BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17650
         (396 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V0O|A Chain A, Fcho2 F-Bar Domain
 pdb|2V0O|B Chain B, Fcho2 F-Bar Domain
 pdb|2V0O|C Chain C, Fcho2 F-Bar Domain
          Length = 276

 Score =  143 bits (360), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 79/171 (46%), Positives = 113/171 (66%), Gaps = 4/171 (2%)

Query: 1   ANIEENNSKLFGKLAKQSGGS---GTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVC 57
           A IEE  S+   KLAK +      GTFAP+W V KTS EK+A   + +++K+ +L+K+V 
Sbjct: 45  ATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQ 104

Query: 58  KYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKD 117
           KY EE  K HK  KEE   TLE VQTIQS T  LQK+K+ Y  KC E ++L+++  + ++
Sbjct: 105 KYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQRE 164

Query: 118 LEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMS-TSCKIRNDDRDHKIHV 167
           +EKA +K KKA + YK  V+KYAL K DFE++M+ T+ K ++ +  H IH+
Sbjct: 165 IEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHI 215


>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
           With Argyrin B
          Length = 709

 Score = 30.0 bits (66), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   IEENNSKLFGKLAKQSGGSGTFAPLW 28
           I ++N ++ GK  +QSGG G F   W
Sbjct: 497 ITKDNVEIEGKFVRQSGGRGQFGHCW 522


>pdb|2HTV|A Chain A, N4 Neuraminidase
 pdb|2HTV|B Chain B, N4 Neuraminidase
 pdb|2HTW|A Chain A, N4 Neuraminidase In Complex With Dana
          Length = 390

 Score = 28.5 bits (62), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 22/43 (51%)

Query: 287 PLNSTLTRSESEFKTSGVSTTNSSRGPSPLTIGMSDTIPLAVA 329
           P+    + S S F++   S T  S GP  LTIG++     AVA
Sbjct: 81  PIGVAPSPSNSRFESVAWSATACSDGPGWLTIGITGPDATAVA 123


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.127    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,794,302
Number of Sequences: 62578
Number of extensions: 426704
Number of successful extensions: 857
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 849
Number of HSP's gapped (non-prelim): 33
length of query: 396
length of database: 14,973,337
effective HSP length: 101
effective length of query: 295
effective length of database: 8,652,959
effective search space: 2552622905
effective search space used: 2552622905
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 52 (24.6 bits)