RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1765
(867 letters)
>d1xhba2 c.68.1.17 (A:95-422) Polypeptide
N-acetylgalactosaminyltransferase 1, N-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 328
Score = 218 bits (555), Expect = 1e-64
Identities = 134/277 (48%), Positives = 181/277 (65%), Gaps = 5/277 (1%)
Query: 147 LLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATGKV 206
++ EI+LV+D SE L +ES+VK L VH+ R +R GLIRAR+ GA + G+V
Sbjct: 53 MIEEIVLVDDASERDF-LKRPLESYVKKLKV-PVHVIRMEQRSGLIRARLKGAAVSRGQV 110
Query: 207 LVFLDSHIEVNTHWLEPLLVPIAERTNTVTVPIIDIINADTFQYT-SSALVRGGFNWGLH 265
+ FLD+H E WLEPLL I TV PIID+I+ DTF+Y S + GGFNW L+
Sbjct: 111 ITFLDAHCECTAGWLEPLLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLN 170
Query: 266 FKWENLPKGTLNSSE-DFIKPILSPTMAGGLFAIDRQYFDSLGQYDAGLEIWGGENLELS 324
F+W +P+ ++ + D P+ +PTMAGGLF+IDR YF +G YDAG++IWGGENLE+S
Sbjct: 171 FRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRDYFQEIGTYDAGMDIWGGENLEIS 230
Query: 325 FRIWMCGGSLAMIPCSRIGHVFRSRRPYNN-GHNEDPLTRNSLRVAHVWMDEYIEHFLKQ 383
FRIW CGG+L ++ CS +GHVFR PY G + +N+ R+A VWMDE+ F
Sbjct: 231 FRIWQCGGTLEIVTCSHVGHVFRKATPYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYII 290
Query: 384 RPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPE 420
P +DYGD++ R LR +L CK F WYL+N+YP+
Sbjct: 291 SPGVTKVDYGDISSRLGLRRKLQCKPFSWYLENIYPD 327
Score = 101 bits (253), Expect = 5e-24
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 441 PKFQPWYSRARNYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKS 500
P P + N+ R+A VWMDE+ F P +DYGD++ R LR +L CK
Sbjct: 257 PYTFPGGTGQIINKNNRRLAEVWMDEFKNFFYIISPGVTKVDYGDISSRLGLRRKLQCKP 316
Query: 501 FKWYLDNVYPE 511
F WYL+N+YP+
Sbjct: 317 FSWYLENIYPD 327
Score = 84.6 bits (208), Expect = 3e-18
Identities = 27/68 (39%), Positives = 46/68 (67%)
Query: 31 DRKIPDTRNSLCANQTFPSTLPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILV 90
+R +PD R C + +P LP+TSV+I F+NE +TL R+V ++++R+ + ++ EI+LV
Sbjct: 1 NRSLPDVRLEGCKTKVYPDNLPTTSVVIVFHNEAWSTLLRTVHSVINRSPRHMIEEIVLV 60
Query: 91 NDFSEYPS 98
+D SE
Sbjct: 61 DDASERDF 68
Score = 43.4 bits (101), Expect = 8e-05
Identities = 10/16 (62%), Positives = 14/16 (87%)
Query: 626 LRCKSFKWYLDNVYPE 641
L+CK F WYL+N+YP+
Sbjct: 312 LQCKPFSWYLENIYPD 327
>d2bo4a1 c.68.1.18 (A:2-382) Mannosylglycerate synthase, MGS
{Rhodothermus marinus [TaxId: 29549]}
Length = 381
Score = 142 bits (358), Expect = 3e-37
Identities = 47/443 (10%), Positives = 92/443 (20%), Gaps = 130/443 (29%)
Query: 54 TSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKGLND 113
+ V+ F +EHP L +V+ + +HE++ + +
Sbjct: 1 SLVVFPFKHEHPEVLLHNVRVAAA---HPRVHEVLCIGYERD------------------ 39
Query: 114 GRVHLYRTSKREGLIRARMFGAKYATGKNRIQSLLHEIILVNDFSEYPSNLHGEVESFVK 173
+ R + L E +
Sbjct: 40 ----------QTYEAVERAAPEISRATGTPVSVRLQERL--------------------- 68
Query: 174 GLNNGRVHLYRTSKREGLIRARMFGAKYATGKVLVFLDSHI-EVNTHWLEPLLVPIAERT 232
R K +G+ A + + + + F D+ I W+
Sbjct: 69 -------GTLRPGKGDGMNTALRYFLEETQWERIHFYDADITSFGPDWITKAEEAADFG- 120
Query: 233 NTVTVPIIDIINADTFQYTSSALVRGGFNWGLHFKWENLPKGTLNSSEDFIKPILSPTMA 292
Y A W + L + I P
Sbjct: 121 -----------YGLVRHYFPRASTDAMITWMITRTGFALLWPH-----TELSWIEQPL-- 162
Query: 293 GGLFAIDRQYFDSL-------GQYDAGLEIW-----------------GGENLELSFR-- 326
GG + R+ L + D G++ +
Sbjct: 163 GGELLMRREVAAMLYEDERVRRRSDWGIDTLYTFVTVQQGVSIYECYIPEGKAHRLYGGL 222
Query: 327 -------------IWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWM 373
I + P R P + +L
Sbjct: 223 DDLRTMLVECFAAIQSLQHEVVGQPAIHRQ-EHPHRVPVHIAERVGYDVEATLHRLMQHW 281
Query: 374 DEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKK 433
L+ + ++ A + + + E +
Sbjct: 282 TPRQVELLELFTTP---VREGLRTCQRRPA-FNFMDEMAWAATYHVLL-------EHFQP 330
Query: 434 KWAQVEQPKFQPWYSRARNYTNS 456
E+ F+ W +R NYT +
Sbjct: 331 GDPDWEELLFKLWTTRVLNYTMT 353
Score = 73.1 bits (179), Expect = 3e-14
Identities = 12/106 (11%), Positives = 26/106 (24%), Gaps = 11/106 (10%)
Query: 452 NYTNSLRVAHVWMDEYIEHFLKQRPEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPE 511
+ +L L+ + ++ A + +
Sbjct: 269 DVEATLHRLMQHWTPRQVELLELFTTP---VREGLRTCQRRPA-FNFMDEMAWAATYHVL 324
Query: 512 MILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDL 557
+ E + E+ F+ W +R NYT +R
Sbjct: 325 L-------EHFQPGDPDWEELLFKLWTTRVLNYTMTVALRGYDYAQ 363
Score = 47.3 bits (112), Expect = 5e-06
Identities = 10/83 (12%), Positives = 20/83 (24%), Gaps = 14/83 (16%)
Query: 605 ATKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQVEQPKF 664
+ L C + + + + + E+ F
Sbjct: 295 PVREGLRTCQRRPA-------FNFMDEMAWAATYHVLL-------EHFQPGDPDWEELLF 340
Query: 665 QPWYSRARNYTSHFHIRLSGTDL 687
+ W +R NYT +R
Sbjct: 341 KLWTTRVLNYTMTVALRGYDYAQ 363
>d1xhba1 b.42.2.1 (A:423-553) Polypeptide
N-acetylgalactosaminyltransferase 1, C-terminal domain
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 131
Score = 53.3 bits (127), Expect = 4e-09
Identities = 31/131 (23%), Positives = 52/131 (39%), Gaps = 5/131 (3%)
Query: 672 RNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCL 731
R+Y S IR T+ CL + + + + + C + Q +S T E+ + LCL
Sbjct: 4 RHYFSLGEIRNVETNQCLDNM-ARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDD-LCL 61
Query: 732 DA--GATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQ 789
D + KCH + G+Q W + K + + CL ++ V + C
Sbjct: 62 DVSKLNGPVTMLKCHHLKGNQLWEYD-PVKLTLQHVNSNQCLDKATEEDSQVPSIRDCTG 120
Query: 790 HKDTSWDLVPV 800
+ W L V
Sbjct: 121 SRSQQWLLRNV 131
Score = 38.7 bits (89), Expect = 6e-04
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 4/86 (4%)
Query: 542 RNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCL 601
R+Y S IR T+ CL + + + + + C + Q +S T E+ + LCL
Sbjct: 4 RHYFSLGEIRNVETNQCLDNM-ARKENEKVGIFNCHGMGGNQVFSYTANKEIRTDD-LCL 61
Query: 602 DA--GATKPKLTKCHEMGGSQEYWCW 625
D + KCH + G+Q +
Sbjct: 62 DVSKLNGPVTMLKCHHLKGNQLWEYD 87
>d1ggpb1 b.42.2.1 (B:11-140) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 126
Score = 47.1 bits (111), Expect = 5e-07
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 5/119 (4%)
Query: 680 IRLSGTD-LCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGA--T 736
+R++G D C + G+ ++LKKC E + Q W+ ++ + A A
Sbjct: 6 VRIAGRDGFCADVNGEGQNGAAIILKKCAE-NDNQLWTLKREATIRSNGGCLTTAAAEQA 64
Query: 737 KPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKDTSW 795
K + C + ++ + + D I +PA+ L S + ++ + W
Sbjct: 65 KAGIYDCTQ-ATAELSAWEIADNGTIINPASSLVLSSGAANSLLDLGVQTNSYASAQGW 122
>d1m2tb2 b.42.2.1 (B:385-510) Plant cytotoxin B-chain (lectin)
{European mistletoe (Viscum album) [TaxId: 3972]}
Length = 126
Score = 39.4 bits (91), Expect = 3e-04
Identities = 23/133 (17%), Positives = 46/133 (34%), Gaps = 15/133 (11%)
Query: 675 TSHFHIRLSG-TDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCL-- 731
T+ + G DLC+ + G + ++ C + QRW+ + +L
Sbjct: 1 TAPRETTIYGFRDLCME-----SAGGSVYVETCTAGQENQRWALYGDGSIRPKQLQSQCL 55
Query: 732 ----DAGATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLEN-TVIVMEM 786
D+ +T + C Q W F ++ I + G + + I++
Sbjct: 56 TNGRDSISTVINIVSCSAGSSGQRWVF--TNEGAILNLKNGLAMDVAQANPSLQRIIIYP 113
Query: 787 CAQHKDTSWDLVP 799
+ + W VP
Sbjct: 114 ATGNPNQMWLPVP 126
Score = 34.4 bits (78), Expect = 0.013
Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 729 LCLDAGATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCA 788
LC+++ + C +Q W D + CL + +TVI + C+
Sbjct: 14 LCMESAGGSVYVETCTAGQENQRWALY-GDGSIRPKQLQSQCLTNGRDSISTVINIVSCS 72
Query: 789 Q-HKDTSWDLVPVGSLVEGEKTQVAHMEESIPN 820
W G+++ + + ++ P+
Sbjct: 73 AGSSGQRWVFTNEGAILNLKNGLAMDVAQANPS 105
Score = 34.0 bits (77), Expect = 0.017
Identities = 13/123 (10%), Positives = 28/123 (22%), Gaps = 20/123 (16%)
Query: 599 LCLDAGATKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKWAQ 658
LC+++ + C +Q + Y D I P + +
Sbjct: 14 LCMESAGGSVYVETCTAGQENQRWA---------LYGDG----SIRPKQLQSQCLTNGRD 60
Query: 659 VEQPKFQPWYSRARNYTSHFHIRLSG------TDLCLTSKVDKTKGSPLVLKKCDELSKT 712
A + + G L + +++ +
Sbjct: 61 SISTVINIVSCSAGSSGQRWVFTNEGAILNLKNGLAMDVAQANPSLQRIIIYPATG-NPN 119
Query: 713 QRW 715
Q W
Sbjct: 120 QMW 122
Score = 27.5 bits (60), Expect = 3.8
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 12/76 (15%)
Query: 556 DLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCL------DAGATKPK 609
DLC+ + G + ++ C + Q W+ + +L D+ +T
Sbjct: 13 DLCME-----SAGGSVYVETCTAGQENQRWALYGDGSIRPKQLQSQCLTNGRDSISTVIN 67
Query: 610 LTKCHEMGGSQEYWCW 625
+ C G S + W +
Sbjct: 68 IVSCS-AGSSGQRWVF 82
>d1dqga_ b.42.2.2 (A:) Mannose receptor {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 134
Score = 39.1 bits (90), Expect = 4e-04
Identities = 21/126 (16%), Positives = 38/126 (30%), Gaps = 13/126 (10%)
Query: 675 TSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKT-DKSELVLAELLCLDA 733
F I C+ D + C+ +++Q++ D + +A LCL
Sbjct: 2 ARQFLIYNEDHKRCV----DALSAISVQTATCNPEAESQKFRWVSDSQIMSVAFKLCLGV 57
Query: 734 GA----TKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQ 789
+ L C Q+W ++ T T NR E + +
Sbjct: 58 PSKTDWASVTLYACDSKSEYQKW--ECKNDTLFGIKGTELYFNYGNRQEKNIKL--YKGS 113
Query: 790 HKDTSW 795
+ W
Sbjct: 114 GLWSRW 119
Score = 36.0 bits (82), Expect = 0.004
Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 665 QPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELV 724
S+ + S I LCL KT + + L CD S+ Q+W + +
Sbjct: 31 PEAESQKFRWVSDSQIMSVAFKLCLGVP-SKTDWASVTLYACDSKSEYQKWECKNDTLFG 89
Query: 725 LAELLCLDA--GATKPKLTKCHEMGGSQEWN 753
+ + + G W
Sbjct: 90 IKGTELYFNYGNRQEKNIKLYKGSGLWSRWK 120
Score = 30.2 bits (67), Expect = 0.43
Identities = 15/90 (16%), Positives = 27/90 (30%), Gaps = 3/90 (3%)
Query: 535 QPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELV 594
S+ + S I + LCL KT + + L CD S+ Q W + +
Sbjct: 31 PEAESQKFRWVSDSQIMSVAFKLCLGVP-SKTDWASVTLYACDSKSEYQKWECKNDTLFG 89
Query: 595 LAELLCLDA--GATKPKLTKCHEMGGSQEY 622
+ + + G +
Sbjct: 90 IKGTELYFNYGNRQEKNIKLYKGSGLWSRW 119
>d2aaib2 b.42.2.1 (B:136-262) Plant cytotoxin B-chain (lectin)
{Castor bean (Ricinus communis), Ricin [TaxId: 3988]}
Length = 127
Score = 36.8 bits (84), Expect = 0.002
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 14/117 (11%)
Query: 686 DLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLD------AGATKPK 739
LCL + ++ C Q+W+ + + T K
Sbjct: 14 GLCLQ-----ANSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDSNIRETVVK 68
Query: 740 LTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLEN-TVIVMEMCAQHKDTSW 795
+ C Q W F ++ I + +G L + + I++ + W
Sbjct: 69 ILSCGPASSGQRWMF--KNDGTILNLYSGLVLDVRASDPSLKQIILYPLHGDPNQIW 123
Score = 34.5 bits (78), Expect = 0.014
Identities = 14/121 (11%), Positives = 31/121 (25%), Gaps = 16/121 (13%)
Query: 599 LCLDAGATKPKLTKCHEMGGSQEYW----CWLRCKSFKWYLDNVYPEMILPSDDEDRLKK 654
LCL A + + + C Q++ +R + + D +
Sbjct: 15 LCLQANSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDN-----------CLTSDSNIR 63
Query: 655 KWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQR 714
+ + + + I + L L + ++L Q
Sbjct: 64 ETVVKILSCGPASSGQRWMFKNDGTILNLYSGLVLDVRASDPSLKQIILYPLHG-DPNQI 122
Query: 715 W 715
W
Sbjct: 123 W 123
Score = 33.7 bits (76), Expect = 0.029
Identities = 12/91 (13%), Positives = 21/91 (23%), Gaps = 15/91 (16%)
Query: 556 DLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLD------AGATKPK 609
LCL + ++ C Q W+ + + T K
Sbjct: 14 GLCLQ-----ANSGQVWIEDCSSEKAEQQWALYADGSIRPQQNRDNCLTSDSNIRETVVK 68
Query: 610 LTKCHEMGGSQEYWC----WLRCKSFKWYLD 636
+ C Q + + LD
Sbjct: 69 ILSCGPASSGQRWMFKNDGTILNLYSGLVLD 99
Score = 31.8 bits (71), Expect = 0.12
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 729 LCLDAGATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCA 788
LCL A + + + C Q+W D + CL S + + TV+ + C
Sbjct: 15 LCLQANSGQVWIEDCSSEKAEQQWALY-ADGSIRPQQNRDNCLTSDSNIRETVVKILSCG 73
Query: 789 QHKDTSWDLVP 799
+
Sbjct: 74 PASSGQRWMFK 84
>d1abrb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Abrus precatorius [TaxId: 3816]}
Length = 127
Score = 36.1 bits (82), Expect = 0.004
Identities = 15/121 (12%), Positives = 31/121 (25%), Gaps = 16/121 (13%)
Query: 599 LCLDAGATKPKLTKCHEMGGSQEYWCW----LRCKSFKWYLDNVYPEMILPSDDEDRLKK 654
LC+ A + + C Q++ + +R K+
Sbjct: 15 LCMQAQGSNVWMADCDSNKKEQQWALYTDGSIRSVQNTNN-----------CLTSKDHKQ 63
Query: 655 KWAQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQR 714
+ W S+ + + I D+ + K ++L Q
Sbjct: 64 GSTILLMGCSNGWASQRWVFKNDGSIYSLYDDMVMDVKGSDPSLKQIILWPYTG-KPNQI 122
Query: 715 W 715
W
Sbjct: 123 W 123
Score = 34.1 bits (77), Expect = 0.019
Identities = 26/127 (20%), Positives = 46/127 (36%), Gaps = 11/127 (8%)
Query: 675 TSHFHIRLSG-TDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSEL--VLAELLCL 731
TS F +SG +DLC+ ++ GS + + CD K Q+W+ + V CL
Sbjct: 2 TSPFVTSISGYSDLCMQAQ-----GSNVWMADCDSNKKEQQWALYTDGSIRSVQNTNNCL 56
Query: 732 DAG--ATKPKLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLEN-TVIVMEMCA 788
+ + G +V ++ IYS + K + I++
Sbjct: 57 TSKDHKQGSTILLMGCSNGWASQRWVFKNDGSIYSLYDDMVMDVKGSDPSLKQIILWPYT 116
Query: 789 QHKDTSW 795
+ W
Sbjct: 117 GKPNQIW 123
Score = 28.7 bits (63), Expect = 1.4
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 16/95 (16%)
Query: 556 DLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSEL--VLAELLCLDA----GATKPK 609
DLC+ ++ GS + + CD K Q W+ + V CL + +
Sbjct: 14 DLCMQAQ-----GSNVWMADCDSNKKEQQWALYTDGSIRSVQNTNNCLTSKDHKQGSTIL 68
Query: 610 LTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMIL 644
L C G + + W + + ++Y +M++
Sbjct: 69 LMGCS-NGWASQRWVFKNDG----SIYSLYDDMVM 98
>d1hwmb2 b.42.2.1 (B:136-266) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 131
Score = 35.6 bits (81), Expect = 0.006
Identities = 13/120 (10%), Positives = 42/120 (35%), Gaps = 10/120 (8%)
Query: 686 DLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGATKP----KLT 741
++CL + + + + ++ CD S Q+W+ D + + L + +
Sbjct: 14 EMCLQANGE---NNNVWMEDCDVTSVQQQWALFDDRTIRVNNSRGLCVTSNGYVSKDLIV 70
Query: 742 KCHEMGGSQEWNFVLRDKTPIYSPATGTCLG-SKNRLENTVIVMEMCAQHKDTSWDL-VP 799
G + + + + + + + ++ + +++ + + W VP
Sbjct: 71 IRKCQGLATQR-WFFNSDGSVVNLKSTRVMDVKESDVSLQEVIIFPATGNPNQQWRTQVP 129
Score = 34.9 bits (79), Expect = 0.012
Identities = 11/119 (9%), Positives = 29/119 (24%), Gaps = 11/119 (9%)
Query: 599 LCLDA--GATKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEMILPSDDEDRLKKKW 656
+CL A + C Q++ + +
Sbjct: 15 MCLQANGENNNVWMEDCDVTSVQQQWA--------LFDDRTIRVNNSRGLCVTSNGYVSK 66
Query: 657 AQVEQPKFQPWYSRARNYTSHFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRW 715
+ K Q ++ + S + + + K +++ + Q+W
Sbjct: 67 DLIVIRKCQGLATQRWFFNSDGSVVNLKSTRVMDVKESDVSLQEVIIFPATG-NPNQQW 124
Score = 29.1 bits (64), Expect = 0.93
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 7/74 (9%)
Query: 556 DLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLDAGATKP----KLT 611
++CL + + + + ++ CD S Q W+ D + + L + +
Sbjct: 14 EMCLQANGE---NNNVWMEDCDVTSVQQQWALFDDRTIRVNNSRGLCVTSNGYVSKDLIV 70
Query: 612 KCHEMGGSQEYWCW 625
G + + W +
Sbjct: 71 IRKCQGLATQRWFF 84
Score = 27.9 bits (61), Expect = 3.0
Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 1/59 (1%)
Query: 527 AQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTSKVDKTKGSPLVLKKCDELSKTQHW 585
+ K Q ++ + S + + + K +++ + Q W
Sbjct: 67 DLIVIRKCQGLATQRWFFNSDGSVVNLKSTRVMDVKESDVSLQEVIIFPATG-NPNQQW 124
>d1vcla1 b.42.2.1 (A:1-150) Hemolytic lectin CEL-III, domains 1 and
2 {Cucumaria echinata [TaxId: 40245]}
Length = 150
Score = 35.3 bits (80), Expect = 0.010
Identities = 22/139 (15%), Positives = 35/139 (25%), Gaps = 18/139 (12%)
Query: 680 IRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGATKPK 739
+R + C+ + CD LS Q D + A C +
Sbjct: 13 LRSFKSKQCVDIV-GNQGSGNIATYDCDGLSDQQIIICGDGTIRNEARNYCFTPDGSGNA 71
Query: 740 ----LTKCHEMGGS--QEWNFV-----------LRDKTPIYSPATGTCLGSKNRLENTVI 782
Q W + T I + A+G CL + I
Sbjct: 72 NVMSSPCTLYPEIPSSQRWRQGRRKTFTDNGGIEQVATEIINLASGKCLDIEGSDGTGDI 131
Query: 783 VMEMCAQHKDTSWDLVPVG 801
+ C D + + G
Sbjct: 132 GVYDCQNLDDQYFYVRSRG 150
>d1m2tb1 b.42.2.1 (B:249-384) Plant cytotoxin B-chain (lectin)
{European mistletoe (Viscum album) [TaxId: 3972]}
Length = 136
Score = 35.2 bits (80), Expect = 0.010
Identities = 14/122 (11%), Positives = 39/122 (31%), Gaps = 7/122 (5%)
Query: 680 IRLSGTD-LCL-TSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGATK 737
+R+ G + + + D G+ + L + + K + + CL
Sbjct: 11 VRIVGRNGMTVDVRDDDFHDGNQIQLWPSKSNNDPNQLWTIKKDGTIRSNGSCLTTYGYT 70
Query: 738 P----KLTKCHEMGGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKDT 793
+ C+ + + + I +P + L + + ++ T + ++
Sbjct: 71 AGVYVMIFDCNT-AVREATIWQIWGNGTIINPRSNLVLAASSGIKGTTLTVQTLDYTLGQ 129
Query: 794 SW 795
W
Sbjct: 130 GW 131
>d1omza_ c.68.1.15 (A:) Alpha-1,4-N-acetylhexosaminyltransferase
(Alpha-GalNAcT EXTL2) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 265
Score = 35.4 bits (80), Expect = 0.020
Identities = 10/81 (12%), Positives = 24/81 (29%), Gaps = 5/81 (6%)
Query: 145 QSLLHEIILVNDFSEYPSNLHGEVESFVKGLNNGRVHLYRTSKREGLIRARMFGAKYATG 204
LH++I+V + E L + + + +R R+
Sbjct: 28 VPSLHKVIVVWNNVGEKG-----PEELWNSLGPHPIPVIFKPQTANKMRNRLQVFPEVET 82
Query: 205 KVLVFLDSHIEVNTHWLEPLL 225
++ +D ++ L
Sbjct: 83 NAVLMVDDDTLISAQDLVFAF 103
Score = 35.0 bits (79), Expect = 0.028
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 9/91 (9%)
Query: 51 LPSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFSEYPSNLHGEVETFVKG 110
L S ++I+ YN L R + + LH++I+V + E
Sbjct: 2 LDSFTLIMQTYNR-TDLLLRLLNHYQA---VPSLHKVIVVWNNVGEKG-----PEELWNS 52
Query: 111 LNDGRVHLYRTSKREGLIRARMFGAKYATGK 141
L + + + +R R+
Sbjct: 53 LGPHPIPVIFKPQTANKMRNRLQVFPEVETN 83
>d1qg8a_ c.68.1.1 (A:) Spore coat polysaccharide biosynthesis
protein SpsA {Bacillus subtilis [TaxId: 1423]}
Length = 255
Score = 35.1 bits (79), Expect = 0.027
Identities = 13/43 (30%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Query: 52 PSTSVIICFYNEHPATLYRSVQTLLSRTGQSLLHEIILVNDFS 94
P SVI+ YN+ + +S+ ++LS+T E+ +++D S
Sbjct: 1 PKVSVIMTSYNK-SDYVAKSISSILSQTFSDF--ELFIMDDNS 40
>d1hwmb1 b.42.2.1 (B:3-135) Plant cytotoxin B-chain (lectin)
{Sambucus ebulus, ebulin [TaxId: 28503]}
Length = 133
Score = 32.6 bits (73), Expect = 0.069
Identities = 19/124 (15%), Positives = 41/124 (33%), Gaps = 5/124 (4%)
Query: 678 FHIRLSG-TDLCL-TSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGA 735
F R+ G LC+ T G+P+ L C + Q+W+ + + G
Sbjct: 9 FTRRIVGRDGLCVDVRNGYDTDGTPIQLWPCGT-QRNQQWTFYNDKTIRSMGKCMTANGL 67
Query: 736 TKPKLTKCHEM--GGSQEWNFVLRDKTPIYSPATGTCLGSKNRLENTVIVMEMCAQHKDT 793
+ + + I +P++G + + + T +++E
Sbjct: 68 NSGSYIMITDCSTAAEDATKWEVLIDGSIINPSSGLVMTAPSGASRTTLLLENNIHAASQ 127
Query: 794 SWDL 797
W +
Sbjct: 128 GWTV 131
>d1vcla2 b.42.2.1 (A:151-283) Hemolytic lectin CEL-III, domains 1
and 2 {Cucumaria echinata [TaxId: 40245]}
Length = 133
Score = 30.7 bits (68), Expect = 0.28
Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 8/129 (6%)
Query: 677 HFHIRLSGTDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVLAELLCLDAGAT 736
+ +R +DLCL + +++ C++ + + +CLD +
Sbjct: 5 YGRLRNEKSDLCLDVE-GSDGKGNVLMYSCEDNLDQWFRYYENGEIVNAKSGMCLDVEGS 63
Query: 737 KP--KLTKCHEMGGSQEWNFVLRDKT-----PIYSPATGTCLGSKNRLENTVIVMEMCAQ 789
+ + + + CL + C
Sbjct: 64 DGSGNVGIYRCDDLRDQMWSRPNAYCNGDYCSFLNKESNKCLDVSGDQGTGDVGTWQCDG 123
Query: 790 HKDTSWDLV 798
D + V
Sbjct: 124 LPDQRFKWV 132
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 237
Score = 31.2 bits (69), Expect = 0.39
Identities = 26/191 (13%), Positives = 51/191 (26%), Gaps = 8/191 (4%)
Query: 386 EARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQP 445
R G Q ++ +++ + + + +R K A K Q
Sbjct: 27 LKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQY 86
Query: 446 WYSRARNYTNSLRVAHVWMDEYIEHFLK---QRPEARNIDYGD-VTDRKQLRARLGCKSF 501
+ A + V ++ L R + G VT+ + +
Sbjct: 87 ADANAAYLQSKAAVEQARINLRYTKVLSPISGRIGRSAVTEGALVTNGQANAMATVQQLD 146
Query: 502 KWYLDNVYPEMILPSDDEERLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSSTDLCLTS 561
Y+D P L E + + + RL ++
Sbjct: 147 PIYVDVTQPSTALLRLRRELASGQLERAGDNAAKVSLKLEDGSQYPLEGRLEFSE----V 202
Query: 562 KVDKTKGSPLV 572
VD+ GS +
Sbjct: 203 SVDEGTGSVTI 213
>d1ggpb2 b.42.2.1 (B:141-267) Plant cytotoxin B-chain (lectin)
{Mongolian snake-gourd (Trichosanthes kirilowii), Lectin
1 [TaxId: 3677]}
Length = 128
Score = 28.3 bits (62), Expect = 1.8
Identities = 9/74 (12%), Positives = 20/74 (27%), Gaps = 7/74 (9%)
Query: 556 DLCLTSKVDKTKGSPLVLKKCDELSKTQHWSKTDKSELVLAELLCLDA----GATKPKLT 611
LC+ + + L + +C Q W+ + A +
Sbjct: 14 QLCMQAGNG---PANLWMSECRAGKAEQQWALLTDKSIRSETNSDNCLTSAADAGPKTIL 70
Query: 612 KCHEMGGSQEYWCW 625
G + + W +
Sbjct: 71 LALCSGPASQRWVF 84
Score = 28.3 bits (62), Expect = 2.0
Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 9/86 (10%)
Query: 675 TSHFHIRLSG-TDLCLTSKVDKTKGSPLVLKKCDELSKTQRWSKTDKSELVL--AELLCL 731
TS ++SG LC+ + + L + +C Q+W+ + CL
Sbjct: 2 TSASVTQISGSAQLCMQAGNG---PANLWMSECRAGKAEQQWALLTDKSIRSETNSDNCL 58
Query: 732 DAGATKPK---LTKCHEMGGSQEWNF 754
+ A L SQ W F
Sbjct: 59 TSAADAGPKTILLALCSGPASQRWVF 84
>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium
carotovorum [TaxId: 554]}
Length = 296
Score = 28.8 bits (63), Expect = 3.1
Identities = 17/152 (11%), Positives = 39/152 (25%), Gaps = 4/152 (2%)
Query: 325 FRIWMCGGSLAMIPCSRIGHVFRSRRPYNNGHNEDPLTRNSLRVAHVWMDEYIEHFLKQR 384
M G + + G + + N + + + R
Sbjct: 132 QVSCMLTGYGSDLLFG--GILKPGAQYDNPNQLLAEQVYRTRWTGEFATHGASCYGIDIR 189
Query: 385 PEARNIDYGDVTDRKQLRARLGCKSFKWYLDNVYPEM-ILPSDDEERLKKKWAQVEQPKF 443
+ + ++ K L + +LP D R KK
Sbjct: 190 HPFWSHSLISLCHALHPDYKIFDNEVKNILREYADSLQLLPKDIVWR-KKIGIHEGSSVN 248
Query: 444 QPWYSRARNYTNSLRVAHVWMDEYIEHFLKQR 475
Q + + + ++ + + + FL+ R
Sbjct: 249 QAFANVLGSTVDNYQTKSRFTYRVYQAFLRGR 280
>d1ktga_ d.113.1.1 (A:) Diadenosine tetraphosphate hydrolase (Ap4A
hydrolase) {Caenorhabditis elegans [TaxId: 6239]}
Length = 137
Score = 27.2 bits (59), Expect = 4.6
Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 1/102 (0%)
Query: 583 QHWSKTDKSELVLAELLCLDAGATKPKLTKCHEMGGSQEYWCWLRCKSFKWYLDNVYPEM 642
H + +A TK +LT + + Y + KS K++L +
Sbjct: 36 GHVDPGEDEWQAAIRETKEEANITKEQLTIHEDCHETLFYEAKGKPKSVKYWLAKLNNPD 95
Query: 643 ILPSDDEDRLKKKWAQVEQPKFQPWYSRARNYTSHFHIRLSG 684
+ E + KW ++E Y+ + F L+G
Sbjct: 96 DVQLSHEHQ-NWKWCELEDAIKIADYAEMGSLLRKFSAFLAG 136
>d1foea2 b.55.1.1 (A:1240-1401) GEF of TIAM1 (T-Lymphoma invasion
and metastasis inducing protein 1) {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 162
Score = 27.1 bits (60), Expect = 6.6
Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 19/101 (18%)
Query: 728 LLCLDAGATKPKLTKCHEMGGSQEWN-FVLRDKTPIYSPATGTCLGSKNRLENTVIVMEM 786
L+ D K KL H + +EW+ F R P + V +
Sbjct: 63 LVYKDGSKQKKKLVGSHRLSIYEEWDPFRFRHMIPT----------------EALQVRAL 106
Query: 787 CAQHKDTS--WDLVPVGSLVEGEKTQVAHMEESIPNENKGF 825
+ + + ++V V S EG +V H+ S P K F
Sbjct: 107 PSADAEANAVCEIVHVKSESEGRPERVFHLCCSSPESRKDF 147
>d1knma_ b.42.2.1 (A:) Xylan binding domain, CBM13
(Endo-1,4-beta-xylanase C-terminal domain) {Streptomyces
lividans [TaxId: 1916]}
Length = 129
Score = 26.1 bits (56), Expect = 9.9
Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 672 RNYTSHFHIRLSGTDLCLTSKVDKT-KGSPLVLKKCDELSKTQRWSKT 718
S + + LCL + + T G+ + L C QRW++T
Sbjct: 83 WRLNSDGSVVGVQSGLCLDAVGNGTANGTLIQLYTCSN-GSNQRWTRT 129
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.135 0.420
Gapped
Lambda K H
0.267 0.0572 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,348,805
Number of extensions: 162223
Number of successful extensions: 388
Number of sequences better than 10.0: 1
Number of HSP's gapped: 375
Number of HSP's successfully gapped: 49
Length of query: 867
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 774
Effective length of database: 1,130,706
Effective search space: 875166444
Effective search space used: 875166444
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.1 bits)