++.... -++.+-+|..+ .|..|..+
T Consensus 39 ~~~d~i~v~isp~tp------~t~~~~~~~---gv~vi~tp-G~GYv~Dl~~al~~l~~-P~lvvsaDLp~l~~~~i~~v 107 (177)
T COG2266 39 KIVDEIIVAISPHTP------KTKEYLESV---GVKVIETP-GEGYVEDLRFALESLGT-PILVVSADLPFLNPSIIDSV 107 (177)
T ss_pred hhcCcEEEEeCCCCH------hHHHHHHhc---CceEEEcC-CCChHHHHHHHHHhcCC-ceEEEecccccCCHHHHHHH
Confidence 356799998887775 356666554 59999999 88999999999998766 66777888865 89999999
Q ss_pred HHHHH
Q psy1765 225 LVPIA 229 (867)
Q Consensus 225 l~~l~ 229 (867)
++.+.
T Consensus 108 i~~~~ 112 (177)
T COG2266 108 IDAAA 112 (177)
T ss_pred HHHHh
Confidence 99887
No 239
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=28.44 E-value=2.9e+02 Score=29.11 Aligned_cols=56 Identities=11% Similarity=0.124 Sum_probs=39.3
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCcc--chHHHHHHHHhcCCc
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTH--WLEPLLVPIAERTNT 234 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~--wLe~Ll~~l~~~~~~ 234 (867)
.+.++......|.+.|.-.+......+-++++.+|..+... -+..+++.+.+.+..
T Consensus 94 ~i~~~~~~~~~G~~~al~~~~~~~~~~~~lv~~gD~~~~~~~~~~~~l~~~~~~~~~~ 151 (260)
T TIGR01099 94 TIFYVRQKEQKGLGHAVLCAEPFVGDEPFAVILGDDIVVSEEPALKQMIDLYEKYGCS 151 (260)
T ss_pred eEEEEecCCCCCHHHHHHHHHHhhCCCCEEEEeccceecCCcHHHHHHHHHHHHhCCC
Confidence 35556666678999988888776644556777777776543 688888887665544
No 240
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=28.30 E-value=1.2e+02 Score=32.68 Aligned_cols=62 Identities=21% Similarity=0.219 Sum_probs=38.9
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECCCCCCCCchhhHHHHHhhcCCCceEEEEeccchhhHHH
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRA 130 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~S~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~a 130 (867)
.+.+.|||.-..... ...+.|..+.....- ..+|.+....+ .-|.++|
T Consensus 32 ~~~~eiIvvd~~s~~-~~~~~l~~~~~~~~~----~~~i~~~~~~~---------------------------~f~~a~a 79 (281)
T PF10111_consen 32 DPDFEIIVVDDGSSD-EFDEELKKLCEKNGF----IRYIRHEDNGE---------------------------PFSRAKA 79 (281)
T ss_pred CCCEEEEEEECCCch-hHHHHHHHHHhccCc----eEEEEcCCCCC---------------------------CcCHHHH
Confidence 467899998888665 555666666654321 10121111111 2378999
Q ss_pred hhhhhhhhcccccc
Q psy1765 131 RMFGAKYATGKNRI 144 (867)
Q Consensus 131 ~~~g~~~a~g~~~~ 144 (867)
||.|+..|++++++
T Consensus 80 rN~g~~~A~~d~l~ 93 (281)
T PF10111_consen 80 RNIGAKYARGDYLI 93 (281)
T ss_pred HHHHHHHcCCCEEE
Confidence 99999999998764
No 241
>PF07507 WavE: WavE lipopolysaccharide synthesis; InterPro: IPR011122 These proteins are encoded by putative wav gene clusters, which are responsible for the synthesis of the core oligosaccharide (OS) region of Vibrio cholerae lipopolysaccharide [].
Probab=28.26 E-value=3e+02 Score=30.53 Aligned_cols=36 Identities=17% Similarity=0.074 Sum_probs=26.2
Q ss_pred hHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHH
Q psy1765 193 RARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPI 228 (867)
Q Consensus 193 ~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l 228 (867)
.+-..|+++|+.+|++=|=+|..+..+-+-.+...+
T Consensus 85 ~St~aGL~~~~~~Ya~KlRtD~~l~~~~~l~~~~~~ 120 (311)
T PF07507_consen 85 VSTLAGLKAAKTKYAMKLRTDNRLTGNNFLDLYEKY 120 (311)
T ss_pred HHHHHHHHHhCCceEEEEcccccccchHHHHHHHHh
Confidence 445689999999999999999988544443333333
No 242
>PF05212 DUF707: Protein of unknown function (DUF707); InterPro: IPR007877 This family consists of uncharacterised proteins from Arabidopsis thaliana.
Probab=28.21 E-value=8.2e+02 Score=26.77 Aligned_cols=137 Identities=11% Similarity=0.111 Sum_probs=74.8
Q ss_pred hcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCcCCCCC
Q psy1765 201 YATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSE 280 (867)
Q Consensus 201 ~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~~~~~~ 280 (867)
.+..|||.+.|.|..++.--++++++.+.+..-.+.-|.++.-.. .+.+.... ..... .++. .. .... .-..
T Consensus 114 v~~YdYiflwDeDL~vd~f~~~ry~~Ivk~~gLeISQPALd~~~~-~~~~~iT~-R~~~~--~vhr--~~-~~~~-~~~~ 185 (294)
T PF05212_consen 114 VAPYDYIFLWDEDLGVDHFDINRYFEIVKKEGLEISQPALDPDSS-EIHHPITK-RRPDS--EVHR--KT-RGGP-RCCD 185 (294)
T ss_pred hccceeEEecCCccCcCcCCHHHHHHHHHHhCCcccCcccCCCCc-eeeeeEEe-ecCCc--eeEe--cc-CCCC-CcCC
Confidence 467999999999999999999999999988877666665532111 01111000 00000 0110 00 0000 0001
Q ss_pred CCCCcccccccccceEeEeHHHHHHhCCCC-CCC-CCCcccchHHHHHHHHcCCeEEEEcccEEEEEe
Q psy1765 281 DFIKPILSPTMAGGLFAIDRQYFDSLGQYD-AGL-EIWGGENLELSFRIWMCGGSLAMIPCSRIGHVF 346 (867)
Q Consensus 281 ~~~~p~~~~~~~G~~~airR~~f~~vGgfD-e~~-~~~G~ED~Dls~Rl~~~G~~i~~~P~s~V~H~~ 346 (867)
+...|-.+..+-...=.++|+++.-+=.+= .++ ..| |=|+-+..-+-....+|.++-...|.|..
T Consensus 186 ~~~~ppct~fVEiMAPVFSr~Awrcvw~miqNDLvhGW-GLDf~~~~c~~~~~~kiGVVDs~~VvH~g 252 (294)
T PF05212_consen 186 DSTGPPCTGFVEIMAPVFSRAAWRCVWHMIQNDLVHGW-GLDFKWGYCAGDRHKKIGVVDSQYVVHTG 252 (294)
T ss_pred CCCCCCcceEEEEecceechHHHHHHHhcccCCCcccc-chhhhHHHHhccccccEEEEeeEEEEEcC
Confidence 111121122221112246788887765432 222 456 56666766665567899999988899975
No 243
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=28.13 E-value=2.5e+02 Score=28.29 Aligned_cols=75 Identities=8% Similarity=0.080 Sum_probs=50.0
Q ss_pred eEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc-CCCEEEEEcCCcc-cCccchHHHHH
Q psy1765 149 HEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA-TGKVLVFLDSHIE-VNTHWLEPLLV 226 (867)
Q Consensus 149 ~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A-~Gd~llfLDaD~~-v~p~wLe~Ll~ 226 (867)
.+|+||-+..+ +.+..++... ...++. ....|.+.+...|++.. ..+.++++-+|.. +.+..++.+++
T Consensus 43 ~~I~Vv~~~~~------~~~~~~l~~~---~~~~~~-~~g~G~~~~l~~al~~~~~~~~~lv~~~D~P~i~~~~i~~li~ 112 (183)
T TIGR00454 43 NNIIIATSPHT------PKTEEYINSA---YKDYKN-ASGKGYIEDLNECIGELYFSEPFLVVSSDLINLRSKIIDSIVD 112 (183)
T ss_pred CEEEEEeCCCH------HHHHHHHhhc---CcEEEe-cCCCCHHHHHHHHhhcccCCCCEEEEeCCcCcCCHHHHHHHHH
Confidence 46666643222 3455555432 222333 45788888889998853 3577899999986 58999999999
Q ss_pred HHHhcCC
Q psy1765 227 PIAERTN 233 (867)
Q Consensus 227 ~l~~~~~ 233 (867)
.+...+.
T Consensus 113 ~~~~~~~ 119 (183)
T TIGR00454 113 YYYCIKA 119 (183)
T ss_pred HHHhcCC
Confidence 8866543
No 244
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=27.15 E-value=23 Score=21.50 Aligned_cols=11 Identities=45% Similarity=1.253 Sum_probs=8.6
Q ss_pred hhhcccccccc
Q psy1765 493 RARLGCKSFKW 503 (867)
Q Consensus 493 R~~l~CksF~W 503 (867)
+.+-.||+|-|
T Consensus 2 ~~k~~CknffW 12 (18)
T PF03002_consen 2 ERKAGCKNFFW 12 (18)
T ss_pred cccccccceee
Confidence 35678999988
No 245
>PF01697 Glyco_transf_92: Glycosyltransferase family 92; InterPro: IPR008166 This entry represents a region approximately 300 residues long that is of unknown function. The aligned region contains several conserved cysteine residues and several charged residues that may be catalytic residues.
Probab=26.56 E-value=1.4e+02 Score=31.98 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=50.4
Q ss_pred EEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcC-------------------CCcCchhHHhHhhhhc--CCCEEEE
Q psy1765 151 IILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTS-------------------KREGLIRARMFGAKYA--TGKVLVF 209 (867)
Q Consensus 151 IIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~-------------------~n~G~a~ArN~G~~~A--~Gd~llf 209 (867)
+.+=|+++++ .+.+.|..|.+. ..|.++.-+ ...|-..|.|-.+-.. ..+|++|
T Consensus 35 ~~~Y~~~~~~--~~~~vL~~Y~~~---g~v~~~~w~~~~~~~~~~~~~~~~~~~~~~~~q~~a~~DCl~r~~~~~~~v~f 109 (285)
T PF01697_consen 35 FYFYDNSSSP--SVRKVLKEYERS---GYVEVIPWPLRPKFPDFPSPFPDPNSSVERRGQIAAYNDCLLRYRYRAKWVAF 109 (285)
T ss_pred EEEEEccCCH--HHHHhHHHHhhc---CeEEEEEcccccccCCcccchhhhhhHHHHHHHHHHHHHHHHHhhhhceEEEE
Confidence 4455666776 557778877765 367776664 1134455666666555 5688999
Q ss_pred EcCCcccCcc----chHHHHHHHHhcCC
Q psy1765 210 LDSHIEVNTH----WLEPLLVPIAERTN 233 (867)
Q Consensus 210 LDaD~~v~p~----wLe~Ll~~l~~~~~ 233 (867)
+|-|-.+-|. +.+.+...+++.+.
T Consensus 110 ~DiDE~lvP~~~~~~~~~~~~~l~~~~~ 137 (285)
T PF01697_consen 110 IDIDEFLVPTNAPTYPEEFEDLLREFPN 137 (285)
T ss_pred eccccEEEeccccchhhHHHHHHhhccc
Confidence 9999887443 47777777766543
No 246
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=26.31 E-value=1.1e+02 Score=31.32 Aligned_cols=31 Identities=19% Similarity=0.165 Sum_probs=24.5
Q ss_pred ccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCC
Q psy1765 122 SKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEY 160 (867)
Q Consensus 122 ~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std 160 (867)
++|.|.+.|.|.|+..|.|+++ +++|+....
T Consensus 60 ~~~~g~~~a~n~g~~~a~~d~v--------~~lD~D~~~ 90 (235)
T cd06434 60 VPHPGKRRALAEGIRHVTTDIV--------VLLDSDTVW 90 (235)
T ss_pred cCCCChHHHHHHHHHHhCCCEE--------EEECCCcee
Confidence 4577899999999999988765 477777754
No 247
>PLN02899 alpha-galactosidase
Probab=25.23 E-value=66 Score=38.60 Aligned_cols=61 Identities=16% Similarity=0.303 Sum_probs=40.4
Q ss_pred CCCceEeecCCCC--CC--CceEEecCCCCCCCccEEEccCCcEEe-ccCceeeeCCC-------CcEEEecCC
Q psy1765 684 GTDLCLTSKVDKT--KG--SPLVLKKCDELSKTQRWSKTDKSELVL-AELLCLDAGAT-------KPKLTKCHE 745 (867)
Q Consensus 684 ~sg~CLd~~~~~~--~g--~~v~l~~C~~~~~~Q~W~~~~~~~~~~-~s~~CLD~~g~-------~v~~~~C~~ 745 (867)
...+|||+..... .+ ..-...+|.. ..+|.|+++..+.+.. .+++|-.|... .|+.|--.+
T Consensus 485 ~~~~c~~~~~~~~~~~~~~~~~~fs~c~~-~~~q~w~l~~~g~l~~~~sglca~v~~~~~~~~~~~~r~w~a~g 557 (633)
T PLN02899 485 GGELCLDASPKQKRTSKDFRSGSFSPCRW-DANQMWELNNNGTLISSYSGLCATVNSVVAEVATGGVRSWIATG 557 (633)
T ss_pred ccChhhccCCCCCcCHhHhhccccCCCCC-ChhhceeeCCCCCEecCccccceEeeccccccccCceeEEEEcC
Confidence 4469999833211 11 1233679977 8899999999888764 48999998621 345555554
No 248
>PF05045 RgpF: Rhamnan synthesis protein F; InterPro: IPR007739 This family consists of a group of proteins which are related to the Streptococcal rhamnose-glucose polysaccharide assembly protein (RgpF). Rhamnan backbones are found in several O-polysaccharides found in phytopathogenic bacteria and are regarded as pathogenic factors [].
Probab=24.48 E-value=6e+02 Score=30.18 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=23.5
Q ss_pred CCcEEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEE
Q psy1765 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILV 90 (867)
Q Consensus 51 ~P~vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlV 90 (867)
.++|.|++=+|-. +.+.+.++.+.+ .+..+ +++|-
T Consensus 264 ~~kiav~lHv~Y~--DLl~E~l~~l~~-~p~~~--Dl~IT 298 (498)
T PF05045_consen 264 KKKIAVHLHVFYP--DLLEEILDYLAN-IPFPY--DLFIT 298 (498)
T ss_pred CCcEEEEEEEEcH--hhHHHHHHHHHh-CCCCe--EEEEE
Confidence 3578888888883 257777776554 44455 77774
No 249
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=23.58 E-value=3.4e+02 Score=33.17 Aligned_cols=120 Identities=15% Similarity=0.200 Sum_probs=62.3
Q ss_pred hHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHhcCCceeeeEEeeecCCCceeccccccccccccccccccccCCcCc
Q psy1765 196 MFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGT 275 (867)
Q Consensus 196 N~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~~~~g~f~~~l~~~~~~~~~~~ 275 (867)
-.+....+.+||+..|+|+.+..+-|-..|+.... ......+.+.. +. .+ .+.. .-+|. ++..+
T Consensus 468 ~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~-~~~Ly~G~v~~---~~-----~P-iRd~-----~sKWY-Vs~~e 531 (636)
T PLN03133 468 IFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNV-SHGLLYGLINS---DS-----QP-HRNP-----DSKWY-ISPEE 531 (636)
T ss_pred HHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCC-CCceEEEEecc---CC-----Cc-ccCC-----CCCCC-CCHHH
Confidence 34444557899999999999987655554432221 11232222210 00 00 0000 01121 11111
Q ss_pred CCCCCCCCCcccccccccceEeEeHHHHHHhCCC--CCCCCCCcccchHHHHHHHH---cCCeEEEE
Q psy1765 276 LNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQY--DAGLEIWGGENLELSFRIWM---CGGSLAMI 337 (867)
Q Consensus 276 ~~~~~~~~~p~~~~~~~G~~~airR~~f~~vGgf--De~~~~~G~ED~Dls~Rl~~---~G~~i~~~ 337 (867)
.. ....-|++.|+.+++++++...+--- ...+..+..||+-+..=+.+ .|..+.+.
T Consensus 532 yp------~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~ 592 (636)
T PLN03133 532 WP------EETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYE 592 (636)
T ss_pred CC------CCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceee
Confidence 11 11223688899999999999987321 12344455899998876543 45554433
No 250
>cd06430 GT8_like_2 GT8_like_2 represents a subfamily of GT8 with unknown function. A subfamily of glycosyltransferase family 8 with unknown function: Glycosyltransferase family 8 comprises enzymes with a number of known activities; lipopolysaccharide galactosyltransferase lipopolysaccharide glucosyltransferase 1, glycogenin glucosyltransferase and inositol 1-alpha-galactosyltransferase. It is classified as a retaining glycosyltransferase, based on the relative anomeric stereochemistry of the substrate and product in the reaction catalyzed.
Probab=23.57 E-value=6.5e+02 Score=27.82 Aligned_cols=36 Identities=8% Similarity=0.120 Sum_probs=24.8
Q ss_pred EEEEEEeCCCChHHHHHHHHHHHhcCccccccEEEEEECC
Q psy1765 54 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDF 93 (867)
Q Consensus 54 vSVIIp~yNe~~~~l~~~l~Svl~qt~~~~~~EiIlVDd~ 93 (867)
+.||++-.+ ...+..+|.|++-.+...+ .+-|+.|.
T Consensus 3 ~~vv~~g~~--~~~~~~~lkSil~~n~~~l--~Fhi~~d~ 38 (304)
T cd06430 3 LAVVACGER--LEETLTMLKSAIVFSQKPL--RFHIFAED 38 (304)
T ss_pred EEEEEcCCc--HHHHHHHHHHHHHhCCCCE--EEEEEECC
Confidence 566666666 4588999999977664444 66555554
No 251
>PF09886 DUF2113: Uncharacterized protein conserved in archaea (DUF2113); InterPro: IPR016762 There is currently no experimental data for members of this group or their homologues. Based on distant sequence similarity, they may be tentatively predicted to be nucleic acid-binding proteins, they are also likely to be linked to methanogenesis or a process closely connected to it.
Probab=23.26 E-value=1.7e+02 Score=29.84 Aligned_cols=61 Identities=23% Similarity=0.320 Sum_probs=46.7
Q ss_pred EEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcCCCEEEEEcCCcccCccchHHHHHHHHh
Q psy1765 152 ILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAE 230 (867)
Q Consensus 152 IVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~Gd~llfLDaD~~v~p~wLe~Ll~~l~~ 230 (867)
+||+|-+. .+...+-+++.+..+..+|+.++. ..|+-++|+=++..+.+.|++...+.+.+
T Consensus 124 lvV~Dp~~---~l~~~v~da~~RI~PEGFRVr~~~---------------~~~~~f~~vASE~~i~~ewi~~a~e~~~e 184 (188)
T PF09886_consen 124 LVVYDPSE---DLKKKVYDAMFRIAPEGFRVRRHY---------------YEGNSFAFVASEETIKDEWIEEAKEMIEE 184 (188)
T ss_pred cEEECcHH---HHHHHHHHHHHHhCCCccEEeecc---------------ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67777776 466777777766656778887754 35889999999999999999877776653
No 252
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=22.98 E-value=4e+02 Score=27.44 Aligned_cols=43 Identities=9% Similarity=0.064 Sum_probs=33.9
Q ss_pred CchhHHhHhhhhc-CCCEEEEEcCCcc-cCccchHHHHHHHHhcC
Q psy1765 190 GLIRARMFGAKYA-TGKVLVFLDSHIE-VNTHWLEPLLVPIAERT 232 (867)
Q Consensus 190 G~a~ArN~G~~~A-~Gd~llfLDaD~~-v~p~wLe~Ll~~l~~~~ 232 (867)
+.+.+.-.|+... ..++++++|+|.- ++++.++.+++.+.+..
T Consensus 81 ~~~~sv~~~l~~~~~~d~vlv~~~D~P~i~~~~i~~li~~~~~~~ 125 (227)
T PRK00155 81 ERQDSVLNGLQALPDDDWVLVHDAARPFLTPDDIDRLIEAAEETG 125 (227)
T ss_pred hHHHHHHHHHHhCCCCCEEEEccCccCCCCHHHHHHHHHHHhhCC
Confidence 4566666777665 5789999999986 59999999999887654
No 253
>PF09244 DUF1964: Domain of unknown function (DUF1964); InterPro: IPR015325 This domain is C-terminal to the catalytic sucrose phosphorylase beta/alpha barrel domain. It adopts a beta-sandwich fold, with Greek-key topology and is functionally uncharacterised []. ; PDB: 1R7A_B 2GDU_A 2GDV_A.
Probab=22.54 E-value=31 Score=28.09 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=12.0
Q ss_pred HhcCCCCCccCCCCCCCCccccccccccc
Q psy1765 829 SKMGWKAGQTLGKDEANSAALIEPELGLY 857 (867)
Q Consensus 829 ~~~g~~~g~~lg~~~~~~~~~~~p~~~~~ 857 (867)
+.+=|.||.|||+.+ +.||..+-
T Consensus 27 atLtFePg~Glg~~n------~~pVatl~ 49 (68)
T PF09244_consen 27 ATLTFEPGRGLGVDN------TTPVATLA 49 (68)
T ss_dssp EEEEE-GGGC-STT--------S--EEEE
T ss_pred EEEEEccCcccCccC------CcceeEEE
Confidence 345588999999988 55665543
No 254
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=22.54 E-value=1.3e+02 Score=30.40 Aligned_cols=29 Identities=17% Similarity=-0.001 Sum_probs=22.6
Q ss_pred cchhhHHHhhhhhhhhccccccccceeEEEEEeCCCC
Q psy1765 123 KREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSE 159 (867)
Q Consensus 123 ~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~St 159 (867)
.|.|.+.|.|.|+..+.|++++ ++|+...
T Consensus 66 ~~~g~~~a~n~g~~~~~~d~i~--------~~D~D~~ 94 (229)
T cd04192 66 SISGKKNALTTAIKAAKGDWIV--------TTDADCV 94 (229)
T ss_pred ccchhHHHHHHHHHHhcCCEEE--------EECCCcc
Confidence 4678999999999999987653 6665554
No 255
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=22.49 E-value=1.7e+02 Score=30.84 Aligned_cols=54 Identities=9% Similarity=-0.036 Sum_probs=38.6
Q ss_pred CEEEEEcCCCcCchhHHhHhhhhcCC-CEEEEEcCCcccCccchHHHHHHHHhcCC
Q psy1765 179 RVHLYRTSKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWLEPLLVPIAERTN 233 (867)
Q Consensus 179 ~vrii~~~~n~G~a~ArN~G~~~A~G-d~llfLDaD~~v~p~wLe~Ll~~l~~~~~ 233 (867)
.+.++......|.++|.-.+.....+ +.++++++|...+.+. ..+++.......
T Consensus 92 ~~~~~~~~~~~~t~~al~~a~~~~~~~~~~lv~~gD~i~~~dl-~~ll~~h~~~~~ 146 (253)
T cd02524 92 KVTLVDTGLNTMTGGRLKRVRRYLGDDETFMLTYGDGVSDVNI-NALIEFHRSHGK 146 (253)
T ss_pred ceeecccCcccccHHHHHHHHHhcCCCCeEEEEcCCEEECCCH-HHHHHHHHHcCC
Confidence 34444444456778887777777655 8899999999888776 888886655443
No 256
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=22.44 E-value=2.9e+02 Score=27.34 Aligned_cols=54 Identities=15% Similarity=0.197 Sum_probs=37.3
Q ss_pred CEEEEEcC-CCcCchhHHhHhhhhc---CCCEEEEEcCCccc-CccchHHHHHHHHhcC
Q psy1765 179 RVHLYRTS-KREGLIRARMFGAKYA---TGKVLVFLDSHIEV-NTHWLEPLLVPIAERT 232 (867)
Q Consensus 179 ~vrii~~~-~n~G~a~ArN~G~~~A---~Gd~llfLDaD~~v-~p~wLe~Ll~~l~~~~ 232 (867)
.++++... ...|...+.-.|+..+ +.++++++=+|.-. +++.++.|++.+....
T Consensus 46 ~~~~i~d~~~g~gpl~~~~~gl~~~~~~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~~ 104 (178)
T PRK00576 46 PAPVLRDELRGLGPLPATGRGLRAAAEAGARLAFVCAVDMPYLTVELIDDLARPAAQTD 104 (178)
T ss_pred CCCEeccCCCCCCcHHHHHHHHHHHHhcCCCEEEEEeCCCCCCCHHHHHHHHHHhhcCC
Confidence 34555432 2456666666566544 57999999999864 8999999998765444
No 257
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=20.97 E-value=1.1e+02 Score=31.85 Aligned_cols=22 Identities=23% Similarity=0.213 Sum_probs=19.1
Q ss_pred cchhhHHHhhhhhhhhcccccc
Q psy1765 123 KREGLIRARMFGAKYATGKNRI 144 (867)
Q Consensus 123 ~~~gi~~a~~~g~~~a~g~~~~ 144 (867)
++.|.+.|+|.|+..|.|++++
T Consensus 55 ~~~g~~~~~n~~~~~a~~d~vl 76 (229)
T cd02511 55 WWDGFGAQRNFALELATNDWVL 76 (229)
T ss_pred CCCChHHHHHHHHHhCCCCEEE
Confidence 6789999999999999998553
No 258
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=20.89 E-value=1.5e+02 Score=32.36 Aligned_cols=56 Identities=21% Similarity=0.184 Sum_probs=35.3
Q ss_pred ceEEEEeccchhhHHHhhhhhhhhccccccccceeEEEEEeCCCCCCcCchHHHHHHHhhc
Q psy1765 115 RVHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGL 175 (867)
Q Consensus 115 ~~~~~~~~~~~gi~~a~~~g~~~a~g~~~~~~~l~EIIVVDn~Std~~~~~~~l~~~~~~~ 175 (867)
.++++++.+|.|.+++-|.|+++|.++.-. -|+++||..--+....+.+-+.++..
T Consensus 57 ~v~~i~~~~NlG~agg~n~g~~~a~~~~~~-----~~l~LN~D~~~~~~~l~~ll~~~~~~ 112 (305)
T COG1216 57 NVRLIENGENLGFAGGFNRGIKYALAKGDD-----YVLLLNPDTVVEPDLLEELLKAAEED 112 (305)
T ss_pred cEEEEEcCCCccchhhhhHHHHHHhcCCCc-----EEEEEcCCeeeChhHHHHHHHHHHhC
Confidence 467788889999999999999999876332 34555554322112333444444443
No 259
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=20.83 E-value=1.7e+02 Score=29.73 Aligned_cols=18 Identities=11% Similarity=-0.195 Sum_probs=14.1
Q ss_pred hHHHhhhhhhhhcccccc
Q psy1765 127 LIRARMFGAKYATGKNRI 144 (867)
Q Consensus 127 i~~a~~~g~~~a~g~~~~ 144 (867)
-+.+.|.|++.|.||+++
T Consensus 72 ~~~~~n~~~~~a~~d~i~ 89 (234)
T cd06421 72 KAGNLNNALAHTTGDFVA 89 (234)
T ss_pred cHHHHHHHHHhCCCCEEE
Confidence 356789999999888664
No 260
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=20.75 E-value=2.6e+02 Score=27.84 Aligned_cols=37 Identities=14% Similarity=-0.076 Sum_probs=23.8
Q ss_pred cchhhHHHhhhhhhhhccccccccce--eEEE-EEeCCCC
Q psy1765 123 KREGLIRARMFGAKYATGKNRIQSLL--HEII-LVNDFSE 159 (867)
Q Consensus 123 ~~~gi~~a~~~g~~~a~g~~~~~~~l--~EII-VVDn~St 159 (867)
+|.|.+.|.|.|++.+.++......- .|+| ++|..+.
T Consensus 62 ~~~Gk~~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~ 101 (191)
T cd06436 62 ARTGKGDALNAAYDQIRQILIEEGADPERVIIAVIDADGR 101 (191)
T ss_pred CCCCHHHHHHHHHHHHhhhccccccCCCccEEEEECCCCC
Confidence 46799999999999988754332222 2444 4555444
No 261
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=20.74 E-value=6.1e+02 Score=29.32 Aligned_cols=69 Identities=13% Similarity=0.075 Sum_probs=50.2
Q ss_pred hHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc--CCC-EEEEEcCCccc-CccchHHHHHHHHhcCCce
Q psy1765 165 HGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA--TGK-VLVFLDSHIEV-NTHWLEPLLVPIAERTNTV 235 (867)
Q Consensus 165 ~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A--~Gd-~llfLDaD~~v-~p~wLe~Ll~~l~~~~~~v 235 (867)
.+.+.+.+.+. +.+.++.+++..|-++|.-.+...- ..+ .++.|..|+-+ .++-|+.|++........+
T Consensus 56 ae~V~~~~~~~--~~v~~v~Q~eqlGTgHAV~~a~~~l~~~~~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~ 128 (460)
T COG1207 56 AEQVREALAER--DDVEFVLQEEQLGTGHAVLQALPALADDYDGDVLVLYGDVPLITAETLEELLAAHPAHGAAA 128 (460)
T ss_pred HHHHHHHhccc--cCceEEEecccCChHHHHHhhhhhhhcCCCCcEEEEeCCcccCCHHHHHHHHHhhhhcCCce
Confidence 34455555433 3699999999999999999998765 233 57778888865 8999998888876555433
No 262
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=20.67 E-value=1e+03 Score=25.21 Aligned_cols=172 Identities=13% Similarity=0.202 Sum_probs=95.3
Q ss_pred cceeEEEEEeCCCCCCcCchHHHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhc--CCCEEEEEcCCccc-CccchH
Q psy1765 146 SLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYA--TGKVLVFLDSHIEV-NTHWLE 222 (867)
Q Consensus 146 ~~l~EIIVVDn~Std~~~~~~~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A--~Gd~llfLDaD~~v-~p~wLe 222 (867)
+-+.+|||.=| .+.+.+.++.+ +..+.+-+...+.|--+..-.....+ .-++|+=+-.|--+ +|.-|.
T Consensus 41 s~~~rvvVATD--------de~I~~av~~~-G~~avmT~~~h~SGTdR~~Ev~~~l~~~~~~iIVNvQGDeP~i~p~~I~ 111 (247)
T COG1212 41 SGADRVVVATD--------DERIAEAVQAF-GGEAVMTSKDHQSGTDRLAEVVEKLGLPDDEIIVNVQGDEPFIEPEVIR 111 (247)
T ss_pred cCCCeEEEEcC--------CHHHHHHHHHh-CCEEEecCCCCCCccHHHHHHHHhcCCCcceEEEEccCCCCCCCHHHHH
Confidence 33456666533 23455555555 23444444444555444333333332 55899999999865 899999
Q ss_pred HHHHHHHhcCCceeeeEEeeecCCCceecccc-ccccccccccccccccCCcCcCCCCCCCCCcccccccccceEeEeHH
Q psy1765 223 PLLVPIAERTNTVTVPIIDIINADTFQYTSSA-LVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQ 301 (867)
Q Consensus 223 ~Ll~~l~~~~~~vv~p~i~~i~~~~~~~~~~~-~~~g~f~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~G~~~airR~ 301 (867)
.+++.+......++++.....+.+...-.+.. .....-...+.|..-.+|...-. ... .|+ .-.=|..++||.
T Consensus 112 ~~~~~L~~~~~~~aTl~~~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~--~~~-~p~---l~HIGIYayr~~ 185 (247)
T COG1212 112 AVAENLENSNADMATLAVKITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDN--FGG-TPF---LRHIGIYAYRAG 185 (247)
T ss_pred HHHHHHHhCCcceeeeeeecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccc--cCC-cch---hheeehHHhHHH
Confidence 99999998877777766544332211000000 11111123455554444433110 000 111 112356789999
Q ss_pred HHHHhCCCCCCCCCCcccchHH--HHHHHHcCCeEEE
Q psy1765 302 YFDSLGQYDAGLEIWGGENLEL--SFRIWMCGGSLAM 336 (867)
Q Consensus 302 ~f~~vGgfDe~~~~~G~ED~Dl--s~Rl~~~G~~i~~ 336 (867)
++++...+-+.. -|+.|- =+|+...|.+|..
T Consensus 186 ~L~~f~~~~ps~----LE~~E~LEQLR~Le~G~kI~v 218 (247)
T COG1212 186 FLERFVALKPSP----LEKIESLEQLRVLENGEKIHV 218 (247)
T ss_pred HHHHHHhcCCch----hHHHHHHHHHHHHHcCCeeEE
Confidence 999988887765 355554 3788999999854
No 263
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=20.32 E-value=3e+02 Score=31.95 Aligned_cols=61 Identities=10% Similarity=0.078 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCCEEEEEcCCCcCchhHHhHhhhhcC-CCEEEEEcCCc-ccCccchHHHHHHHHh
Q psy1765 167 EVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYAT-GKVLVFLDSHI-EVNTHWLEPLLVPIAE 230 (867)
Q Consensus 167 ~l~~~~~~~~~~~vrii~~~~n~G~a~ArN~G~~~A~-Gd~llfLDaD~-~v~p~wLe~Ll~~l~~ 230 (867)
.+.+++.. .++.++..++..|.+.+.-.++.... .+.++++++|. .+.+..++.+++...+
T Consensus 61 ~i~~~~~~---~~~~~i~~~~~~Gt~~al~~a~~~l~~~~~vlV~~gD~P~i~~~~i~~l~~~~~~ 123 (456)
T PRK09451 61 LLKQTLAD---EPLNWVLQAEQLGTGHAMQQAAPFFADDEDILMLYGDVPLISVETLQRLRDAKPQ 123 (456)
T ss_pred HHHHhhcc---CCcEEEECCCCCCcHHHHHHHHHhhccCCcEEEEeCCcccCCHHHHHHHHHHhhc
Confidence 45555432 36777877777898888888877653 57899999998 4677888888876543
Done!