RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1765
(867 letters)
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil,
rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens}
PDB: 2d7r_A*
Length = 570
Score = 348 bits (894), Expect = e-110
Identities = 178/593 (30%), Positives = 256/593 (43%), Gaps = 107/593 (18%)
Query: 1 MVLNEQDLITRDEGYRYYGFNALISNKLSLDRKIPDTRNSLCANQTFPSTLPSTSVIICF 60
D D+ YR GFN +S+K+SL+R +PD R+ C ++ + TLP+TS+
Sbjct: 61 RPYPMTDAERVDQAYRENGFNIYVSDKISLNRSLPDIRHPNCNSKRYLETLPNTSI---- 116
Query: 61 YNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYR 120
II N+G L R
Sbjct: 117 --------------------------IIPF--------------------HNEGWSSLLR 130
Query: 121 TSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRV 180
T ++ L+ EI+LV+DFS+ L +E ++ + V
Sbjct: 131 TV--------------HSVLNRSPPELVAEIVLVDDFSDREH-LKKPLEDYMALFPS--V 173
Query: 181 HLYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPII 240
+ RT KREGLIR RM GA ATG V+ FLDSH E N +WL PLL IA T+ P+I
Sbjct: 174 RILRTKKREGLIRTRMLGASVATGDVITFLDSHCEANVNWLPPLLDRIARNRKTIVCPMI 233
Query: 241 DIINADTFQY--TSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAI 298
D+I+ D F+Y + +RG F+W +++K +P D P SP MAGGLFA+
Sbjct: 234 DVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQK--ADPSDPFESPVMAGGLFAV 291
Query: 299 DRQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNE 358
DR++F LG YD GLEIWGGE E+SF++WMCGG + IPCSR+GH++R PY
Sbjct: 292 DRKWFWELGGYDPGLEIWGGEQYEISFKVWMCGGRMEDIPCSRVGHIYRKYVPYKV-PAG 350
Query: 359 DPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVY 418
L RN RVA VWMDEY E+ ++RPE R++ GDV +K+LR+ L CKSFKW++ +
Sbjct: 351 VSLARNLKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIA 410
Query: 419 PEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTNSL------RVAHVWMDEYIEHFL 472
++ E W ++ RN L +
Sbjct: 411 WDLPKFYPPVEPPAAAWGEI------------RNVGTGLCADTKHGALGSPLRLEGCVRG 458
Query: 473 KQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQP 532
+ N+ T R+ +R + K+ D +
Sbjct: 459 RGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFD--------AISHTSPVTLYDCH-SMK 509
Query: 533 KFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHW 585
Q W Y + + C+ + + + C+ S TQ W
Sbjct: 510 GNQLW-----KYRKDKTLYHPVSGSCMDCSESDHR---IFMNTCNPSSLTQQW 554
Score = 121 bits (304), Expect = 7e-29
Identities = 61/276 (22%), Positives = 94/276 (34%), Gaps = 88/276 (31%)
Query: 453 YTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEM 512
N RVA VWMDEY E+ ++RPE R++ GDV +K+LR+ L CKSFKW++ + ++
Sbjct: 354 ARNLKRVAEVWMDEYAEYIYQRRPEYRHLSAGDVAVQKKLRSSLNCKSFKWFMTKIAWDL 413
Query: 513 ILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLV 572
E W IR T LC +K GSPL
Sbjct: 414 PKFYPPVEPPAAAW---------------------GEIRNVGTGLCADTK-HGALGSPLR 451
Query: 573 LKKC------DELSKTQHWSKTDKSELVLAEL-----LCLDAGA--TKPKLTKCHEMGGS 619
L+ C + Q ++ T + ++ + C DA + + L CH M G+
Sbjct: 452 LEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFDAISHTSPVTLYDCHSMKGN 511
Query: 620 QEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFH 679
Q W Y
Sbjct: 512 Q-----------LW---------------------------------------KYRKDKT 521
Query: 680 IRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRW 715
+ + C+ + + + C+ S TQ+W
Sbjct: 522 LYHPVSGSCMDCSESDHR---IFMNTCNPSSLTQQW 554
Score = 91.1 bits (225), Expect = 4e-19
Identities = 43/186 (23%), Positives = 67/186 (36%), Gaps = 40/186 (21%)
Query: 626 LRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGT 685
L CKSFKW++ + ++ + W IR GT
Sbjct: 397 LNCKSFKWFMTKIAWDLPKFYPPVEPPAAAW---------------------GEIRNVGT 435
Query: 686 DLCLTSKVDKTKGSPLVLKKC------DELSKTQRWSKTDKSELVLAEL-----LCLDAG 734
LC +K GSPL L+ C + Q ++ T + ++ + C DA
Sbjct: 436 GLCADTK-HGALGSPLRLEGCVRGRGEAAWNNMQVFTFTWREDIRPGDPQHTKKFCFDAI 494
Query: 735 A--TKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKD 792
+ + L CH M G+Q W + R +Y P +G+C+ + I M C
Sbjct: 495 SHTSPVTLYDCHSMKGNQLWKY--RKDKTLYHPVSGSCMDCSE--SDHRIFMNTCNPSSL 550
Query: 793 T-SWDL 797
T W
Sbjct: 551 TQQWLF 556
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 324 bits (830), Expect = e-101
Identities = 183/596 (30%), Positives = 268/596 (44%), Gaps = 128/596 (21%)
Query: 2 VLNEQDLITRDEGYRYYGFNALISNKLSLDRKIPDTRNSLCANQTFPSTLPSTSVIICFY 61
+ + + + Y FN + S+KL +DR IPDTR
Sbjct: 16 YVGGTMVRSGQDPYARNKFNQVESDKLRMDRAIPDTR----------------------- 52
Query: 62 NEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRT 121
H + + L T +++ N+ R L RT
Sbjct: 53 --HDQCQRKQWRVDLPATS------VVITF-------------------HNEARSALLRT 85
Query: 122 SKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVH 181
+ K L+ EIILV+D+S P + + K V
Sbjct: 86 V--------------VSVLKKSPPHLIKEIILVDDYSNDPED-GALLGKIEK------VR 124
Query: 182 LYRTSKREGLIRARMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIID 241
+ R +REGL+R+R+ GA A KVL FLDSH E N HWLEPLL +AE V PIID
Sbjct: 125 VLRNDRREGLMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPLLERVAEDRTRVVSPIID 184
Query: 242 IINADTFQYT-SSALVRGGFNWGLHFKWENL-PKGTLNSSEDFIKPILSPTMAGGLFAID 299
+IN D FQY +SA ++GGF+W L FKW+ + P+ + + + PI +P +AGGLF +D
Sbjct: 185 VINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMD 244
Query: 300 RQYFDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRPY-NNGHNE 358
+ YF+ LG+YD +++WGGENLE+SFR+W CGGSL +IPCSR+GHVFR + PY G +
Sbjct: 245 KFYFEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSG 304
Query: 359 DPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVY 418
RN+ R A VWMDEY + P ARN+ YG++ R +LR +L CK FKWYL+NVY
Sbjct: 305 TVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKLSCKPFKWYLENVY 364
Query: 419 PEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTNSLRVAH--------VWMDEYIEH 470
PE+ +P + + ++Q + + V W
Sbjct: 365 PELRVPDHQD----IAFGALQQGT-NCLDTLGHFADGVVGVYECHNAGGNQEWA------ 413
Query: 471 FLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVE 530
+T K ++ C + ++ E ++KW Q+E
Sbjct: 414 ---------------LTKEKSVKHMDLCLTVVDRAPGSLIKLQ--GCRENDSRQKWEQIE 456
Query: 531 QPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWS 586
+R ++LCL S+ K+ G L ++ C + +Q W
Sbjct: 457 GNS---------------KLRHVGSNLCLDSRTAKSGG--LSVEVCGP-ALSQQWK 494
Score = 120 bits (301), Expect = 1e-28
Identities = 66/284 (23%), Positives = 97/284 (34%), Gaps = 85/284 (29%)
Query: 437 QVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARL 496
+ + P P S N+ R A VWMDEY + P ARN+ YG++ R +LR +L
Sbjct: 292 RKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYYAAVPSARNVPYGNIQSRLELRKKL 351
Query: 497 GCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTD 556
CK FKWYL+NVYPE+ +P L
Sbjct: 352 SCKPFKWYLENVYPELRVPDH---------------------------QDIAFGALQQGT 384
Query: 557 LCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLDAGATKPK----LTK 612
CL + + + +C Q W+ T + + + LCL P L
Sbjct: 385 NCLDTL-GHFADGVVGVYECHNAGGNQEWALTKEKSVKHMD-LCLTVVDRAPGSLIKLQG 442
Query: 613 CHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRAR 672
C E Q KW Q+E
Sbjct: 443 CRENDSRQ----------------------------------KWEQIEGNS--------- 459
Query: 673 NYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWS 716
+R G++LCL S+ K+ G L ++ C + +Q+W
Sbjct: 460 ------KLRHVGSNLCLDSRTAKSGG--LSVEVCGP-ALSQQWK 494
Score = 93.3 bits (231), Expect = 5e-20
Identities = 36/177 (20%), Positives = 58/177 (32%), Gaps = 35/177 (19%)
Query: 626 LRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGT 685
L CK FKWYL+NVYPE+ +P L
Sbjct: 351 LSCKPFKWYLENVYPELRVPDH---------------------------QDIAFGALQQG 383
Query: 686 DLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGATKPK----LT 741
CL + + + +C Q W+ T + + + LCL P L
Sbjct: 384 TNCLDTL-GHFADGVVGVYECHNAGGNQEWALTKEKSVKHMD-LCLTVVDRAPGSLIKLQ 441
Query: 742 KCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKDTSWDLV 798
C E Q+W + + + + CL S+ ++ + +E+C W
Sbjct: 442 GCRENDSRQKWEQIEGNSK-LRHVGSNLCLDSRTA-KSGGLSVEVCGPALSQQWKFT 496
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1;
glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus
musculus} SCOP: b.42.2.1 c.68.1.17
Length = 472
Score = 308 bits (791), Expect = 2e-96
Identities = 150/450 (33%), Positives = 224/450 (49%), Gaps = 55/450 (12%)
Query: 145 QSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATG 204
+ ++ EI+LV+D SE L +ES+VK L VH+ R +R GLIRAR+ GA + G
Sbjct: 58 RHMIEEIVLVDDASERD-FLKRPLESYVKKLK-VPVHVIRMEQRSGLIRARLKGAAVSRG 115
Query: 205 KVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWG 263
+V+ FLD+H E WLEPLL I TV PIID+I+ DTF+Y S + GGFNW
Sbjct: 116 QVITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWK 175
Query: 264 LHFKWENLPKGTLNS-SEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLE 322
L+F+W +P+ ++ D P+ +PTMAGGLF+IDR YF +G YDAG++IWGGENLE
Sbjct: 176 LNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLE 235
Query: 323 LSFRIWMCGGSLAMIPCSRIGHVFRSRRPYN-NGHNEDPLTRNSLRVAHVWMDEYIEHFL 381
+SFRIW CGG+L ++ CS +GHVFR PY G + +N+ R+A VWMDE+ F
Sbjct: 236 ISFRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFY 295
Query: 382 KQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQP 441
P +DYGD++ R LR +L CK F WYL+N+YP+ +P + + +
Sbjct: 296 IISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPDSQIPRHYFSLGEIRNVETN-- 353
Query: 442 KFQPWYSRARNYTNSLRVAH------VWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRAR 495
+ +R N + H V+ T K++R
Sbjct: 354 QCLDNMARKENEKVGIFNCHGMGGNQVFS---------------------YTANKEIRTD 392
Query: 496 LGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSST 555
C + + + + + + W ++ ++
Sbjct: 393 DLC----LDVSKLNGPVTMLKCHHLKGNQLWEYDPVKL---------------TLQHVNS 433
Query: 556 DLCLTSKVDKTKGSPLVLKKCDELSKTQHW 585
+ CL ++ ++ C S++Q W
Sbjct: 434 NQCLDKATEEDSQ-VPSIRDCTG-SRSQQW 461
Score = 135 bits (341), Expect = 7e-34
Identities = 47/120 (39%), Positives = 76/120 (63%), Gaps = 2/120 (1%)
Query: 25 SNKLSLDRKIPDTRNSLCANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLL 84
S ++L+R +PD R C + +P LP+TSV+I F+NE +TL R+V ++++R+ + ++
Sbjct: 2 SEMIALNRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMI 61
Query: 85 HEIILVNDFSEYPSNLHGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYATGKNRI 144
EI+LV+D SE L +E++VK L VH+ R +R GLIRAR+ GA + G+
Sbjct: 62 EEIVLVDDASERD-FLKRPLESYVKKLK-VPVHVIRMEQRSGLIRARLKGAAVSRGQVIT 119
Score = 119 bits (299), Expect = 1e-28
Identities = 57/266 (21%), Positives = 93/266 (34%), Gaps = 81/266 (30%)
Query: 452 NYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPE 511
N+ R+A VWMDE+ F P +DYGD++ R LR +L CK F WYL+N+YP+
Sbjct: 275 INKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPD 334
Query: 512 MILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPL 571
+P Y S IR T+ CL + + + + +
Sbjct: 335 SQIPRH--------------------------YFSLGEIRNVETNQCLDN-MARKENEKV 367
Query: 572 VLKKCDELSKTQHWSKTDKSELVLAELLCLDAGA--TKPKLTKCHEMGGSQEYWCWLRCK 629
+ C + Q +S T E+ + LCLD + KCH + G+Q
Sbjct: 368 GIFNCHGMGGNQVFSYTANKEIRTDD-LCLDVSKLNGPVTMLKCHHLKGNQ--------- 417
Query: 630 SFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCL 689
W D ++ ++ CL
Sbjct: 418 --LWEYDP--------------------------------------VKLTLQHVNSNQCL 437
Query: 690 TSKVDKTKGSPLVLKKCDELSKTQRW 715
++ ++ C S++Q+W
Sbjct: 438 DKATEEDSQ-VPSIRDCTG-SRSQQW 461
Score = 104 bits (259), Expect = 2e-23
Identities = 40/174 (22%), Positives = 66/174 (37%), Gaps = 31/174 (17%)
Query: 626 LRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSGT 685
L+CK F WYL+N+YP+ +P Y S IR T
Sbjct: 319 LQCKPFSWYLENIYPDSQIPRH--------------------------YFSLGEIRNVET 352
Query: 686 DLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGA--TKPKLTKC 743
+ CL + + + + + + C + Q +S T E+ + LCLD + KC
Sbjct: 353 NQCLDN-MARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDD-LCLDVSKLNGPVTMLKC 410
Query: 744 HEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKDTSWDL 797
H + G+Q W + K + + CL ++ V + C + W L
Sbjct: 411 HHLKGNQLWEYD-PVKLTLQHVNSNQCLDKATEEDSQVPSIRDCTGSRSQQWLL 463
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 65.6 bits (159), Expect = 6e-11
Identities = 80/570 (14%), Positives = 169/570 (29%), Gaps = 162/570 (28%)
Query: 79 TGQSLLH--EIILVN------DFSEYPSNLHGEVETFVKG-LNDGRV-HLYRTSKREGLI 128
TG+ +I+ V +F +V+ K L+ + H+ +
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCK------DVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 129 RARMFGAKYATGKNRIQSLLHEIILVN--------------------DFSEYPSNLHGEV 168
R+F + + +Q + E++ +N + E L+ +
Sbjct: 65 L-RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 169 ESFVKGLNNGRVHLYRTSKREGLIRAR---------MFGAKYATGK-VL---VFLDSHIE 215
+ F K N R+ Y R+ L+ R + G+ GK + V L ++
Sbjct: 124 QVFAK-YNVSRLQPY-LKLRQALLELRPAKNVLIDGVLGS----GKTWVALDVCLSYKVQ 177
Query: 216 V----NTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSS--ALVRGGFNWGLHFKWE 269
WL + + T +++++ +Q + + N L
Sbjct: 178 CKMDFKIFWLN-----LKNCNSPET--VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 270 NLPKGTLNSSEDFIKPIL------SPTMAGGLFAI---------DRQYFDSLG------- 307
L S+ + +L + F + +Q D L
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQNAKAWNA-FNLSCKILLTTRFKQVTDFLSAATTTHI 289
Query: 308 ---QYDAGLEIWGGENLELSFRIW-----------MCGGS---LAMIPCSRIGHVFRSRR 350
+ L E L + + + L++I S +
Sbjct: 290 SLDHHSMTLT--PDEVKSL-LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 351 PYNNGHNEDPLTR-NSLRVAHVWMDEYIEHFLKQR--PEARNI------------DYGDV 395
+ + N D LT + + EY + F + P + +I DV
Sbjct: 347 -WKH-VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV 404
Query: 396 TD------RKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSR 449
+ L + K + ++Y E+ + ++E L + V+ Y+
Sbjct: 405 MVVVNKLHKYSLVEK-QPKESTISIPSIYLELKVKLENEYALHRSI--VDH------YNI 455
Query: 450 ARNYTNSLRVAHVWMDEYIEHF----LKQRPEARNID-----YGDVT--DRKQLRARLGC 498
+ + + + ++D+Y LK + + D ++K
Sbjct: 456 PKTFDSD-DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAW 514
Query: 499 KSFKWYLDNV-----YPEMILPSDDE-ERL 522
+ L+ + Y I +D + ERL
Sbjct: 515 NASGSILNTLQQLKFYKPYICDNDPKYERL 544
Score = 41.0 bits (95), Expect = 0.002
Identities = 68/477 (14%), Positives = 125/477 (26%), Gaps = 160/477 (33%)
Query: 339 CSRIGHVFRS--RRPYNNGHNEDPLTRNSLRVAHVWMDEYIEHFLKQRPEARNIDY-GDV 395
I VF ++ +D + ++ L E I+H + +
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQD-MPKSILS------KEEIDHIIMSKDAVSGTLRLFWT 70
Query: 396 TDRKQLRA------RLGCKSFKWYLDNVYPEMILPSDD----EERLKKKWAQVEQPKFQP 445
KQ + ++K+ + + E PS E+ + + F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAK 128
Query: 446 WY-SRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWY 504
+ SR + Y LR + L+ RP + G + K A C S+K
Sbjct: 129 YNVSRLQPYLK-LR----------QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 505 L---DNVY---------PEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRL 552
++ PE +L E L+K Q++
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVL-----EMLQKLLYQIDPN-------------------- 212
Query: 553 SSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAE-----LLCLDAGATK 607
TS+ D + L + H + + L+ ++ LL L
Sbjct: 213 ------WTSRSDHSSNIKLRI----------HSIQAELRRLLKSKPYENCLLVLL----- 251
Query: 608 PKLTKCHEMGGSQEYWCW----LRCKSFKWYLDNVYPEMILPSDDE---DRLK----KKW 656
Q W L CK ++L + + D L
Sbjct: 252 ----------NVQNAKAWNAFNLSCK------------ILLTTRFKQVTDFLSAATTTHI 289
Query: 657 AQVEQPK-FQPWYSRA--RNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKC-----DE 708
+ P ++ Y + DL + +P L D
Sbjct: 290 SLDHHSMTLTPDEVKSLLLKY-----LDCRPQDL----PREVLTTNPRRLSIIAESIRDG 340
Query: 709 LSKTQRWSKTDKSEL---VLAELLCLDAGATKPKLTKCHEMGGSQEWNFVLRDKTPI 762
L+ W + +L + + L L+ + + V I
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL----------SVFPPSAHI 387
Score = 38.7 bits (89), Expect = 0.010
Identities = 38/270 (14%), Positives = 78/270 (28%), Gaps = 79/270 (29%)
Query: 6 QDLITRDEGYRYYGFNALIS-NKLSLDRKIP-DTRNSLCANQTFPSTLPSTSVIICFY-- 61
+D + + +++ + L + + SL+ P + R FP + ++++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 62 --------------------NEHPATLYRSVQTLLSRTGQSL-----LHEIILVNDFSEY 96
+ P S+ ++ L LH I+ Y
Sbjct: 398 DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV----DHY 453
Query: 97 PSNLHGEVETFVKGLNDGRV------HLYRTSKREGLIRARMFGAKY------------- 137
+ + + D HL E R +F +
Sbjct: 454 NIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE---RMTLFRMVFLDFRFLEQKIRHD 510
Query: 138 ATGKNRIQSLLHEIILVNDFSEY----------PSNLHGEVESFVKGLNNGRVHLYRTSK 187
+T N S+L+ + Y L + F+ + +L SK
Sbjct: 511 STAWNASGSILN---TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE---NLIC-SK 563
Query: 188 REGLIR-ARMFGAKYATGKVLVFLDSHIEV 216
L+R A M + +F ++H +V
Sbjct: 564 YTDLLRIALMAEDEA------IFEEAHKQV 587
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA
UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Length = 625
Score = 62.7 bits (152), Expect = 4e-10
Identities = 43/274 (15%), Positives = 81/274 (29%), Gaps = 28/274 (10%)
Query: 144 IQSLLH-------EIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARM 196
+ L + E+I+ +D S N+ V F ++ + L R
Sbjct: 112 LACLCNQKTIYDYEVIVADDGS--KENIEEIVREFES--LLNIKYVRQKDYGYQLCAVRN 167
Query: 197 FGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALV 256
G + A + LD + N W++ + +A N + I+ Y
Sbjct: 168 LGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQ 227
Query: 257 RGGFNWG--LHFKWENLPKGTLNSSEDFIKPILSPT------------MAGGLFAIDRQY 302
+ N + + K N S D+ T +GG A +++
Sbjct: 228 KSLINEIPEIITNNQVAGKVEQNKSVDWRIEHFKNTDNLRLCNTPFRFFSGGNVAFAKKW 287
Query: 303 FDSLGQYDAGLEIWGGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLT 362
G +D WGGE+ E +R++ G + + P +
Sbjct: 288 LFRAGWFDEEFTHWGGEDNEFGYRLYREGCYFRSVE---GAMAYHQEPPGKENETDRAAG 344
Query: 363 RNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVT 396
+N Y ++ A V+
Sbjct: 345 KNITVQLLQQKVPYFYRKKEKIESATLKRVPLVS 378
Score = 44.9 bits (106), Expect = 1e-04
Identities = 23/191 (12%), Positives = 57/191 (29%), Gaps = 36/191 (18%)
Query: 144 IQSLLH------EIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMF 197
++S L+ E+ + +D S + ++ N+ RV K +G+ A
Sbjct: 394 VESALNQTITDLEVCICDDGSTDDT--LRILQEHYA--NHPRVRFISQ-KNKGIGSASNT 448
Query: 198 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTV-PIIDIINADTFQYTSSALV 256
+ G + LDS + +E L + + V I+ +
Sbjct: 449 AVRLCRGFYIGQLDSDDFLEPDAVELCLDEFRKDLSLACVYTTNRNIDRE---------- 498
Query: 257 RGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIW 316
G + W + L S + + ++ ++ +
Sbjct: 499 --GNLISNGYNWPIYSREKL----------TSAMICHHFRMFTARAWNLTEGFNESIS-- 544
Query: 317 GGENLELSFRI 327
+ ++ ++
Sbjct: 545 NAVDYDMYLKL 555
Score = 37.6 bits (87), Expect = 0.017
Identities = 20/114 (17%), Positives = 38/114 (33%), Gaps = 12/114 (10%)
Query: 31 DRKIPDTRNSLCANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLS-RTGQSLLHEIIL 89
D R L + S++I YN L ++ L + +T E+I+
Sbjct: 72 DYVWAGKRKELDDYPRKQLIIDGLSIVIPTYN-RAKILAITLACLCNQKTIYDY--EVIV 128
Query: 90 VNDFSEYPSNLHGEVETFVKGL-NDGRVH-LYRTSKREGLIRARMFGAKYATGK 141
+D S+ +E V+ + + + + L R G + A
Sbjct: 129 ADDGSK------ENIEEIVREFESLLNIKYVRQKDYGYQLCAVRNLGLRAAKYN 176
Score = 35.3 bits (81), Expect = 0.086
Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 10/101 (9%)
Query: 42 CANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLH-EIILVNDFSEYPSNL 100
+P S+ I YN + R V++ L+ Q++ E+ + +D S +
Sbjct: 365 KIESATLKRVPLVSIYIPAYN-CSKYIVRCVESALN---QTITDLEVCICDDGSTDDT-- 418
Query: 101 HGEVETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYATGK 141
++ N RV K +G+ A + G
Sbjct: 419 LRILQEHYA--NHPRVRFISQ-KNKGIGSASNTAVRLCRGF 456
>2aai_B Ricin (B chain); glycosidase; HET: GAL BGC NDG NAG BMA MAN; 2.50A
{Ricinus communis} SCOP: b.42.2.1 b.42.2.1 PDB: 3rti_B*
3rtj_B* 1rzo_B*
Length = 262
Score = 55.1 bits (132), Expect = 3e-08
Identities = 37/218 (16%), Positives = 65/218 (29%), Gaps = 25/218 (11%)
Query: 552 LSSTDLCLTSKVDKTKGSPLVLKKCDELSKT-QHWSKTDKSELVLAEL-LCLDAG----A 605
+ S CLT+ + G +++ C+ + W D ++ L L A
Sbjct: 57 IRSNGKCLTTY-GYSPGVYVMIYDCNTAATDATRWQIWDNGTIINPRSSLVLAATSGNSG 115
Query: 606 TKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQ 665
T + + W + L ++ + Q
Sbjct: 116 TTLTVQTNI--YAVSQGWLPTNNTQPFVTTIVGLYGLCLQANSGQV--WIEDCSSEKAEQ 171
Query: 666 PWYSRARNYTSHFHIR-LSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELV 724
W + IR D CLTS + + + + C S QRW + ++
Sbjct: 172 QWA-----LYADGSIRPQQNRDNCLTSD-SNIRETVVKILSCGPASSGQRWMFKNDGTIL 225
Query: 725 LAEL-LCLDAGATKPKLTK-----CHEMGGSQEWNFVL 756
L LD A+ P L + H +Q W +
Sbjct: 226 NLYSGLVLDVRASDPSLKQIILYPLHG-DPNQIWLPLF 262
Score = 34.6 bits (79), Expect = 0.093
Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 15/96 (15%)
Query: 535 QPWYSRARNYTSHFHIR-LSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSEL 593
Q W + IR + D CLTS + + + + C S Q W + +
Sbjct: 171 QQWA-----LYADGSIRPQQNRDNCLTSD-SNIRETVVKILSCGPASSGQRWMFKNDGTI 224
Query: 594 VLAEL-LCLDAGATKPKLTK-----CHEMGGSQEYW 623
+ L LD A+ P L + H G + W
Sbjct: 225 LNLYSGLVLDVRASDPSLKQIILYPLH--GDPNQIW 258
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 55.1 bits (132), Expect = 6e-08
Identities = 39/282 (13%), Positives = 80/282 (28%), Gaps = 33/282 (11%)
Query: 550 IRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAEL-LCLDA---GA 605
+R + C+ ++ + CD LS Q + C G
Sbjct: 13 LRSFKSKQCVDIVGNQG-SGNIATYDCDGLS-DQQIIICGDGTIRNEARNYCFTPDGSGN 70
Query: 606 TKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMI-------------LPSDDEDRL 652
+ C W + + + + ++ + D
Sbjct: 71 ANVMSSPCTLYPEIPSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGD 130
Query: 653 KKKWAQVEQPKFQPWYSRAR-NYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSK 711
+ Q +Y R+R + +R +DLCL + +++ C++ +
Sbjct: 131 IGVYDCQNLDD-QYFYVRSRGPELFYGRLRNEKSDLCLDVE-GSDGKGNVLMYSCED-NL 187
Query: 712 TQRWSKTDKSELV-LAELLCLD----AGATKPKLTKCHEMGGSQEWNF----VLRDKTPI 762
Q + + E+V +CLD G+ + +C + Q W+ D
Sbjct: 188 DQWFRYYENGEIVNAKSGMCLDVEGSDGSGNVGIYRCDD-LRDQMWSRPNAYCNGDYCSF 246
Query: 763 YSPATGTCLGSKNRLENTVIVMEMCAQHKDTSWDLVPVGSLV 804
+ + CL + C D + V V
Sbjct: 247 LNKESNKCLDVSGDQGTGDVGTWQCDGLPDQRFKWVFDDWEV 288
Score = 35.5 bits (81), Expect = 0.080
Identities = 24/152 (15%), Positives = 43/152 (28%), Gaps = 20/152 (13%)
Query: 680 IRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAEL-LCLDAGATKP 738
+R + C+ ++ + CD LS Q+ + C +
Sbjct: 13 LRSFKSKQCVDIVGNQG-SGNIATYDCDGLS-DQQIIICGDGTIRNEARNYCFTPDGSGN 70
Query: 739 ------KLTKCHEMGGSQEWNFVLRDK-----------TPIYSPATGTCLGSKNRLENTV 781
T E+ SQ W R T I + A+G CL +
Sbjct: 71 ANVMSSPCTLYPEIPSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGD 130
Query: 782 IVMEMCAQHKDTSWDLVPVGSLVEGEKTQVAH 813
I + C D + + G + + +
Sbjct: 131 IGVYDCQNLDDQYFYVRSRGPELFYGRLRNEK 162
>1m2t_B Mistletoe lectin I B chain; ribosome inactivation, ribosome
inhibitor, hydrolase; HET: NAG FUC ADE; 1.89A {Viscum
album} SCOP: b.42.2.1 b.42.2.1 PDB: 2r9k_B* 3d7w_B*
3cef_B* 1sz6_B* 1pum_B* 1puu_B* 2rg9_B* 3o5w_B* 1onk_B*
1oql_B* 1tfm_B* 1pc8_B* 1yf8_B* 1ce7_B* 2mll_B*
Length = 263
Score = 52.9 bits (126), Expect = 1e-07
Identities = 33/217 (15%), Positives = 65/217 (29%), Gaps = 25/217 (11%)
Query: 552 LSSTDLCLTSKVDKTKGSPLVLKKCDELSKT-QHWSKTDKSELV-LAELLCLDAG----A 605
+ S CLT+ T G +++ C+ + W ++ L L A
Sbjct: 58 IRSNGSCLTTYGY-TAGVYVMIFDCNTAVREATIWQIWGNGTIINPRSNLVLAASSGIKG 116
Query: 606 TKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQ 665
T + + W + + + ++ + + + Q
Sbjct: 117 TTLTVQTLD--YTLGQGWLAGNDTAPRETTIYGFRDLCM--ESAGGSVYVETCTAGQENQ 172
Query: 666 PWYSRARNYTSHFHIRL-SGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELV 724
W IR CLT+ + + + + C S QRW T++ ++
Sbjct: 173 RWA-----LYGDGSIRPKQLQSQCLTNG-RDSISTVINIVSCSAGSSGQRWVFTNEGAIL 226
Query: 725 LAEL-LCLDAGATKPKLTK-----CHEMGGSQEWNFV 755
+ L +D P L + +Q W V
Sbjct: 227 NLKNGLAMDVAQANPSLQRIIIYPAT-GNPNQMWLPV 262
>2nxv_A ATP synthase subunits region ORF 6; majastridin, ATPase operon,
glycosyl transferase, rossmann F sulphur SAD,
transferase; 1.10A {Rhodobacter blasticus} PDB: 2qgi_A*
Length = 249
Score = 49.7 bits (118), Expect = 1e-06
Identities = 27/228 (11%), Positives = 53/228 (23%), Gaps = 23/228 (10%)
Query: 151 IILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMF--GAKYATGKVLV 208
LV D ++Y L E F + + G+ ++
Sbjct: 21 CSLVRDQAKYDRLLE-SFERFGFTPDKAEFLAADNREGNQFHGFSWHKQMLPRCKGRYVI 79
Query: 209 FLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKW 268
F +E+ + L+ I P + L LH
Sbjct: 80 FCHEDVELVDRGYDDLVAAIEALEE--ADPKWLVAGVAG--SPWRPLNHSVTAQALHISD 135
Query: 269 ENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELSFRIW 328
G + + ++ + R G + +L +
Sbjct: 136 ---VFGNDRRRGNVPCRVE--SLDECFLLMRRLKPVLNSYDMQG---FHYYGADLCLQAE 187
Query: 329 MCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEY 376
GG I + H Y ++ R +A + +
Sbjct: 188 FLGGRAYAID-FHLHH-------YGRAIADENFHRLRQEMAQKYRRWF 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 51.2 bits (122), Expect = 2e-06
Identities = 99/638 (15%), Positives = 173/638 (27%), Gaps = 257/638 (40%)
Query: 348 SRRPYNNGHNEDPLTRNSLRVA-HVWMDEYI------EHFLKQRPE-------------- 386
S RP L+ SL V + E F K PE
Sbjct: 5 STRPLT-------LSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 387 -----------ARNIDYGDVTDRKQLRARLGCKSF-KWYL--DNVYPEMI---LPSDDEE 429
+ ++ V Q+ L F YL ++++ + L +++
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEGNDIH--ALAAKLLQENDT 114
Query: 430 RLKKKWAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFL---KQRPEAR------- 479
L K +NY + +A D+ L A+
Sbjct: 115 TLVKT------------KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162
Query: 480 ---NIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQP 536
DY + +LR Y Y ++ L K A+ +
Sbjct: 163 QGNTDDYFE-----ELRDL--------Y--QTYHVLV------GDLIKFSAETLSELIRT 201
Query: 537 WYSRARNYTSHFHIR--LS------STDLCLTSKVDKTKGS-PLV-LKKCDELSKTQ--H 584
+ +T +I L D L+ + S PL+ + Q H
Sbjct: 202 TLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-----SCPLIGV--------IQLAH 248
Query: 585 WSKTDKSELVLAELLCLDAGATKPKL---TKCHE---------MGGSQE----------- 621
+ +V A+LL G + L T + S E
Sbjct: 249 Y-------VVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAIT 301
Query: 622 --YWCWLRCKSFKWYLDNVYPEMILPS----DDEDR-------------LKKKWAQVEQP 662
++ +RC YP LP D + L ++ QV+
Sbjct: 302 VLFFIGVRCY-------EAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQE--QVQD- 351
Query: 663 KFQPWYSRARN----YTSHFHIRL--SGTDLCLTSKVDKTKGSPLVLKK-CDELSKTQRW 715
Y N I L +L ++ G P L L K +
Sbjct: 352 -----YVNKTNSHLPAGKQVEISLVNGAKNLVVS-------GPPQSLYGLNLTLRKAKAP 399
Query: 716 SKTDKSELVLAELLCLDAGATKPKLTKC--------HE--MGGSQEWNFVLRD------- 758
S D+S + +E K K + H + + + + +D
Sbjct: 400 SGLDQSRIPFSE--------RKLKFSNRFLPVASPFHSHLLVPASD--LINKDLVKNNVS 449
Query: 759 ------KTPIYSPATGT--CLGSKNRLENTVIVMEMC--------AQHKDTSW--DLVP- 799
+ P+Y G+ + S + E IV + + D P
Sbjct: 450 FNAKDIQIPVYDTFDGSDLRVLSGSISER--IVDCIIRLPVKWETTTQFKATHILDFGPG 507
Query: 800 ----VGSLV----EGEKTQV---AHMEESIPNENKGFR 826
+G L +G +V ++ + P+++ GF+
Sbjct: 508 GASGLGVLTHRNKDGTGVRVIVAGTLDIN-PDDDYGFK 544
Score = 37.7 bits (87), Expect = 0.022
Identities = 31/159 (19%), Positives = 53/159 (33%), Gaps = 46/159 (28%)
Query: 178 GRVHLYRTSK--REGLIRA-RMFGAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERT-- 232
G LY+TSK ++ RA F Y + + +++ + + H+ I E
Sbjct: 1632 GM-DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSA 1690
Query: 233 ---------NTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFI 283
T I IN + YT + + KG L++++ F
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYT----------------FRS-EKGLLSATQ-FT 1732
Query: 284 KP-ILSPTMAGGLFAI--DRQYFD--------SLGQYDA 311
+P + M F + SLG+Y A
Sbjct: 1733 QPALT--LMEKAAFEDLKSKGLIPADATFAGHSLGEYAA 1769
Score = 31.2 bits (70), Expect = 2.0
Identities = 13/102 (12%), Positives = 27/102 (26%), Gaps = 25/102 (24%)
Query: 453 YTNSLRVAHVW--MDEYIE--------------------HFLKQRPEARNIDYGDVTDRK 490
Y S VW D + + HF ++ + +Y +
Sbjct: 1636 YKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFET 1695
Query: 491 QLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQP 532
+ +L + ++ ++ L Q QP
Sbjct: 1696 IVDGKLKTEKIFKEINEHSTSYTF-RSEKGLLSAT--QFTQP 1734
>3l7i_A Teichoic acid biosynthesis protein F; GT-B fold, monotopic membrane
protein, structural protein; 2.70A {Staphylococcus
epidermidis} PDB: 3l7j_A 3l7k_A* 3l7l_A* 3l7m_A*
Length = 729
Score = 48.4 bits (115), Expect = 1e-05
Identities = 36/385 (9%), Positives = 92/385 (23%), Gaps = 43/385 (11%)
Query: 144 IQSLLH------EIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMF 197
++S+ +I+VND S ++ +K + + + G AR
Sbjct: 21 LESIKQQRTQDFNLIIVNDGS--TDQSKKLMDEAIKDYDK-NIRFIDLDENSGHAHARNI 77
Query: 198 GAKYATGKVLVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVR 257
+ +FLD+ E+ ++ + + T+ + PI
Sbjct: 78 ALEEVETPYFMFLDADDELASYAIT-FYLEKFNNTDGLIAPIHSFTTQRP---------- 126
Query: 258 GGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLG-QYDAGLEIW 316
F + + ++++ I L A + + +++ L
Sbjct: 127 -------QFVDLDRVRVEYFNAKENINSFLRKQSACNI-IFRTAIVRAHHIRFNENLNT- 177
Query: 317 GGENLELSFRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEY 376
+ I + Y+ L+ + +
Sbjct: 178 -YVDWSFVLEYMKYVNKFVRIF---NFPFYFRGEVYDPFETL-TLSEQNFDILFKDYVNS 232
Query: 377 IEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWA 436
+K+ + ++ ++ + + L +
Sbjct: 233 FYDAIKRATNPKVREFIVTKMGNKIANEFEPTRYDINERYQTHKDTLVELSKFLHVHLVK 292
Query: 437 QVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARL 496
+ N T+ + + K+ +
Sbjct: 293 NQKLINKIETILLMNNETDKAFKVNQFRKTLRHVKNIVLRRKNKERSLYDLTDKEDNVKP 352
Query: 497 GCKSF-----KWYLDN---VYPEMI 513
F K Y D+ +Y M
Sbjct: 353 KTIVFESFGGKNYSDSPKYIYEYMQ 377
Score = 47.3 bits (112), Expect = 2e-05
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 6/90 (6%)
Query: 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGL 111
++I+ +YN + ++++ + Q +I+VND S ++ +K
Sbjct: 2 NKLTIIVTYYN-AEEYITGCLESIKQQRTQDF--NLIIVNDGS--TDQSKKLMDEAIKD- 55
Query: 112 NDGRVHLYRTSKREGLIRARMFGAKYATGK 141
D + + G AR +
Sbjct: 56 YDKNIRFIDLDENSGHAHARNIALEEVETP 85
>2vlc_A Cinnamomin, type 2 ribosome-inactivating protein cinnamomin III;
ribosome inhibiting proteins, toxin, hydrolase, plant
defense; HET: AS5 BMA XYP XYS; 2.95A {Cinnamomum
camphora}
Length = 570
Score = 46.0 bits (108), Expect = 5e-05
Identities = 37/219 (16%), Positives = 73/219 (33%), Gaps = 26/219 (11%)
Query: 552 LSSTDLCLTSKVDKTKGSPLVLKKCDEL-SKTQHWSKTDKSELVLAEL-LCLDAG----A 605
+ S CLT+ + G +++ C + W ++ + L L A
Sbjct: 364 IRSNGKCLTT-NGYSAGDYVMIYDCRTPVTAASIWQFWANGTIINPQSALVLSAESGNPR 422
Query: 606 TKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQ 665
T + S++ W + ++ + ++ + Q
Sbjct: 423 TTLTVQADI--YASRQGWLAGNNTEPFVTSIVGFNDLCMQANGDAM--WVVECESSKAEQ 478
Query: 666 PWYSRARNYTSHFHIR-LSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELV 724
W IR D CLTS + ++GS +++ C S+ QRW + ++
Sbjct: 479 KWA-----LYPDGSIRPHQDRDRCLTSTDNHSQGSIIIISSCSPGSEGQRWVFMNDGTIL 533
Query: 725 LAEL-LCLDAGATKPKLTK-----CHEMGGS-QEWNFVL 756
+ L +D + P L + G Q+W +L
Sbjct: 534 NLKNGLVMDVKGSDPSLHQIIIWPAT--GKPNQKWLPLL 570
>1abr_B Abrin-A; glycosidase/carbohydrate complex, lectin, lectin
(agglutinin), glycoprotein, plant SEED protein, plant
toxin; HET: NDG NGZ MAN BMA BGC; 2.14A {Abrus
precatorius} SCOP: b.42.2.1 b.42.2.1 PDB: 2zr1_B*
2q3n_B*
Length = 267
Score = 44.0 bits (103), Expect = 1e-04
Identities = 20/123 (16%), Positives = 45/123 (36%), Gaps = 9/123 (7%)
Query: 680 IRLSGTD-LCLTSKVDKTK-GSPLVLKKC-DELSKTQRWSKTDKSELVLAELLCLDAGAT 736
+R+ G D +C+ + G+ +++ KC D L + Q W+ + CL
Sbjct: 16 VRIGGRDGMCVDVYDNGYHNGNRIIMWKCKDRLEENQLWTLKSDKTIRSNGK-CLTTYGY 74
Query: 737 KP----KLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKD 792
P + C ++ + + D I +P + L +++ + ++
Sbjct: 75 APGSYVMIYDCTS-AVAEATYWEIWDNGTIINPKSALVLSAESSSMGGTLTVQTNEYLMR 133
Query: 793 TSW 795
W
Sbjct: 134 QGW 136
>1dqg_A Mannose receptor; beta trefoil, multilectin receptor, pituitary
hormones, sulfated carbohydrate, sugar binding protein;
1.70A {Mus musculus} SCOP: b.42.2.2 PDB: 1dqo_A* 1fwu_A*
1fwv_A*
Length = 135
Score = 42.0 bits (98), Expect = 1e-04
Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 13/123 (10%)
Query: 678 FHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELV-LAELLCLDAGAT 736
F I C+ D + C+ +++Q++ S+++ +A LCL +
Sbjct: 6 FLIYNEDHKRCV----DALSAISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSK 61
Query: 737 KP----KLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKD 792
L C Q+W ++ + + I + +
Sbjct: 62 TDWASVTLYACDSKSEYQKWEC---KNDTLFGIKGTELYFNYGNRQEKNIKLYKGSGLWS 118
Query: 793 TSW 795
W
Sbjct: 119 R-W 120
Score = 36.2 bits (83), Expect = 0.011
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 9/82 (10%)
Query: 548 FHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELV-LAELLCLDAGAT 606
F I C+ D + C+ +++Q + S+++ +A LCL +
Sbjct: 6 FLIYNEDHKRCV----DALSAISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGVPSK 61
Query: 607 KP----KLTKCHEMGGSQEYWC 624
L C Q++ C
Sbjct: 62 TDWASVTLYACDSKSEYQKWEC 83
Score = 32.8 bits (74), Expect = 0.18
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 663 KFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSE 722
+ Q + + S I LCL KT + + L CD S+ Q+W + +
Sbjct: 35 ESQKF-----RWVSDSQIMSVAFKLCL-GVPSKTDWASVTLYACDSKSEYQKWECKNDTL 88
Query: 723 LVLAELLCLDAGATK 737
+ +
Sbjct: 89 FGIKGTELYFNYGNR 103
Score = 30.5 bits (68), Expect = 1.2
Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 6/75 (8%)
Query: 533 KFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSE 592
+ Q + + S I + LCL KT + + L CD S+ Q W + +
Sbjct: 35 ESQKF-----RWVSDSQIMSVAFKLCL-GVPSKTDWASVTLYACDSKSEYQKWECKNDTL 88
Query: 593 LVLAELLCLDAGATK 607
+ +
Sbjct: 89 FGIKGTELYFNYGNR 103
>1knl_A Endo-1,4-beta-xylanase A; carbohydrate binding module, CBM13 xylan
binding domain, LEC ricin B-like, beta-trefoil fold,
hydrolase; 1.20A {Streptomyces lividans} SCOP: b.42.2.1
PDB: 1knm_A* 1mc9_A*
Length = 130
Score = 39.6 bits (93), Expect = 6e-04
Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 9/97 (9%)
Query: 680 IRLSGTDLCLTSKVDKTK-GSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGATKP 738
I+ G+ CL T G+ L L C Q+W+ TD EL + CLDA T
Sbjct: 9 IKGVGSGRCLDVPDASTSDGTQLQLWDCHS-GTNQQWAATDAGELRVYGDKCLDAAGTSN 67
Query: 739 ----KLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCL 771
++ C G +Q+W L + +G CL
Sbjct: 68 GSKVQIYSCWG-GDNQKW--RLNSDGSVVGVQSGLCL 101
>1xez_A Hemolysin, cytolysin; pore-forming toxin, Pro-toxin, water- soluble
monomer, beta-prism, beta-trefoil; HET: BOG; 2.30A
{Vibrio cholerae} PDB: 3o44_A
Length = 721
Score = 42.2 bits (98), Expect = 7e-04
Identities = 28/157 (17%), Positives = 44/157 (28%), Gaps = 14/157 (8%)
Query: 472 LKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQ 531
K + +R +Y+ + D R K A
Sbjct: 394 YKASATETGSTDFIIDSSVNIRPIYNGAYKHYYVVGAHQSYHGFEDTPRRRITKSASFTV 453
Query: 532 PKFQPWYSRARNYTSHFHIRLSS-TDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDK 590
P ++ R +++L+S + C+ L CD Q +
Sbjct: 454 DWDHPVFTGGR----PVNLQLASFNNRCI----QVDAQGRLTANMCDSQQSAQSFIYDQL 505
Query: 591 SELV--LAELLCLDAGATKPKLTKCHEMGGSQEYWCW 625
V LCLD GA L C+ +Q W W
Sbjct: 506 GRYVSASNTKLCLD-GAALDALQPCN-QNLTQR-WEW 539
Score = 40.2 bits (93), Expect = 0.003
Identities = 22/114 (19%), Positives = 38/114 (33%), Gaps = 14/114 (12%)
Query: 666 PWYSRARNYTSHFHIRLSG-TDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELV 724
P ++ R +++L+ + C+ L CD Q + V
Sbjct: 458 PVFTGGR----PVNLQLASFNNRCI----QVDAQGRLTANMCDSQQSAQSFIYDQLGRYV 509
Query: 725 --LAELLCLDAGATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNR 776
LCLD GA L C+ +Q W + + + +G LG +
Sbjct: 510 SASNTKLCLD-GAALDALQPCN-QNLTQRW-EWRKGTDELTNVYSGESLGHDKQ 560
>3c9z_A Agglutinin II, SNA-II; beta-trefoil, ricin-B domain, glycosylation,
glycoprotein, L sugar binding protein, plant protein;
HET: NAG FUC SO4; 1.35A {Sambucus nigra} PDB: 3ca0_A*
3ca1_A* 3ca3_A* 3ca4_A* 3ca5_A* 3ca6_A* 3cah_A* 1hwm_B*
1hwn_B* 1hwo_B* 1hwp_B*
Length = 258
Score = 40.8 bits (95), Expect = 0.001
Identities = 22/128 (17%), Positives = 43/128 (33%), Gaps = 9/128 (7%)
Query: 678 FHIRLSGTD-LCLTSKVDKTK-GSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGA 735
F + G D LC+ + G+PL L C + QRW+ + C+ A
Sbjct: 3 FTRNIVGRDGLCVDVRNGYDTDGTPLQLWPCGT-QRNQRWTFDSDDTIRSMGK-CMTANG 60
Query: 736 TKP----KLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHK 791
+ C + + I +P++G + + T++++E
Sbjct: 61 LNNGSNIVIFNCST-AAENAIKWEVPIDGSIINPSSGLVMTAPRAASRTILLLEDNIYAA 119
Query: 792 DTSWDLVP 799
W +
Sbjct: 120 SQGWTVTN 127
Score = 36.5 bits (84), Expect = 0.022
Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 14/145 (9%)
Query: 665 QPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELV 724
Q W + N + ++CL S + + + ++ C+ S Q+W+ +
Sbjct: 121 QGW-TVTNNVKPIVASIVGYKEMCLQSN---GENNGVWMEDCEATSLQQQWALYGDRTIR 176
Query: 725 LAELLCLD------AGATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLE 778
+ L + KC SQ W F I +P + + +
Sbjct: 177 VNSTRGLCVTTNGYNSKDLIIILKCQG-LPSQRWFF--NSDGAIVNPKSRLVMDVRASNV 233
Query: 779 N-TVIVMEMCAQHKDTSWDLVPVGS 802
+ I++ + + W + S
Sbjct: 234 SLREIIIFPATGNPNQQWVTQVLPS 258
>3a21_A Putative secreted alpha-galactosidase; beta-alpha-barrel, greek KEY
motif, beta-jellyroll, beta-TRE hydrolase; HET: GOL 1PG
EPE; 1.51A {Streptomyces avermitilis} PDB: 3a22_A*
3a23_A*
Length = 614
Score = 41.3 bits (96), Expect = 0.001
Identities = 30/181 (16%), Positives = 52/181 (28%), Gaps = 19/181 (10%)
Query: 604 GATKPKLTKCHEMGGSQEYWCWLRCKSFK------WYLDNVYPEMILPSDDEDRLKKKWA 657
G + + ++ + ++ + + +
Sbjct: 411 GLNVVDVAYTNNTSSARTATLQVNGQTATTVSFPPTGASAGTVSVEVSLSKGSANTLALS 470
Query: 658 QVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLT-SKVDKTKGSPLVLKKCDELSKTQRWS 716
+ + + SG C T G+ L C+ Q W+
Sbjct: 471 GGPATEGITVRPLPGTNGALVTGKQSGR--CADIYNNTITNGTQAELWDCNG-GPNQSWT 527
Query: 717 KTDKSELVLAELLCLD------AGATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTC 770
T + ELVL CLD TK + C+ +Q+WN D T I + G C
Sbjct: 528 YTSRKELVLYGNKCLDAYNLGTTNGTKVVIWDCNG-QANQKWNIN-SDGT-ITNVNAGLC 584
Query: 771 L 771
L
Sbjct: 585 L 585
Score = 30.5 bits (68), Expect = 3.1
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 526 WAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLT-SKVDKTKGSPLVLKKCDELSKTQH 584
A P + R T+ + + C T G+ L C+ Q
Sbjct: 467 LALSGGPATEGITVRPLPGTNGALVTGKQSGRCADIYNNTITNGTQAELWDCNG-GPNQS 525
Query: 585 WSKTDKSELVLAELLCLD------AGATKPKLTKCHEMGGSQEYW 623
W+ T + ELVL CLD TK + C+ G + + W
Sbjct: 526 WTYTSRKELVLYGNKCLDAYNLGTTNGTKVVIWDCN--GQANQKW 568
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA);
glycosyltransferase, transferase; 1.50A {Bacillus
subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A*
1qgs_A*
Length = 255
Score = 40.1 bits (94), Expect = 0.002
Identities = 21/96 (21%), Positives = 39/96 (40%), Gaps = 18/96 (18%)
Query: 55 SVIICFYNEHPATLYRSVQTLLSRTGQSLLH-EIILVNDFSEYPSNLHGEVETFVKGLND 113
SVI+ YN + +S+ ++LS Q+ E+ +++D S + F LND
Sbjct: 4 SVIMTSYN-KSDYVAKSISSILS---QTFSDFELFIMDDNSN--EETLNVIRPF---LND 54
Query: 114 GRVHLYR--------TSKREGLIRARMFGAKYATGK 141
RV Y+ +++ + A G+
Sbjct: 55 NRVRFYQSDISGVKERTEKTRYAALINQAIEMAEGE 90
Score = 35.8 bits (83), Expect = 0.036
Identities = 10/80 (12%), Positives = 26/80 (32%), Gaps = 13/80 (16%)
Query: 144 IQSLLH------EIILVNDFSEYPSNLHGEVESF-----VKGLNNGRVHLYRTSKREGLI 192
I S+L E+ +++D S + F V+ + + +++
Sbjct: 20 ISSILSQTFSDFELFIMDDNSN--EETLNVIRPFLNDNRVRFYQSDISGVKERTEKTRYA 77
Query: 193 RARMFGAKYATGKVLVFLDS 212
+ A G+ + +
Sbjct: 78 ALINQAIEMAEGEYITYATD 97
>1ggp_B TKL-1, protein (lectin 1 B chain); sugar binding protein; 2.70A
{Trichosanthes kirilowii} SCOP: b.42.2.1 b.42.2.1
Length = 254
Score = 37.5 bits (86), Expect = 0.013
Identities = 37/258 (14%), Positives = 74/258 (28%), Gaps = 64/258 (24%)
Query: 557 LCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLDAGA---TKPKLTKC 613
C + G+ ++LKKC E + Q W+ ++ + CL A K + C
Sbjct: 14 FCADVNGEGQNGAAIILKKCAE-NDNQLWTLKREATIRSNGG-CLTTAAAEQAKAGIYDC 71
Query: 614 HEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARN 673
+ W
Sbjct: 72 TQATAELSAW-------------------------------------------------E 82
Query: 674 YTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAEL----- 728
+ I + L L+S L ++ + Q W +++ + ++
Sbjct: 83 IADNGTIINPASSLVLSSG-AANSLLDLGVQTNSY-ASAQGWRTGNETSASVTQISGSAQ 140
Query: 729 LCLDAGATKPK--LTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEM 786
LC+ AG +++C Q+W + + + CL S I++ +
Sbjct: 141 LCMQAGNGPANLWMSECRAGKAEQQWALLTDKSIRSET-NSDNCLTSAADAGPKTILLAL 199
Query: 787 CAQHKDTSWDLVPVGSLV 804
C+ W GS++
Sbjct: 200 CSGPASQRWVFDDDGSIL 217
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 37.2 bits (86), Expect = 0.031
Identities = 31/281 (11%), Positives = 64/281 (22%), Gaps = 85/281 (30%)
Query: 81 QSLLHEIILVNDFSEYPSNLHGEV-ETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYAT 139
+ ++ E+I+ D P E E F D E ++
Sbjct: 920 KEMIQEVIVEEDLE--PFEASKETAEQFKHQHGDKVDIFEIPETGEYSVK---------- 967
Query: 140 GKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARM--F 197
+ + + + G++ G N Y S I ++
Sbjct: 968 LLKGAT------LYIPKALRFDRLVAGQIP---TGWN---AKTYGISDDI--IS-QVDPI 1012
Query: 198 GAKYATGKVLV-----FLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTS 252
+ LV F+ S I E + + + +
Sbjct: 1013 -TLFV----LVSVVEAFIASGITD---PYEMYKYVHVSEVGNCSGSGMGGV--SALRGMF 1062
Query: 253 SALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFDSLGQYDA- 311
+ P D ++ TM+ + + S G
Sbjct: 1063 KDRFKDE------------PV-----QNDILQESFINTMSAWVNML---LISSSGPIKTP 1102
Query: 312 ------GLEIWGGENLELSFR--------IWMCGGSLAMIP 338
+ E++++ I + GG
Sbjct: 1103 VGACATSV-----ESVDIGVETILSGKARICIVGGYDDFQE 1138
>3bcv_A Putative glycosyltransferase protein; protein structure initiative
II, PSI-II NYSGXRC, structural genomics; 2.35A
{Bacteroides fragilis}
Length = 240
Score = 35.7 bits (83), Expect = 0.046
Identities = 29/178 (16%), Positives = 59/178 (33%), Gaps = 48/178 (26%)
Query: 144 IQSLLH------EIILVNDFS---------EYPSNLHGEVESFVKGLNNGRVHLYRTSKR 188
+Q+LL EIIL++D S +Y + + + K
Sbjct: 24 VQALLAQTLSDIEIILIDDESPDNCPKICDDYAAQ-------------YPNIKVIHK-KN 69
Query: 189 EGLIRARMFGAKYATGKVLVFLDS--HIEVNTHWLEPLLVPIAERTNTVTVPIIDIINAD 246
GL A G ATG+ + F DS +++ + + +A++ D +
Sbjct: 70 AGLGMACNSGLDVATGEYVAFCDSDDYVDSDM--YM-TMYNVAQKYTC------DAVFTG 120
Query: 247 TFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMAGGLFAIDRQYFD 304
+ T + + L +++ I +L +A +A + +
Sbjct: 121 LKRITM--------AGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIASDPYAREERAIQ 170
Score = 34.5 bits (80), Expect = 0.11
Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 30/98 (30%)
Query: 55 SVIICFYN-EHPATLYRSVQTLLSRTGQSLLH-EIILVNDFS---------EYPSNLHGE 103
SVI+ YN E L + VQ LL+ Q+L EIIL++D S +Y +
Sbjct: 8 SVIVPIYNVE--KYLDQCVQALLA---QTLSDIEIILIDDESPDNCPKICDDYAA----- 57
Query: 104 VETFVKGLNDGRVHLYRTSKREGLIRARMFGAKYATGK 141
+ + K GL A G ATG+
Sbjct: 58 --------QYPNIKVIHK-KNAGLGMACNSGLDVATGE 86
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 35.1 bits (80), Expect = 0.056
Identities = 4/50 (8%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
Query: 428 EERLKKKWAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPE 477
+ ++++W + + + W + + + + + F +Q
Sbjct: 105 SKVMEQEWREKAKKDLEEWN---QRQSEQVEKNKINNRIADKAFYQQPDA 151
Score = 31.7 bits (71), Expect = 0.77
Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 7/55 (12%)
Query: 428 EERLKKKWAQVEQPKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNID 482
+RL++ A + Q W +A+ W E K + R D
Sbjct: 95 RKRLQELDAA-SKVMEQEWREKAKKDLEE------WNQRQSEQVEKNKINNRIAD 142
>2ao3_A 29-kDa galactose-binding lectin; earthworm lumbricus terrestris,
hemagglutinin, R-type lectin, beta-trefoil fold, sugar
complex; HET: MGC; 1.80A {Lumbricus terrestris} PDB:
2d12_A* 2zqo_A* 2zqn_A* 2dry_A* 2drz_A* 2ds0_A*
Length = 130
Score = 32.5 bits (74), Expect = 0.22
Identities = 12/100 (12%), Positives = 26/100 (26%), Gaps = 6/100 (6%)
Query: 676 SHFHIRLSGTDLCLT-SKVDKTKGSPLVLKKCD--ELSKTQRWSKTDKSELVLAEL-LCL 731
F+I+ L + GS ++ + Q W + + +
Sbjct: 2 KFFYIKSELNGKVLDIEGQNPAPGSKIITWDQKKGPTAVNQLWYTDQQGVIRSKLNDFAI 61
Query: 732 DAGATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCL 771
DA + + + W ++ T L
Sbjct: 62 DASHEQIETQPFDPNNPKRAW--IVSGNTIAQLSDRDIVL 99
>1sr4_A CDT A, cytolethal distending toxin subunit A; bacterial, virulence,
DNA damage, genotoxin, cytotoxins, cell cycle,
apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP:
b.42.2.1 PDB: 2f2f_A
Length = 206
Score = 32.6 bits (73), Expect = 0.34
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 729 LCLDAGATKPKLTKCHEMGGSQEWNFVLRDKTP--IYSPATGTCLGSK--NRLENTVIVM 784
C++A C +QE+ + D I S + G C+ + + + +
Sbjct: 119 TCVEAYGNGLIHDICSLDKLAQEFELLPTDSGAVVIKSVSQGRCVTYNPVSTTFYSTVTL 178
Query: 785 EMCAQHK----DTSWDLVP 799
+C D +W L P
Sbjct: 179 SVCDGATEPSRDQTWYLAP 197
>3ckj_A Putative uncharacterized protein; mycobacteria, unknown function;
HET: CIT; 1.80A {Mycobacterium paratuberculosis} PDB:
3ckn_A* 3cko_A* 3ckq_A* 3ckv_A* 3e26_A 3e25_A
Length = 329
Score = 33.1 bits (75), Expect = 0.40
Identities = 30/180 (16%), Positives = 64/180 (35%), Gaps = 15/180 (8%)
Query: 141 KNRIQSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAK 200
+ L+ E+I+++ S + + + + L R G A
Sbjct: 71 SPLVDGLVDELIVLDSGST--DDTEIRAVAAGARVVSREQALPEVPIRPGKGEALWRSLA 128
Query: 201 YATGKVLVFLDS-HIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYTSSALVRGG 259
+ G ++VF+DS I + ++ L+ P+ + ++ + + + GG
Sbjct: 129 ASRGDIVVFVDSDLINPHPMFVPWLVGPLLTG------DGVHLVKSFYRRPLNVGDAGGG 182
Query: 260 FNWGLHFKWENLPKGTLNSSEDFIKPILSPT--MAGGLFAIDRQYFDSLG-QYDAGLEIW 316
+ L L ++ ++P L GG +A R+ S+ G+EI
Sbjct: 183 AGATGGGRVTELVARPLLAA---LRPELGCILQPLGGEYAATRELLTSVPFAPGYGVEIG 239
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 2.0
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 24/54 (44%)
Query: 386 EARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVE 439
E + + K+L+A L K Y D+ P + + A +E
Sbjct: 18 EKQAL--------KKLQASL-----KLYADDSAPALAIK-----------ATME 47
Score = 29.9 bits (66), Expect = 2.0
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 24/54 (44%)
Query: 477 EARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVE 530
E + + K+L+A L K Y D+ P + + A +E
Sbjct: 18 EKQAL--------KKLQASL-----KLYADDSAPALAIK-----------ATME 47
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown
function, uncharacterized protein; 1.50A {Vibrio
cholerae o1 biovar eltor str}
Length = 240
Score = 29.9 bits (67), Expect = 3.2
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
Query: 790 HKDTSWDLVPVGSLVEGEKTQVAHMEESIPNENK--GFRMLSKMGWKAGQTLGKDEANSA 847
H ++ P+ + K V + I + F + W G + ++ A +A
Sbjct: 174 HPKKEFNGKPMSEFLGESKINVDTHQVIINGKPYAVSFSDVEGEDWYVGVVIDEEIAYAA 233
Query: 848 A 848
Sbjct: 234 L 234
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme,
catalytic-site mutant, chemica hydrolase; 1.60A
{Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A
2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A*
1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A
Length = 436
Score = 30.0 bits (67), Expect = 4.1
Identities = 36/164 (21%), Positives = 56/164 (34%), Gaps = 12/164 (7%)
Query: 620 QEYWCWLRCKSF---KWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTS 676
+ RC + + P KK A S +
Sbjct: 252 NDCLAVSRCLGITVWGVRDTDSWRSGDTPLLFNGDGSKKAAYTAVLNALNGGSSTPPPSG 311
Query: 677 HFHIRLSGTDLCLTSK-VDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAG- 734
I+ G+ CL T G+ + L C + Q+W+ TD EL + CLDA
Sbjct: 312 GGQIKGVGSGRCLDVPNASTTDGTQVQLYDCHS-ATNQQWTYTDAGELRVYGDKCLDAAG 370
Query: 735 ---ATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKN 775
TK ++ C G +Q+W + D + I +G CL +
Sbjct: 371 TGNGTKVQIYSCWG-GDNQKWR-LNSDGS-IVGVQSGLCLDAVG 411
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM,
PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus
subtilis} PDB: 2pr6_A*
Length = 132
Score = 28.3 bits (64), Expect = 4.7
Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 18/61 (29%)
Query: 444 QPWYSRARNYT-------NSLRVAHVWMDEYIEHFLK-QRPEARNIDYGDVTDRKQLRAR 495
+P + +NY N L + + E +F+ Q D+T +K+
Sbjct: 71 EPVTVQIQNYKKDGTMFWNELNIDPME-IEDKTYFVGIQN---------DITKQKEYEKL 120
Query: 496 L 496
L
Sbjct: 121 L 121
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA
helicase, acetyltransferase, GCN5 acetyltransferase;
HET: ACO ADP; 2.35A {Escherichia coli K12}
Length = 671
Score = 29.6 bits (66), Expect = 5.0
Identities = 6/30 (20%), Positives = 11/30 (36%)
Query: 714 RWSKTDKSELVLAELLCLDAGATKPKLTKC 743
RW++ E +++E L D
Sbjct: 319 RWAQGCPLEKMVSEALVFDDENFTHTPQGN 348
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SG
structural genomics consortium, transferase; HET: A3P;
2.00A {Plasmodium yoelii yoelii}
Length = 163
Score = 28.6 bits (64), Expect = 6.2
Identities = 16/92 (17%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 103 EVETFVKGLNDGRVHLYRTSKREGLIR--ARMFGAKYA------TGKNRIQSL---LHEI 151
E+ F + ++++ + L ++ F AK A G + I +++I
Sbjct: 37 ELAEFETQKKKLNEKINKSNELKKLAIYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDI 96
Query: 152 ILVNDFSEYPS-NLHGEVESFVKGLNNGRVHL 182
+ ND P L+G+ + + ++ L
Sbjct: 97 EIKNDKYGKPHVYLYGKAKKVAYEMGIVKIFL 128
>2bdd_A ACP-synthase; structural genomics, structural genomics conso SGC,
transferase; 2.28A {Plasmodium yoelii yoelii}
Length = 182
Score = 28.3 bits (63), Expect = 7.4
Identities = 15/92 (16%), Positives = 36/92 (39%), Gaps = 12/92 (13%)
Query: 103 EVETFVKGLNDGRVHLYRTSKREGLIR--ARMFGAKYATGK---------NRIQSLLHEI 151
E+ F + ++++ + L ++ F AK A K ++ +++I
Sbjct: 56 ELAEFETQKKKLNEKINKSNELKKLAIYVSKKFAAKEAILKSMGRGLSSISKYGLSMNDI 115
Query: 152 ILVNDFSEYPS-NLHGEVESFVKGLNNGRVHL 182
+ ND P L+G+ + + ++ L
Sbjct: 116 EIKNDKYGKPHVYLYGKAKKVAYEMGIVKIFL 147
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 29.1 bits (66), Expect = 8.0
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 377 IEHFLKQRPEARN---IDYG---DVTD--RKQLRA--RLGCKSFKWYLDNVYPEMILPSD 426
++ FL+++ +A +D+ ++R G FK + P M
Sbjct: 103 LDAFLEKKKQAGQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVS 162
Query: 427 DEERLK 432
D E +
Sbjct: 163 DGELFE 168
Score = 29.1 bits (66), Expect = 8.0
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 468 IEHFLKQRPEARN---IDYG---DVTD--RKQLRA--RLGCKSFKWYLDNVYPEMILPSD 517
++ FL+++ +A +D+ ++R G FK + P M
Sbjct: 103 LDAFLEKKKQAGQRLKVDFALYGGGVPGNLPEIRKMHDAGAVGFKSMMAASVPGMFDAVS 162
Query: 518 DEERLK 523
D E +
Sbjct: 163 DGELFE 168
>1yy3_A S-adenosylmethionine:tRNA ribosyltransferase- isomerase;
beta-barrel, QUEA, quein queuosine, tRNA- modification;
2.88A {Bacillus subtilis}
Length = 346
Score = 28.6 bits (65), Expect = 8.3
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 13/48 (27%)
Query: 175 LNNGRVHLYRTSKREGLIRARMFGAKYATG-KVLVFLDSHIEVNTHWL 221
LNN RV + AR+FG K TG KV + L + W
Sbjct: 62 LNNTRV-----------LPARLFGTKEDTGAKVELLLLKQETGDK-WE 97
>3t50_A Blue-light-activated histidine kinase; PAS superfamily, blue-light
photoreceptor, FMN binding, TRAN; HET: FMN; 1.64A
{Brucella melitensis}
Length = 128
Score = 27.5 bits (62), Expect = 8.5
Identities = 15/79 (18%), Positives = 26/79 (32%), Gaps = 20/79 (25%)
Query: 427 DEERLKKKWAQVEQPKFQPWYSRARNYT-------NSLRVAHV-WMDEYIEHFLK-QRPE 477
D ++ + + +P NY N L ++ V + ++HF+ Q
Sbjct: 54 DPAHVRAIKSAIAAE--KPIDIDIINYKKSGEAFWNRLHISPVHNANGRLQHFVSSQL-- 109
Query: 478 ARNIDYGDVTDRKQLRARL 496
DVT R L
Sbjct: 110 -------DVTLELVPRGSL 121
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0822 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,385,287
Number of extensions: 806411
Number of successful extensions: 1729
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1641
Number of HSP's successfully gapped: 78
Length of query: 867
Length of database: 6,701,793
Length adjustment: 102
Effective length of query: 765
Effective length of database: 3,853,851
Effective search space: 2948196015
Effective search space used: 2948196015
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)