Query psy17650
Match_columns 396
No_of_seqs 184 out of 308
Neff 5.5
Searched_HMMs 46136
Date Fri Aug 16 19:30:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2398|consensus 100.0 9.5E-48 2.1E-52 406.9 30.2 197 1-198 19-228 (611)
2 cd07673 F-BAR_FCHO2 The F-BAR 100.0 8.8E-41 1.9E-45 324.8 20.6 198 1-199 39-247 (269)
3 cd07674 F-BAR_FCHO1 The F-BAR 100.0 2.1E-38 4.6E-43 306.5 20.8 198 1-199 32-240 (261)
4 cd07648 F-BAR_FCHO The F-BAR ( 100.0 3.9E-38 8.5E-43 303.8 21.3 199 1-200 32-241 (261)
5 cd07671 F-BAR_PSTPIP1 The F-BA 100.0 1.5E-36 3.2E-41 291.2 20.1 187 1-191 32-242 (242)
6 cd07672 F-BAR_PSTPIP2 The F-BA 100.0 5.3E-36 1.1E-40 287.0 19.8 184 1-188 32-240 (240)
7 cd07679 F-BAR_PACSIN2 The F-BA 100.0 1.3E-35 2.9E-40 285.1 20.6 190 1-191 32-258 (258)
8 cd07649 F-BAR_GAS7 The F-BAR ( 100.0 2.4E-34 5.2E-39 274.5 22.5 170 1-174 32-211 (233)
9 cd07681 F-BAR_PACSIN3 The F-BA 100.0 7.4E-34 1.6E-38 274.1 20.7 188 1-191 32-258 (258)
10 cd07647 F-BAR_PSTPIP The F-BAR 100.0 1.5E-33 3.2E-38 269.4 19.4 184 1-188 32-239 (239)
11 cd07651 F-BAR_PombeCdc15_like 100.0 6.5E-32 1.4E-36 257.2 19.5 183 1-187 32-235 (236)
12 cd07680 F-BAR_PACSIN1 The F-BA 100.0 2.4E-31 5.2E-36 257.0 21.6 190 1-191 32-258 (258)
13 cd07658 F-BAR_NOSTRIN The F-BA 100.0 3.4E-30 7.4E-35 246.7 19.4 169 1-173 32-234 (239)
14 cd07655 F-BAR_PACSIN The F-BAR 100.0 1.1E-29 2.4E-34 245.4 20.2 189 1-190 32-257 (258)
15 KOG2856|consensus 100.0 6.6E-30 1.4E-34 251.9 18.0 198 1-198 41-274 (472)
16 cd07653 F-BAR_CIP4-like The F- 99.9 1E-22 2.2E-27 194.7 20.1 184 1-188 32-248 (251)
17 cd07650 F-BAR_Syp1p_like The F 99.9 7.5E-22 1.6E-26 187.9 15.0 169 1-199 32-215 (228)
18 cd07676 F-BAR_FBP17 The F-BAR 99.8 6.7E-20 1.4E-24 177.2 20.1 170 1-174 32-228 (253)
19 cd07652 F-BAR_Rgd1 The F-BAR ( 99.8 1.3E-18 2.8E-23 166.4 20.3 161 1-164 32-214 (234)
20 cd07610 FCH_F-BAR The Extended 99.8 2.1E-18 4.6E-23 157.5 14.5 137 1-174 27-169 (191)
21 cd07675 F-BAR_FNBP1L The F-BAR 99.7 1.6E-15 3.5E-20 146.5 19.7 170 1-174 32-227 (252)
22 cd07657 F-BAR_Fes_Fer The F-BA 99.5 1.3E-12 2.8E-17 125.5 22.4 163 1-166 32-219 (237)
23 PF10291 muHD: Muniscin C-term 99.5 3.2E-16 6.9E-21 152.0 -4.0 67 324-395 1-67 (257)
24 cd07686 F-BAR_Fer The F-BAR (F 99.4 4.8E-11 1E-15 114.4 18.9 169 1-173 32-222 (234)
25 cd07656 F-BAR_srGAP The F-BAR 99.3 1.6E-10 3.4E-15 111.4 19.1 106 1-109 32-151 (241)
26 cd07654 F-BAR_FCHSD The F-BAR 99.1 6.3E-09 1.4E-13 101.7 18.2 143 1-146 32-214 (264)
27 cd07677 F-BAR_FCHSD2 The F-BAR 98.9 1.5E-07 3.4E-12 91.4 17.6 140 1-146 21-210 (260)
28 cd07685 F-BAR_Fes The F-BAR (F 98.8 3.7E-07 8.1E-12 87.3 17.5 163 2-166 33-219 (237)
29 cd07678 F-BAR_FCHSD1 The F-BAR 98.7 9.2E-07 2E-11 86.5 19.0 141 1-146 32-213 (263)
30 cd07683 F-BAR_srGAP1 The F-BAR 98.7 2E-06 4.3E-11 83.1 18.4 143 1-146 32-232 (253)
31 cd07682 F-BAR_srGAP2 The F-BAR 98.6 3.1E-06 6.7E-11 82.0 18.2 98 1-101 32-145 (263)
32 PF00611 FCH: Fes/CIP4, and EF 98.6 3.7E-08 8E-13 79.5 4.1 49 1-49 36-91 (91)
33 cd07684 F-BAR_srGAP3 The F-BAR 98.6 4.4E-06 9.5E-11 80.7 18.2 104 1-107 32-154 (253)
34 KOG4429|consensus 98.4 2.6E-06 5.6E-11 83.7 12.3 157 38-198 4-182 (421)
35 smart00055 FCH Fes/CIP4 homolo 98.4 3E-07 6.6E-12 74.2 4.2 45 1-45 36-87 (87)
36 cd07307 BAR The Bin/Amphiphysi 97.9 0.0031 6.8E-08 55.7 19.8 120 3-139 29-151 (194)
37 cd07598 BAR_FAM92 The Bin/Amph 97.3 0.014 3E-07 55.6 15.9 148 21-197 56-209 (211)
38 cd07647 F-BAR_PSTPIP The F-BAR 96.4 0.13 2.8E-06 49.5 15.1 82 80-166 125-213 (239)
39 PF03114 BAR: BAR domain; Int 96.4 0.77 1.7E-05 41.9 19.7 122 7-146 73-198 (229)
40 PF09325 Vps5: Vps5 C terminal 96.1 0.41 8.9E-06 45.0 16.7 78 21-102 77-155 (236)
41 cd07657 F-BAR_Fes_Fer The F-BA 96.1 0.37 8.1E-06 46.6 16.6 124 26-155 94-222 (237)
42 cd07679 F-BAR_PACSIN2 The F-BA 95.9 0.26 5.6E-06 48.5 14.5 112 41-166 103-228 (258)
43 cd07596 BAR_SNX The Bin/Amphip 95.9 1.2 2.5E-05 40.9 18.3 145 7-166 44-191 (218)
44 cd07671 F-BAR_PSTPIP1 The F-BA 95.8 0.37 7.9E-06 46.8 15.2 59 103-166 153-213 (242)
45 cd07675 F-BAR_FNBP1L The F-BAR 95.8 0.33 7.1E-06 47.6 14.8 159 21-187 68-248 (252)
46 cd07655 F-BAR_PACSIN The F-BAR 95.8 0.25 5.5E-06 48.1 14.0 60 103-167 168-229 (258)
47 cd07624 BAR_SNX7_30 The Bin/Am 95.6 1.4 3E-05 41.4 17.7 54 6-59 46-104 (200)
48 cd07658 F-BAR_NOSTRIN The F-BA 95.5 0.54 1.2E-05 45.4 14.9 36 131-166 175-210 (239)
49 cd07623 BAR_SNX1_2 The Bin/Amp 95.3 2.6 5.7E-05 40.2 18.8 40 22-61 66-106 (224)
50 cd07604 BAR_ASAPs The Bin/Amph 95.2 1.7 3.6E-05 41.7 17.1 91 4-110 39-132 (215)
51 cd07307 BAR The Bin/Amphiphysi 95.1 0.63 1.4E-05 40.9 13.1 140 8-153 9-158 (194)
52 cd07664 BAR_SNX2 The Bin/Amphi 95.1 2.8 6E-05 40.6 18.3 39 22-60 76-115 (234)
53 cd07613 BAR_Endophilin_A1 The 95.0 2.6 5.7E-05 40.7 17.6 56 8-63 70-126 (223)
54 cd07640 BAR_ASAP3 The Bin/Amph 94.8 1.9 4.2E-05 41.1 15.9 93 3-111 38-133 (213)
55 cd07593 BAR_MUG137_fungi The B 94.8 2.6 5.7E-05 40.4 17.2 57 8-64 57-114 (215)
56 cd07641 BAR_ASAP1 The Bin/Amph 94.8 3.7 7.9E-05 39.4 17.9 93 3-111 38-133 (215)
57 cd07665 BAR_SNX1 The Bin/Amphi 94.5 2.9 6.4E-05 40.6 16.9 69 21-93 75-144 (234)
58 cd07651 F-BAR_PombeCdc15_like 94.5 1.8 3.9E-05 41.4 15.3 60 103-167 150-211 (236)
59 cd07676 F-BAR_FBP17 The F-BAR 94.3 1.8 3.8E-05 42.4 15.0 153 32-189 80-251 (253)
60 cd07660 BAR_Arfaptin The Bin/A 94.1 1 2.2E-05 42.9 12.4 67 90-167 105-171 (201)
61 cd07595 BAR_RhoGAP_Rich-like T 94.1 2.7 5.8E-05 41.0 15.7 138 4-166 59-197 (244)
62 cd07605 I-BAR_IMD Inverse (I)- 93.9 2.7 5.9E-05 40.5 15.2 67 95-167 118-189 (223)
63 PF06456 Arfaptin: Arfaptin-li 93.8 2.7 5.8E-05 40.6 15.0 117 31-166 89-205 (229)
64 cd07648 F-BAR_FCHO The F-BAR ( 93.7 1.5 3.2E-05 42.5 13.2 44 118-166 159-203 (261)
65 cd07645 I-BAR_IMD_BAIAP2L1 Inv 93.6 7.1 0.00015 37.7 17.1 149 5-171 44-194 (226)
66 cd07653 F-BAR_CIP4-like The F- 93.6 1.7 3.6E-05 41.7 13.2 20 118-137 177-196 (251)
67 cd07659 BAR_PICK1 The Bin/Amph 93.5 2.3 5E-05 40.7 13.7 97 92-195 109-212 (215)
68 cd07672 F-BAR_PSTPIP2 The F-BA 93.5 3.3 7.1E-05 40.2 15.2 60 103-166 154-214 (240)
69 PF08397 IMD: IRSp53/MIM homol 93.5 4.7 0.0001 38.3 15.9 36 132-167 143-178 (219)
70 cd07649 F-BAR_GAS7 The F-BAR ( 93.2 1.9 4.1E-05 41.7 12.9 53 116-173 161-214 (233)
71 cd07615 BAR_Endophilin_A3 The 93.1 9 0.00019 37.0 17.9 58 6-63 68-126 (223)
72 PF06730 FAM92: FAM92 protein; 92.9 9.3 0.0002 36.9 17.0 152 21-197 63-216 (219)
73 cd07680 F-BAR_PACSIN1 The F-BA 92.9 3 6.6E-05 41.0 14.0 58 104-166 169-228 (258)
74 cd07681 F-BAR_PACSIN3 The F-BA 92.8 1.7 3.7E-05 42.8 12.1 49 113-166 179-228 (258)
75 cd07646 I-BAR_IMD_IRSp53 Inver 92.7 10 0.00023 36.8 18.5 141 5-169 46-194 (232)
76 cd07627 BAR_Vps5p The Bin/Amph 92.5 9.9 0.00021 36.0 19.9 15 94-108 113-127 (216)
77 cd07673 F-BAR_FCHO2 The F-BAR 92.2 3 6.4E-05 41.1 13.0 47 115-166 163-210 (269)
78 cd07619 BAR_Rich2 The Bin/Amph 92.1 13 0.00028 36.5 17.3 56 7-62 62-118 (248)
79 cd07674 F-BAR_FCHO1 The F-BAR 91.8 13 0.00028 36.3 16.9 44 118-166 159-203 (261)
80 cd07656 F-BAR_srGAP The F-BAR 91.6 7.8 0.00017 37.7 14.9 33 114-146 181-220 (241)
81 KOG2398|consensus 91.5 4.1 8.9E-05 44.8 14.2 80 307-387 532-611 (611)
82 cd07621 BAR_SNX5_6 The Bin/Amp 91.4 10 0.00022 36.6 15.2 92 21-136 76-171 (219)
83 cd07618 BAR_Rich1 The Bin/Amph 91.1 16 0.00035 35.8 19.5 60 4-63 59-119 (246)
84 cd07623 BAR_SNX1_2 The Bin/Amp 91.0 12 0.00027 35.6 15.5 13 6-18 23-35 (224)
85 cd00011 BAR_Arfaptin_like The 90.9 5.3 0.00011 38.1 12.7 69 90-167 106-174 (203)
86 cd07592 BAR_Endophilin_A The B 90.8 16 0.00035 35.2 17.1 56 8-63 70-126 (223)
87 KOG3565|consensus 90.3 5.4 0.00012 44.1 13.8 81 79-159 138-230 (640)
88 KOG3771|consensus 89.8 9.5 0.00021 40.5 14.5 102 21-139 78-180 (460)
89 cd07666 BAR_SNX7 The Bin/Amphi 89.5 22 0.00048 34.8 19.0 114 6-139 86-207 (243)
90 cd07634 BAR_GAP10-like The Bin 89.4 14 0.0003 35.4 14.1 61 4-64 39-106 (207)
91 cd07664 BAR_SNX2 The Bin/Amphi 89.0 16 0.00036 35.4 14.7 23 124-146 160-182 (234)
92 cd07644 I-BAR_IMD_BAIAP2L2 Inv 88.1 25 0.00055 33.7 16.9 136 5-167 44-181 (215)
93 cd07665 BAR_SNX1 The Bin/Amphi 88.0 21 0.00045 34.7 14.6 84 78-167 115-206 (234)
94 cd07662 BAR_SNX6 The Bin/Amphi 87.9 20 0.00043 34.6 14.2 15 145-159 154-168 (218)
95 cd07606 BAR_SFC_plant The Bin/ 87.6 26 0.00057 33.3 16.1 39 26-64 63-102 (202)
96 cd07642 BAR_ASAP2 The Bin/Amph 87.5 28 0.00061 33.6 17.5 93 3-111 38-133 (215)
97 KOG2856|consensus 87.5 4.6 9.9E-05 41.8 10.1 39 113-151 188-227 (472)
98 cd07663 BAR_SNX5 The Bin/Amphi 87.4 28 0.00061 33.6 15.0 15 91-105 118-132 (218)
99 smart00721 BAR BAR domain. 87.2 25 0.00055 32.7 17.6 21 89-109 134-154 (239)
100 cd07627 BAR_Vps5p The Bin/Amph 87.1 28 0.0006 33.0 16.8 20 79-98 112-131 (216)
101 cd07620 BAR_SH3BP1 The Bin/Amp 86.8 34 0.00074 33.8 19.2 130 11-151 66-199 (257)
102 cd07630 BAR_SNX_like The Bin/A 86.3 15 0.00032 34.7 12.3 14 146-159 137-150 (198)
103 cd07601 BAR_APPL The Bin/Amphi 85.7 35 0.00075 32.8 15.4 61 4-64 39-104 (215)
104 KOG1118|consensus 85.7 45 0.00097 34.0 20.9 110 6-152 87-198 (366)
105 cd07616 BAR_Endophilin_B1 The 85.3 38 0.00083 32.9 18.3 60 4-63 71-131 (229)
106 cd07643 I-BAR_IMD_MIM Inverse 85.2 39 0.00084 32.9 15.0 58 117-174 137-201 (231)
107 cd07617 BAR_Endophilin_B2 The 85.0 39 0.00083 32.7 18.1 59 4-62 71-130 (220)
108 cd07663 BAR_SNX5 The Bin/Amphi 84.4 41 0.00088 32.5 15.4 71 21-95 75-146 (218)
109 PF03114 BAR: BAR domain; Int 84.3 30 0.00064 31.4 13.2 34 77-110 119-152 (229)
110 cd07621 BAR_SNX5_6 The Bin/Amp 84.2 23 0.00049 34.2 12.6 58 84-159 112-169 (219)
111 KOG0250|consensus 83.9 44 0.00096 39.1 16.5 39 89-127 365-405 (1074)
112 cd07600 BAR_Gvp36 The Bin/Amph 83.8 45 0.00098 32.6 18.3 57 7-63 79-145 (242)
113 cd07639 BAR_ACAP1 The Bin/Amph 83.8 41 0.00088 32.0 17.4 110 4-132 39-149 (200)
114 PF05276 SH3BP5: SH3 domain-bi 83.7 42 0.00091 32.8 14.4 110 8-144 96-219 (239)
115 cd07662 BAR_SNX6 The Bin/Amphi 83.7 44 0.00095 32.3 14.2 21 116-136 150-170 (218)
116 PF03904 DUF334: Domain of unk 82.9 48 0.001 32.2 14.5 33 114-146 118-150 (230)
117 cd07633 BAR_OPHN1 The Bin/Amph 82.7 46 0.001 31.9 15.5 42 24-65 65-107 (207)
118 KOG0521|consensus 82.7 29 0.00064 39.4 14.6 64 3-66 57-121 (785)
119 cd07603 BAR_ACAPs The Bin/Amph 82.6 44 0.00096 31.6 17.7 61 4-64 39-100 (200)
120 cd07602 BAR_RhoGAP_OPHN1-like 81.7 50 0.0011 31.6 16.5 42 23-64 64-106 (207)
121 cd07591 BAR_Rvs161p The Bin/Am 81.4 52 0.0011 31.6 17.1 42 98-139 125-167 (224)
122 KOG1924|consensus 80.1 44 0.00095 38.1 14.3 13 21-33 286-298 (1102)
123 cd07596 BAR_SNX The Bin/Amphip 79.3 50 0.0011 30.0 14.7 49 124-173 146-194 (218)
124 cd07638 BAR_ACAP2 The Bin/Amph 78.9 61 0.0013 30.8 16.3 59 6-64 41-100 (200)
125 cd07628 BAR_Atg24p The Bin/Amp 77.1 62 0.0013 30.0 17.7 57 7-63 37-102 (185)
126 cd07594 BAR_Endophilin_B The B 77.0 75 0.0016 30.8 18.5 57 6-62 73-130 (229)
127 KOG2273|consensus 75.0 1.1E+02 0.0024 32.6 15.5 13 148-160 452-464 (503)
128 KOG0979|consensus 74.5 1.8E+02 0.0039 34.1 17.7 18 47-64 209-226 (1072)
129 PF10168 Nup88: Nuclear pore c 74.4 40 0.00087 38.0 12.5 32 113-144 682-713 (717)
130 PF10234 Cluap1: Clusterin-ass 74.4 94 0.002 31.0 13.7 23 114-139 223-245 (267)
131 KOG0977|consensus 73.4 1.5E+02 0.0032 32.5 18.6 43 62-104 184-226 (546)
132 cd07632 BAR_APPL2 The Bin/Amph 73.3 91 0.002 30.1 15.2 60 7-66 42-106 (215)
133 KOG2008|consensus 72.8 60 0.0013 33.2 11.9 68 28-105 12-79 (426)
134 TIGR00634 recN DNA repair prot 72.5 88 0.0019 33.9 14.3 75 82-156 304-386 (563)
135 PRK04778 septation ring format 72.3 75 0.0016 34.6 13.7 82 23-111 253-339 (569)
136 KOG2273|consensus 72.0 1.4E+02 0.0031 31.7 16.7 21 24-44 331-351 (503)
137 PF09325 Vps5: Vps5 C terminal 71.2 90 0.0019 29.1 16.9 16 94-109 133-148 (236)
138 smart00721 BAR BAR domain. 71.0 89 0.0019 29.0 17.8 93 26-136 95-190 (239)
139 KOG0250|consensus 70.2 1.9E+02 0.004 34.2 16.4 12 3-14 212-223 (1074)
140 PF09728 Taxilin: Myosin-like 70.0 1.3E+02 0.0028 30.4 15.3 80 25-108 4-86 (309)
141 KOG0995|consensus 69.8 1.8E+02 0.0039 32.0 16.7 81 85-166 290-382 (581)
142 cd07622 BAR_SNX4 The Bin/Amphi 68.5 1.1E+02 0.0023 29.0 17.5 26 132-157 171-196 (201)
143 cd07625 BAR_Vps17p The Bin/Amp 66.9 1.3E+02 0.0028 29.3 21.7 59 4-63 55-114 (230)
144 cd07597 BAR_SNX8 The Bin/Amphi 66.2 1.3E+02 0.0028 29.1 16.7 104 21-134 86-191 (246)
145 PF06034 DUF919: Nucleopolyhed 66.0 55 0.0012 25.6 8.0 54 83-136 5-58 (62)
146 KOG0996|consensus 64.7 2.9E+02 0.0062 33.1 16.5 18 91-108 414-431 (1293)
147 cd07637 BAR_ACAP3 The Bin/Amph 63.5 1.4E+02 0.003 28.4 16.9 54 11-64 46-100 (200)
148 cd07590 BAR_Bin3 The Bin/Amphi 63.5 1.5E+02 0.0032 28.7 19.5 31 116-146 145-176 (225)
149 KOG0994|consensus 63.3 2.8E+02 0.006 33.4 15.9 26 126-151 1657-1682(1758)
150 cd07630 BAR_SNX_like The Bin/A 63.3 1.4E+02 0.003 28.3 14.9 37 94-135 115-151 (198)
151 KOG0994|consensus 62.5 2.7E+02 0.0059 33.5 15.6 28 83-110 1620-1647(1758)
152 PRK04654 sec-independent trans 62.4 20 0.00044 34.4 6.0 33 9-41 23-56 (214)
153 PF08317 Spc7: Spc7 kinetochor 61.7 1.8E+02 0.004 29.2 15.0 17 113-129 206-222 (325)
154 TIGR02169 SMC_prok_A chromosom 61.4 2.4E+02 0.0052 32.5 15.7 16 345-363 640-655 (1164)
155 cd07594 BAR_Endophilin_B The B 61.2 1.6E+02 0.0035 28.5 13.2 76 35-110 71-154 (229)
156 KOG1086|consensus 60.5 68 0.0015 34.3 9.9 121 41-166 80-265 (594)
157 PF10550 Toxin_36: Conantokin- 59.8 9.3 0.0002 21.5 1.9 13 4-16 2-14 (15)
158 PF09789 DUF2353: Uncharacteri 59.5 1.5E+02 0.0032 30.3 12.0 29 117-145 134-162 (319)
159 TIGR03545 conserved hypothetic 58.8 1.7E+02 0.0037 32.1 13.1 27 327-353 472-498 (555)
160 PF03915 AIP3: Actin interacti 58.6 1E+02 0.0022 32.6 11.1 80 86-165 199-301 (424)
161 KOG4250|consensus 58.3 2.5E+02 0.0054 31.8 14.2 81 86-166 554-643 (732)
162 cd07635 BAR_GRAF2 The Bin/Amph 58.3 1.8E+02 0.0038 28.0 16.8 59 6-64 41-106 (207)
163 PF07851 TMPIT: TMPIT-like pro 56.9 72 0.0016 32.7 9.3 48 25-72 3-50 (330)
164 cd07599 BAR_Rvs167p The Bin/Am 56.8 1.7E+02 0.0037 27.4 16.9 25 115-139 148-172 (216)
165 cd07686 F-BAR_Fer The F-BAR (F 56.7 2E+02 0.0043 28.1 17.7 58 90-153 159-217 (234)
166 COG1579 Zn-ribbon protein, pos 56.6 2E+02 0.0044 28.2 18.5 183 5-198 3-195 (239)
167 PF13851 GAS: Growth-arrest sp 56.3 1.8E+02 0.0039 27.5 16.7 17 42-58 25-41 (201)
168 KOG0977|consensus 55.2 3.2E+02 0.007 30.0 16.2 44 17-60 78-126 (546)
169 cd07614 BAR_Endophilin_A2 The 55.2 2.1E+02 0.0045 27.8 19.1 59 5-63 67-126 (223)
170 PF10455 BAR_2: Bin/amphiphysi 54.1 2.5E+02 0.0053 28.3 15.3 106 6-135 121-241 (289)
171 PF12128 DUF3584: Protein of u 53.4 3.1E+02 0.0067 32.8 15.0 16 323-338 1044-1059(1201)
172 PF04156 IncA: IncA protein; 53.2 1.8E+02 0.0039 26.5 12.2 24 86-109 127-150 (191)
173 cd07593 BAR_MUG137_fungi The B 52.6 2.2E+02 0.0048 27.3 14.7 22 88-109 113-134 (215)
174 cd07631 BAR_APPL1 The Bin/Amph 52.1 2.3E+02 0.005 27.4 13.3 112 22-139 12-128 (215)
175 PF12718 Tropomyosin_1: Tropom 51.5 1.8E+02 0.0039 26.0 15.6 31 129-159 110-140 (143)
176 COG1842 PspA Phage shock prote 50.4 2.4E+02 0.0053 27.2 14.5 66 21-93 1-66 (225)
177 KOG0579|consensus 50.3 2.6E+02 0.0057 31.8 12.6 39 119-157 1116-1154(1187)
178 PF15067 FAM124: FAM124 family 48.8 11 0.00024 36.7 1.9 67 322-393 139-215 (236)
179 PRK04863 mukB cell division pr 48.3 5.4E+02 0.012 31.8 16.1 39 113-151 1085-1123(1486)
180 PF05600 DUF773: Protein of un 47.8 4E+02 0.0086 28.9 13.8 70 21-105 89-168 (507)
181 PF05384 DegS: Sensor protein 47.7 1.1E+02 0.0023 28.2 8.0 68 84-151 15-88 (159)
182 cd07590 BAR_Bin3 The Bin/Amphi 47.5 2.6E+02 0.0055 27.1 11.0 25 122-146 144-168 (225)
183 PF05010 TACC: Transforming ac 47.4 2.6E+02 0.0057 26.7 16.7 16 176-191 191-206 (207)
184 PF05266 DUF724: Protein of un 47.1 2.1E+02 0.0044 27.0 10.1 20 33-52 79-98 (190)
185 KOG4403|consensus 46.8 3.4E+02 0.0073 29.2 12.3 40 115-154 308-367 (575)
186 cd07654 F-BAR_FCHSD The F-BAR 45.7 3.1E+02 0.0067 27.1 15.7 57 5-61 80-142 (264)
187 cd00179 SynN Syntaxin N-termin 45.5 2E+02 0.0044 24.9 15.0 26 127-152 92-117 (151)
188 PF11559 ADIP: Afadin- and alp 45.3 2.2E+02 0.0047 25.2 11.2 21 33-53 45-65 (151)
189 KOG4466|consensus 45.2 2.1E+02 0.0046 28.7 10.1 39 126-171 100-139 (291)
190 cd00160 RhoGEF Guanine nucleot 45.1 1.4E+02 0.0031 26.2 8.5 51 3-53 11-67 (181)
191 PF07464 ApoLp-III: Apolipopho 45.0 2.3E+02 0.005 25.9 9.7 34 6-39 38-76 (155)
192 KOG0612|consensus 44.5 5.1E+02 0.011 31.3 14.3 36 114-151 642-677 (1317)
193 cd07604 BAR_ASAPs The Bin/Amph 44.0 3E+02 0.0065 26.4 16.1 28 133-160 148-175 (215)
194 PF12128 DUF3584: Protein of u 43.7 6.4E+02 0.014 30.2 18.1 26 21-46 241-266 (1201)
195 PLN03188 kinesin-12 family pro 43.7 6.8E+02 0.015 30.4 16.7 7 76-82 1191-1197(1320)
196 PF05701 WEMBL: Weak chloropla 43.0 4.6E+02 0.01 28.3 14.1 43 21-63 304-346 (522)
197 cd07616 BAR_Endophilin_B1 The 42.5 3.3E+02 0.0072 26.5 12.5 77 34-110 70-154 (229)
198 PF05667 DUF812: Protein of un 42.5 4.2E+02 0.0092 29.4 13.0 34 115-148 504-537 (594)
199 TIGR03545 conserved hypothetic 42.0 1.7E+02 0.0037 32.0 9.9 74 83-157 179-253 (555)
200 cd07603 BAR_ACAPs The Bin/Amph 41.6 3.1E+02 0.0067 25.9 11.8 22 88-109 100-121 (200)
201 KOG1300|consensus 41.3 2.8E+02 0.0061 30.7 11.2 29 42-72 290-318 (593)
202 PF10266 Strumpellin: Heredita 41.3 7E+02 0.015 29.8 15.8 97 100-198 367-466 (1081)
203 cd07678 F-BAR_FCHSD1 The F-BAR 41.2 3.7E+02 0.008 26.7 11.4 34 30-63 110-143 (263)
204 TIGR01069 mutS2 MutS2 family p 40.9 5E+02 0.011 29.6 13.7 13 365-379 743-755 (771)
205 cd07631 BAR_APPL1 The Bin/Amph 40.7 3.5E+02 0.0075 26.2 16.8 60 5-64 40-104 (215)
206 KOG1162|consensus 40.5 4.6E+02 0.0099 29.3 12.8 115 33-159 46-163 (617)
207 PF05276 SH3BP5: SH3 domain-bi 40.3 2.7E+02 0.0058 27.3 10.0 26 84-109 193-218 (239)
208 PF08385 DHC_N1: Dynein heavy 39.8 2E+02 0.0044 30.5 10.0 19 145-163 295-313 (579)
209 PF07227 DUF1423: Protein of u 39.0 3.4E+02 0.0075 29.0 11.1 19 121-139 387-405 (446)
210 cd07667 BAR_SNX30 The Bin/Amph 39.0 3.9E+02 0.0084 26.3 18.0 48 17-64 97-149 (240)
211 PRK05561 DNA topoisomerase IV 38.8 1.9E+02 0.004 32.9 9.8 53 113-165 434-489 (742)
212 cd07618 BAR_Rich1 The Bin/Amph 38.6 3.5E+02 0.0075 26.6 10.5 119 35-153 59-190 (246)
213 KOG1962|consensus 38.6 2.7E+02 0.0058 27.0 9.5 13 49-61 116-128 (216)
214 TIGR02894 DNA_bind_RsfA transc 38.5 3.3E+02 0.0071 25.3 10.6 30 115-144 124-153 (161)
215 PF11932 DUF3450: Protein of u 38.3 3.6E+02 0.0077 26.0 10.6 98 93-196 53-161 (251)
216 cd07636 BAR_GRAF The Bin/Amphi 38.1 3.7E+02 0.008 25.8 17.2 41 24-64 65-106 (207)
217 KOG0161|consensus 37.9 9.7E+02 0.021 30.6 17.3 30 21-50 1296-1325(1930)
218 cd07611 BAR_Amphiphysin_I_II T 37.6 3.8E+02 0.0083 25.8 15.9 25 115-139 138-162 (211)
219 KOG0933|consensus 37.3 7.8E+02 0.017 29.3 19.3 31 21-51 296-326 (1174)
220 KOG2008|consensus 37.2 4.9E+02 0.011 26.9 11.7 123 21-146 89-227 (426)
221 PF05667 DUF812: Protein of un 37.2 6.2E+02 0.013 28.1 14.7 14 114-127 517-530 (594)
222 PF10168 Nup88: Nuclear pore c 37.1 6.7E+02 0.015 28.5 16.5 16 27-42 537-552 (717)
223 PF07851 TMPIT: TMPIT-like pro 37.1 3.5E+02 0.0075 27.9 10.6 14 178-191 118-131 (330)
224 PF10158 LOH1CR12: Tumour supp 36.8 3E+02 0.0066 24.4 10.9 21 88-108 69-89 (131)
225 PRK15030 multidrug efflux syst 36.6 3E+02 0.0065 28.3 10.3 59 85-143 106-168 (397)
226 KOG0933|consensus 36.4 8.1E+02 0.017 29.2 16.0 7 230-236 944-950 (1174)
227 PRK04778 septation ring format 36.3 6E+02 0.013 27.7 13.3 38 21-58 59-97 (569)
228 KOG4643|consensus 36.3 8.1E+02 0.018 29.2 15.7 26 114-139 500-525 (1195)
229 PF11423 Repressor_Mnt: Regula 36.1 66 0.0014 21.5 3.4 25 32-56 1-26 (30)
230 TIGR01541 tape_meas_lam_C phag 35.8 5E+02 0.011 26.6 16.2 76 85-160 82-163 (332)
231 cd07598 BAR_FAM92 The Bin/Amph 35.8 4E+02 0.0086 25.4 14.3 40 25-64 38-81 (211)
232 PF04642 DUF601: Protein of un 35.7 3.2E+02 0.007 27.2 9.6 23 124-146 239-261 (311)
233 cd07632 BAR_APPL2 The Bin/Amph 35.7 4.2E+02 0.0091 25.7 13.8 113 21-139 11-128 (215)
234 PF10368 YkyA: Putative cell-w 35.5 3.9E+02 0.0085 25.3 16.1 36 111-146 155-197 (204)
235 cd07617 BAR_Endophilin_B2 The 35.3 4.2E+02 0.0092 25.6 13.9 101 34-134 70-179 (220)
236 PRK09578 periplasmic multidrug 35.1 3.2E+02 0.007 27.8 10.3 58 86-143 105-166 (385)
237 PF15254 CCDC14: Coiled-coil d 35.1 5.1E+02 0.011 29.8 12.1 24 120-143 498-521 (861)
238 KOG1451|consensus 35.0 7E+02 0.015 28.0 16.5 41 24-64 83-124 (812)
239 PF07926 TPR_MLP1_2: TPR/MLP1/ 34.6 3.1E+02 0.0067 23.9 15.7 43 118-160 75-117 (132)
240 PF05529 Bap31: B-cell recepto 34.5 2.9E+02 0.0064 25.4 9.0 34 113-146 158-191 (192)
241 PF08581 Tup_N: Tup N-terminal 34.0 2.5E+02 0.0054 22.9 7.3 17 24-40 2-18 (79)
242 PF08317 Spc7: Spc7 kinetochor 33.8 5.1E+02 0.011 26.1 12.9 15 152-166 268-282 (325)
243 PRK05431 seryl-tRNA synthetase 33.7 5.3E+02 0.012 27.1 11.7 30 117-146 67-96 (425)
244 KOG4674|consensus 33.2 1.1E+03 0.024 29.9 17.3 146 5-150 287-453 (1822)
245 PF14712 Snapin_Pallidin: Snap 33.1 1.8E+02 0.0039 23.4 6.5 41 21-61 9-49 (92)
246 COG5283 Phage-related tail pro 32.7 6.8E+02 0.015 30.2 13.0 55 49-106 27-81 (1213)
247 PF03357 Snf7: Snf7; InterPro 32.1 3E+02 0.0066 24.1 8.4 27 82-108 44-70 (171)
248 cd07652 F-BAR_Rgd1 The F-BAR ( 32.0 4.7E+02 0.01 25.1 13.3 13 135-147 170-182 (234)
249 PF00521 DNA_topoisoIV: DNA gy 31.9 3.8E+02 0.0083 28.1 10.3 39 112-150 387-425 (426)
250 PF02403 Seryl_tRNA_N: Seryl-t 31.4 3E+02 0.0065 22.7 11.8 76 53-132 8-83 (108)
251 PF03792 PBC: PBC domain; Int 30.9 4.3E+02 0.0093 25.2 9.3 45 91-135 120-177 (191)
252 smart00787 Spc7 Spc7 kinetocho 30.7 5.8E+02 0.013 25.8 14.8 49 91-139 174-227 (312)
253 TIGR01061 parC_Gpos DNA topois 30.7 4.6E+02 0.01 29.8 11.3 54 112-165 423-479 (738)
254 cd07609 BAR_SIP3_fungi The Bin 30.5 2.6E+02 0.0057 26.8 8.1 27 40-66 77-104 (214)
255 KOG2077|consensus 30.3 4.3E+02 0.0093 29.5 10.3 81 25-108 335-421 (832)
256 PF06160 EzrA: Septation ring 30.3 7.5E+02 0.016 27.0 14.8 47 85-131 104-151 (560)
257 PF06730 FAM92: FAM92 protein; 30.3 5.2E+02 0.011 25.1 10.2 18 149-166 164-181 (219)
258 PF09738 DUF2051: Double stran 30.2 2.9E+02 0.0062 28.0 8.6 50 1-50 87-136 (302)
259 PHA02562 46 endonuclease subun 29.9 6.9E+02 0.015 26.5 12.3 8 346-353 529-536 (562)
260 KOG0978|consensus 29.8 8.7E+02 0.019 27.6 13.5 187 4-193 481-669 (698)
261 KOG0161|consensus 29.8 1.3E+03 0.028 29.6 17.6 40 71-110 1100-1139(1930)
262 PF02495 7kD_coat: 7kD viral c 29.6 71 0.0015 24.2 3.3 31 336-366 17-51 (59)
263 PF04782 DUF632: Protein of un 29.5 3.7E+02 0.0079 27.4 9.3 36 92-127 105-140 (312)
264 KOG0243|consensus 29.3 1E+03 0.022 28.3 15.9 26 85-110 479-504 (1041)
265 cd07605 I-BAR_IMD Inverse (I)- 29.2 5.3E+02 0.011 24.9 17.9 15 6-20 45-59 (223)
266 smart00787 Spc7 Spc7 kinetocho 29.2 6.2E+02 0.013 25.7 12.8 37 21-57 153-189 (312)
267 cd07667 BAR_SNX30 The Bin/Amph 28.9 5.7E+02 0.012 25.1 15.4 17 116-132 174-190 (240)
268 PRK05560 DNA gyrase subunit A; 28.2 5.2E+02 0.011 29.6 11.3 53 113-165 427-482 (805)
269 cd07624 BAR_SNX7_30 The Bin/Am 28.2 4.9E+02 0.011 24.2 15.9 61 95-157 122-197 (200)
270 PF04011 LemA: LemA family; I 28.1 4.7E+02 0.01 23.9 13.1 45 114-158 123-167 (186)
271 KOG3691|consensus 27.8 4.4E+02 0.0095 30.7 10.2 105 2-110 54-170 (982)
272 cd07588 BAR_Amphiphysin The Bi 27.4 5.5E+02 0.012 24.5 12.7 26 114-139 137-162 (211)
273 PF04778 LMP: LMP repeated reg 26.4 5.2E+02 0.011 23.8 12.6 90 34-131 38-133 (157)
274 KOG0995|consensus 26.3 9.2E+02 0.02 26.7 13.5 18 21-38 261-278 (581)
275 KOG1853|consensus 26.2 6.8E+02 0.015 25.1 13.1 39 32-70 12-50 (333)
276 PF05483 SCP-1: Synaptonemal c 26.0 1E+03 0.022 27.2 17.7 19 141-159 314-332 (786)
277 PF07464 ApoLp-III: Apolipopho 26.0 5.1E+02 0.011 23.7 10.0 30 26-55 27-56 (155)
278 cd07588 BAR_Amphiphysin The Bi 25.6 6E+02 0.013 24.3 17.1 25 45-69 84-109 (211)
279 KOG4552|consensus 25.4 6.4E+02 0.014 24.6 9.5 16 51-66 57-72 (272)
280 KOG2176|consensus 25.3 1.1E+03 0.024 27.2 15.5 39 30-68 84-122 (800)
281 PRK00118 putative DNA-binding 25.0 1.9E+02 0.0042 24.7 5.5 56 43-99 37-92 (104)
282 PRK01919 tatB sec-independent 25.0 2E+02 0.0044 26.8 6.0 32 9-40 23-55 (169)
283 KOG3564|consensus 24.9 6.2E+02 0.013 27.7 10.2 15 28-42 12-26 (604)
284 KOG0980|consensus 24.8 1.2E+03 0.025 27.4 15.0 131 33-170 375-509 (980)
285 TIGR01005 eps_transp_fam exopo 24.8 8.1E+02 0.018 27.4 11.9 27 117-143 377-403 (754)
286 TIGR03185 DNA_S_dndD DNA sulfu 24.6 9.7E+02 0.021 26.4 16.5 20 89-108 435-454 (650)
287 PF06419 COG6: Conserved oligo 24.6 8.3E+02 0.018 27.0 11.7 82 28-109 18-103 (618)
288 PF10146 zf-C4H2: Zinc finger- 24.5 6.6E+02 0.014 24.4 9.8 13 179-191 93-106 (230)
289 PF10212 TTKRSYEDQ: Predicted 24.1 8.1E+02 0.018 26.8 11.1 44 114-157 453-496 (518)
290 PF01093 Clusterin: Clusterin; 23.9 8.9E+02 0.019 25.9 11.2 90 49-157 3-96 (436)
291 KOG0804|consensus 23.7 9.5E+02 0.021 26.0 13.4 18 88-105 370-387 (493)
292 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.7 4.9E+02 0.011 22.6 12.3 81 30-110 7-87 (132)
293 PF00621 RhoGEF: RhoGEF domain 23.6 4.7E+02 0.01 22.4 10.9 49 3-51 8-62 (180)
294 KOG4031|consensus 23.6 2.9E+02 0.0062 26.7 6.8 16 49-64 101-116 (216)
295 PRK06569 F0F1 ATP synthase sub 23.6 5.7E+02 0.012 23.4 12.8 11 52-62 31-41 (155)
296 cd07685 F-BAR_Fes The F-BAR (F 23.6 7.1E+02 0.015 24.5 16.0 23 89-111 161-183 (237)
297 KOG3876|consensus 23.3 7.8E+02 0.017 24.9 11.5 38 123-167 257-294 (341)
298 KOG2072|consensus 23.3 1.2E+03 0.025 27.3 12.4 135 42-194 47-211 (988)
299 PRK10869 recombination and rep 23.3 9.9E+02 0.021 26.0 18.9 68 81-148 298-373 (553)
300 TIGR01069 mutS2 MutS2 family p 23.3 1.1E+03 0.024 26.9 12.6 15 328-342 734-748 (771)
301 PF13851 GAS: Growth-arrest sp 23.0 6.4E+02 0.014 23.7 15.7 50 21-70 29-78 (201)
302 PF10498 IFT57: Intra-flagella 22.9 8.6E+02 0.019 25.2 11.2 29 80-108 271-299 (359)
303 PF15188 CCDC-167: Coiled-coil 22.9 3.2E+02 0.007 22.7 6.2 45 115-159 4-54 (85)
304 smart00325 RhoGEF Guanine nucl 22.6 5.2E+02 0.011 22.5 8.6 50 3-52 8-63 (180)
305 PF04065 Not3: Not1 N-terminal 22.5 4.2E+02 0.009 25.9 7.9 73 114-191 6-84 (233)
306 PF05010 TACC: Transforming ac 22.5 6.9E+02 0.015 23.9 13.9 36 124-159 101-136 (207)
307 PF13805 Pil1: Eisosome compon 22.5 7.9E+02 0.017 24.6 15.7 20 178-197 247-266 (271)
308 PRK10476 multidrug resistance 22.4 7.8E+02 0.017 24.5 12.6 55 89-143 121-179 (346)
309 PF04899 MbeD_MobD: MbeD/MobD 22.4 4E+02 0.0088 21.2 6.7 53 2-57 14-66 (70)
310 COG5185 HEC1 Protein involved 22.3 1E+03 0.023 26.0 17.1 102 23-128 261-380 (622)
311 COG1196 Smc Chromosome segrega 22.3 1.4E+03 0.03 27.3 17.2 45 25-69 238-282 (1163)
312 PRK09859 multidrug efflux syst 22.2 7.4E+02 0.016 25.2 10.2 54 90-143 107-164 (385)
313 KOG0163|consensus 22.0 1.3E+03 0.028 26.9 14.8 28 308-335 1188-1215(1259)
314 PF14612 Ino80_Iec3: IEC3 subu 21.7 89 0.0019 30.5 3.1 28 132-159 1-28 (232)
315 COG4026 Uncharacterized protei 21.3 8E+02 0.017 24.2 12.9 68 93-160 132-203 (290)
316 PRK15048 methyl-accepting chem 21.2 1E+03 0.022 25.3 12.7 37 21-57 387-423 (553)
317 PF04642 DUF601: Protein of un 21.2 5.7E+02 0.012 25.6 8.4 15 127-141 256-270 (311)
318 COG1340 Uncharacterized archae 21.1 8.8E+02 0.019 24.6 13.1 23 48-70 159-181 (294)
319 PRK01770 sec-independent trans 20.9 2.7E+02 0.0058 26.0 6.0 33 9-41 23-56 (171)
320 PF04108 APG17: Autophagy prot 20.8 9.7E+02 0.021 25.0 16.6 35 24-58 239-273 (412)
321 PF15290 Syntaphilin: Golgi-lo 20.8 3.5E+02 0.0075 27.4 7.0 25 132-159 91-115 (305)
322 PF15066 CAGE1: Cancer-associa 20.1 1.1E+03 0.025 25.5 16.9 76 85-165 431-509 (527)
323 KOG0612|consensus 20.1 1.6E+03 0.035 27.3 17.8 73 92-164 639-716 (1317)
No 1
>KOG2398|consensus
Probab=100.00 E-value=9.5e-48 Score=406.86 Aligned_cols=197 Identities=31% Similarity=0.498 Sum_probs=178.4
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
|.||+.|+|.|.++++++++ .|+|.++|++++.++++++.+|.+|++.|+++++++.+|.++|++.||+++++....
T Consensus 19 a~iE~~y~k~~~~l~~k~~~~~~~gs~~~~~~~~r~~~~~ma~~h~~l~~~l~~~i~~~~k~~~~~~k~~k~~~~~~v~~ 98 (611)
T KOG2398|consen 19 ASIEEDYAKRMGKLAAKAKSYTENGSFAESWLVMRTSTEAMAKSHLELSRELQDLIKDVAKYYAEQLKTRKKSKEEGVEK 98 (611)
T ss_pred HhhhHHHHHHHHHHhhccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 57999999999999999987 999999999999999999999999999999999999999999999999998875545
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 78 LEIVQTIQ--STTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCK 155 (396)
Q Consensus 78 ~ea~k~~q--~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq 155 (396)
.+..|.+. +...++.+++++|..+|.+.+.+++.....+++.|++.+.+++.++|+.++++|+.+|.+|+++|++.|.
T Consensus 99 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~e~e~~~~~~k~~~~~~k~~~~i~~~~~~y~~~~~~~~~vr~~w~~~~~~~c~ 178 (611)
T KOG2398|consen 99 LKQDQSKKKAKDTYEVLCAKSNYLHRCQEKESLKEKEKRKKELAKAELKIKEAREEYRSLVAKLEKVRKDWEQEMTDLCL 178 (611)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55444443 5677788899999999999999988878899999999999999999999999999999999999999999
Q ss_pred HHhhccccchhhhhccCCC--------CCcchHhHHHHHHHhhcccccCCc
Q psy17650 156 IRNDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAGNLTLSPL 198 (396)
Q Consensus 156 ~Fqd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIeni~v~~~ 198 (396)
+||+.|+.|+. ++|..++ .|..++++|++++++|++|+++.+
T Consensus 179 ~fQ~~Ee~rl~-~lk~~l~~~~~~is~~~~~~~q~~E~~k~~le~~sv~~~ 228 (611)
T KOG2398|consen 179 KFQEIEESRLS-FLKEELWLFANQISESCVKIDQVMEEFKLTLESCSVDED 228 (611)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhccchhHHHHHHHHhhccCCHHHH
Confidence 99999999986 4666553 478999999999999999999875
No 2
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=8.8e-41 Score=324.78 Aligned_cols=198 Identities=42% Similarity=0.603 Sum_probs=189.5
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
|.||+.|||.|.||||+|.+ +|||+++|+.|+.++|++|.+|++|+++|++++++|.+|++++++.||++|+.++++
T Consensus 39 a~iEe~Yak~L~kLak~~~~~~~~Gt~~~~~~~~~~e~e~~a~~H~~la~~L~~~~~~l~~~~~~~~k~rK~~ke~~~~~ 118 (269)
T cd07673 39 ATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLELVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGT 118 (269)
T ss_pred HHHHHHHHHHHHHHHhhhccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhH
Confidence 57999999999999999977 999999999999999999999999999999999999999999999999999989999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 78 LEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 78 ~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
++++++|+..++.++|||++|+++|+|.|++++.+++++++||++.|++||.++|+.+|++|+.++.+|+++|..+|+.|
T Consensus 119 ~~~~~~~~~~~~~~~KaK~~Y~~~c~e~e~~~~~~~t~k~leK~~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~~~~ 198 (269)
T cd07673 119 LEAVQNIQSITQALQKSKENYNAKCLEQERLKKEGATQREIEKAAVKSKKATESYKLYVEKYALAKADFEQKMTETAQKF 198 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999988999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhccCCC--------CCcchHhHHHHHHHhhcccccCCcc
Q psy17650 158 NDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 158 qd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIeni~v~~~~ 199 (396)
|++|++||. .++..++ +++.++++|++|+.+|++|+++.+.
T Consensus 199 Q~~Ee~Ri~-~~k~~l~~y~~~~s~~~~~~~~~~e~ir~~le~~d~~~Di 247 (269)
T cd07673 199 QDIEETHLI-RIKEIIGSYSNSVKEIHIQIGQVHEEFINNMANTTVESLI 247 (269)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHhCCHHHHH
Confidence 999999997 5777764 3679999999999999999999864
No 3
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=2.1e-38 Score=306.55 Aligned_cols=198 Identities=39% Similarity=0.579 Sum_probs=186.3
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
|.||+.|||+|.||||.+.+ +|||+++|+.|+.++|++|++|++|+++|++++++|.+|+++|++.||+.++...++
T Consensus 32 a~IEe~Yak~L~klak~~~~~~e~Gtl~~~w~~~~~~~E~~a~~H~~l~~~L~~~~~~i~~~~~~~~k~~kk~~e~~~~~ 111 (261)
T cd07674 32 AAIEETYSKSMSKLSKMASNGSPLGTFAPMWEVFRVSSDKLALCHLELMRKLNDLIKDINRYGDEQVKIHKKTKEEAIGT 111 (261)
T ss_pred HHHHHHHHHHHHHHHhcccCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 57999999999999999877 999999999999999999999999999999999999999999999999987777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 78 LEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 78 ~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
+++++.|+..++.+.|||++|+++|+|.+++++.+.+++|++|+..|.+||.++|+.++++|+.++.+|+.+|...|+.|
T Consensus 112 ~~~~q~~q~~~~~l~kaK~~Y~~~cke~e~a~~~~~s~k~leK~~~K~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~~~~ 191 (261)
T cd07674 112 LEAVQSLQVQSQHLQKSRENYHSKCVEQERLRREGVPQKELEKAELKTKKAAESLRGSVEKYNRARGDFEQKMLESAQKF 191 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhccCCC--------CCcchHhHHHHHHHhhcccccCCcc
Q psy17650 158 NDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 158 qd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIeni~v~~~~ 199 (396)
|+.|++||. +++.+++ .++.++++|++|+.+|++||++.+.
T Consensus 192 Q~~Ee~Ri~-~lk~~L~~~~~~~~~~~~~~~~~~e~~~~~l~~id~~~Di 240 (261)
T cd07674 192 QDIEETHLR-HMKLLIKGYSHSVEDTHVQIGQVHEEFKQNVENVGVENLI 240 (261)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHhCCHHHHH
Confidence 999999996 5777764 3568899999999999999998864
No 4
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=3.9e-38 Score=303.78 Aligned_cols=199 Identities=47% Similarity=0.716 Sum_probs=189.6
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
|.||+.|||.|.||||+|.+ +|||.++|+.|+.++|++|.+|.+|+++|.+++++|.+|.+++++.||+++++++++
T Consensus 32 a~IEe~Yak~L~kLakk~~~~~~~gt~~~~w~~i~~~~e~~a~~H~~l~~~L~~~~~~l~~~~~~~~k~rK~~k~~~~~~ 111 (261)
T cd07648 32 ATIEETYSKALNKLAKQASNSSQLGTFAPLWLVLRVSTEKLSELHLQLVQKLQELIKDVQKYGEEQHKKHKKVKEEESGT 111 (261)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57999999999999999987 999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 78 LEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 78 ~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
.++++.|+...+.+.|||+.|+.+|+|+++++.++.+++|++|++.|++||.++|+..|++|+.++.+|+.+|...|+.|
T Consensus 112 ~k~~~~~~~~~~~l~KaK~~Y~~~c~e~e~~~~~~~s~k~~eK~~~K~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~~~~ 191 (261)
T cd07648 112 AEAVQAIQTTTAALQKAKEAYHARCLELERLRRENASPKEIEKAEAKLKKAQDEYKALVEKYNNIRADFETKMTDSCKRF 191 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhccCCC--------CCcchHhHHHHHHHhhcccccCCccc
Q psy17650 158 NDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAGNLTLSPLSV 200 (396)
Q Consensus 158 qd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIeni~v~~~~~ 200 (396)
|+.|++||. ++|.+++ .++.++++|++|+.+|++|+++.+..
T Consensus 192 Q~lEe~Ri~-~~k~~l~~y~~~~~~~~~~~~~~~e~~~~~~~~id~~~Di~ 241 (261)
T cd07648 192 QEIEESHLR-QMKEFLASYAEVLSENHSAVGQVHEEFKRQVDELTVDKLLR 241 (261)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCCHHHHHH
Confidence 999999997 5777774 36689999999999999999998643
No 5
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=100.00 E-value=1.5e-36 Score=291.19 Aligned_cols=187 Identities=21% Similarity=0.334 Sum_probs=171.6
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
|.||+.|||.|.+|+++|+| +|||+++|+.|+.|+|++|.+|++|+..|++++++|.+|++.|++.||++++ ++
T Consensus 32 a~iE~~Yak~L~kl~kk~~~~~e~gTl~~a~~~~~~e~e~~a~~H~~ia~~L~~~~~~l~~f~~~qke~rK~~e~---~~ 108 (242)
T cd07671 32 AQAEERYGKELVQIARKAGGQTEINTLKASFDQLKQQIENIGNSHIQLAGMLREELKSLEEFRERQKEQRKKYEA---VM 108 (242)
T ss_pred HHHHHHHHHHHHHHHhhccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 57999999999999999988 9999999999999999999999999999987789999999999999999864 68
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hc-cCChhHHHHHHHHHHh-------HHHHHHHHHHHHHHHHH
Q psy17650 78 LEIVQTIQSTTLVLQKAKDVYLQKCEELDKLR-----RD-NGSAKDLEKAELKVKK-------AQEDYKTIVDKYALIKE 144 (396)
Q Consensus 78 ~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lr-----ke-~~s~KeieKa~~K~kK-------A~e~Yk~~v~kye~~r~ 144 (396)
.+++++|...++.|++||+.|+++|++++.+. .. .++++|++|++.|++| +.++|+.+|+.|+.++.
T Consensus 109 eK~qk~~~~~~k~l~ksKk~Ye~~Cke~~~a~q~~~k~~~~~t~keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~ 188 (242)
T cd07671 109 ERVQKSKVSLYKKTMESKKTYEQRCREADEAEQTFERSSSTGNPKQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKART 188 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999998853 12 4799999999999988 56789999999999999
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhccCCC--------CCcchHhHHHHHHHhhc
Q psy17650 145 DFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAG 191 (396)
Q Consensus 145 ~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIe 191 (396)
+|+++|..+|+.||++|++||.| +|..+| .|..+|++|+++|.+||
T Consensus 189 ~w~~~~~~~~~~~Q~lEeeRi~f-~K~~lw~~~n~~s~~Cv~dD~~~e~~r~~le 242 (242)
T cd07671 189 EWETEHILTCEVFQLQEDDRITI-LRNALWVHCNHFSMQCVKDDELYEEVRTTLE 242 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHhHHHHcCcHHHHHHHHHhcC
Confidence 99999999999999999999984 666654 27799999999999986
No 6
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=100.00 E-value=5.3e-36 Score=287.04 Aligned_cols=184 Identities=20% Similarity=0.264 Sum_probs=166.8
Q ss_pred ChhhHHHHHHHHHHHHHhC-C---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCc
Q psy17650 1 ANIEENNSKLFGKLAKQSG-G---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGP 76 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~-~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~ 76 (396)
|.||+.|||.|.+|+|+|. | +|||+++|+.|+.|+|++|.+|++|++.|.+++++|.+|++.|++.||++++ +
T Consensus 32 A~IE~~YaK~L~kLskk~~~g~~E~GTl~~sw~~~~~E~e~~a~~H~~la~~L~~~~~~~~~f~~~qk~~rKk~e~---~ 108 (240)
T cd07672 32 ASIEEKYGKELLNLSKKKPCGQTEINTLKRSLDVFKQQIDNVGQSHIQLAQTLRDEAKKMEDFRERQKLARKKIEL---I 108 (240)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 6899999999999999975 3 9999999999999999999999999999988888999999999999999865 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCChhHHHHHHHHHHhHHH-------HHHHHHHHHHHHH
Q psy17650 77 TLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR------DNGSAKDLEKAELKVKKAQE-------DYKTIVDKYALIK 143 (396)
Q Consensus 77 ~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk------e~~s~KeieKa~~K~kKA~e-------~Yk~~v~kye~~r 143 (396)
+.+++++|...++.+++||++|+++|++.+.++. ..+++||++|++.|++|+.+ +|+.+|+.|+.++
T Consensus 109 ~ek~~K~~~~~~k~~~ksKk~Ye~~Cke~~~a~~~~~~~~~~~~~ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~ 188 (240)
T cd07672 109 MDAIHKQRAMQFKKTMESKKNYEQKCRDKDEAEQAVNRNANLVNVKQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIR 188 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889999999999999999999999999988764 23689999999999987654 7999999999999
Q ss_pred HHHHHHHHHHHHHHhhccccchhhhhccCCC--------CCcchHhHHHHHHH
Q psy17650 144 EDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------NTNQISASVDELRV 188 (396)
Q Consensus 144 ~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~ 188 (396)
.+|+++|..+|+.||++|++||.| +|..+| .|..+|++|+++|.
T Consensus 189 ~~w~~~~~~~c~~fq~lEeeRi~f-~k~~lw~~~n~~s~~Cv~~D~~~e~~r~ 240 (240)
T cd07672 189 EDWQKEHVKACEFFEKQECERINF-FRNAVWTHVNQLSQQCVTSDEMYEEVRK 240 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHcCcHHHHHHHhC
Confidence 999999999999999999999984 666654 27799999999873
No 7
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=100.00 E-value=1.3e-35 Score=285.10 Aligned_cols=190 Identities=18% Similarity=0.250 Sum_probs=165.9
Q ss_pred ChhhHHHHHHHHHHHHHhCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-----h
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKK-----H 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~-----h 67 (396)
|.||+.|||.|++|||+|.+ ||||+++|++|+.|+|++|++|++|++.| .|+++.|..|+++++++ -
T Consensus 32 A~IE~~Yak~L~~~akkw~~~ie~gpeyGTl~~aw~~~~~Eae~~s~~H~~l~~~L~~e~~e~ir~wQKe~~hk~~~~~~ 111 (258)
T cd07679 32 ARIEKVYAQQLTEWAKRWRQLVEKGPQYGTVEKAWCALMSEAEKVSELHLEVKASLMNEDFEKIKNWQKEAFHKQMMGGF 111 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68999999999999999844 99999999999999999999999999999 57789999999998643 3
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-cCChhHHHHHHHHHHhHH-------HHH
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-------D-NGSAKDLEKAELKVKKAQ-------EDY 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------e-~~s~KeieKa~~K~kKA~-------e~Y 132 (396)
|..++.+++|.+|+|+|.+.++.+++||++||++|++.+.+.. + .+++++++|++.|++|+. +.|
T Consensus 112 Ke~k~~e~~f~KaQKpw~k~~kkv~~aKk~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~~~k~~k~~~~~~k~~~~Y 191 (258)
T cd07679 112 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAYHTACKEEKLATSREANSKADPALNPEQLKKLQDKVEKCKQDVLKTKEKY 191 (258)
T ss_pred HHHhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568889999999999999999999999999999999887732 1 368999999999887765 469
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCC-------C--CCcchHhHHHHHHHhhc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLS-------A--NTNQISASVDELRVTAG 191 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~-------~--~~~~~~as~eELr~sIe 191 (396)
+..|+.++.++.+|+++|...|++||+.|.+||.| +|..+ | ++..+.++|.+|.++|.
T Consensus 192 ~~~l~~L~~~~~~y~e~m~~~fe~~Q~~E~eRi~F-~K~~l~~~~~~l~i~~~~~~~~i~~~L~~~i~ 258 (258)
T cd07679 192 EKSLKELDQTTPQYMENMEQVFEQCQQFEEKRLRF-FREVLLEVQKHLDLSNVASYKNIYRELEQSIK 258 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHccchhhhhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999973 33333 3 24478889999998873
No 8
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=2.4e-34 Score=274.53 Aligned_cols=170 Identities=23% Similarity=0.339 Sum_probs=157.8
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCc
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHKLVKEEQGP 76 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hKk~ke~~~~ 76 (396)
|.||+.|||.|.+||++..+ +|||+++|+.|+.++|++|.+|.+|+++|. |+.++|..|++++++.||++++ +
T Consensus 32 a~IEe~Yak~L~klak~~~~~~e~Gtl~~sw~~~~~e~E~~a~~H~~la~~L~~ev~~~l~~f~~~~~k~~k~~e~---~ 108 (233)
T cd07649 32 IKIEEEYAKNLSKLSQSSLAAQEEGTLGEAWAQVKKSLADEAEVHLKFSSKLQSEVEKPLLNFRENFKKDMKKLDH---H 108 (233)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 57999999999999999877 999999999999999999999999999995 6669999999999998888854 6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 77 TLEIVQTIQSTTLVLQKAKDVYLQKCEELDKL------RRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRM 150 (396)
Q Consensus 77 ~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~l------rke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m 150 (396)
+.+++++|+++++++.|||+.|+++|+|+|.. .++++++++++|++.|++||.++|+.+|++|+.++.+|+++|
T Consensus 109 ~~k~~K~~~~~~~~~~kaKk~y~~~cke~e~~~~~~~~~k~~~s~~~~~K~~~K~~Ka~~e~~~~ve~y~~~r~~we~~m 188 (233)
T cd07649 109 IADLRKQLASRYAAVEKARKALLERQKDLEGKTQQLEIKLSNKTEEDIKKARRKSTQAGDDLMRCVDLYNQAQSKWFEEM 188 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999874 345789999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccchhhhhccCCC
Q psy17650 151 STSCKIRNDDRDHKIHVEIKPLSA 174 (396)
Q Consensus 151 ~~~cq~Fqd~E~~Ri~v~ik~~~~ 174 (396)
...|+.||+.|++||. +++.+++
T Consensus 189 ~~~~~~~Q~~Ee~Rl~-~lk~~L~ 211 (233)
T cd07649 189 VTTSLELERLEVERIE-MIRQHLC 211 (233)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999999997 5666665
No 9
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=100.00 E-value=7.4e-34 Score=274.14 Aligned_cols=188 Identities=17% Similarity=0.289 Sum_probs=164.0
Q ss_pred ChhhHHHHHHHHHHHHHhCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh--
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLV-- 70 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~-- 70 (396)
|.||+.|||.|.+||++|.+ ||||+++|++|++|+|++|++|++|++.| .|++++|..|+++++ ||.+
T Consensus 32 A~IE~~YAk~L~~lakk~~~~~e~g~eyGTL~~sw~~~~~e~E~ia~~H~~l~~~L~~E~~e~ir~~QKe~~--hk~~~~ 109 (258)
T cd07681 32 AKIEKGYAQQLSDWARKWRGIVEKGPQYGTLEKAWHAFLTAAERLSEIHLELRENLVGEDSEKVRAWQKEAF--HKQMIG 109 (258)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHhh
Confidence 68999999999999999955 89999999999999999999999999999 688899999999985 4443
Q ss_pred -----hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-cCChhHHHHHHHHHHhHH-------H
Q psy17650 71 -----KEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-------D-NGSAKDLEKAELKVKKAQ-------E 130 (396)
Q Consensus 71 -----ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------e-~~s~KeieKa~~K~kKA~-------e 130 (396)
|+.+++|.+++|+|.+++..++++|++||++|++.+.+.. + .+++++++|++.|++||. +
T Consensus 110 g~ke~K~~e~~f~kaqK~w~k~~kk~~~sKk~Y~~~ck~e~~a~~~e~~~k~~~~~~~~q~~K~~~kleK~~~~~~k~~~ 189 (258)
T cd07681 110 GFRESKEAEEGFRKAQKPWVKKLKEVESSKKGYHAARKDERTAQTRETHAKADSTVSQEQLRKLQDRVEKCTQEAEKAKE 189 (258)
T ss_pred hhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667789999999999999999999999999988655431 1 368999999998887765 4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccC-------CC--CCcchHhHHHHHHHhhc
Q psy17650 131 DYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPL-------SA--NTNQISASVDELRVTAG 191 (396)
Q Consensus 131 ~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~-------~~--~~~~~~as~eELr~sIe 191 (396)
.|++.|+.++.++.+|+++|...|+.||++|++||.+ +|.. +| +++++.++|.+|.++|.
T Consensus 190 ~Y~~~v~~L~~~~~~w~e~m~~~~d~~Q~~EeeRi~f-lK~~L~~~~~~l~~~~~~~~~~~~~~l~~~i~ 258 (258)
T cd07681 190 QYEKALEELNRYNPRYMEDMEQAFEICQEAERKRLCF-FKEMLLDLHQHLDLSSSDSFHALYRDLHQTIS 258 (258)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhccccHHHHHHHHHhhcC
Confidence 6999999999999999999999999999999999963 4433 33 46789999999999983
No 10
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=100.00 E-value=1.5e-33 Score=269.40 Aligned_cols=184 Identities=21% Similarity=0.345 Sum_probs=167.9
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
|.||+.|||.|.+|+|++.+ +|||.++|+.|+.++|++|..|.+|++.|+++++++.+|++++++.||++++ .+
T Consensus 32 a~iE~eYak~L~kLak~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~la~~L~~~v~~l~~~~~~~~~~~K~~~~---~~ 108 (239)
T cd07647 32 AKAEEDYGKALLKLSKSAGPGDEIGTLKSSWDSLRKETENVANAHIQLAQSLREEAEKLEEFREKQKEERKKTED---IM 108 (239)
T ss_pred HHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH
Confidence 57999999999999999977 9999999999999999999999999999988889999999999999999876 46
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccCChhHHHHHHHHHHhH-------HHHHHHHHHHHHHHHH
Q psy17650 78 LEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR------DNGSAKDLEKAELKVKKA-------QEDYKTIVDKYALIKE 144 (396)
Q Consensus 78 ~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk------e~~s~KeieKa~~K~kKA-------~e~Yk~~v~kye~~r~ 144 (396)
.+++++|+..+..|.|||+.|+.+|++.|.++. .+++++|++|++.|++|+ .++|+..|.+|+.++.
T Consensus 109 ~k~qk~~~~~~~~l~KaKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~ 188 (239)
T cd07647 109 KRSQKNKKELYKKTMKAKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARV 188 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999998752 357899999999998885 5789999999999999
Q ss_pred HHHHHHHHHHHHHhhccccchhhhhccCCC--------CCcchHhHHHHHHH
Q psy17650 145 DFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------NTNQISASVDELRV 188 (396)
Q Consensus 145 ~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~ 188 (396)
+|+++|...|+.||++|++||. ++|..+| .|..++++|+++|.
T Consensus 189 ~~~~~~~~~~~~~Q~lEe~Ri~-~lk~~l~~y~n~is~~cv~~d~~~e~~r~ 239 (239)
T cd07647 189 EWESEHATACQVFQNMEEERIK-FLRNALWVHCNLGSMQCVKLDEMYEDVRK 239 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHccchHHHHHhhC
Confidence 9999999999999999999997 5766664 27799999999874
No 11
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=100.00 E-value=6.5e-32 Score=257.16 Aligned_cols=183 Identities=22% Similarity=0.338 Sum_probs=168.2
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCc
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHKLVKEEQGP 76 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hKk~ke~~~~ 76 (396)
|.||+.|||.|.+|||++.+ +|||.++|+.|+.++|.+|..|.++++.|. +++++|..|.+++.+.||++++ .
T Consensus 32 a~iE~eYak~L~kLakk~~~~~~~gsl~~a~~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~~rK~~~~---~ 108 (236)
T cd07651 32 ASIEEEYAKRLEKLSRKSLGGSEEGGLKNSLDTLRLETESMAKSHLKFAKQIRQDLEEKLAAFASSYTQKRKKIQS---H 108 (236)
T ss_pred HHHHHHHHHHHHHHHccccCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 58999999999999999977 999999999999999999999999999995 7889999999999988888765 5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHH
Q psy17650 77 TLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD--NGSAKDLEKAELKVKKAQ-------EDYKTIVDKYALIKEDFE 147 (396)
Q Consensus 77 ~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke--~~s~KeieKa~~K~kKA~-------e~Yk~~v~kye~~r~~wE 147 (396)
+.++++.|+..+..|.|||+.|+++|++++.++.+ .++++|++|++.|++|+. ++|+..|..|+.++..|+
T Consensus 109 ~~k~~k~~~~~~~~l~KaK~~Y~~~c~~~e~~~~~~~~~~~ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~ 188 (236)
T cd07651 109 MEKLLKKKQDQEKYLEKAREKYEADCSKINSYTLQSQLTWGKELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWN 188 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999875 468899999999999986 569999999999999999
Q ss_pred HHHHHHHHHHhhccccchhhhhccCCC--------CCcchHhHHHHHH
Q psy17650 148 KRMSTSCKIRNDDRDHKIHVEIKPLSA--------NTNQISASVDELR 187 (396)
Q Consensus 148 ~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr 187 (396)
++|...|+.||++|++||. ++|..++ .|..++++|+++|
T Consensus 189 ~~~~~~~~~~Q~lEe~Ri~-~lk~~l~~~a~~~s~~cv~~d~~~e~~r 235 (236)
T cd07651 189 REWKAALDDFQDLEEERIQ-FLKSNCWTFANNISTLCVDDDESCERIR 235 (236)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCcHHHHHHhh
Confidence 9999999999999999997 5776553 3779999999987
No 12
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=99.98 E-value=2.4e-31 Score=257.04 Aligned_cols=190 Identities=17% Similarity=0.260 Sum_probs=163.4
Q ss_pred ChhhHHHHHHHHHHHHHhCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-----h
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKK-----H 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~-----h 67 (396)
|.||+.||+.|.+|||+|.+ +|||..+|+.|+.|+|.+|..|.+|++.| .+++..|..|+++++++ -
T Consensus 32 A~IE~~Yak~L~~Lakk~~~~~~~~~~~Gtl~~aw~~i~~etE~ia~~H~~la~~L~~e~~e~~r~~qk~~~~k~~~~~~ 111 (258)
T cd07680 32 AKIEKAYGQQLTDWAKRWRQLIEKGPQYGSLERAWGAIMTEADKVSELHQEVKNNLLNEDLEKVKNWQKDAYHKQIMGGF 111 (258)
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh
Confidence 67999999999999999843 89999999999999999999999999999 68889999999987643 2
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-cCChhHHHHHHHHHHhHH-------HHH
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-------D-NGSAKDLEKAELKVKKAQ-------EDY 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------e-~~s~KeieKa~~K~kKA~-------e~Y 132 (396)
|..|+.+++|.+++|+|.+.++.|++||+.||++|++.+.+.. + +++++|++|++.|+.++. ++|
T Consensus 112 ke~K~~e~~~~KaQK~~~k~~k~v~~sKk~Ye~~Cke~~~A~~~~~~a~~d~~~s~~q~eK~~~k~~k~~~~~~~sk~~Y 191 (258)
T cd07680 112 KETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEEKLAMTREANSKAEQSVTPEQQKKLQDKVDKCKQDVQKTQEKY 191 (258)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2446678899999999999999999999999999999987742 2 379999999999887754 579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCC-------C--CCcchHhHHHHHHHhhc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLS-------A--NTNQISASVDELRVTAG 191 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~-------~--~~~~~~as~eELr~sIe 191 (396)
...|..++..+..|+++|...|++||++|++||.+ ++..+ | .++.+.++|.+|.++|.
T Consensus 192 ~~~l~~ln~~~~~y~~~m~~vfd~~Q~~Ee~Ri~f-lk~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~ 258 (258)
T cd07680 192 EKVLDDVGKTTPQYMENMEQVFEQCQQFEEKRLVF-LKEVLLDIKRHLNLAESSSYAHVYRELEQTIR 258 (258)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHcCcccchhHHHHHHHHHhhcC
Confidence 99999999999999999999999999999999963 33333 3 24477888888888773
No 13
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=99.97 E-value=3.4e-30 Score=246.66 Aligned_cols=169 Identities=20% Similarity=0.255 Sum_probs=152.8
Q ss_pred ChhhHHHHHHHHHHHHHh---CC--CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhcc
Q psy17650 1 ANIEENNSKLFGKLAKQS---GG--SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQ 74 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka---~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~ 74 (396)
|.||+.|||.|.+||++| ++ .|||.++|+.|+.|+|.+|.+|.+|++.| .|++++|..|+++|++.||.+++
T Consensus 32 a~IE~~YAK~L~kLa~k~~k~~~~~~Gtl~~aw~~~~~e~e~~a~~H~~la~~L~~ev~~~l~~~~~~~~k~rK~~~~-- 109 (239)
T cd07658 32 AELELNYAKGLSKLSGKLSKASKSVSGTLSSAWTCVAEEMESEADIHRNLGSALTEEAIKPLRQVLDEQHKTRKPVEN-- 109 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 579999999999999986 23 89999999999999999999999999999 58889999999999999999865
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---------------------ccCChhHHHHHHHHHHhHHH---
Q psy17650 75 GPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR---------------------DNGSAKDLEKAELKVKKAQE--- 130 (396)
Q Consensus 75 ~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk---------------------e~~s~KeieKa~~K~kKA~e--- 130 (396)
.+.+++++|+.....+.|+|+.|+++|+|.|.++. ..+++|+++|++.|++||.+
T Consensus 110 -~~~k~qk~~~~~~~~~~k~kk~y~~~~kE~e~a~~~~~~~~~~~~~~~~~~~~~k~~~~~~k~~~Kl~~k~~ka~~~~~ 188 (239)
T cd07658 110 -EVDKAAKLLTDWRSEQIKVKKKLHGLARENEKLQDQVEDNKQSCTKQKMLNKLKKSAEVQDKEDEKLEAKRKKGEESRL 188 (239)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHhhhccccccchhhHHHHHHHHHHHHHHHH
Confidence 57899999999999999999999999999997753 13689999999999888754
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCC
Q psy17650 131 ----DYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLS 173 (396)
Q Consensus 131 ----~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~ 173 (396)
+|..+++.++.++.+|++.|...|++||+.|.+||. ++|.++
T Consensus 189 k~e~~y~~~~~~l~~~~~~~~~~~~~~~~~~Q~~E~~rl~-~~k~~l 234 (239)
T cd07658 189 KAENEYYTCCVRLERLRLEWESALRKGLNQYESLEEERLQ-HLKHSL 234 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 799999999999999999999999999999999997 455544
No 14
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=99.97 E-value=1.1e-29 Score=245.44 Aligned_cols=189 Identities=19% Similarity=0.282 Sum_probs=161.7
Q ss_pred ChhhHHHHHHHHHHHHHhCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-----h
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-------SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKK-----H 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-------~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~-----h 67 (396)
|.||+.|||.|.+||++|.+ +|||..+|+.|+.|+|.+|..|.+|++.|. +++++|..|+.++.++ +
T Consensus 32 a~IE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~~~~e~e~~a~~H~~l~~~L~~~v~~~i~~~~~e~~~k~~~~~~ 111 (258)
T cd07655 32 AEIEKAYAKKLKEWAKKWRDLIEKGPEYGTLETAWKGLLSEAERLSELHLSIRDKLLNDVVEEVKTWQKENYHKSMMGGF 111 (258)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 68999999999999999743 899999999999999999999999999995 6778999999876433 4
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccCChhHHHHHHHHHHhH-------HHHH
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR--------DNGSAKDLEKAELKVKKA-------QEDY 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk--------e~~s~KeieKa~~K~kKA-------~e~Y 132 (396)
|..++.++++.+++++|+..++.|.|||++|+..|++.|.++. .+++++|++|++.|++|+ .++|
T Consensus 112 ke~K~~e~~~~kaqk~~~~~~~~l~kaKk~Y~~~cke~e~a~~~~~~~~~d~~~~~~eleK~~~k~~k~~~~~~~~~~~Y 191 (258)
T cd07655 112 KETKEAEDGFAKAQKPWAKLLKKVEKAKKAYHAACKAEKSAQKQENNAKSDTSLSPDQVKKLQDKVEKCKQEVSKTKDKY 191 (258)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566677889999999999999999999999999999988743 146789999999888775 4579
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCC---------CcchHhHHHHHHHhh
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSAN---------TNQISASVDELRVTA 190 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~~---------~~~~~as~eELr~sI 190 (396)
...|..++..+..|+++|...|+.||++|++||. .+|..+++ +++...+|.+|..+|
T Consensus 192 ~~~l~~~n~~~~~y~~~m~~~~~~~Q~lEe~Ri~-~lk~~l~~y~~~l~~~~~~~~~~~~~~~~~~~ 257 (258)
T cd07655 192 EKALEDLNKYNPRYMEDMEQVFDKCQEFEEKRLD-FFKEILLSYHRHLDLSTNPSFKAIYRDLQQTI 257 (258)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhHHHHHHHHHhhc
Confidence 9999999999999999999999999999999997 46666641 335666777776665
No 15
>KOG2856|consensus
Probab=99.97 E-value=6.6e-30 Score=251.90 Aligned_cols=198 Identities=18% Similarity=0.252 Sum_probs=168.8
Q ss_pred ChhhHHHHHHHHHHHHHhCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-----h
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKK-----H 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~-----h 67 (396)
|.||+.||++|+.|||+|++ |||+..+|..|.+|+|+|+.+|+++...| +|++..|..|+++..++ .
T Consensus 41 A~IEk~YaqqL~~wakkWr~lvekgpqyGt~e~aW~~~~teaerlS~lH~evKd~L~nd~~e~iktwqK~a~H~~vm~G~ 120 (472)
T KOG2856|consen 41 ARIEKAYAQQLTDWAKKWRQLVEKGPQYGTVEKAWNAFMTEAERLSELHLEVKDNLINDDVEKIKTWQKEAYHKQVMGGF 120 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhHHHHhcch
Confidence 67999999999999999977 99999999999999999999999999999 79999999999997633 3
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--h------ccCChhHHHHHHHHHHhHHHH-------H
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLR--R------DNGSAKDLEKAELKVKKAQED-------Y 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lr--k------e~~s~KeieKa~~K~kKA~e~-------Y 132 (396)
|..++.+++|.+|+|+|.++...|+++|+.||..|++...+. . .++++.++.|++.+.+|+.++ |
T Consensus 121 KE~ke~ED~FrKAQKPWaK~l~evE~ak~~yh~ack~EksA~~re~n~kaDsSvspeq~kKlqdrveK~k~evqktkekY 200 (472)
T KOG2856|consen 121 KETKEAEDGFRKAQKPWAKLLKEVEAAKKAYHAACKEEKSALTREQNAKADSSVSPEQLKKLQDRVEKCKQEVQKTKEKY 200 (472)
T ss_pred hhhHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445888999999999999999999999999999999954331 1 247999999888887776654 6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHhhccccchh---hhhccCCC--CCcchHhHHHHHHHhhcccccCCc
Q psy17650 133 KTIVDKYALIKEDFEKRMS---TSCKIRNDDRDHKIH---VEIKPLSA--NTNQISASVDELRVTAGNLTLSPL 198 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~---~~cq~Fqd~E~~Ri~---v~ik~~~~--~~~~~~as~eELr~sIeni~v~~~ 198 (396)
.+.+..++.....|++.|. +.||.||..|+.||+ +.++.++| .+.++.++|++|.++|.+.+-+..
T Consensus 201 ektl~el~~yt~~YmE~MeqvFe~CQ~fE~~Rl~Ffkeil~~v~~hldl~~~~~~~~ly~eleqsIr~Ad~eeD 274 (472)
T KOG2856|consen 201 EKTLAELNKYTPVYMEDMEQVFEQCQQFEEKRLQFFKEILLKVQRHLDLSRNSSYSGLYRELEQSIRAADAEED 274 (472)
T ss_pred HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHhccchHHH
Confidence 6666555666677888887 899999999999985 44556665 577999999999999999998763
No 16
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=99.90 E-value=1e-22 Score=194.74 Aligned_cols=184 Identities=18% Similarity=0.263 Sum_probs=157.0
Q ss_pred ChhhHHHHHHHHHHHHHhCC--------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG--------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVK 71 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~--------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~k 71 (396)
|.||+.|||.|.+|++++.+ .||+..+|+.|..+++.+|..|.++++.| .+++.+|..|.+++.+.||+++
T Consensus 32 a~iE~eYak~L~kLa~k~~~~~~~~~~~~~s~~~aw~~i~~e~~~~a~~H~~~a~~l~~~v~~~l~~~~~~~~~~rK~~~ 111 (251)
T cd07653 32 AAIEQEYAKKLRKLVKKYLPKKKEEDEYSFSSVKAFRSILNEVNDIAGQHELIAENLNSNVCKELKTLISELRQERKKHL 111 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998854 46999999999999999999999999999 5788999999999999999987
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccCChhHHHHHHHHHHh-------HHHHHHHHH
Q psy17650 72 EEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR--------DNGSAKDLEKAELKVKK-------AQEDYKTIV 136 (396)
Q Consensus 72 e~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk--------e~~s~KeieKa~~K~kK-------A~e~Yk~~v 136 (396)
+ .+.++++.|+..+..+.|+|+.|+..|++.+.++. .+.+.++++|++.++.+ |.++|..+|
T Consensus 112 ~---~~~kl~~~~~~~~~~l~kskk~Y~~~~ke~~~a~~k~~~~~~~~~~s~~~~eK~~~k~~k~~~~~~~a~~~Y~~~l 188 (251)
T cd07653 112 S---EGSKLQQKLESSIKQLEKSKKAYEKAFKEAEKAKQKYEKADADMNLTKADVEKAKANANLKTQAAEEAKNEYAAQL 188 (251)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 46789999999999999999999999999988752 13577899998887765 667899999
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHhhccccchhhhhccCCCC--------CcchHhHHHHHHH
Q psy17650 137 DKYALI-KEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSAN--------TNQISASVDELRV 188 (396)
Q Consensus 137 ~kye~~-r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~~--------~~~~~as~eELr~ 188 (396)
..++.. +.-|...|...++.||++|.+||. .++.+++. ++.+..+++.++.
T Consensus 189 ~~~N~~~~~~y~~~~p~~~~~~q~le~~ri~-~~k~~l~~~~~~~~~~~~~~~~~~~~i~~ 248 (251)
T cd07653 189 QKFNKEQRQHYSTDLPQIFDKLQELDEKRIN-RTVELLLQAAEIERKVIPIIAKCLDGIKK 248 (251)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH-HHHHHHHHHHHHHHHHhHHHHHHHHhHhh
Confidence 999888 556899999999999999999997 67777752 3344455555443
No 17
>cd07650 F-BAR_Syp1p_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of yeast Syp1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Syp1p is associated with septins, a family of GTP-binding proteins that serve as elements of septin filaments, which are required for cell morphogenesis and division. Syp1p regulates cell-cycle dependent septin cytoskeletal dynamics in yeast. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCH domain Only (FCHO) proteins and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.88 E-value=7.5e-22 Score=187.94 Aligned_cols=169 Identities=15% Similarity=0.218 Sum_probs=133.8
Q ss_pred ChhhHHHHHHHHHHHHHhC--C---CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhcc
Q psy17650 1 ANIEENNSKLFGKLAKQSG--G---SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHKLVKEEQ 74 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~--~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hKk~ke~~ 74 (396)
|.||+.|||.|.|||++|. + +|+|..+|+.++.++|.+|.+|.+|+++|. |+.+++..|+..++.. +.+
T Consensus 32 a~IE~~Yak~L~kLakk~~~~~~~e~g~~~~~w~~i~~e~e~~a~~H~~la~~l~~~ve~~l~~~~~~~~~~-~~l---- 106 (228)
T cd07650 32 RRLERQYVQGLRKLARRNEPLNKSLLGVFQNPWLTIESETEFIAASHGELAQRIETDVEEPLRDFATSTEFM-NTL---- 106 (228)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHH-HHh----
Confidence 5799999999999999984 3 999999999999999999999999999995 6668999999998532 322
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHH
Q psy17650 75 GPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTI-VDKYALIKEDFEKRMSTS 153 (396)
Q Consensus 75 ~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~-v~kye~~r~~wE~~m~~~ 153 (396)
+.++.+. ..+|+. + ..+|..+|+..|..|+.+..... |.+|+.++.+||.+|..+
T Consensus 107 ----~~~q~l~------~~~k~~--------~------e~~k~~~Kl~kk~~k~~~~~~~~~~~~l~~~~~~We~~~~~~ 162 (228)
T cd07650 107 ----DDDQNLS------NLAKEL--------D------ESQKKWDKLKKKHSKASSKAVSAAVSDLEEARQQWDSQAPFL 162 (228)
T ss_pred ----HHHHHHH------HHHHHH--------H------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1111111 111111 1 13456667777777766554444 999999999999999999
Q ss_pred HHHHhhccccchhhhhccCCC--------CCcchHhHHHHHHHhhcccccCCcc
Q psy17650 154 CKIRNDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 154 cq~Fqd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIeni~v~~~~ 199 (396)
|+.||+.|++||. ++|..++ .+..++++|+++++++++|+++...
T Consensus 163 ~e~fQ~leeeRl~-~lk~~l~~y~~~~sd~~~~~~~~~E~~~~~l~~~~~e~dI 215 (228)
T cd07650 163 FELLQAIDEERLN-HLKDVLLQFQTHESDYALRTTESAEECMNQLLEFDTEDEI 215 (228)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhHhhHHHHHhhHHHHHHHHHHhCCChHHHH
Confidence 9999999999997 6888875 2558899999999999999999754
No 18
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.85 E-value=6.7e-20 Score=177.25 Aligned_cols=170 Identities=16% Similarity=0.265 Sum_probs=149.1
Q ss_pred ChhhHHHHHHHHHHHHHhCC----------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG----------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKL 69 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~----------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk 69 (396)
|.||..||+.|.+|+|+|.. .+|+..+|.++..|++.+|..|..++..| .+++.+|..+..+.+..||.
T Consensus 32 a~IEkeYakkL~~L~kKy~~kk~~~~~~~~~~t~~~aw~~~l~e~~~~A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~ 111 (253)
T cd07676 32 TEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCRAFLMTLNEMNDYAGQHEVISENLASQIIVELTRYVQELKQERKS 111 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999844 46899999999999999999999999999 68999999999988888887
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cCChhHHHHHHHHHH-------hHHHHHHH
Q psy17650 70 VKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD--------NGSAKDLEKAELKVK-------KAQEDYKT 134 (396)
Q Consensus 70 ~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke--------~~s~KeieKa~~K~k-------KA~e~Yk~ 134 (396)
.... ..+++++|.+.+..|.|||+.|+..|++.|.++.. +.+..+++|++.++. ++..+|..
T Consensus 112 ~~~~---~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~ 188 (253)
T cd07676 112 HFHD---GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKAEYSS 188 (253)
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6432 47899999999999999999999999999988641 358889999887754 45668999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhhccccchhhhhccCCC
Q psy17650 135 IVDKYALIK-EDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA 174 (396)
Q Consensus 135 ~v~kye~~r-~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~ 174 (396)
.+.+++... .-|.+.|-+..+.+|++|+.||. .++.++.
T Consensus 189 ~l~~~N~~q~~~Y~e~mp~vfd~lQ~lee~Ri~-~l~e~l~ 228 (253)
T cd07676 189 YLQKFNKEQHEHYYTHIPNIFQKIQEMEERRIG-RVGESMK 228 (253)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 999998888 89999999999999999999996 5777764
No 19
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=99.82 E-value=1.3e-18 Score=166.42 Aligned_cols=161 Identities=21% Similarity=0.291 Sum_probs=137.9
Q ss_pred ChhhHHHHHHHHHHHHHhCC--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG--------SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKE 72 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~--------~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke 72 (396)
|.||+.|||.|.||||++.+ .|||..+|+.++.++|.+|..|..+++.|+.++.+|..|..+..+.||++++
T Consensus 32 a~iEeeYak~L~KLak~~~~~~~~~~~~~gs~~~a~~~il~~~e~lA~~h~~~a~~L~~~~~eL~~l~~~~e~~RK~~ke 111 (234)
T cd07652 32 AAIEEEHARGLKKLARTTLDTYKRPDHKQGSFSNAYHSSLEFHEKLADNGLRFAKALNEMSDELSSLAKTVEKSRKSIKE 111 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998864 7999999999999999999999999999999999999999999999999987
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc------------CChhHHHH-HHHHHHhHHHHHHHHHHHH
Q psy17650 73 EQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDN------------GSAKDLEK-AELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 73 ~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~------------~s~KeieK-a~~K~kKA~e~Yk~~v~ky 139 (396)
. ..++++.++.....+.|||..|++.|.|.|+++... .+.++.|+ +..|+..|..+|+.+|..+
T Consensus 112 ~---~~k~~k~~~~a~~~leKAK~~Y~~~c~e~Ekar~~~~~~~~~~~~k~~~~~~~~Ee~~~~K~~~A~~~Y~~~v~~~ 188 (234)
T cd07652 112 T---GKRAEKKVQDAEAAAEKAKARYDSLADDLERVKTGDPGKKLKFGLKGNKSAAQHEDELLRKVQAADQDYASKVNAA 188 (234)
T ss_pred h---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccccchhhHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 347888999999999999999999999999997531 12334443 6668888999999999999
Q ss_pred HHHHHHHHH-HHHHHHHHHhhccccc
Q psy17650 140 ALIKEDFEK-RMSTSCKIRNDDRDHK 164 (396)
Q Consensus 140 e~~r~~wE~-~m~~~cq~Fqd~E~~R 164 (396)
+.-++++.. .+-.....++++..++
T Consensus 189 n~~q~e~~~~~~p~i~~~lq~li~e~ 214 (234)
T cd07652 189 QALRQELLSRHRPEAVKDLFDLILEI 214 (234)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999998864 5557777777754443
No 20
>cd07610 FCH_F-BAR The Extended FES-CIP4 Homology (FCH) or F-BAR (FCH and Bin/Amphiphysin/Rvs) domain, a dimerization module that binds and bends membranes. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. F-BAR domain containing proteins, also known as Pombe Cdc15 homology (PCH) family proteins, include Fes and Fer tyrosine kinases, PACSINs/Syndapins, FCHO, PSTPIP, CIP4-like proteins and srGAPs. Many members also contain an SH3 domain and play roles in endocytosis. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. These tubules have diameters larger than those observed with N-BARs. The F-BAR domains of some members such as NOSTRIN and Rgd1 are important for the subcellular localization of the protein.
Probab=99.78 E-value=2.1e-18 Score=157.54 Aligned_cols=137 Identities=25% Similarity=0.354 Sum_probs=113.6
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhcc
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SG--TFAPLWQVLKTSIEKIATVQVKMMQKVNDLV-KDVCKYTEELQKKHKLVKEEQ 74 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~G--Tl~~sW~~lk~e~Ekla~~H~~La~kL~Eli-K~l~~f~eeQkk~hKk~ke~~ 74 (396)
|.||+.|||.|.|||+++.+ .| ||..+|..++.++|.+|..|..+++.|++++ +++..|...++..||+..+
T Consensus 27 a~iE~eYak~L~kLak~~~~~~~~~~~t~~~~w~~~~~e~~~~a~~h~~~a~~l~~~i~~~~~~~~~~~~~~rk~~~~-- 104 (191)
T cd07610 27 AAIEEEYAKNLQKLAKKFSKKPESGKTSLGTSWNSLREETESAATVHEELSEKLSQLIREPLEKVKEDKEQARKKELA-- 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 57999999999999999976 55 9999999999999999999999999996555 6667777776655665533
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 75 GPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSC 154 (396)
Q Consensus 75 ~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~c 154 (396)
.+.++++.|...|.++++ ++.++|+..+++++..+.+|+..|..+|
T Consensus 105 ---------------~~~~~~k~~~~~~~~~~k-------------------k~~~~y~~~~~~~~~~~~~~~~~~~~~~ 150 (191)
T cd07610 105 ---------------EGEKLKKKLQELWAKLAK-------------------KADEEYREQVEKLNPAQSEYEEEKLNKI 150 (191)
T ss_pred ---------------HHHHHHHHHHHHHHHHHH-------------------hhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 234566666666666544 7888999999999999999999999999
Q ss_pred HHHhhccccchhhhhccCCC
Q psy17650 155 KIRNDDRDHKIHVEIKPLSA 174 (396)
Q Consensus 155 q~Fqd~E~~Ri~v~ik~~~~ 174 (396)
+.||+.++.|+. .++.+++
T Consensus 151 ~~~q~~~e~r~~-~~~~~l~ 169 (191)
T cd07610 151 QAEQEREEERLE-ILKDNLK 169 (191)
T ss_pred HHHHHHHHHHHH-HHHHHHH
Confidence 999999999986 5676664
No 21
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.69 E-value=1.6e-15 Score=146.54 Aligned_cols=170 Identities=14% Similarity=0.226 Sum_probs=147.0
Q ss_pred ChhhHHHHHHHHHHHHHhCC---------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLV 70 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ 70 (396)
|.||..||+.|.+|+|+..+ .+|...+|..+..+.+.+|..|..++..| ..++.+|..|..+.+..||..
T Consensus 32 a~IE~eYakkL~~L~Kky~~KK~~~~e~p~~t~~~s~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~ 111 (252)
T cd07675 32 LEIEQNYAKQLRNLVKKYCPKRSSKDEEPRFTSCLSFYNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMH 111 (252)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 57999999999999998644 58888999999999999999999999999 689999999999998888875
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cCChhHHHHHHHHHH-------hHHHHHHHH
Q psy17650 71 KEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD--------NGSAKDLEKAELKVK-------KAQEDYKTI 135 (396)
Q Consensus 71 ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke--------~~s~KeieKa~~K~k-------KA~e~Yk~~ 135 (396)
- ....++++.|...+..|.|||+.|+..|+|.|.++.. +.+.-+++|++.++. ++..+|...
T Consensus 112 ~---~~~~klqk~l~~~~~~leksKk~Y~~acke~E~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~ 188 (252)
T cd07675 112 L---QEGRKAQQYLDMCWKQMDNSKKKFERECREAEKAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQ 188 (252)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2346789999999999999999999999999988642 357778898887654 456689999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHhhccccchhhhhccCCC
Q psy17650 136 VDKYALIKED-FEKRMSTSCKIRNDDRDHKIHVEIKPLSA 174 (396)
Q Consensus 136 v~kye~~r~~-wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~ 174 (396)
+.+++..... |.+.|-+--+.+|++++.||. .++.+|.
T Consensus 189 L~~~N~~q~k~Y~e~mP~vfd~lQ~leE~Ri~-~l~e~~~ 227 (252)
T cd07675 189 LQNFNGEQHKHFYIVIPQIYKQLQEMDERRTV-KLSECYR 227 (252)
T ss_pred HHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 9999999999 999999888888998889986 5777774
No 22
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=99.54 E-value=1.3e-12 Score=125.54 Aligned_cols=163 Identities=17% Similarity=0.225 Sum_probs=136.0
Q ss_pred ChhhHHHHHHHHHHHHHhCC-------CC-ChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-------SG-TFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVK 71 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-------~G-Tl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~k 71 (396)
|.||..||+.|.+|+++..- .| +...+|..+..++|.+|..|..++..| ..++.+|..+..+-...||+..
T Consensus 32 a~iE~EYA~~L~~L~kq~~k~~~~~~~~~s~~~~sW~~iL~ete~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~rK~~~ 111 (237)
T cd07657 32 AKSDREYASTLGSLANQGLKIEAGDDLQGSPISKSWKEIMDSTDQLSKLIKQHAEALESGTLDKLTLLIKDKRKAKKAYQ 111 (237)
T ss_pred HHHHHHHHHHHHHHHHhhCcCCCcccCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 57999999999999998422 45 558999999999999999999999999 5888999999999888899986
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccCChhHHHHHHHHHH-------hHHHHHHHHH
Q psy17650 72 EEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR--------DNGSAKDLEKAELKVK-------KAQEDYKTIV 136 (396)
Q Consensus 72 e~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk--------e~~s~KeieKa~~K~k-------KA~e~Yk~~v 136 (396)
+. ..++++.+...+..|.|+|+.|+..|++.|.++. .+.+..++||++.++. +|..+|-..+
T Consensus 112 ~~---~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~~~k~~~akNeY~l~l 188 (237)
T cd07657 112 EE---RQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKACRKLHLCHNDYVLAL 188 (237)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54 4567888899999999999999999999998764 1346678898877754 4566899999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHhhccccchh
Q psy17650 137 DKYALIKEDF-EKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 137 ~kye~~r~~w-E~~m~~~cq~Fqd~E~~Ri~ 166 (396)
...+.....| ...|=+--+.+|+++++||.
T Consensus 189 ~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~ 219 (237)
T cd07657 189 LEAQEHEEDYRTLLLPGLLNSLQSLQEEFIT 219 (237)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9998887776 44455667888999999996
No 23
>PF10291 muHD: Muniscin C-terminal mu homology domain; InterPro: IPR018808 The muniscins are a family of endocytic adaptors that is conserved from yeast to humans.This C-terminal domain is structurally similar to mu homology domains, and is the region of the muniscin proteins involved in the interactions with the endocytic adaptor-scaffold proteins Ede1-eps15. This interaction influences muniscin localisation. The muniscins provide a combined adaptor-membrane-tubulation activity that is important for regulating endocytosis.; PDB: 3G9H_A.
Probab=99.53 E-value=3.2e-16 Score=151.99 Aligned_cols=67 Identities=40% Similarity=0.766 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHhhhhccCCCccceEeeecceeecccchhhhhhhCCCCCcceeEEeccccccccccCCCCCC
Q psy17650 324 IPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLI 395 (396)
Q Consensus 324 ~p~a~a~~e~~~~~f~g~~~~~c~v~~~g~~~~sfp~g~~~~~~~~p~~~~l~f~~~~~~~~~~~~pn~~l~ 395 (396)
+||++||+|+|||||||++..+ |+|+|||+|+||++++++|+. +++|+|||.|+++||+|+||+++|
T Consensus 1 ~gl~asi~E~VnA~Fk~g~~~~--v~v~GEv~ls~~~~~~~~~~~---~~~l~~rl~n~~~le~i~pN~~~v 67 (257)
T PF10291_consen 1 PGLNASITETVNAYFKGGQLSK--VKVTGEVALSYPAGISSSLTS---PPPLSFRLNNFSRLEKIAPNPQFV 67 (257)
T ss_dssp -EEEEEEEEEEEEEEETTEEEE--EEEEEEEEEEEE--SSS--------SEEEEEEETGGGEEEEEE-TTTE
T ss_pred CceeEEEEEEEEEEEECCcEEE--EEEEEEEEEecCCChhhcccC---CCcEEEEEcCcchhceeecCHhHe
Confidence 5899999999999999999965 999999999999999999998 789999999999999999999987
No 24
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=99.36 E-value=4.8e-11 Score=114.44 Aligned_cols=169 Identities=15% Similarity=0.192 Sum_probs=126.4
Q ss_pred ChhhHHHHHHHHHHHHHhCC--------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG--------SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHKLVK 71 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~--------~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hKk~k 71 (396)
|.||..||+.|.+|+|+... .+.+..+|..|..++|.+|..|..++..|+ .++..|..+..+-...||...
T Consensus 32 akiEkEYA~~L~~L~kq~~kk~~~~~~~~s~v~~sW~~vl~qte~iA~~~~~~aE~l~~~i~~~l~~l~~~~~~~~k~~~ 111 (234)
T cd07686 32 VKSDKEYASTLQNLCNQVDKESTSQLDYVSNVSKSWLHMVQQTEQLSKIMKTHAEELNSGPLHRLTMMIKDKQQVKKSYI 111 (234)
T ss_pred HHHHHHHHHHHHHHHHHhcccCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999997522 566678999999999999999999999995 788999888666555677663
Q ss_pred hccCchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhc----cCChhHHHHHHHHHHhH-------HHHHHHHHHHH
Q psy17650 72 EEQGPTLEIVQTIQS-TTLVLQKAKDVYLQKCEELDKLRRD----NGSAKDLEKAELKVKKA-------QEDYKTIVDKY 139 (396)
Q Consensus 72 e~~~~~~ea~k~~q~-~~~~l~KaKk~Y~~~CkE~E~lrke----~~s~KeieKa~~K~kKA-------~e~Yk~~v~ky 139 (396)
+. ..+..+-... ....|.|+|+.|++.|++.|.+|+- ...+|..+|++.++.++ ..+|--+|...
T Consensus 112 ~~---~~kl~~e~~~~~~~~l~K~K~~Y~~~~~~~e~ar~K~~~a~~~gk~~~Ka~~k~~~~~~km~~~kN~Yll~i~~a 188 (234)
T cd07686 112 GV---HQQIEAEMYKVTKTELEKLKCSYRQLTKEVNSAKEKYKDAVAKGKETEKARERYDKATMKLHMLHNQYVLAVKGA 188 (234)
T ss_pred HH---HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 22 2344444544 6788999999999999999988752 12335566766665554 45788888888
Q ss_pred HHHHHHHHHH-HHHHHHHHhhccccchhhhhccCC
Q psy17650 140 ALIKEDFEKR-MSTSCKIRNDDRDHKIHVEIKPLS 173 (396)
Q Consensus 140 e~~r~~wE~~-m~~~cq~Fqd~E~~Ri~v~ik~~~ 173 (396)
+.....|-.. +=+.-+.+|+..+.|+. .++.+|
T Consensus 189 N~~k~~Yy~~~lP~lLd~lQ~l~E~rv~-~ln~i~ 222 (234)
T cd07686 189 QLHQHQYYDFTLPLLLDSLQKMQEEMIK-ALKGIL 222 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 8877776444 44666888888888885 455544
No 25
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.31 E-value=1.6e-10 Score=111.42 Aligned_cols=106 Identities=21% Similarity=0.210 Sum_probs=93.5
Q ss_pred ChhhHHHHHHHHHHHHHhCC-------------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-------------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKK 66 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-------------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~ 66 (396)
|.||..||+.|.+|+++..+ ..|.-.+|..|..+++.+|..|..++..| ..++..|..+.++....
T Consensus 32 aeIE~EYs~~L~kL~k~~~~K~~~~~~~~~~~~~~s~~~~W~~lL~qt~~~a~~h~~lse~l~~~i~~~l~~l~~d~~~~ 111 (241)
T cd07656 32 AEIELEYSRSLEKLADRFSSKHKNEKSKREDWSLLSPVNCWNTLLVQTKQESRDHSTLSDIYSNNLVQRLGQMSEDLQRI 111 (241)
T ss_pred HHHHHHHHHHHHHHHHHhccccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 57999999999999996321 67889999999999999999999999999 57889999999998888
Q ss_pred hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17650 67 HKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLR 109 (396)
Q Consensus 67 hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lr 109 (396)
+|++.+. ..++++.+...+..|+++|++|+..|++.+.++
T Consensus 112 ~Kk~~e~---~~~lq~el~~~~~eL~k~kK~Y~~~~~ea~~A~ 151 (241)
T cd07656 112 SKKCREI---GSQLHDELLRVLNELQTAMKTYHTYHAESKSAE 151 (241)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998764 457788899999999999999999999976553
No 26
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=99.09 E-value=6.3e-09 Score=101.68 Aligned_cols=143 Identities=18% Similarity=0.185 Sum_probs=107.6
Q ss_pred ChhhHHHHHHHHHHHHHhCC-----C-----C---ChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-----S-----G---TFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKK 66 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-----~-----G---Tl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~ 66 (396)
|.||..||+.|.+|+|+... . + +.-.+|..+..+++.+|.-|..++..| ..++.++..+..+-...
T Consensus 32 a~IE~EYa~~L~kLakky~~Kk~~~~~~~~~~~~~s~~~~W~~~L~qt~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~ 111 (264)
T cd07654 32 AAIEREYGQALQKLASQFLKREWPGSGELKPEDDRSGYTVWGAWLEGLDAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQ 111 (264)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 58999999999999997643 1 1 346799999999999999999999999 57888898888777667
Q ss_pred hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------ccC--ChhHHHHH----HH----
Q psy17650 67 HKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-------------DNG--SAKDLEKA----EL---- 123 (396)
Q Consensus 67 hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------------e~~--s~KeieKa----~~---- 123 (396)
+|+..+. ...+++.+...+..|.|+|+.|+..|++.+.++. .+. +--+++|+ ..
T Consensus 112 ~Kk~~e~---~~~lq~el~~~~~eL~ksKK~Y~~~~~~~~~ar~K~~~a~~~~~k~~~~~~~sk~~~eK~~~K~~~k~~~ 188 (264)
T cd07654 112 LKKCTEQ---LQRAQAEVQQTVRELSKSRKTYFEREQVAHLAREKAADVQAREARSDLSIFQSRTSLQKASVKLSARKAE 188 (264)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccccchHHHHHHHHHHHHHHHHH
Confidence 8887653 4567778889999999999999999999654431 011 22334443 22
Q ss_pred ---HHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 124 ---KVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 124 ---K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
|+.+|..+|-..+...|.....|
T Consensus 189 ~~~k~~~akNeYll~L~~aN~~q~kY 214 (264)
T cd07654 189 CSSKATAARNDYLLNLAATNAHQDRY 214 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667888887777666655
No 27
>cd07677 F-BAR_FCHSD2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 2 (FCHSD2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 2 (FCHSD2) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=98.85 E-value=1.5e-07 Score=91.42 Aligned_cols=140 Identities=18% Similarity=0.261 Sum_probs=99.8
Q ss_pred ChhhHHHHHHHHHHHHHhCC------------------CCChH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy17650 1 ANIEENNSKLFGKLAKQSGG------------------SGTFA------PLWQVLKTSIEKIATVQVKMMQKVNDLV-KD 55 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~------------------~GTl~------~sW~~lk~e~Ekla~~H~~La~kL~Eli-K~ 55 (396)
|+||..|++.|.+|+++..+ -|.+. .+|..+..++|.+|.-|..++..|.-.+ ++
T Consensus 21 s~IEkEYS~kL~kL~kky~~Kk~k~ss~lsvgd~p~~tpgsle~~~S~~~~W~~~L~~Te~~A~~~~~~ae~l~~~~a~~ 100 (260)
T cd07677 21 LEDEREFSQKIAAIESEYAQKEQKLASQYLKSDWRGMKADERADYRSMYTVWKSFLEGTMQVAQSRINICENYKNLISEP 100 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhccccccccccCccCCCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 57999999999999974321 34454 5899999999999999999999995433 44
Q ss_pred H---HHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----CC-------hhHHHHH
Q psy17650 56 V---CKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDN----GS-------AKDLEKA 121 (396)
Q Consensus 56 l---~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~----~s-------~KeieKa 121 (396)
+ .-+.+++. |+..|. ....++-+...+..|.|+|+.|+..|...+.+|.-. .+ .-.++|.
T Consensus 101 ~k~~r~~ke~~~---Kk~~e~---~~~lq~El~~~~~EL~KaKK~Y~~~cq~~e~~ReK~~~e~K~~~s~~qs~~slqK~ 174 (260)
T cd07677 101 ARTVRLYKEQQL---KRCVDQ---LTKIQAELQETVKDLAKGKKKYFETEQMAHAVREKADIEAKSKLSLFQSRISLQKA 174 (260)
T ss_pred HHHHHHHHHHHH---HHHHHH---HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccccccccchHHHH
Confidence 4 33555554 554432 334455678899999999999999999999876411 10 0022332
Q ss_pred H-----------HHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 122 E-----------LKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 122 ~-----------~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
. .|..+|..+|--++...|.....|
T Consensus 175 ~~K~~~k~~e~n~k~~~ARNeYLl~L~aaNa~~~kY 210 (260)
T cd07677 175 SVKLKARRSECNSKATHARNDYLLTLAAANAHQDRY 210 (260)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHh
Confidence 2 234478888999999988888777
No 28
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=98.79 E-value=3.7e-07 Score=87.32 Aligned_cols=163 Identities=17% Similarity=0.213 Sum_probs=117.6
Q ss_pred hhhHHHHHHHHHHHHHh-----CC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhh
Q psy17650 2 NIEENNSKLFGKLAKQS-----GG-------SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHK 68 (396)
Q Consensus 2 ~IEe~YAKsL~KLAKka-----~~-------~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hK 68 (396)
.-...||..|..++-+- ++ ...+..+|..|..++|.+|..|.++++.|+ .++..|.....+-..-||
T Consensus 33 K~d~eya~~L~~~~~q~~k~~~~~~~~~~~~~s~i~~sW~~il~QTE~isk~~~~~Aeeln~~~~~kLs~L~~~k~~~rK 112 (237)
T cd07685 33 KSDREYSGMLHHMSAQVEKLDRSQHGALSMLSSPISQSWAVLVSQTETLSQVLRKHAEDLNAGPLSKLSLLIRDKQQLRK 112 (237)
T ss_pred HhhHHHHHHHHHHHHhhccccccchhhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 44678999999999872 11 456789999999999999999999999995 666777765444333455
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccCChhHHHHHHHHHHhH-------HHHHHHHHHH
Q psy17650 69 LVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR---DNGSAKDLEKAELKVKKA-------QEDYKTIVDK 138 (396)
Q Consensus 69 k~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk---e~~s~KeieKa~~K~kKA-------~e~Yk~~v~k 138 (396)
.+-+...++-...- ......|+|+|+.|.+.|.+.+.+|. ++...|+.+|+..|+-++ ..+|--.|..
T Consensus 113 ~~~~~~q~i~~e~~--~~t~~eveK~Kk~Y~~~c~~~e~AR~K~ekas~~K~~~K~~EKy~~m~~KL~~~hN~YlL~I~~ 190 (237)
T cd07685 113 TFSEQWQLLKQEYT--KTTQQDIEKLKSQYRSLAKDSAQAKRKYQEASKDKDRDKAKEKYVKSLWKLYALHNEYVLAVRA 190 (237)
T ss_pred HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 55443333332221 34456899999999999999999875 346778888888877776 3467777777
Q ss_pred HHHHHHHHHHHHH-HHHHHHhhccccchh
Q psy17650 139 YALIKEDFEKRMS-TSCKIRNDDRDHKIH 166 (396)
Q Consensus 139 ye~~r~~wE~~m~-~~cq~Fqd~E~~Ri~ 166 (396)
.+.....|-.... +.-+.+|+.-+.|+.
T Consensus 191 An~~kdkyy~q~lP~LLd~lQ~lnE~~v~ 219 (237)
T cd07685 191 AQLHHQHHYQRILPGLLESLQSLHEEMVL 219 (237)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHH
Confidence 7777777744444 444667777677765
No 29
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=98.74 E-value=9.2e-07 Score=86.46 Aligned_cols=141 Identities=17% Similarity=0.175 Sum_probs=104.2
Q ss_pred ChhhHHHHHHHHHHHHHhCC------------CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG------------SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVK---DVCKYTEELQK 65 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~------------~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK---~l~~f~eeQkk 65 (396)
|.||..||+.|.+|+|+..+ ++++...|+++...++..+..|+...+....++. ++.++..++
T Consensus 32 ~~iE~eYa~~L~~L~k~~~~k~~~~~~~e~~~~~~~~s~~~~~~e~~~~a~Q~~~~~~~~~~~~~~e~~~~~r~~ke~-- 109 (263)
T cd07678 32 AAIEREYGQALQRLASQFLKRDWHRGGNETEMDRSVRTVWGAWREGTAATGQGRVTRLEAYRRLRDEAGKTGRSAKEQ-- 109 (263)
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCCchhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhHHHHHH--
Confidence 57999999999999996533 5788889999999999999988877666555555 344666666
Q ss_pred hhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------c---cCChhHHHHHHH-------
Q psy17650 66 KHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR------------D---NGSAKDLEKAEL------- 123 (396)
Q Consensus 66 ~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk------------e---~~s~KeieKa~~------- 123 (396)
.+|+..+. ...+++.+.+.+..|+|+|+.|+..|++.+.++. + ..+..+++|+..
T Consensus 110 ~~KK~~e~---~~~lQ~eL~~~~keL~ksKK~Y~~~~~ea~~A~~K~~e~e~k~~K~~~~~~~sk~~~eK~~~K~~~~~~ 186 (263)
T cd07678 110 VLKKSTEQ---LQKAQAELLETVKELSKSKKLYGQLERVSEVAKEKAADVEARLNKSDHGIFHSKASLQKLSAKFSAQSA 186 (263)
T ss_pred HHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccHHHHHHHHHHHHHHHH
Confidence 56776543 4677888999999999999999999999876642 1 134556676533
Q ss_pred ----HHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 124 ----KVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 124 ----K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
|+.+|..+|-.++...|.-...|
T Consensus 187 ~~~~k~~~arNeYll~L~aaNa~q~~Y 213 (263)
T cd07678 187 EYSQQLQAARNEYLLNLVAANAHLDHY 213 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777776666555
No 30
>cd07683 F-BAR_srGAP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of CNS (central nervous system) tissues. It is an important downstream signaling molecule of Robo1. srGAP1 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-cha
Probab=98.66 E-value=2e-06 Score=83.12 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=97.7
Q ss_pred ChhhHHHHHHHHHHHHHhCC----------------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 1 ANIEENNSKLFGKLAKQSGG----------------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~----------------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
|+||..||+.|.|||++... +-+--.+|..|..+++.+|.-|..|+.-+ +-++-.+....++.
T Consensus 32 AeIE~EYS~~L~KLa~~f~~K~~s~~~~~~~~~~s~~~S~~~~W~~lL~qT~~~sk~h~~LSd~y~~~~~~r~~~~~ed~ 111 (253)
T cd07683 32 AEIESEYSRNLEKLAERFMAKTRSTKDHQQYKKDQNLLSPVNCWYLLLNQVRRESKDHATLSDIYLNNVIMRFMQISEDS 111 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 68999999999999985422 12335699999999999999999999999 57888888888888
Q ss_pred HhhhhhhhhccCchHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-Hh--------hcc-------------------
Q psy17650 64 QKKHKLVKEEQGPTLEIVQTIQSTTLV---LQKAKDVYLQKCEELDK-LR--------RDN------------------- 112 (396)
Q Consensus 64 kk~hKk~ke~~~~~~ea~k~~q~~~~~---l~KaKk~Y~~~CkE~E~-lr--------ke~------------------- 112 (396)
-+..|+.+|... ..+-.+.+.... +.|....|+.-|...|. ++ ..+
T Consensus 112 ~ri~kkskEi~~---~~~eeLlkV~~EL~t~mKtY~~y~~e~~~ae~Klk~ae~q~ek~~~ks~~~~~~~~~~~~~~r~~ 188 (253)
T cd07683 112 TRMFKKSKEIAF---QLHEDLMKVLNELYTVMKTYHMYHTESISAESKLKEAEKQEEKQIGRSGDPVFHIRLEDRHQRRS 188 (253)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhhH
Confidence 888899887622 333333333333 55666666666655432 11 000
Q ss_pred ---CChhHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 113 ---GSAKDLEK-------AELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 113 ---~s~KeieK-------a~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
..+|.++| ...|+.||+.+|--++..-|..-..|
T Consensus 189 ~~kk~~k~~eKrqaK~~e~klK~tkARNEYLL~L~AaNA~~~~Y 232 (253)
T cd07683 189 SVKKIEKMKEKRQAKYSENKLKSIKARNEYLLTLEATNASVFKY 232 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01223333 33456778888998888887666655
No 31
>cd07682 F-BAR_srGAP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP2 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=98.62 E-value=3.1e-06 Score=82.01 Aligned_cols=98 Identities=17% Similarity=0.207 Sum_probs=79.5
Q ss_pred ChhhHHHHHHHHHHHHHhCC---------------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---------------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQ 64 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---------------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQk 64 (396)
|+||..||+.|.|||++... .=|--.+|..+..+++.+|.-|..|++-+ ..++-.+....++.-
T Consensus 32 AeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~~~Skdh~~LSd~y~~~~~~rl~~~~ed~~ 111 (263)
T cd07682 32 AEIEMDYSRNLEKLAERFLAKTRSTKDQQFKKDQNVLSPVNCWNLLLNQVKRESRDHATLSDIYLNNIIPRFVQISEDSG 111 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 68999999999999985322 22334599999999999999999999999 588899999889888
Q ss_pred hhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 65 KKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQK 101 (396)
Q Consensus 65 k~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~ 101 (396)
+..|+.||.. ...+-.+.+....|+-+.++||..
T Consensus 112 Ri~KksKEi~---~q~~eeLlkV~~ELqt~mktYh~y 145 (263)
T cd07682 112 RLFKKSKEVG---LQLQEDLMKVLNELYTVMKTYHMY 145 (263)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899998862 336666777778888888888743
No 32
>PF00611 FCH: Fes/CIP4, and EFC/F-BAR homology domain; InterPro: IPR001060 The FCH domain is a short conserved region of around 60 amino acids first described as a region of homology between FER and CIP4 proteins []. Many proteins containing an FCH domain are involved in the regulation of cytoskeletal rearrangements, vesicular transport and endocytosis. In the CIP4 protein the FCH domain binds to microtubules []. The FCH domain is always found N-terminally and is followed by a coiled-coil region. Proteins containing an FCH domain can be divided in 3 classes []: A subfamily of protein kinases usually associated with an SH2 domain: Fps/fes (Fujimani poultry sarcoma/feline sarcoma) proto-oncogenes. They are non-receptor protein-tyrosine kinases preferentially expressed in myeloid lineage. The viral oncogene has an unregulated kinase activity which abrogates the need for cytokines and influences differentiation of haematopoietic progenitor cells. Fes related protein (fer). It is an ubiquitously expressed homologue of Fes. Adaptor proteins usually associated with a C-terminal SH3 domain: Schizosaccharomyces pombe CDC15 protein. It mediates cytoskeletal rearrangements required for cytokinesis. It is essential for viability. CD2 cytoplasmic domain binding protein. Mammalian Cdc42-interacting protein 4 (CIP4). It may act as a link between Cdc42 signaling and regulation of the actin cytoskeleton. Mammalian PACSIN proteins. A family of cytoplasmic phosphoproteins playing a role in vesicle formation and transport. A subfamily of Rho-GAP proteins: Mammalian RhoGAP4 proteins. They may down-regulate Rho-like GTPases in hematopoietic cells. Yeast hypothetical protein YBR260C. Caenorhabditis elegans hypothetical protein ZK669.1. ; PDB: 2EFK_A 2EFL_A 2X3W_A 2X3X_C 2X3V_C 3I2W_A 3ABH_B 3Q0K_B 3HAJ_A 3ACO_B ....
Probab=98.60 E-value=3.7e-08 Score=79.49 Aligned_cols=49 Identities=33% Similarity=0.458 Sum_probs=44.6
Q ss_pred ChhhHHHHHHHHHHHHHhCC-------CCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 1 ANIEENNSKLFGKLAKQSGG-------SGTFAPLWQVLKTSIEKIATVQVKMMQKV 49 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~-------~GTl~~sW~~lk~e~Ekla~~H~~La~kL 49 (396)
|.||+.|||+|.||++++.. .|||..+|+.++.+++.+|..|.+++..|
T Consensus 36 a~lE~~Yak~L~kl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~a~~h~~~a~~L 91 (91)
T PF00611_consen 36 ASLEEEYAKSLQKLAKKFKKKMKSSQEYGTLKNAWDSLLEETEQIAEQHSKLAENL 91 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 57999999999999998752 79999999999999999999999999876
No 33
>cd07684 F-BAR_srGAP3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Protein 3. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAP3 contains an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers wit
Probab=98.58 E-value=4.4e-06 Score=80.72 Aligned_cols=104 Identities=14% Similarity=0.183 Sum_probs=75.4
Q ss_pred ChhhHHHHHHHHHHHHHhCC---------------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---------------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQ 64 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---------------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQk 64 (396)
|.||..||+.|.|||++... .=|--.+|..|..+++.+|.-|..|+.-+ .-++-.|..-.|+.-
T Consensus 32 AeIE~EYS~~L~KLA~~f~~K~~~~~~~~s~~d~~~~Sp~~~W~~lL~QT~~iskdh~~LSd~y~~~~~~rl~~~~ed~~ 111 (253)
T cd07684 32 AEIELEYSRSLEKLAERFSSKIRTSREHQFKKDQQLLSPVNCWYLVLEQTRRESRDHATLNDIFNNNVIVRLSQISEDVI 111 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccccccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 68999999999999985421 22335599999999999999999999999 467788888787777
Q ss_pred hhhhhhhhccCchHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy17650 65 KKHKLVKEEQGPTLEIVQTIQST---TLVLQKAKDVYLQKCEELDK 107 (396)
Q Consensus 65 k~hKk~ke~~~~~~ea~k~~q~~---~~~l~KaKk~Y~~~CkE~E~ 107 (396)
+..|+.+|... ..+-.+.+. ...+.|....|+..|...|.
T Consensus 112 Ri~kkskEi~~---~~~eeLlkV~~EL~t~mKTY~~y~~e~~~ae~ 154 (253)
T cd07684 112 RLFKKSKEIGL---QMHEELLKVTNELYTVMKTYHMYHAESISAES 154 (253)
T ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 78888877622 122222222 22356777777777776553
No 34
>KOG4429|consensus
Probab=98.43 E-value=2.6e-06 Score=83.70 Aligned_cols=157 Identities=15% Similarity=0.117 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHhh---
Q psy17650 38 IATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEEL---DKLRR--- 110 (396)
Q Consensus 38 la~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~---E~lrk--- 110 (396)
-|.+|+.|...+ .|+|+++...+.-|-|++|...++|+.... .+..+.....|+|+......+.. +++..
T Consensus 4 hAdiHqkLGkAIe~daIkPl~qiln~QeKk~kaaDNeVEkean---~lidk~deqiKaKkkLmV~aKkheaL~kl~eSae 80 (421)
T KOG4429|consen 4 HADIHQKLGKAIEEDAIKPLRQILNNQEKKIKAADNEVEKEAN---KLIDKKDEQIKAKKKLMVLAKKHEALEKLEESAE 80 (421)
T ss_pred hhHHHHHHhhHhHHHHhhhHHHHHhhHHHHHHhhhhHHHHHHH---HHhhhhhHHHHHHhhhhhhhhhHHHHHHHHHHHH
Confidence 478999999999 589999999999998888887666543333 23345555678888888888844 44432
Q ss_pred ccCChhHHHHHHHHHHh-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC--------C
Q psy17650 111 DNGSAKDLEKAELKVKK-------AQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------N 175 (396)
Q Consensus 111 e~~s~KeieKa~~K~kK-------A~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~ 175 (396)
+..+++|-.|.-.|.+| ..++|.+-....+..|..||.....+.+-.+..|-+||. +.+..++ -
T Consensus 81 qe~aekEkrKfa~klkKskdklekedddY~qknmag~kqRlk~ENtLekc~eSi~elEkeRia-~~cnaL~qYkqhIelf 159 (421)
T KOG4429|consen 81 QEKAEKEKRKFALKLKKSKDKLEKEDDDYVQKNMAGEKQRLKTENTLEKCVESIEELEKERIA-HCCNALGQYKQHIELF 159 (421)
T ss_pred HhhcchHHHHHHHHhhhhHHHHhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 34677776665555544 456788888888999999999999999999999999996 4455554 1
Q ss_pred CcchHhHHHHHHHhhcccccCCc
Q psy17650 176 TNQISASVDELRVTAGNLTLSPL 198 (396)
Q Consensus 176 ~~~~~as~eELr~sIeni~v~~~ 198 (396)
++.+.++++..+..|+.++.+..
T Consensus 160 G~nLrqc~eq~hcaiekad~ekd 182 (421)
T KOG4429|consen 160 GPNLRQCFEQHHCAIEKADDEKD 182 (421)
T ss_pred CchHHHHHHHhhhhHhhhccccc
Confidence 56788999999999999998874
No 35
>smart00055 FCH Fes/CIP4 homology domain. Alignment extended from original report. Highly alpha-helical. Also known as the RAEYL motif or the S. pombe Cdc15 N-terminal domain.
Probab=98.39 E-value=3e-07 Score=74.19 Aligned_cols=45 Identities=29% Similarity=0.506 Sum_probs=40.3
Q ss_pred ChhhHHHHHHHHHHHHHhC----C---CCChHHHHHHHHHHHHHHHHHHHHH
Q psy17650 1 ANIEENNSKLFGKLAKQSG----G---SGTFAPLWQVLKTSIEKIATVQVKM 45 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~----~---~GTl~~sW~~lk~e~Ekla~~H~~L 45 (396)
|.||+.|||.|.||++++. + +|+|..+|+.++.+++.+|..|.++
T Consensus 36 a~iE~eYak~L~kL~~~~~~~~~~~~~~~s~~~aw~~~~~e~~~~a~~h~~~ 87 (87)
T smart00055 36 AKIEEEYAKKLQKLSKKLRAVRDTESEYGSLSKSWEVLLSETDALAKQHLQL 87 (87)
T ss_pred HHHHHHHHHHHHHHHHhhhccCCCCCcchhHHHHHHHHHHHHHHHHHHHhcC
Confidence 5799999999999999532 2 9999999999999999999999864
No 36
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=97.89 E-value=0.0031 Score=55.74 Aligned_cols=120 Identities=20% Similarity=0.294 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHH
Q psy17650 3 IEENNSKLFGKLAKQSGG--SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLE 79 (396)
Q Consensus 3 IEe~YAKsL~KLAKka~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~e 79 (396)
....|++.|.+++....+ .+.+..+|..+..-.+.++..|.++.+.+ ..++.+|..|.+... |.+
T Consensus 29 ~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~---~~~--------- 96 (194)
T cd07307 29 AAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLEQKLENKVIEPLKEYLKKDL---KEI--------- 96 (194)
T ss_pred HHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH---------
Confidence 356788888888887766 22489999999999999999999999999 578899999996332 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 80 IVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 80 a~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
....+...+++..|+..+..++++++....+..+..++.++..|.+.|...-..|
T Consensus 97 -----~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~ 151 (194)
T cd07307 97 -----KKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREEL 151 (194)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223334567777888777777776543344455555556666655555554444
No 37
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=97.27 E-value=0.014 Score=55.64 Aligned_cols=148 Identities=12% Similarity=0.136 Sum_probs=99.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYL 99 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~ 99 (396)
-++|+.+...|-...+++..+|..-+++| ..++.+|..|..-- |.++ .++|.|+.....+.+-+
T Consensus 56 ~~~L~~~L~~lae~~~~i~d~~q~qv~~l~~~v~epLk~Y~~l~----k~~k-------~~~K~~~~ar~~~~~~~---- 120 (211)
T cd07598 56 NPSLKQGLKNFAECLAALQDYRQAEVERLEAKVVQPLALYGTIC----KHAR-------DDLKNTFTARNKELKQL---- 120 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHH----
Confidence 67899999999999999999999999999 58999999998765 3333 34455666555544422
Q ss_pred HHHHHHHHHhhccC-ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC----
Q psy17650 100 QKCEELDKLRRDNG-SAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA---- 174 (396)
Q Consensus 100 ~~CkE~E~lrke~~-s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~---- 174 (396)
..+++++..+. ...+|..++.++.+|..+|......+++--..|| .++.+-|+-.+..++-
T Consensus 121 ---~~leklk~~~~~d~~~i~eaE~~l~~a~~d~~r~s~~l~ee~~rFe-----------~~k~~d~K~~l~~fv~~~m~ 186 (211)
T cd07598 121 ---KQLEKLRQKNPSDRQIISQAESELQKASVDANRSTKELEEQMDNFE-----------KQKIRDIKTIFSDFVLIEML 186 (211)
T ss_pred ---HHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHH
Confidence 34455543232 3446667888999998888888877766655553 3333322222222221
Q ss_pred CCcchHhHHHHHHHhhcccccCC
Q psy17650 175 NTNQISASVDELRVTAGNLTLSP 197 (396)
Q Consensus 175 ~~~~~~as~eELr~sIeni~v~~ 197 (396)
-+.+...++..+-+.|.+||.+.
T Consensus 187 ~~~kale~~~~~~~~~~~~~~~~ 209 (211)
T cd07598 187 FHAKALEVYTAAYQDIQNIDEEE 209 (211)
T ss_pred HHHHHHHHHHHHHHHHhcccccc
Confidence 12355677888999999998764
No 38
>cd07647 F-BAR_PSTPIP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Vetebrates contain two Proline-Serine-Threonine Phosphatase-Interacting Proteins (PSTPIPs), PSTPIP1 and PSTPIP2. PSTPIPs are mainly expressed in hematopoietic cells and are involved in the regulation of cell adhesion and motility. Mutations in PSTPIPs have been shown to cause autoinflammatory disorders. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain, while PSTPIP2 contains only the N-terminal F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=96.41 E-value=0.13 Score=49.54 Aligned_cols=82 Identities=12% Similarity=0.128 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy17650 80 IVQTIQSTTLVLQKAKDVYLQKC-----EELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMST 152 (396)
Q Consensus 80 a~k~~q~~~~~l~KaKk~Y~~~C-----kE~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~ 152 (396)
+.+.....-..+++|+..|.... +++|+++.- .....+++++...|+.+.+.|...-.+| +++...+ +
T Consensus 125 aKk~Y~~~C~e~e~a~~~~~~~~~~~~~ke~eK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~~~~~~~~~~-----~ 199 (239)
T cd07647 125 AKKSYEQKCREKDKAEQAYEKSSSGAQPKEAEKLKKKAAQCKTSAEEADSAYKSSIGCLEDARVEWESEHATAC-----Q 199 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----H
Confidence 33333333444445555554433 456666532 3455677888899999988888888888 4444455 8
Q ss_pred HHHHHhhccccchh
Q psy17650 153 SCKIRNDDRDHKIH 166 (396)
Q Consensus 153 ~cq~Fqd~E~~Ri~ 166 (396)
.||.||.+|..+|+
T Consensus 200 ~~Q~lEe~Ri~~lk 213 (239)
T cd07647 200 VFQNMEEERIKFLR 213 (239)
T ss_pred HHHHHHHHHHHHHH
Confidence 88999999999986
No 39
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=96.37 E-value=0.77 Score=41.88 Aligned_cols=122 Identities=14% Similarity=0.237 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHH
Q psy17650 7 NSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQ 85 (396)
Q Consensus 7 YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q 85 (396)
.|..|..++...++-..+..+...+..-.+.++.++.++...+ ..++.++..|....+.. +
T Consensus 73 l~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~~vi~pl~~~~~~~~~i------------------~ 134 (229)
T PF03114_consen 73 LADALIELGSEFSDDSSLGNALEKFGEAMQEIEEARKELESQIESTVIDPLKEFLKEFKEI------------------K 134 (229)
T ss_dssp HHHHHHHHHHCTSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH------------------H
T ss_pred HHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------------------H
Confidence 3444444444443322356677777777777777777777777 46677777777433211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc-cCC--hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 86 STTLVLQKAKDVYLQKCEELDKLRRD-NGS--AKDLEKAELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 86 ~~~~~l~KaKk~Y~~~CkE~E~lrke-~~s--~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
+..+...+.+--|+..+.+++++++. +.. .+++++++.++....+.|..-++.+...+.++
T Consensus 135 ~~~kkr~~~~ldyd~~~~k~~k~~~~~~~~~~~~~l~~a~~~f~~~~~~l~~~l~~l~~~~~~~ 198 (229)
T PF03114_consen 135 KLIKKREKKRLDYDSARSKLEKLRKKKSKSSKEEKLEEAKEEFEALNEELKEELPKLFAKRQDI 198 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHTTSSBTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23333456666777777777777643 222 45566666666666666666666665555444
No 40
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=96.13 E-value=0.41 Score=45.05 Aligned_cols=78 Identities=18% Similarity=0.138 Sum_probs=44.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYL 99 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~ 99 (396)
.+.+..++..|-.-.++++.+|...+... ..+..+|..|..-.. .+|+....-.+++..|+.....+.|.|..++
T Consensus 77 ~~~l~~~l~~l~~~~~~~~~~~~~~a~~~~~~l~~~L~ey~~~~~----svk~~l~~R~~~~~~~~~a~~~l~kkk~~~~ 152 (236)
T PF09325_consen 77 EKSLSEALSQLAEAFEKISELLEEQANQEEETLGEPLREYLRYIE----SVKEALNRRDKKLIEYQNAEKELQKKKAQLE 152 (236)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44688999999999999999998887765 344445555443221 1111111122344455555555566555554
Q ss_pred HHH
Q psy17650 100 QKC 102 (396)
Q Consensus 100 ~~C 102 (396)
..+
T Consensus 153 kl~ 155 (236)
T PF09325_consen 153 KLK 155 (236)
T ss_pred ccc
Confidence 433
No 41
>cd07657 F-BAR_Fes_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) and Fer (Fes related) tyrosine kinases. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), and Fer (Fes related) are cytoplasmic (or nonreceptor) tyrosine kinases that play roles in haematopoiesis, inflammation and immunity, growth factor signaling, cytoskeletal regulation, cell migration and adhesion, and the regulation of cell-cell interactions. Although Fes and Fer show redundancy in their biological functions, they show differences in their expression patterns. Fer is ubiquitously expressed while Fes is expressed predominantly in myeloid and endothelial cells. Fes and Fer contain an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a posit
Probab=96.10 E-value=0.37 Score=46.64 Aligned_cols=124 Identities=18% Similarity=0.158 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhc---cCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 26 PLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHKLVKEE---QGPTLEIVQTIQSTTLVLQKAKDVYLQK 101 (396)
Q Consensus 26 ~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hKk~ke~---~~~~~ea~k~~q~~~~~l~KaKk~Y~~~ 101 (396)
.-...+..+.+.+-..|.+...+|+ ++.+-+.....--+++++-+++. ...+.++..........++|+|..|..+
T Consensus 94 ~~l~~l~~~~~~~rK~~~~~~~kl~~el~~~~~el~k~Kk~Y~~~~~e~e~Ar~k~e~a~~~~~~~~~~~eKak~k~~~~ 173 (237)
T cd07657 94 DKLTLLIKDKRKAKKAYQEERQQIDEQYKKLTDEVEKLKSEYQKLLEDYKAAKSKFEEAVVKGGRGGRKLDKARDKYQKA 173 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHH
Confidence 3344555566666666666666663 22222222222222223333222 1122222221112234779999999999
Q ss_pred HHHHHHHhhccCChhHHHHHHHHHHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 102 CEELDKLRRDNGSAKDLEKAELKVKKAQED-YKTIVDKYALIKEDFEKRMSTSCK 155 (396)
Q Consensus 102 CkE~E~lrke~~s~KeieKa~~K~kKA~e~-Yk~~v~kye~~r~~wE~~m~~~cq 155 (396)
|.+.+.++++= +- .-..+++.++. |...++.+-+--++.++.|+....
T Consensus 174 ~~k~~~akNeY-----~l-~l~~aN~~q~~yY~~~lP~ll~~lQ~l~E~ri~~~k 222 (237)
T cd07657 174 CRKLHLCHNDY-----VL-ALLEAQEHEEDYRTLLLPGLLNSLQSLQEEFITQWK 222 (237)
T ss_pred HHHHHHHHHHH-----HH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 99988877640 00 00112222333 556677775555666665554443
No 42
>cd07679 F-BAR_PACSIN2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 2 (PACSIN2). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSIN 2 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave su
Probab=95.91 E-value=0.26 Score=48.48 Aligned_cols=112 Identities=17% Similarity=0.221 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHH
Q psy17650 41 VQVKMMQKVNDLVKDVCK-YTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKC-----------EELDKL 108 (396)
Q Consensus 41 ~H~~La~kL~EliK~l~~-f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~C-----------kE~E~l 108 (396)
.|-++...+.|. |++.. |..-||..-|.++.. +++.+ .+-..-|..+.+.... .+++++
T Consensus 103 ~hk~~~~~~Ke~-k~~e~~f~KaQKpw~k~~kkv----~~aKk----~Y~~aCk~e~~A~~~~~~~~~d~~~~~~q~~K~ 173 (258)
T cd07679 103 FHKQMMGGFKET-KEAEDGFRKAQKPWAKKLKEV----EAAKK----AYHTACKEEKLATSREANSKADPALNPEQLKKL 173 (258)
T ss_pred HHHHHHhhhHHH-hHHHHHHHHHhhhHHHHHHHH----HHHHH----HHHHHHHhHHHHHHHHHhcccCCcCCHHHHHHH
Confidence 576766655544 44443 666665554444321 22221 1222222333333332 234444
Q ss_pred hh-ccCChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 109 RR-DNGSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 109 rk-e~~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
+. ......+++|++.+|+++.++...+.+.| ++|...| +.||.||.+|..+|+
T Consensus 174 ~~k~~k~~~~~~k~~~~Y~~~l~~L~~~~~~y~e~m~~~f-----e~~Q~~E~eRi~F~K 228 (258)
T cd07679 174 QDKVEKCKQDVLKTKEKYEKSLKELDQTTPQYMENMEQVF-----EQCQQFEEKRLRFFR 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 32 23578899999999999999999999999 8899999 999999999999985
No 43
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.88 E-value=1.2 Score=40.88 Aligned_cols=145 Identities=19% Similarity=0.218 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHH
Q psy17650 7 NSKLFGKLAKQSGG-SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTI 84 (396)
Q Consensus 7 YAKsL~KLAKka~~-~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~ 84 (396)
||..|..|+..=.. .|+|..+|..+-.-.+.++..+..++... ..+..+|..|..-..-.+.-++ ..
T Consensus 44 lg~~~~~Ls~~e~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~L~~y~~~~~s~k~~l~--------~R--- 112 (218)
T cd07596 44 FGKALIKLAKCEEEVGGELGEALSKLGKAAEELSSLSEAQANQELVKLLEPLKEYLRYCQAVKETLD--------DR--- 112 (218)
T ss_pred HHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HH---
Confidence 44444444442111 23699999999999999999999888877 3566677666643321111111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRRDN-GSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDH 163 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrke~-~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~ 163 (396)
......++.+.+....+-.++++++..+ ..+..+++++.++..+.+.....-..|+.+... |..--..|+..+..
T Consensus 113 ~~~~~~~~~~~~~l~~k~~~~~kl~~~~~~~~~ki~~l~~~i~~~e~~~~~~~~~~~~i~~~----~~~El~~f~~~~~~ 188 (218)
T cd07596 113 ADALLTLQSLKKDLASKKAQLEKLKAAPGIKPAKVEELEEELEEAESALEEARKRYEEISER----LKEELKRFHEERAR 188 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 1112222334444444444556665443 255667777777777766666666666555432 22333345544444
Q ss_pred chh
Q psy17650 164 KIH 166 (396)
Q Consensus 164 Ri~ 166 (396)
-|+
T Consensus 189 dlk 191 (218)
T cd07596 189 DLK 191 (218)
T ss_pred HHH
Confidence 343
No 44
>cd07671 F-BAR_PSTPIP1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 1 (PSTPIP1), also known as CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. F-BAR
Probab=95.82 E-value=0.37 Score=46.84 Aligned_cols=59 Identities=14% Similarity=0.134 Sum_probs=47.2
Q ss_pred HHHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 103 EELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 103 kE~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
+++|+++.- .....+++++...|+++.+.|..+.+.| +++...| +.||.+|.+|..+|+
T Consensus 153 keleK~~~K~~k~~~~~~~a~~~Y~~~v~~l~~~~~~w~~~~~~~~-----~~~Q~lEeeRi~f~K 213 (242)
T cd07671 153 KQSEKSQNKAKQCRDAATEAERVYKQNIEQLDKARTEWETEHILTC-----EVFQLQEDDRITILR 213 (242)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 345555432 3456678899999999999999999999 5666677 899999999999986
No 45
>cd07675 F-BAR_FNBP1L The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 1-Like. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FormiN Binding Protein 1-Like (FNBP1L), also known as Toca-1 (Transducer of Cdc42-dependent actin assembly), forms a complex with neural Wiskott-Aldrich syndrome protein (N-WASP). The FNBP1L/N-WASP complex induces the formation of filopodia and endocytic vesicles. FNBP1L is required for Cdc42-induced actin assembly and is essential for autophagy of intracellular pathogens. It contains an N-terminal F-BAR domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=95.82 E-value=0.33 Score=47.61 Aligned_cols=159 Identities=9% Similarity=0.050 Sum_probs=94.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQ--------VKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQ 92 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H--------~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~ 92 (396)
+.++-..|..+-++.|.+|+-| .+++..|.+..|....+.....+...+. .....++-+..-...+..+
T Consensus 68 ~~~~L~~~~~~a~q~e~~a~~l~~~v~~~l~~~~~~l~~~rk~~~~~~~klqk~l~~~---~~~leksKk~Y~~acke~E 144 (252)
T cd07675 68 FYNILNELNDYAGQREVVAEEMGHRVYGELMRYSHDLKGERKMHLQEGRKAQQYLDMC---WKQMDNSKKKFERECREAE 144 (252)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 3556778999999999999988 5555555544443333322211111111 1111222233333344445
Q ss_pred HHHHHHHHHHH-------HHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhccc
Q psy17650 93 KAKDVYLQKCE-------ELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKY--ALIKEDFEKRMSTSCKIRNDDRD 162 (396)
Q Consensus 93 KaKk~Y~~~Ck-------E~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~ky--e~~r~~wE~~m~~~cq~Fqd~E~ 162 (396)
+|+..|+..=. ++++++.. .....+.+++...|......+...-.+| +.|-..| +.||.|++.|.
T Consensus 145 ~A~~k~~ka~~d~~~tk~~~eK~k~~~~~~~q~~e~aKn~Y~~~L~~~N~~q~k~Y~e~mP~vf-----d~lQ~leE~Ri 219 (252)
T cd07675 145 KAQQSYERLDNDTNATKSDVEKAKQQLNLRTHMADESKNEYAAQLQNFNGEQHKHFYIVIPQIY-----KQLQEMDERRT 219 (252)
T ss_pred HHHHHHHhcccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHH-----HHHHHHHHHHH
Confidence 55555544221 12344332 1244456678888888888888888884 8888888 99999999999
Q ss_pred cchhhhhccCCC----CCcchHhHHHHHH
Q psy17650 163 HKIHVEIKPLSA----NTNQISASVDELR 187 (396)
Q Consensus 163 ~Ri~v~ik~~~~----~~~~~~as~eELr 187 (396)
.+|.-.++.... ..+.+..+++.+.
T Consensus 220 ~~l~e~~~~~~~~E~~v~~~i~~cl~~~~ 248 (252)
T cd07675 220 VKLSECYRGFADSERKVIPIISKCLEGMV 248 (252)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999855555543 3445555555554
No 46
>cd07655 F-BAR_PACSIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce
Probab=95.79 E-value=0.25 Score=48.14 Aligned_cols=60 Identities=20% Similarity=0.335 Sum_probs=45.2
Q ss_pred HHHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhh
Q psy17650 103 EELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 103 kE~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~v 167 (396)
+++++++.. .....++++++..|..+.+.+......| +++...| +.||.||.+|..+|+.
T Consensus 168 ~eleK~~~k~~k~~~~~~~~~~~Y~~~l~~~n~~~~~y~~~m~~~~-----~~~Q~lEe~Ri~~lk~ 229 (258)
T cd07655 168 DQVKKLQDKVEKCKQEVSKTKDKYEKALEDLNKYNPRYMEDMEQVF-----DKCQEFEEKRLDFFKE 229 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 455666432 3466678888889999988888887888 6667777 8899999999888863
No 47
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=95.60 E-value=1.4 Score=41.43 Aligned_cols=54 Identities=9% Similarity=0.173 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHH---hCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Q psy17650 6 NNSKLFGKLAKQ---SGG-SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKY 59 (396)
Q Consensus 6 ~YAKsL~KLAKk---a~~-~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f 59 (396)
.++..|..+++. |+. .+.|..+...+-.-+++.+..|..+++.+. ..+.+|..|
T Consensus 46 el~~~~~efg~~~~~ls~~E~~L~~~L~~~~~~~~~~~~~~~~l~~~~~~~f~e~Lkey 104 (200)
T cd07624 46 EYFDELKEYSPIFQLWSASETELAPLLEGVSSAVERCTAALEVLLSDHEFVFLPPLREY 104 (200)
T ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 355555555553 333 556899999999999999999999988773 455555544
No 48
>cd07658 F-BAR_NOSTRIN The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Nitric Oxide Synthase TRaffic INducer (NOSTRIN). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Nitric Oxide Synthase TRaffic INducer (NOSTRIN) is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). NOSTRIN facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of NOSTRIN may be correlated to preeclampsia. NOSTRIN contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules. The F-BAR domain of NOSTRIN is necessary and sufficient fo
Probab=95.50 E-value=0.54 Score=45.44 Aligned_cols=36 Identities=14% Similarity=-0.060 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 131 DYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 131 ~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
.|..-+.+.+.....|+.+...+|...+..+.+++.
T Consensus 175 Kl~~k~~ka~~~~~k~e~~y~~~~~~l~~~~~~~~~ 210 (239)
T cd07658 175 KLEAKRKKGEESRLKAENEYYTCCVRLERLRLEWES 210 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555555555443
No 49
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=95.32 E-value=2.6 Score=40.23 Aligned_cols=40 Identities=15% Similarity=0.080 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy17650 22 GTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTE 61 (396)
Q Consensus 22 GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~e 61 (396)
++|..++..+-.-.++++.+|...+... ..+...|..|..
T Consensus 66 ~~Ls~al~~la~~~~ki~~~~~~qa~~d~~~l~e~L~eY~r 106 (224)
T cd07623 66 TSLSRALSQLAEVEEKIEQLHGEQADTDFYILAELLKDYIG 106 (224)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555556666555554444 234444444443
No 50
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=95.24 E-value=1.7 Score=41.66 Aligned_cols=91 Identities=15% Similarity=0.154 Sum_probs=62.4
Q ss_pred hHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCchHHH
Q psy17650 4 EENNSKLFGKLAKQSGG--SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHKLVKEEQGPTLEI 80 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hKk~ke~~~~~~ea 80 (396)
+..|+..|-+|+..+.+ --.+..++..|-.-+..++.+|..|.+.++ -++.++..|.+++-+. ++.
T Consensus 39 ~~~F~~aL~~~g~~~~~~~~~~i~~~l~kF~~~l~El~~~~~~L~~~~~~~i~~pL~~f~k~dL~~---~k~-------- 107 (215)
T cd07604 39 ELQFAEALEKLGSKALSREEEDLGAAFLKFSVFTKELAALFKNLMQNLNNIIMFPLDSLLKGDLKG---SKG-------- 107 (215)
T ss_pred HHHHHHHHHHHhccccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHH--------
Confidence 45666666666654432 113677788888889999999999999995 5668999999986422 210
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 81 VQTIQSTTLVLQKAKDVYLQKCEELDKLRR 110 (396)
Q Consensus 81 ~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk 110 (396)
...+...|+.+.|+..|..+++.++
T Consensus 108 -----e~KK~fdK~s~~ye~~~~k~~k~Kk 132 (215)
T cd07604 108 -----DLKKPFDKAWKDYETKASKIEKEKK 132 (215)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 1112245777778888888777655
No 51
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=95.09 E-value=0.63 Score=40.93 Aligned_cols=140 Identities=13% Similarity=0.186 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHHHHH-----HH---HHHHHHHHHHHHHHHHHHhhhhhhhhccCchH
Q psy17650 8 SKLFGKLAKQSGG-SGTFAPLWQVLKTSIEKIATVQVK-----MM---QKVNDLVKDVCKYTEELQKKHKLVKEEQGPTL 78 (396)
Q Consensus 8 AKsL~KLAKka~~-~GTl~~sW~~lk~e~Ekla~~H~~-----La---~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ 78 (396)
-+.|.+.++.+.. ...+......|......++..... +. ..+.+.++.+..+..++. ..+. ..+.
T Consensus 9 ~~kl~k~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~---~~~~---~~v~ 82 (194)
T cd07307 9 LKKLIKDTKKLLDSLKELPAAAEKLSEALQELGKELPDLSNTDLGEALEKFGKIQKELEEFRDQLE---QKLE---NKVI 82 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcccchHHHHHHHHHHHHHHHHHHHHHHH---HHHH---HHHH
Confidence 3455555555433 333344444444445555544432 11 222344455555544442 2221 1233
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 79 EIVQTIQ-STTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTS 153 (396)
Q Consensus 79 ea~k~~q-~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~ 153 (396)
+-++.+. .....+.++++.|+.+..+.|.++..-...+.-.+-..++..+.+.|...-+.|+..+.++..+|...
T Consensus 83 ~pL~~~~~~~~~~~~~~~k~~~~~~~~yd~~~~k~~~~~~~~~~~~~l~~~~~~~~~ar~~y~~~~~~~~~~l~~~ 158 (194)
T cd07307 83 EPLKEYLKKDLKEIKKRRKKLDKARLDYDAAREKLKKLRKKKKDSSKLAEAEEELQEAKEKYEELREELIEDLNKL 158 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444 56677888999999999998888642100000000234556667777777777777777766655543
No 52
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=95.07 E-value=2.8 Score=40.65 Aligned_cols=39 Identities=13% Similarity=0.032 Sum_probs=20.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy17650 22 GTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYT 60 (396)
Q Consensus 22 GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~ 60 (396)
++|..++..|-.-.+++..+|...+... -.+...|..|.
T Consensus 76 ~~ls~~l~~laev~~ki~~~~~~qa~~d~~~l~e~L~eYi 115 (234)
T cd07664 76 TALSRALSQLAEVEEKIDQLHQDQAFADFYLFSELLGDYI 115 (234)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHH
Confidence 4455666666555566666665555444 23334444443
No 53
>cd07613 BAR_Endophilin_A1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. Endophilin-A1 (or endophilin-1) is also referred to as SH3P4 (SH3 domain containing protein 4) or SH3GL2 (SH3 domain containing Grb2-like protein 2). It is localized in presynaptic nerve terminals. It plays many roles i
Probab=94.97 E-value=2.6 Score=40.66 Aligned_cols=56 Identities=11% Similarity=0.262 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 8 SKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 8 AKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
|..|++-....+.-.-|..+...+-...+++|....++...+ ...+.++..|.+..
T Consensus 70 g~~M~~~G~elg~dS~~G~aL~~~G~A~~kla~~~~~~~~~i~~~fl~PL~~~~~~d 126 (223)
T cd07613 70 AEAMLKFGRELGDECNFGPALGDVGEAMRELSEVKDSLDMEVKQNFIDPLQNLHDKD 126 (223)
T ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333333466788888888889999999988888 57888888886544
No 54
>cd07640 BAR_ASAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP3 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 3) is also known as ACAP4 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 4), DDEFL1 (Development and Differentiation Enhancing Factor-Like 1), or centaurin beta-6. It is an Arf6-specific GTPase activating protein (GAP) and is co-localized with Arf6 in ruffling membranes upon EGF stimulation. ASAP3 is implicated in the pathogenesis of hepatocellular carcinoma and plays a role in regulating cell migration and invasion. ASAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membran
Probab=94.84 E-value=1.9 Score=41.06 Aligned_cols=93 Identities=16% Similarity=0.189 Sum_probs=72.6
Q ss_pred hhHHHHHHHHHHHHHhCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhccCchHH
Q psy17650 3 IEENNSKLFGKLAKQSGG--SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLV-KDVCKYTEELQKKHKLVKEEQGPTLE 79 (396)
Q Consensus 3 IEe~YAKsL~KLAKka~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL~Eli-K~l~~f~eeQkk~hKk~ke~~~~~~e 79 (396)
=|+.|+..|-+|-..+.. --.+..+|-.|-+=+-.++.+--.|.+.|+.++ -|+..|.++.-+. +|.
T Consensus 38 ne~~~~~~le~lg~~~l~~~~~~~~t~fl~~av~tkel~al~k~L~qn~nniv~fpldsflK~dlr~---~K~------- 107 (213)
T cd07640 38 NEEQYTEALENLGNSHLSQNNHELSTGFLNLAVFTREVTALFKNLVQNLNNIVSFPLDSLLKGQLRD---GRL------- 107 (213)
T ss_pred HHHHHHHHHHHHhhhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccchHHHHHHHhhh---hhH-------
Confidence 388999999999887655 566778899999999999999999999998777 5999998887533 321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17650 80 IVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD 111 (396)
Q Consensus 80 a~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke 111 (396)
...+...|+.+-|+.++-..++..+.
T Consensus 108 ------D~KK~FeK~skDyE~kl~K~ak~~r~ 133 (213)
T cd07640 108 ------ESKKQMEKAWKDYEAKIGKLEKERRE 133 (213)
T ss_pred ------HHHhHHHHHHHHHHHHHHHHhccccc
Confidence 11222568899999999998887653
No 55
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=94.84 E-value=2.6 Score=40.37 Aligned_cols=57 Identities=11% Similarity=0.186 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy17650 8 SKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQ 64 (396)
Q Consensus 8 AKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQk 64 (396)
|+.|..-+...+.-..|..+...+-...+++|.++.++...+ ...+.+|..+.++.+
T Consensus 57 g~~M~~~g~~lg~dS~~G~aL~~~G~a~~kia~~q~~f~~~~~~~~l~pL~~~l~~~k 114 (215)
T cd07593 57 GLVMINHGEEFPQDSEYGSCLSKLGRAHCKIGTLQEEFADRLSDTFLANIERSLAEMK 114 (215)
T ss_pred HHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444433333477888888888899999998888888 477788888876543
No 56
>cd07641 BAR_ASAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP1 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 1) is also known as DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. ASAP1 is an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6 However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Ar
Probab=94.84 E-value=3.7 Score=39.44 Aligned_cols=93 Identities=18% Similarity=0.184 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHHHHHh--CCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhccCchHH
Q psy17650 3 IEENNSKLFGKLAKQS--GGSGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLV-KDVCKYTEELQKKHKLVKEEQGPTLE 79 (396)
Q Consensus 3 IEe~YAKsL~KLAKka--~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~Eli-K~l~~f~eeQkk~hKk~ke~~~~~~e 79 (396)
-++.|...|-+|.... .+--.+..++..|-+-+-.++.+|..|.+.++-+| .++..|.++-- |.+|-
T Consensus 38 n~~~f~~~l~~Lg~~~~~~dd~~i~~a~~kfs~~~~El~~~~k~L~~~~~~~v~~~L~~flK~Dl---r~~K~------- 107 (215)
T cd07641 38 NEENYAQALDKFGSNFLSRDNPDLGTAFVKFSTLTKELSTLLKNLLQGLSHNVIFTLDSLLKGDL---KGVKG------- 107 (215)
T ss_pred HHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhhhH-------
Confidence 4678888999998887 33445668899999999999999999999997555 69999987754 33331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17650 80 IVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD 111 (396)
Q Consensus 80 a~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke 111 (396)
...+...|+-+-|+.++-.+++.+++
T Consensus 108 ------d~KK~FdK~~kDye~k~~K~ek~~r~ 133 (215)
T cd07641 108 ------DLKKPFDKAWKDYETKFTKIEKEKRE 133 (215)
T ss_pred ------HHHhHHHHHHHHHHHHHHHHHhhhhh
Confidence 11122568888899999888877653
No 57
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=94.51 E-value=2.9 Score=40.56 Aligned_cols=69 Identities=19% Similarity=0.158 Sum_probs=38.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQK 93 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~K 93 (396)
-++|..++..|-.-.++++.+|...+++. -.+..+|..|..-- -.+|...+.-.++.+.|+.....+.|
T Consensus 75 ~~~Ls~als~laev~~~i~~~~~~qa~qd~~~f~e~l~eYiRli----~SVK~~f~~R~k~~~~~~~~~~~l~k 144 (234)
T cd07665 75 NTALSRALSQLAEVEEKIEQLHQEQANNDFFLLAELLADYIRLL----SAVRGAFDQRMKTWQRWQDAQAMLQK 144 (234)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577777777777777777777777666 35555666665332 11222222233444555555554444
No 58
>cd07651 F-BAR_PombeCdc15_like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe Cdc15, and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Schizosaccharomyces pombe Cdc15 and Imp2, and similar proteins. These proteins contain an N-terminal F-BAR domain and a C-terminal SH3 domain. S. pombe Cdc15 and Imp2 play both distinct and overlapping roles in the maintenance and strengthening of the contractile ring at the division site, which is required in cell division. Cdc15 is a component of the actomyosin ring and is required in normal cytokinesis. Imp2 colocalizes with the medial ring during septation and is required for normal septation. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation
Probab=94.47 E-value=1.8 Score=41.39 Aligned_cols=60 Identities=12% Similarity=0.185 Sum_probs=44.2
Q ss_pred HHHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhh
Q psy17650 103 EELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 103 kE~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~v 167 (396)
+++++++.. .....++.+++..|+.+.+.|....+.| +++...+ +.||.||..|..+|+.
T Consensus 150 ke~eK~~~k~~k~~~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~-----~~~Q~lEe~Ri~~lk~ 211 (236)
T cd07651 150 KELEKNNAKLNKAQSSINSSRRDYQNAVKALRELNEIWNREWKAAL-----DDFQDLEEERIQFLKS 211 (236)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Confidence 455555432 3456677888899999999999998887 4444444 8999999999999873
No 59
>cd07676 F-BAR_FBP17 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Formin Binding Protein 17. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Formin Binding Protein 17 (FBP17), also called FormiN Binding Protein 1 (FNBP1), is involved in dynamin-mediated endocytosis. It is recruited to clathrin-coated pits late in the endocytosis process and may play a role in the invagination and scission steps. FBP17 binds in vivo to tankyrase, a protein involved in telomere maintenance and mitogen activated protein kinase (MAPK) signaling. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=94.31 E-value=1.8 Score=42.42 Aligned_cols=153 Identities=8% Similarity=0.111 Sum_probs=90.9
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchH----HHHHHHHHHHHHHHHHHHHHHHHH----
Q psy17650 32 KTSIEKIAT-VQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTL----EIVQTIQSTTLVLQKAKDVYLQKC---- 102 (396)
Q Consensus 32 k~e~Ekla~-~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~----ea~k~~q~~~~~l~KaKk~Y~~~C---- 102 (396)
-.+-+.+++ +..+++..|..++..+..|+........+.....+... ++-+..-...+..+.|+..|+..=
T Consensus 80 A~~H~~~~~~L~~~v~~~l~~~~~~~k~~rK~~~~~~~k~qk~~~~~~~~lekaKk~Y~~acke~E~A~~~~~ka~~d~~ 159 (253)
T cd07676 80 AGQHEVISENLASQIIVELTRYVQELKQERKSHFHDGRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADIN 159 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 356666766 66677777777777777777766544333321111111 122222223334444544443221
Q ss_pred ---HHHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC--
Q psy17650 103 ---EELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKY--ALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA-- 174 (396)
Q Consensus 103 ---kE~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~ky--e~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~-- 174 (396)
.++++++.. .....+.+++...|....+.+...-.+| +.|-..| +.||.|++.|..++.-.++.+..
T Consensus 160 ~sk~~~eK~k~~~~~~~~~~e~aKn~Y~~~l~~~N~~q~~~Y~e~mp~vf-----d~lQ~lee~Ri~~l~e~l~~~~~~e 234 (253)
T cd07676 160 VTKADVEKARQQAQIRHQMAEDSKAEYSSYLQKFNKEQHEHYYTHIPNIF-----QKIQEMEERRIGRVGESMKTYAEVD 234 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 123344432 2344566678888888888887777444 7788888 99999999999999866676664
Q ss_pred --CCcchHhHHHHHHHh
Q psy17650 175 --NTNQISASVDELRVT 189 (396)
Q Consensus 175 --~~~~~~as~eELr~s 189 (396)
..+.+..+++.+...
T Consensus 235 ~~~~~~i~~cl~~i~~~ 251 (253)
T cd07676 235 RQVIPIIGKCLDGITKA 251 (253)
T ss_pred HHHhHHHHHHHHHHHHh
Confidence 345666666666544
No 60
>cd07660 BAR_Arfaptin The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also bind to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Mammals contain at least two isoforms of Arfaptin. Arfaptin 1 has been shown to inhibit the activation of Arf-dependent phospholipase D (PLD) and the secretion of matrix metalloproteinase-9 (MMP-9), an enzyme implicated in cancer invasiveness and metastasis. Arfaptin 2 regulates the aggregation of the protein huntingtin, which is im
Probab=94.11 E-value=1 Score=42.89 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy17650 90 VLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 90 ~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v 167 (396)
..+.||=-|.+.|.+.|.+..++-+.+.+.|.+ .++..++..-++|+..|.| .|++.+-+++.|+++
T Consensus 105 ~ye~aR~EYdayr~D~ee~~~~~~~~~~l~r~~----~~q~~~~~~k~kf~KLR~D-------V~~Kl~lLeenrv~v 171 (201)
T cd07660 105 QYESARIEYDAYRNDLEALNLGPRDAATSARLE----EAQRRFQAHKDKYEKLRND-------VSVKLKFLEENKVKV 171 (201)
T ss_pred HHHhhhHhHHHHhccHHHcccCCCccchHhhHH----HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhHHHH
Confidence 345689999999999999877655555555543 3555666666777777765 577777777777654
No 61
>cd07595 BAR_RhoGAP_Rich-like The Bin/Amphiphysin/Rvs (BAR) domain of Rich-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to GAP interacting with CIP4 homologs proteins (Rich). Members contain an N-terminal BAR domain, followed by a Rho GAP domain, and a C-terminal prolin-rich region. Vertebrates harbor at least three Rho GAPs in this subfamily including Rich1, Rich2, and SH3-domain binding protein 1 (SH3BP1). Rich1 and Rich2 play complementary roles in the establishment and maintenance of cell polarity. Rich1 is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. Rich2 is a Rac GAP that interacts with CD317 and plays a role in actin cytoskeleton organization and
Probab=94.11 E-value=2.7 Score=41.02 Aligned_cols=138 Identities=13% Similarity=0.074 Sum_probs=78.3
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQ 82 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k 82 (396)
|...|+.|.+-++..+.-..|..+...+-.-.+++|.++.++-..+ +..++++..+.+..- +
T Consensus 59 ~~~Lg~~M~~~g~~l~~~s~lg~~L~~~g~a~~~ia~~~~~~d~~i~~~fl~pL~~~le~di-----------------k 121 (244)
T cd07595 59 EYGLAQSMLESSKELPDDSLLGKVLKLCGEAQNTLARELVDHEMNVEEDVLSPLQNILEVEI-----------------P 121 (244)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------H
Confidence 4456666666666665445567888888888899999999988888 578888888876331 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17650 83 TIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRD 162 (396)
Q Consensus 83 ~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~ 162 (396)
.+++..+.|++.+=-|...-..+.++.+... ..-...|.....+++...-++|+..+.++...|.. |-+.|.
T Consensus 122 ~i~k~RKkLe~~RLd~D~~k~r~~ka~k~~~----~~~~~~K~~~l~eE~e~ae~k~e~~~e~~~~~M~~----~l~~E~ 193 (244)
T cd07595 122 NIQKQKKRLSKLVLDMDSARSRYNAAHKSSG----GQGAAAKVDALKDEYEEAELKLEQCRDALATDMYE----FLAKEA 193 (244)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHhcccccc----ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHccH
Confidence 1122222222222223222222222221100 00012233445667777777777788888777774 444455
Q ss_pred cchh
Q psy17650 163 HKIH 166 (396)
Q Consensus 163 ~Ri~ 166 (396)
+.+.
T Consensus 194 e~~~ 197 (244)
T cd07595 194 EIAS 197 (244)
T ss_pred HHHH
Confidence 5553
No 62
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=93.93 E-value=2.7 Score=40.51 Aligned_cols=67 Identities=25% Similarity=0.292 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHHHHh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy17650 95 KDVYLQKCEELDKLRRDNGSAKDLEKAELKVKK-----AQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 95 Kk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kK-----A~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v 167 (396)
++-|..+|.++++... |+.|++.|.++ -.+...++++.++.-..+.++-..+.|+.---+|.+|+-+
T Consensus 118 ~~E~K~~~~~l~K~~s------el~Kl~KKs~~~~~~k~~~~l~~~~e~v~~k~~ele~~~~~~lr~al~EERrRyc~ 189 (223)
T cd07605 118 KKEYKQKREDLDKARS------ELKKLQKKSQKSGTGKYQEKLDQALEELNDKQKELEAFVSQGLRDALLEERRRYCF 189 (223)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666543 46677777664 4455677788888888888888888888777777777754
No 63
>PF06456 Arfaptin: Arfaptin-like domain; InterPro: IPR010504 Arfaptin interacts with ARF1, a small GTPase involved in vesicle budding at the Golgi complex and immature secretory granules. The structure of arfaptin shows that upon binding to a small GTPase, arfaptin forms a an elongated, crescent-shaped dimer of three-helix coiled-coils []. The N-terminal region of ICA69 is similar to arfaptin [].; PDB: 1I4D_B 1I4L_B 1I49_B 1I4T_A 4DCN_D.
Probab=93.81 E-value=2.7 Score=40.63 Aligned_cols=117 Identities=15% Similarity=0.167 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 31 LKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR 110 (396)
Q Consensus 31 lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk 110 (396)
+..+....|+.|..+++.-..+++.+.-|..+..-..-+. +.+. .......+.+|=-|.+.|.+++.+..
T Consensus 89 l~~~f~~~~~~~~~~~~~~~~L~~~l~~~~~~l~Tf~~ka------I~DT----~~Tik~ye~aR~EY~ay~~~lke~~~ 158 (229)
T PF06456_consen 89 LGEEFSANGEAQRSLAKQGETLLKALKRFLSDLNTFRNKA------IPDT----LLTIKKYEDARFEYDAYRLWLKEMSD 158 (229)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH------HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3446667778888777777777777777777664432222 1111 23334457899999999999999974
Q ss_pred ccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 111 DNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 111 e~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
+-. -+..+...++++++..|+.+-++|+..|.|= |++.+-+++.|.+
T Consensus 159 e~~--~~~~~~~~~~r~~q~~~~~~k~rf~kLr~Dv-------~~Kl~LL~~~rv~ 205 (229)
T PF06456_consen 159 ELD--PDTAKQEPKFRVAQGNYQEAKERFDKLRSDV-------LVKLDLLDENRVN 205 (229)
T ss_dssp -TS--TSSTTCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred ccC--chhhcccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHH
Confidence 311 1111235567788888888888888888765 4555555555554
No 64
>cd07648 F-BAR_FCHO The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proteins in this group have been named FCH domain Only (FCHO) proteins. Vertebrates have two members, FCHO1 and FCHO2. These proteins contain an F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.68 E-value=1.5 Score=42.55 Aligned_cols=44 Identities=16% Similarity=0.260 Sum_probs=30.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 118 LEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 118 ieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
++|+...|+.+.+.|...-..| ..+...| +.||.||.+|..+|+
T Consensus 159 ~~ka~~~Y~~~v~~~~~~~~~~~~~m~~~~-----~~~Q~lEe~Ri~~~k 203 (261)
T cd07648 159 LKKAQDEYKALVEKYNNIRADFETKMTDSC-----KRFQEIEESHLRQMK 203 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 4666677777777777776667 4455555 778888888877774
No 65
>cd07645 I-BAR_IMD_BAIAP2L1 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. BAIAP2L1 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 1) is also known as IRTKS (Insulin Receptor Tyrosine Kinase Substrate). It is widely expressed, serves as a substrate for the insulin receptor, and binds the small GTPase Rac. It plays a role in regulating the actin cytoskeleton and colocalizes with F-actin, cortactin, VASP, and vinculin. BAIAP2L1 expression leads to the formation of short actin bundles, distinct from filopodia-like protrusions induced by the expression of the related protein IRSp53. It contains an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The IMD domain of
Probab=93.62 E-value=7.1 Score=37.69 Aligned_cols=149 Identities=17% Similarity=0.203 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhccCchHHHHHH
Q psy17650 5 ENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCK-YTEELQKKHKLVKEEQGPTLEIVQT 83 (396)
Q Consensus 5 e~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~-f~eeQkk~hKk~ke~~~~~~ea~k~ 83 (396)
+.|--.|.|++-.+...|+=+..=+++.. +++.|.++-..|.+..|.+.. +.-.. -++++-. .+-+..
T Consensus 44 ~~y~dal~Kige~A~~s~~SkeLG~~L~q----i~ev~r~i~~~le~~lK~Fh~Ell~~L---E~k~elD----~kyi~a 112 (226)
T cd07645 44 KAYYDGVAKIGEIAAVSPVSKELGHVLME----ISDVHKKLNDSLEENFKKFHREIIAEL---ERKTDLD----VKYMTA 112 (226)
T ss_pred HHHHHHHHHHHHHHhcCCCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHH
Confidence 45666667776666554444444455554 666776666666555443321 11111 1222111 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17650 84 IQSTTLVLQKAKDVYLQKCE-ELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRD 162 (396)
Q Consensus 84 ~q~~~~~l~KaKk~Y~~~Ck-E~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~ 162 (396)
-+++++.-.|.|-.-..+|. |+.++|+-+-..|...|-+.|-- +|++.++.-+.+-+.=..+.|+.--.+|.
T Consensus 113 ~~Kkyq~E~k~k~dsLeK~~seLKK~RRKsqg~kn~~kye~Ke~-------~~~e~~~~~q~el~~f~~~~~k~AL~EEr 185 (226)
T cd07645 113 TLKRYQTEHKNKLDSLEKSQADLKKIRRKSQGRRNASKYEHKEN-------EYLETVTSRQSDIQKFIADGCREALLEEK 185 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCchhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23445555555544444443 44555543323333333333322 45555666666666666678888878888
Q ss_pred cchhhhhcc
Q psy17650 163 HKIHVEIKP 171 (396)
Q Consensus 163 ~Ri~v~ik~ 171 (396)
+|+-+.+..
T Consensus 186 RRycFlvdk 194 (226)
T cd07645 186 RRFCFLVDK 194 (226)
T ss_pred HHHHHHHHH
Confidence 888654333
No 66
>cd07653 F-BAR_CIP4-like The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Cdc42-Interacting Protein 4 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. Members of this subfamily typically contain an N-terminal F-BAR domain and a C-terminal SH3 domain. In addition, some members such as FNBP1L contain a central Cdc42-binding HR1 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged l
Probab=93.57 E-value=1.7 Score=41.69 Aligned_cols=20 Identities=10% Similarity=0.092 Sum_probs=9.6
Q ss_pred HHHHHHHHHhHHHHHHHHHH
Q psy17650 118 LEKAELKVKKAQEDYKTIVD 137 (396)
Q Consensus 118 ieKa~~K~kKA~e~Yk~~v~ 137 (396)
.++++..|..+.+.+..+..
T Consensus 177 ~~~a~~~Y~~~l~~~N~~~~ 196 (251)
T cd07653 177 AEEAKNEYAAQLQKFNKEQR 196 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555554444433
No 67
>cd07659 BAR_PICK1 The Bin/Amphiphysin/Rvs (BAR) domain of Protein Interacting with C Kinase 1. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization and lipid binding module that can detect and drive membrane curvature. Protein Interacting with C Kinase 1 (PICK1), also called Protein kinase C-alpha-binding protein, is highly expressed in brain and testes. PICK1 plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. PICK1 is also critical in the early stages of spermiogenesis. Mice deficient in PICK1 are infertile and show characteristics of the human disease globozoospermia such as round-headed sperm, reduced sperm count, and severely impaired sperm motility. PICK1 may also be involved in the neuropathogenesis of schizophrenia. PICK1 contains an N-terminal PDZ domain and a C-terminal BAR domain. BAR domains form dimers th
Probab=93.55 E-value=2.3 Score=40.67 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=52.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy17650 92 QKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDY-------KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHK 164 (396)
Q Consensus 92 ~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Y-------k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~R 164 (396)
..||=.|.+.|.+++.+..+..+.-.++..-.+++.+.-+| +.+-++|+.+|.|- .-+.+-+|+.+
T Consensus 109 ~~ar~EY~ayc~kvkEmd~ee~~~~~~~e~l~rvetgnyeyrl~lRcrq~~r~kf~kLR~DV-------~vKlelLe~k~ 181 (215)
T cd07659 109 ADVKFEYLSYCLKVKEMDDEEYSYAALDEPLYRVETGNYEYRLILRCRQEARARFAKLRQDV-------LEKLELLDQKH 181 (215)
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccCcHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhh
Confidence 45899999999999999654322222222334444455555 55556666666555 34445555555
Q ss_pred hhhhhccCCCCCcchHhHHHHHHHhhccccc
Q psy17650 165 IHVEIKPLSANTNQISASVDELRVTAGNLTL 195 (396)
Q Consensus 165 i~v~ik~~~~~~~~~~as~eELr~sIeni~v 195 (396)
+++.-+.++--++.+.+-+.+.+..+...++
T Consensus 182 vk~i~~QL~~f~~aisay~~~~~~~~~~~~~ 212 (215)
T cd07659 182 VQDIVFQLQRFVSALSEYHSDCHELLKEPDL 212 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 5433333332233455555555555554444
No 68
>cd07672 F-BAR_PSTPIP2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 2. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Proline-Serine-Threonine Phosphatase-Interacting Protein 2 (PSTPIP2), also known as Macrophage Actin-associated tYrosine Phosphorylated protein (MAYP), is mostly expressed in hematopoietic cells but is also expressed in the brain. It is involved in regulating cell adhesion and motility. Mutations in the gene encoding murine PSTPIP2 can cause autoinflammatory disorders such as chronic multifocal osteomyelitis and macrophage autoinflammatory disease. PSTPIP2 contains an N-terminal F-BAR domain and lacks the PEST motifs and SH3 domain that are found in PSTPIP1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They ca
Probab=93.53 E-value=3.3 Score=40.23 Aligned_cols=60 Identities=12% Similarity=0.051 Sum_probs=46.1
Q ss_pred HHHHHHhh-ccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 103 EELDKLRR-DNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 103 kE~E~lrk-e~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
+++++++. -..+..+++|+...|+++.+.|..+.+.|+.-.. .+-+.+|.+|.+|..+|+
T Consensus 154 ke~~K~~~Kl~K~~~~~~k~~~~Y~~~v~~l~~~~~~w~~~~~----~~c~~fq~lEeeRi~f~k 214 (240)
T cd07672 154 KQQEKLFAKLAQSKQNAEDADRLYMQNISVLDKIREDWQKEHV----KACEFFEKQECERINFFR 214 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 45555532 2347778899999999999999999999965433 556888899999999986
No 69
>PF08397 IMD: IRSp53/MIM homology domain; InterPro: IPR013606 The IMD (IRSp53 and MIM (missing in metastases) homology) domain is a BAR-like domain of approximately 250 amino acids found at the N-terminal in the insulin receptor tyrosine kinase substrate p53 (IRSp53) and in the evolutionarily related IRSp53/MIM family. In IRSp53, a ubiquitous regulator o the actin cytoskeleton, the IMD domain acts as conserved F-actin bundling domain involved in filopodium formation. Filopodium-inducing IMD activity is regulated by Cdc42 and Rac1 (Rho-family GTPases) and is SH3-independent [, , ]. The IRSp53/MIM family is a novel F-actin bundling protein family that includes invertebrate relatives: Vertebrate MIM (missing in metastasis), an actin-binding scaffold protein that may be involved in cancer metastasis. Vertebrate ABBA-1, a MIM-related protein. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2 (BAI1-associated protein 2) or insulin receptor tyrosine kinase substrate p53 (IRSp53), a multifunctional adaptor protein that links Rac1 with a Wiskott-Aldrich syndrome family verprolin-homologous protein 2 (WAVE2) to induce lamellipodia or Cdc42 with Mena to induce filopodia []. Vertebrate brain-specific angiogenesis inhibitor 1-associated protein 2-like proteins 1 and 2 (BAI1-associated protein 2-like proteins 1 and 2). Drosophila melanogaster (Fruit fly) CG32082-PA. Caenorhabditis elegans M04F3.5 protein. The vertebrate IRSp53/MIM family is divided into two major groups: the IRSp53 subfamily and the MIM/ABBA subfamily. The putative invertebrate homologues are positioned between them. The IRSp53 subfamily members contain an SH3 domain, and the MIM/ABBA subfamily proteins contain a WH2 (WASP-homology 2) domain. The vertebrate SH3-containing subfamily is further divided into three groups according to the presence or absence of the WWB and the half-CRIB motif. The IMD domain can bind to and bundle actin filaments, bind to membranes and interact with the small GTPase Rac [, ]. The IMD domain folds as a coiled coil of three extended alpha-helices and a shorter C-terminal helix. Helix 4 packs tightly against the other three helices, and thus represents an integral part of the domain. The fold of the IMD domain closely resembles that of the BAR (Bin-Amphiphysin-RVS) domain, a functional module serving both as a sensor and inducer of membrane curvature []. The WH2 domain performs a scaffolding function [].; GO: 0008093 cytoskeletal adaptor activity, 0017124 SH3 domain binding, 0007165 signal transduction, 0046847 filopodium assembly; PDB: 2D1L_A 3OK8_B 1WDZ_B 1Y2O_A 2YKT_A.
Probab=93.45 E-value=4.7 Score=38.28 Aligned_cols=36 Identities=8% Similarity=0.032 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy17650 132 YKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 132 Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v 167 (396)
.+..+..++.-..+++.-..+.|+..-.+|.+|+-+
T Consensus 143 ~~~~~~~v~~~~~ele~~~~~~~r~al~EERrRyc~ 178 (219)
T PF08397_consen 143 LKEALQDVTERQSELEEFEKQSLREALLEERRRYCF 178 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777788877778888888888888754
No 70
>cd07649 F-BAR_GAS7 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Growth Arrest Specific protein 7. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Growth Arrest Specific protein 7 (GAS7) is mainly expressed in the brain and is required for neurite outgrowth. It may also play a role in the protection and migration of embryonic stem cells. Treatment-related acute myeloid leukemia (AML) has been reported resulting from mixed-lineage leukemia (MLL)-GAS7 translocations as a complication of primary cancer treatment. GAS7 contains an N-terminal SH3 domain, followed by a WW domain, and a central F-BAR domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=93.23 E-value=1.9 Score=41.72 Aligned_cols=53 Identities=9% Similarity=0.065 Sum_probs=45.1
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhhhhccCC
Q psy17650 116 KDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLS 173 (396)
Q Consensus 116 KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~ 173 (396)
...+|+...++++.+.|...-..| ++|...| +.||.||..|+.+|+-.|..+.
T Consensus 161 ~K~~Ka~~e~~~~ve~y~~~r~~we~~m~~~~-----~~~Q~~Ee~Rl~~lk~~L~~y~ 214 (233)
T cd07649 161 RKSTQAGDDLMRCVDLYNQAQSKWFEEMVTTS-----LELERLEVERIEMIRQHLCQYT 214 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888899999999998999 7888888 9999999999999986666665
No 71
>cd07615 BAR_Endophilin_A3 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins localized at synapses that interacts with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated e
Probab=93.06 E-value=9 Score=37.04 Aligned_cols=58 Identities=12% Similarity=0.158 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 6 NNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 6 ~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
.-+..|++-....+.-..|..+...+-..-+++|.+..++...+ ...+.++..|.+..
T Consensus 68 ~Lg~~M~~~G~~lg~dS~~G~aL~~~G~A~~kla~~~~~~~~~v~~~fl~pL~~~l~~d 126 (223)
T cd07615 68 LLGDCMLRYGRELGEESTFGNALLDVGESMKQMAEVKDSLDINVKQNFIDPLQLLQDKD 126 (223)
T ss_pred HHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444554444444444467788888888889999999998888 57888888886543
No 72
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=92.94 E-value=9.3 Score=36.87 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=94.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYL 99 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~ 99 (396)
.+.++.....|-....++...|.-.+++| ..+|.+|..|...-|..|-.+| .+. ++++.=-
T Consensus 63 ~~~l~~~L~~fae~la~vqDYRqa~v~RlE~KVv~pL~~Y~~~cK~~r~elK----~~~--------------~ar~kEi 124 (219)
T PF06730_consen 63 NPNLKLGLKNFAECLAKVQDYRQAEVERLEAKVVEPLSQYGTICKHARDELK----KFN--------------KARNKEI 124 (219)
T ss_pred CccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH----HHH--------------HHHHHHH
Confidence 78899999999999999999999999999 5899999999966543322222 222 2333333
Q ss_pred HHHHHHHHHhhcc-CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCCCcc
Q psy17650 100 QKCEELDKLRRDN-GSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSANTNQ 178 (396)
Q Consensus 100 ~~CkE~E~lrke~-~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~~~~~ 178 (396)
..-+.+|+++.-+ .....|.+++..+.+|.-+-......+++.-..||+.....-+..= .+++.+++.= |.+
T Consensus 125 kq~~~Leklr~k~psdr~~isqae~el~kas~~~~rt~~~Lee~i~~FEkqKl~DlK~i~---sdFv~iEM~f----HaK 197 (219)
T PF06730_consen 125 KQLKQLEKLRQKNPSDRQIISQAESELQKASVDATRTTKQLEETIDNFEKQKLKDLKKIF---SDFVTIEMVF----HAK 197 (219)
T ss_pred HHHHHHHHHHccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH----HHH
Confidence 3444556776433 2333467777888888777777777777777777655443332210 1222221111 123
Q ss_pred hHhHHHHHHHhhcccccCC
Q psy17650 179 ISASVDELRVTAGNLTLSP 197 (396)
Q Consensus 179 ~~as~eELr~sIeni~v~~ 197 (396)
--++|..=-+.|+++|.+.
T Consensus 198 ALEv~T~a~q~i~~id~e~ 216 (219)
T PF06730_consen 198 ALEVYTAAYQDIQNIDEEE 216 (219)
T ss_pred HHHHHHHHHHHHhcCChhh
Confidence 3355666666788887764
No 73
>cd07680 F-BAR_PACSIN1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 1 or Syndapin I is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropatholog
Probab=92.91 E-value=3 Score=41.02 Aligned_cols=58 Identities=19% Similarity=0.337 Sum_probs=47.4
Q ss_pred HHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 104 ELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 104 E~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
++++++.. .....+++++...|+++.+.+......| +++...| +.||.||..|..+|+
T Consensus 169 q~eK~~~k~~k~~~~~~~sk~~Y~~~l~~ln~~~~~y~~~m~~vf-----d~~Q~~Ee~Ri~flk 228 (258)
T cd07680 169 QQKKLQDKVDKCKQDVQKTQEKYEKVLDDVGKTTPQYMENMEQVF-----EQCQQFEEKRLVFLK 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 44555432 3466788899999999999999999999 7888899 999999999999985
No 74
>cd07681 F-BAR_PACSIN3 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSIN 3 or Syndapin III is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSIN 3 contains an N-terminal F-BAR domain and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to
Probab=92.84 E-value=1.7 Score=42.80 Aligned_cols=49 Identities=20% Similarity=0.303 Sum_probs=45.2
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 113 GSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
.+..+++|+..+|+++.++...+.+.| +++...| +.||.||.+|+++|+
T Consensus 179 K~~~~~~k~~~~Y~~~v~~L~~~~~~w~e~m~~~~-----d~~Q~~EeeRi~flK 228 (258)
T cd07681 179 KCTQEAEKAKEQYEKALEELNRYNPRYMEDMEQAF-----EICQEAERKRLCFFK 228 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 578899999999999999999999999 7888899 999999999999985
No 75
>cd07646 I-BAR_IMD_IRSp53 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Insulin Receptor tyrosine kinase Substrate p53. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. IRSp53 (Insulin Receptor tyrosine kinase Substrate p53) is also known as BAIAP2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2). It is a scaffolding protein that takes part in many signaling pathways including Cdc42-induced filopodia formation, Rac-mediated lamellipodia extension, and spine morphogenesis. IRSp53 exists as multiple splicing variants that differ mainly at the C-termini. One variant (T-form) is expressed exclusively in human breast cancer cells. The gene encoding IRSp53 is a putative susceptibility gene for Gilles de la Tourette syndrome. IRSp53 contains an N-terminal IMD, a CRIB (Cdc42 and Rac interactive binding motif), an SH3 domain, and a WASP
Probab=92.68 E-value=10 Score=36.78 Aligned_cols=141 Identities=15% Similarity=0.223 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhhhhhhccCchHHHHH
Q psy17650 5 ENNSKLFGKLAKQSGG-SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCK-YTEELQKKHKLVKEEQGPTLEIVQ 82 (396)
Q Consensus 5 e~YAKsL~KLAKka~~-~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~-f~eeQkk~hKk~ke~~~~~~ea~k 82 (396)
+.|--.|.|++-.|.+ -|+ +..=+++.. ++..|.++-..|.+..|.+.. ..-.. -++++-. .+-+.
T Consensus 46 ~~y~dAl~Kige~A~~s~gS-keLG~~L~~----m~~~hr~i~~~le~~lk~Fh~eli~pL---E~k~E~D----~k~i~ 113 (232)
T cd07646 46 KGYFDALVKMGELASESQGS-KELGDVLFQ----MAEVHRQIQNQLEEMLKSFHNELLTQL---EQKVELD----SRYLT 113 (232)
T ss_pred HHHHHHHHHHHHHhhcCCCc-hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHH
Confidence 5678888888888877 565 444444443 777777766666554433321 11111 1122110 01111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 83 TIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVK------KAQEDYKTIVDKYALIKEDFEKRMSTSCKI 156 (396)
Q Consensus 83 ~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~k------KA~e~Yk~~v~kye~~r~~wE~~m~~~cq~ 156 (396)
.-+++++.-.|.|-.-..+|+ .|+.|++.|.. |-.+.+.++++.++.-+.+.+.=..+.|+.
T Consensus 114 a~~Kky~~e~k~k~~sleK~q------------seLKKlRrKsqg~k~~~ky~~ke~q~~~~~~~~q~ele~f~~~~~k~ 181 (232)
T cd07646 114 AALKKYQTEHRSKGESLEKCQ------------AELKKLRKKSQGSKNPQKYSDKELQYIEAISNKQGELENYVSDGYKT 181 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHhhccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112333333333332222222 23444443322 234556778888888888888888899988
Q ss_pred Hhhccccchhhhh
Q psy17650 157 RNDDRDHKIHVEI 169 (396)
Q Consensus 157 Fqd~E~~Ri~v~i 169 (396)
--.+|.+|+-+.+
T Consensus 182 Al~EErRRycflv 194 (232)
T cd07646 182 ALTEERRRYCFLV 194 (232)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888886533
No 76
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=92.46 E-value=9.9 Score=35.99 Aligned_cols=15 Identities=20% Similarity=0.087 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q psy17650 94 AKDVYLQKCEELDKL 108 (396)
Q Consensus 94 aKk~Y~~~CkE~E~l 108 (396)
+-..|+..+.+++++
T Consensus 113 ~~~~~~~~~~~L~k~ 127 (216)
T cd07627 113 LWQYWQSAESELSKK 127 (216)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444443
No 77
>cd07673 F-BAR_FCHO2 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 2 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. The specific function of FCH domain Only 2 (FCHO2) is still unknown. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO1 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=92.24 E-value=3 Score=41.12 Aligned_cols=47 Identities=17% Similarity=0.101 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 115 AKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 115 ~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
...+.|+...|+.+.+.|...-..| +.+...| +.||.||++|.++|+
T Consensus 163 ~~k~~ka~~~Y~~~v~~l~~~~~~~~~~m~~~~-----~~~Q~~Ee~Ri~~~k 210 (269)
T cd07673 163 AVKSKKATESYKLYVEKYALAKADFEQKMTETA-----QKFQDIEETHLIRIK 210 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 3556778888888888888888888 6666667 889999999998874
No 78
>cd07619 BAR_Rich2 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 2 (Rich2) is a Rho GTPase activating protein that interacts with CD317, a lipid raft-associated integral membrane protein. It plays a role in actin cytoskeleton organization and the maintenance of microvilli in polarized epithelial cells. Rich2 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=92.09 E-value=13 Score=36.53 Aligned_cols=56 Identities=13% Similarity=0.151 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy17650 7 NSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEE 62 (396)
Q Consensus 7 YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~ee 62 (396)
-+..|.+-++..+.-+-|..+...+-....+||+...++-..+ +..++++..+.+.
T Consensus 62 L~q~M~~~g~elg~~s~lg~aL~~~gea~~kla~a~~~~d~~i~~~fl~PL~~~le~ 118 (248)
T cd07619 62 LAQCMVEGAAVLGDDSLLGKMLKLCGETEDKLAQELILFELQIERDVVEPLYVLAEV 118 (248)
T ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3555666666655466778889999999999999999998888 6888999988874
No 79
>cd07674 F-BAR_FCHO1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH domain Only 1 protein. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH domain Only 1 (FCHO1) may be involved in clathrin-coated vesicle formation. It contains an N-terminal F-BAR domain and a C-terminal domain of unknown function named SAFF which is also present in FCHO2 and endophilin interacting protein 1. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.80 E-value=13 Score=36.29 Aligned_cols=44 Identities=11% Similarity=0.155 Sum_probs=34.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchh
Q psy17650 118 LEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 118 ieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~ 166 (396)
++|+...++++.+.|......| +.|...| +.||.||..|..+|+
T Consensus 159 ~~ka~~~y~~~~~ky~~~~~~~~~~m~~~~-----~~~Q~~Ee~Ri~~lk 203 (261)
T cd07674 159 TKKAAESLRGSVEKYNRARGDFEQKMLESA-----QKFQDIEETHLRHMK 203 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHH
Confidence 5566667777777777777777 6777777 889999999988874
No 80
>cd07656 F-BAR_srGAP The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Slit-Robo GTPase Activating Proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs, all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=91.57 E-value=7.8 Score=37.69 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=19.5
Q ss_pred ChhHHHHHHHH-------HHhHHHHHHHHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELK-------VKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 114 s~KeieKa~~K-------~kKA~e~Yk~~v~kye~~r~~w 146 (396)
+.++++|++.+ +.+|..+|-.++...|.....|
T Consensus 181 ~~~~~eK~k~k~~~~~~k~~~akNeYll~l~~aN~~~~~y 220 (241)
T cd07656 181 IEKEVEKRQAKYSEAKLKCTKARNEYLLNLAAANATIHKY 220 (241)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554443 3445566777777776666655
No 81
>KOG2398|consensus
Probab=91.49 E-value=4.1 Score=44.81 Aligned_cols=80 Identities=58% Similarity=1.054 Sum_probs=78.0
Q ss_pred cccCCCCCCcccccccchhhHHHHHHHHhhhhccCCCccceEeeecceeecccchhhhhhhCCCCCcceeEEeccccccc
Q psy17650 307 TNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIE 386 (396)
Q Consensus 307 ~~~srgpsp~~~~~~~~~p~a~a~~e~~~~~f~g~~~~~c~v~~~g~~~~sfp~g~~~~~~~~p~~~~l~f~~~~~~~~~ 386 (396)
+|.+|||+|++||.+|.+|||+||+|||||||+|.++. |+||++|+||+|||+||.+++.+||+|+.|.||+.|+.+|+
T Consensus 532 ~~~~~g~s~~~~~~s~~~~i~~a~~~~~~~~~~~~~~s-~~~~~~~~~~~s~~~~i~~~~~~n~~~~~~~fr~~~~~~~~ 610 (611)
T KOG2398|consen 532 VGSSRGPSPITLGGSDGLPIAAAFAEIVHAYFEGPDES-CIVKDTGEMMLSFPAGITGLVAGNPDPARLDFRLLNVRNIE 610 (611)
T ss_pred cccCCCCCcccCCCCCcchhhhhhhhcchhhhcCCCcc-eeeeeeEEEEEeeccchhhhhcCCCCccccccccccceecc
Confidence 39999999999999999999999999999999999998 99999999999999999999999999999999999999988
Q ss_pred c
Q psy17650 387 N 387 (396)
Q Consensus 387 ~ 387 (396)
+
T Consensus 611 ~ 611 (611)
T KOG2398|consen 611 N 611 (611)
T ss_pred C
Confidence 5
No 82
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=91.38 E-value=10 Score=36.62 Aligned_cols=92 Identities=16% Similarity=0.225 Sum_probs=48.7
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKV----NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKD 96 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL----~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk 96 (396)
.+.|..++..+-.-.|++..+|...++.- .|.++.-..+.... |-+ ..--.++.+.|+..-..++|+|.
T Consensus 76 ~t~L~~~ls~lae~~ek~~~l~~r~A~~d~l~L~e~L~~Y~r~~~A~----K~~---l~rR~ral~~~q~A~k~L~KaR~ 148 (219)
T cd07621 76 PTPLDKFLLKVAETFEKLRKLEGRVASDEDLKLSDTLRYYMRDTQAA----KDL---LYRRLRCLANYENANKNLEKARA 148 (219)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHhHh
Confidence 45577777777777777777777776633 33333333322221 221 11223455566666666666653
Q ss_pred HHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHH
Q psy17650 97 VYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIV 136 (396)
Q Consensus 97 ~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v 136 (396)
..+++..++.+.+.|.+.|.+..
T Consensus 149 -----------------k~~~v~~AE~~~~~a~~~Fe~iS 171 (219)
T cd07621 149 -----------------KNKDVHAAEAAQQEACEKFESMS 171 (219)
T ss_pred -----------------chhhHHHHHHHHHHHHHHHHHHH
Confidence 13566666665555555544443
No 83
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=91.13 E-value=16 Score=35.78 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
|...|..|.+-++..+.-..|..+...+-.-..++|..+.+.=..+ +..++++..|.+..
T Consensus 59 ~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~d 119 (246)
T cd07618 59 LTALAQNMQEGSAQLGEESLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEVE 119 (246)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhH
Confidence 4556666776666665433366788888888888998888877777 57888888887753
No 84
>cd07623 BAR_SNX1_2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 1 and 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX1, SNX2, and similar proteins. SNX1 and SNX2 are components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), wh
Probab=90.96 E-value=12 Score=35.59 Aligned_cols=13 Identities=23% Similarity=0.192 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHh
Q psy17650 6 NNSKLFGKLAKQS 18 (396)
Q Consensus 6 ~YAKsL~KLAKka 18 (396)
.|-.+|.+|.+.+
T Consensus 23 ~Le~~Lk~l~~~~ 35 (224)
T cd07623 23 NLDQQLRKLHASV 35 (224)
T ss_pred HHHHHHHHHHHHH
Confidence 3445666666654
No 85
>cd00011 BAR_Arfaptin_like The Bin/Amphiphysin/Rvs (BAR) domain of Arfaptin-like proteins, a dimerization module that binds and bends membranes. The BAR domain of Arfaptin-like proteins, also called the Arfaptin domain, is a dimerization, lipid binding and curvature sensing module present in Arfaptins, PICK1, ICA69, and similar proteins. Arfaptins are ubiquitously expressed proteins implicated in mediating cross-talk between Rac, a member of the Rho family GTPases, and Arf (ADP-ribosylation factor) small GTPases. Arfaptins bind to GTP-bound Arf1, Arf5, and Arf6, with strongest binding to GTP-Arf1. Arfaptins also binds to Rac-GTP and Rac-GDP with similar affinities. The Arfs are thought to bind to the same surface as Rac, and their binding is mutually exclusive. Protein Interacting with C Kinase 1 (PICK1) plays a key role in the trafficking of AMPA receptors, which are critical for regulating synaptic strength and may be important in cellular processes involved in learning and memory. Is
Probab=90.91 E-value=5.3 Score=38.09 Aligned_cols=69 Identities=19% Similarity=0.203 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy17650 90 VLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 90 ~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v 167 (396)
..+.||=-|.+.|.+.+.+..+.- -++++-..|++.++..++.+-++|+..|.| .|++.+-++..|.++
T Consensus 106 ~ye~aR~EY~a~~l~~ke~~~e~~--~~~~~~~~k~r~~q~~~~~~k~kf~kLr~D-------v~~Kl~lL~~~r~~~ 174 (203)
T cd00011 106 QYEAARLEYDAYRLDLKELSLEPR--DDTAGTRGRLRSAQATFQEHRDKFEKLRGD-------VAIKLKFLEENKIKV 174 (203)
T ss_pred HHHHHHHhHHHHHHHHHHhcccCC--cccccchHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhHHHH
Confidence 456899999999999999854321 113344456777777888888888887765 577777777777654
No 86
>cd07592 BAR_Endophilin_A The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms. Endophilin-A proteins are enriched in the bra
Probab=90.79 E-value=16 Score=35.18 Aligned_cols=56 Identities=11% Similarity=0.254 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 8 SKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 8 AKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
|..|.+-+...+.-..|..+...+-..-.++|....++...+ ...+.+|..+.+.+
T Consensus 70 g~~M~~~g~elg~~S~~G~aL~~~g~a~~kIa~~~~~~d~~v~~~fl~pL~~~l~~d 126 (223)
T cd07592 70 GEVMLKYGRELGEDSNFGQALVEVGEALKQLAEVKDSLDDNVKQNFLDPLQQLQDKD 126 (223)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444333333455666666666777777777777777 46667777665443
No 87
>KOG3565|consensus
Probab=90.26 E-value=5.4 Score=44.13 Aligned_cols=81 Identities=19% Similarity=0.262 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChhHHHHHHHHH-------HhHHHHHHHHHHHHHHHHH----HH
Q psy17650 79 EIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-DNGSAKDLEKAELKV-------KKAQEDYKTIVDKYALIKE----DF 146 (396)
Q Consensus 79 ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-e~~s~KeieKa~~K~-------kKA~e~Yk~~v~kye~~r~----~w 146 (396)
.++......+..+.|+++.|+..|...-++.. -..+.-+++|+++-. +...++|...+-+.+.++. .+
T Consensus 138 ~~~ne~~~~~~~~~k~~~~~~ea~~~~~k~d~~l~~s~~e~e~~~~~~~~~~~m~e~~~~~~~~~~~k~n~~q~~~~~q~ 217 (640)
T KOG3565|consen 138 STVNEHEDSYYQLEKRRKDQEEAEQFFHKMDENLEGSRLELEKARKLALLREEMLEGSKQDYLSLLRKFNHVQKQYYFQF 217 (640)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcCccccCCccc
Confidence 34445566777888999999999988333322 123333444433322 2223345455555555554 22
Q ss_pred HHHHHHHHHHHhh
Q psy17650 147 EKRMSTSCKIRND 159 (396)
Q Consensus 147 E~~m~~~cq~Fqd 159 (396)
.-...+.|++|+.
T Consensus 218 iP~i~d~~~~l~~ 230 (640)
T KOG3565|consen 218 IPLIVDSLQRLEE 230 (640)
T ss_pred ccHHHHHHHHHHH
Confidence 3334466776654
No 88
>KOG3771|consensus
Probab=89.78 E-value=9.5 Score=40.45 Aligned_cols=102 Identities=14% Similarity=0.154 Sum_probs=56.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYL 99 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~ 99 (396)
|...-..-+.+..-.++...+-.++.++|. .++.+|.+|..-.....|+++-.. .+......+|..|+
T Consensus 78 y~p~~~g~~~l~~v~~~~d~l~~d~~~~l~d~vl~pl~~~~~~fpdik~~i~KR~-----------~Kl~DyD~~r~~~~ 146 (460)
T KOG3771|consen 78 YEPDWPGRDYLQAVADNDDLLWKDLDQKLVDQVLLPLDTYLGQFPDIKKAIAKRG-----------RKLVDYDSARHSFE 146 (460)
T ss_pred cCcccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhchhHHHHHHhhc-----------chhhhhHHHHHHHH
Confidence 444444445566677777777888888884 566788887764433333332111 11111233343442
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 100 QKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 100 ~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
..-.. .....+++.|++..+.+|++.|..+...+
T Consensus 147 kvq~~------k~kd~~k~~KAeeEl~~Aq~~fE~lN~~L 180 (460)
T KOG3771|consen 147 KLQAK------KKKDEAKLAKAEEELEKAQQVFEELNNEL 180 (460)
T ss_pred HHHHh------cCCChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 22111 02356667778888888887766665554
No 89
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=89.50 E-value=22 Score=34.77 Aligned_cols=114 Identities=18% Similarity=0.190 Sum_probs=65.2
Q ss_pred HHHHHHHHHH---HHhCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 6 NNSKLFGKLA---KQSGG-SGTFAPLWQVLKTSIEKIATVQVKMMQKVN----DLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 6 ~YAKsL~KLA---Kka~~-~GTl~~sW~~lk~e~Ekla~~H~~La~kL~----EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
.|...+..+. .-|++ .|.|...+..|-.-+|+.+..|.+.+..|. +.+++...|.+..|---|+ .
T Consensus 86 ey~~~~~~fgk~~~lws~~E~~L~~~L~~~a~~~d~~~~~~~~~~~~l~~~f~~~Lkeyv~y~~slK~vlk~---R---- 158 (243)
T cd07666 86 EYFEELKEYGPIYTLWSASEEELADSLKGMASCIDRCCKATDKRMKGLSEQLLPVIHEYVLYSETLMGVIKR---R---- 158 (243)
T ss_pred HHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H----
Confidence 4555555444 46888 888999999999999999999998777773 3444445555544322111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 78 LEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 78 ~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
..++..+.. |.-|..+-+ .|+ + ....|+++++.|++.|..+.+.=++++
T Consensus 159 ~~~Q~~le~--------k~e~l~k~~-~dr---~-~~~~ev~~~e~kve~a~~~~k~e~~Rf 207 (243)
T cd07666 159 DQIQAELDS--------KVEALANKK-ADR---D-LLKEEIEKLEDKVECANNALKADWERW 207 (243)
T ss_pred HHHHHHHHH--------HHHHHHhhh-hhH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 012222222 222222211 121 1 234588888888888866555444444
No 90
>cd07634 BAR_GAP10-like The Bin/Amphiphysin/Rvs (BAR) domain of Rho GTPase activating protein 10-like. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This group is composed of uncharacterized proteins called Rho GTPase activating protein (GAP) 10-like. GAP10-like may be a GAP with activity towards RhoA and Cdc42. Similar to GRAF and GRAF2, it contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of the related proteins GRAF and OPHN1, directly interact with their Rho GAP domains and inhibit theiractivity. The autoinhibited proteins are capable of binding membranes and tubulating liposomes, showing that the membrane-tubulation and GAP-inhibitory functions of the BAR domain
Probab=89.41 E-value=14 Score=35.43 Aligned_cols=61 Identities=13% Similarity=0.176 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHHHhCCCC------ChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSG------TFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~G------Tl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
...|+.+|..+.....|-+ .+..++..|-.-+-.|.+.|..|.+..+ -++++|..|++++-
T Consensus 39 ~~~Fa~sL~~f~~~~igd~~tDde~~i~~~l~~Fs~~l~el~~~~~~L~~~~~~~l~~pL~~f~k~dl 106 (207)
T cd07634 39 VQKFSQSLQDFQFECIGDAETDDEISIAQSLKEFARLLIAVEEERRRLIQNANDVLIAPLEKFRKEQI 106 (207)
T ss_pred HHHHHHHHHHHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666666665554422 4778888888888889999999999995 67789999999986
No 91
>cd07664 BAR_SNX2 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX2 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=89.01 E-value=16 Score=35.35 Aligned_cols=23 Identities=26% Similarity=0.361 Sum_probs=12.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 124 KVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 124 K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
|+..+.++++..-.+.+.++.+|
T Consensus 160 K~~~~~~ev~~~e~~~~~a~~~f 182 (234)
T cd07664 160 KLQQAKDEIKEWEAKVQQGERDF 182 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555
No 92
>cd07644 I-BAR_IMD_BAIAP2L2 Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. This group is composed of uncharacterized proteins known as BAIAP2L2 (Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-Like 2). They contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. The related proteins, BAIAP2L1 and IRSp53, function as regulators of membrane dynamics and the actin cytoskeleton. The IMD domain binds and bundles actin filaments, binds membranes and produces membrane protrusions, and interacts with the small GTPase Rac.
Probab=88.11 E-value=25 Score=33.71 Aligned_cols=136 Identities=15% Similarity=0.236 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhccCchHHHHHH
Q psy17650 5 ENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKK-HKLVKEEQGPTLEIVQT 83 (396)
Q Consensus 5 e~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~-hKk~ke~~~~~~ea~k~ 83 (396)
+.|-..|.|+.-.+...+|-+..=+++.. +++.|.++-..|.+..|. |..|.--. -|+++-. .+-+..
T Consensus 44 ~~Yf~Al~KiGe~A~~s~~s~~LG~vLmq----isev~r~i~~~le~~lk~---FH~ell~~LEkk~elD----~kyi~~ 112 (215)
T cd07644 44 EVYFSAIAKIGEQALQSLTSQSLGEILIQ----MSETQRKLSADLEVVFQT---FHVDLLQHMDKNTKLD----MQFIED 112 (215)
T ss_pred HHHHHHHHHHHHHHhcCCcchHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh----HHHHHH
Confidence 45666666666666554454555555554 667777766666555433 33222111 1222111 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17650 84 IQSTTLVLQKAKDVYLQKCE-ELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRD 162 (396)
Q Consensus 84 ~q~~~~~l~KaKk~Y~~~Ck-E~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~ 162 (396)
-+++++.-+|.|-.-..+|. |+.++|+ |.+|-.-+.+.+|+.+ +.+-+.-..+.|+.-.-+|.
T Consensus 113 s~KkYq~E~r~k~dsleK~~selkk~rr-------------k~qkn~~e~kE~~~~l---q~~~~~f~~~~~k~Al~eEr 176 (215)
T cd07644 113 SRRVYELEYRHRAANLEKCMSELWRMER-------------QRDRNVREMKENVNRL---RQSMQAFLKESQRAAELEEK 176 (215)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHH-------------hhcCCchhhHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence 23444445555544444443 2444433 2222112223344444 44444446677887777888
Q ss_pred cchhh
Q psy17650 163 HKIHV 167 (396)
Q Consensus 163 ~Ri~v 167 (396)
+|+-+
T Consensus 177 RRy~F 181 (215)
T cd07644 177 RRYRF 181 (215)
T ss_pred HHHHH
Confidence 88764
No 93
>cd07665 BAR_SNX1 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX1 is a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi. The retromer consists of a cargo-recognition subcomplex and a subcomplex formed by a dimer of sorting nexins (SNX1 and/or SNX2), which ensures effcient cargo sorting by facilitating proper membrane localization
Probab=87.98 E-value=21 Score=34.72 Aligned_cols=84 Identities=11% Similarity=0.161 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH-----HHHHHhHHHHHHHHHHHHHHHHHHHHH---H
Q psy17650 78 LEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKA-----ELKVKKAQEDYKTIVDKYALIKEDFEK---R 149 (396)
Q Consensus 78 ~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa-----~~K~kKA~e~Yk~~v~kye~~r~~wE~---~ 149 (396)
...+......+..=.|+-..|+..+.++.+.+.. ++|+ ..|+..+..++...-.+.+.++.+|++ .
T Consensus 115 iRli~SVK~~f~~R~k~~~~~~~~~~~l~kKr~~------~~Kl~~~~~~dK~~~a~~Ev~e~e~k~~~a~~~fe~is~~ 188 (234)
T cd07665 115 IRLLSAVRGAFDQRMKTWQRWQDAQAMLQKKREA------EARLLWANKPDKLQQAKDEIAEWESRVTQYERDFERISAT 188 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444455556667777777776554321 1111 235556667777777777777777743 3
Q ss_pred HHHHHHHHhhccccchhh
Q psy17650 150 MSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 150 m~~~cq~Fqd~E~~Ri~v 167 (396)
|..--.+||.++.+-|+.
T Consensus 189 ik~El~rFe~er~~Dfk~ 206 (234)
T cd07665 189 VRKEVIRFEKEKSKDFKN 206 (234)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333345666666555543
No 94
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=87.90 E-value=20 Score=34.65 Aligned_cols=15 Identities=13% Similarity=0.206 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHhh
Q psy17650 145 DFEKRMSTSCKIRND 159 (396)
Q Consensus 145 ~wE~~m~~~cq~Fqd 159 (396)
+||++..++|+.|++
T Consensus 154 ~aE~~~~~a~~~Fe~ 168 (218)
T cd07662 154 QAETTQQLCCQKFEK 168 (218)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355555555555544
No 95
>cd07606 BAR_SFC_plant The Bin/Amphiphysin/Rvs (BAR) domain of the plant protein SCARFACE (SFC). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. The plant protein SCARFACE (SFC), also called VAscular Network 3 (VAN3), is a plant ACAP (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein), an Arf GTPase Activating Protein (GAP) that plays a role in the trafficking of auxin efflux regulators from the plasma membrane to the endosome. It is required for the normal vein patterning in leaves. SCF contains an N-terminal BAR domain, followed by a Pleckstrin Homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=87.58 E-value=26 Score=33.26 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 26 PLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 26 ~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
+++..|-.-+..+..+|..|...++ -++.+|.+|+++.-
T Consensus 63 ~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~pL~~F~k~Dl 102 (202)
T cd07606 63 PVMTKFTSALREIGSYKEVLRSQVEHMLNDRLAQFADTDL 102 (202)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888889999999999996 56689999998875
No 96
>cd07642 BAR_ASAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ASAP2 (ArfGAP with SH3 domain, ANK repeat and PH domain containing protein 2) is also known as DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. ASAP2 mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, i
Probab=87.54 E-value=28 Score=33.55 Aligned_cols=93 Identities=14% Similarity=0.182 Sum_probs=63.9
Q ss_pred hhHHHHHHHHHHHHHh-C-CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhhccCchHH
Q psy17650 3 IEENNSKLFGKLAKQS-G-GSGTFAPLWQVLKTSIEKIATVQVKMMQKVND-LVKDVCKYTEELQKKHKLVKEEQGPTLE 79 (396)
Q Consensus 3 IEe~YAKsL~KLAKka-~-~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~E-liK~l~~f~eeQkk~hKk~ke~~~~~~e 79 (396)
-++.|+..|-+|...+ + +-..+..++..|-.-.-.|..+|-.|.+.++. +..++..|.++-- |.+|++
T Consensus 38 ~~~~f~~~L~~LG~~~l~~dd~~~~~~l~kf~~~~~El~~l~~~L~~~~~~~I~~pl~s~lK~dL---r~vK~d------ 108 (215)
T cd07642 38 NEEQYTQALEKFGSNCVCRDDPDLGSAFLKFSVFTKELTALFKNLVQNMNNIITFPLDSLLKGDL---KGVKGD------ 108 (215)
T ss_pred HHHHHHHHHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHhHHH------
Confidence 4678888888888752 2 24445677778888888888999999999964 4468888887432 333321
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17650 80 IVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD 111 (396)
Q Consensus 80 a~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke 111 (396)
..+...|+.+-|+.+.-..++.++.
T Consensus 109 -------~KK~fdK~~~dyE~~~~k~ek~~r~ 133 (215)
T cd07642 109 -------LKKPFDKAWKDYETKVTKIEKEKKE 133 (215)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 1122468889999998877776653
No 97
>KOG2856|consensus
Probab=87.53 E-value=4.6 Score=41.77 Aligned_cols=39 Identities=15% Similarity=0.257 Sum_probs=32.5
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy17650 113 GSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMS 151 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~ 151 (396)
...+|++|.+.||+|+..+...+...| |+|.+.||+--.
T Consensus 188 K~k~evqktkekYektl~el~~yt~~YmE~MeqvFe~CQ~ 227 (472)
T KOG2856|consen 188 KCKQEVQKTKEKYEKTLAELNKYTPVYMEDMEQVFEQCQQ 227 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence 467899999999999999988888888 888888875443
No 98
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=87.43 E-value=28 Score=33.58 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHHH
Q psy17650 91 LQKAKDVYLQKCEEL 105 (396)
Q Consensus 91 l~KaKk~Y~~~CkE~ 105 (396)
++.+|...+.+++-+
T Consensus 118 ~~A~K~ll~rR~ral 132 (218)
T cd07663 118 IEAAKDLLYRRARAL 132 (218)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333444444444433
No 99
>smart00721 BAR BAR domain.
Probab=87.16 E-value=25 Score=32.67 Aligned_cols=21 Identities=24% Similarity=0.256 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q psy17650 89 LVLQKAKDVYLQKCEELDKLR 109 (396)
Q Consensus 89 ~~l~KaKk~Y~~~CkE~E~lr 109 (396)
..+.++++.++.+..+.|.++
T Consensus 134 ~~~~~~~kk~~~~~lDyD~~~ 154 (239)
T smart00721 134 KEIKKARKKLERKLLDYDSAR 154 (239)
T ss_pred HHHHHHHHHHHhHHHHHHHHH
Confidence 344455555555555555544
No 100
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=87.09 E-value=28 Score=32.98 Aligned_cols=20 Identities=30% Similarity=0.172 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17650 79 EIVQTIQSTTLVLQKAKDVY 98 (396)
Q Consensus 79 ea~k~~q~~~~~l~KaKk~Y 98 (396)
++++.|+.....+.|++...
T Consensus 112 ~~~~~~~~~~~~L~k~~~~~ 131 (216)
T cd07627 112 KLWQYWQSAESELSKKKAQL 131 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555554433
No 101
>cd07620 BAR_SH3BP1 The Bin/Amphiphysin/Rvs (BAR) domain of SH3-domain Binding Protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. SH3-domain binding protein 1 (SH3BP1 or 3BP-1) is a Rac GTPase activating protein that inhibits Rac-mediated platelet-derived growth factor (PDGF)-induced membrane ruffling. SH3BP1 contains an N-terminal BAR domain followed by a GAP domain for Rho and Rac GTPases and a C-terminal proline-rich domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.82 E-value=34 Score=33.81 Aligned_cols=130 Identities=13% Similarity=0.098 Sum_probs=68.6
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHH
Q psy17650 11 FGKLAKQSGGSGTFAPLWQVLKTSI-EKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTT 88 (396)
Q Consensus 11 L~KLAKka~~~GTl~~sW~~lk~e~-Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~ 88 (396)
|.+-.+..+.-+.|..+. .+..++ -+||+.+.++=..+ ++++.+|..-.++- ++ .+.+..|.+++..
T Consensus 66 M~es~keLg~dS~lg~aL-e~~~~~e~~LA~~l~~~E~~Ve~~vl~PL~~L~e~d------L~----~I~k~rKkL~k~~ 134 (257)
T cd07620 66 MAESFKDFDAESSIRRVL-EMCCFMQNMLANILADFEMKVEKDVLQPLNKLSEED------LP----EILKNKKQFAKLT 134 (257)
T ss_pred HHHHHhhCCCcchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh------HH----HHHHHHHHHHhHH
Confidence 333333333345678888 666677 88999999998888 68889998877632 11 1112222233333
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCh--hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 89 LVLQKAKDVYLQKCEELDKLRRDNGSA--KDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMS 151 (396)
Q Consensus 89 ~~l~KaKk~Y~~~CkE~E~lrke~~s~--KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~ 151 (396)
....-+|..|++.-+-....-..+.+. -+--....|.+-..+++..+..|+|..+..|+..|.
T Consensus 135 LD~D~~K~R~~~a~k~s~~~~~~~~~~~~~~~~~~~~K~~~lkeE~eea~~K~E~~kd~~~a~My 199 (257)
T cd07620 135 TDWNSAKSRSPQAAGRSPRSGGRSEEVGEHQGIRRANKGEPLKEEEEECWRKLEQCKDQYSADLY 199 (257)
T ss_pred hhHHHHHHHHHHhhccccCCccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444544322111000000000 000012234445567777777777777877877777
No 102
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=86.31 E-value=15 Score=34.73 Aligned_cols=14 Identities=7% Similarity=-0.078 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHhh
Q psy17650 146 FEKRMSTSCKIRND 159 (396)
Q Consensus 146 wE~~m~~~cq~Fqd 159 (396)
||..+..+|+.|++
T Consensus 137 ae~~~~~a~~~fe~ 150 (198)
T cd07630 137 AEEAKKKAETEFEE 150 (198)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 103
>cd07601 BAR_APPL The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains, and are localized to cytoplasmic membranes. Vertebrates contain two APPL proteins, APPL1 and APPL2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=85.71 E-value=35 Score=32.83 Aligned_cols=61 Identities=13% Similarity=0.282 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHHH--hCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 4 EENNSKLFGKLAKQ--SGG--SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 4 Ee~YAKsL~KLAKk--a~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
...++++|..+++. .+| =--.-.+...|-.-+..++..|..|...++ -++.+|.+|+++.-
T Consensus 39 ~~~F~~~L~ef~~~~f~~~~dDe~~~~~l~kFs~~l~El~~~~~~L~~q~~~~l~~pL~~F~k~Dl 104 (215)
T cd07601 39 TQALSKKLGEYEKQKFELGRDDEILVSTLKQFSKVVDELSTMHSTLSSQLADTVLHPISQFMESDL 104 (215)
T ss_pred HHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666666654 222 000114788888899999999999999995 67789999998875
No 104
>KOG1118|consensus
Probab=85.68 E-value=45 Score=34.04 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHH
Q psy17650 6 NNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTI 84 (396)
Q Consensus 6 ~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~ 84 (396)
.-++.|+++.|..++-.+|..++-.+...+-.+|.+.-+|...+ +--+.+++.++..+.
T Consensus 87 ~Lg~~mik~gkeLg~dSs~g~tl~~~Gesm~~i~evk~sl~~~vkq~FldpL~~l~~~el-------------------- 146 (366)
T KOG1118|consen 87 LLGDVMIKHGKELGDDSSFGHTLIDAGESMREIGEVKDSLDDNVKQNFLDPLQNLQLKEL-------------------- 146 (366)
T ss_pred HHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHH--------------------
Confidence 45677777777776656666677777777777777777777777 355566666532221
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKA-QEDYKTIVDKYALIKEDFEKRMST 152 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA-~e~Yk~~v~kye~~r~~wE~~m~~ 152 (396)
+.++-.++..+.+-.+.|-+.+. ..|+ .|+.+++.+|||+....+|..|..
T Consensus 147 ----K~i~hh~KKLEgRRldyD~kkkk-------------~~K~~dEelrqA~eKfEESkE~aE~sM~n 198 (366)
T KOG1118|consen 147 ----KDIQHHRKKLEGRRLDYDYKKKK-------------QGKIKDEELRQALEKFEESKELAEDSMFN 198 (366)
T ss_pred ----HHHHHHHHHhhhhhhHHHHHHHH-------------hccCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222222222222111 0111 578999999999999999999973
No 105
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=85.26 E-value=38 Score=32.90 Aligned_cols=60 Identities=10% Similarity=0.113 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
|+.-+..|.+-+...+.-.-|..+...+-..-+++|....++...+ ..-+.++..|.+..
T Consensus 71 ~~~Lg~~M~~~g~~~g~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~d 131 (229)
T cd07616 71 PELLGQYMIDAGNEFGPGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGD 131 (229)
T ss_pred HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666665555444567788888888889999999888777 57788888887653
No 106
>cd07643 I-BAR_IMD_MIM Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), of Missing In Metastasis. The IMD domain, also called Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions. Members of this subfamily include missing in metastasis (MIM) or metastasis suppressor 1 (MTSS1), metastasis suppressor 1-like (MTSSL) or ABBA (Actin-Bundling protein with BAIAP2 homology), and similar proteins. They contain an N-terminal IMD and a WASP homology 2 (WH2) actin-binding motif at the C-terminus. MIM was originally identified as a missing transcript from metastatic bladder and prostate cancer cells. It is a scaffold protein that functions in a signaling pathway between the PDGF receptor, Src kinases, and actin assembly. It may also function as a cofactor of the Sonic hedgehog (Shh) transcriptional pathway and may participate in tumor development and progression via this pathway. ABBA regulate
Probab=85.16 E-value=39 Score=32.91 Aligned_cols=58 Identities=12% Similarity=0.094 Sum_probs=31.9
Q ss_pred HHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhccccchh---hhhccCCC
Q psy17650 117 DLEKAELKVKKAQEDYK----TIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIH---VEIKPLSA 174 (396)
Q Consensus 117 eieKa~~K~kKA~e~Yk----~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~---v~ik~~~~ 174 (396)
|..|++.|.+|...+|. ++...+++-+..-|+.-..+++.-=-+|..||- -.++|+++
T Consensus 137 dt~klqkk~rKg~~~~~~~ldsa~~dvn~k~~~lEe~ek~alR~aLiEER~Rfc~Fvs~l~pVl~ 201 (231)
T cd07643 137 DTIRLQKKARKGKGDLQPQLDSAMQDVNDKYLLLEETEKKAVRNALIEERGRFCTFVSFLKPVLD 201 (231)
T ss_pred hHHHHHHHHhccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44566666666554443 444445555555566666666555445555542 35666665
No 107
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=84.99 E-value=39 Score=32.71 Aligned_cols=59 Identities=7% Similarity=0.157 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEE 62 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~ee 62 (396)
|+.-+..|.+-+...+.-.-|..+...+-...+++|....++...+ +.-++++..|.+.
T Consensus 71 ~~~Lg~~M~~~g~~~g~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~ 130 (220)
T cd07617 71 AELLGQYMTEAANDFGPGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEG 130 (220)
T ss_pred HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665544566788888888888898888888888 5777888877763
No 108
>cd07663 BAR_SNX5 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 5. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX5, abundantly expressed in macrophages, regulates macropinocytosis, a process that enables cells to internalize large amounts of external solutes. It may also be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It
Probab=84.39 E-value=41 Score=32.49 Aligned_cols=71 Identities=13% Similarity=0.114 Sum_probs=43.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAK 95 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaK 95 (396)
-+.|..++..+-.-.|++..+|...++.. --+...|..|....- .-|-+ ...-.++.+.|+..-.+|.|+|
T Consensus 75 ~t~L~kals~lae~~Ek~~~l~~r~A~~d~~~L~e~L~~Y~r~~~-A~K~l---l~rR~ral~~~e~A~~~L~KaR 146 (218)
T cd07663 75 PTVIKKYLLKVAELFEKLRKVEDRVASDQDLKLTELLRYYMLNIE-AAKDL---LYRRARALADYENSNKALDKAR 146 (218)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHH-HHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999887754 344444444443321 12222 1223456666666666666665
No 109
>PF03114 BAR: BAR domain; InterPro: IPR004148 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. ; GO: 0005515 protein binding, 0005737 cytoplasm; PDB: 4AVM_A 2D4C_C 1X03_A 1X04_A 2RND_A 2RMY_A 2FIC_A 2C08_A 2Z0V_A 3SOG_A ....
Probab=84.26 E-value=30 Score=31.36 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 77 TLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR 110 (396)
Q Consensus 77 ~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk 110 (396)
+.+-++.+......+.+.++.++.+-.+.|.++.
T Consensus 119 vi~pl~~~~~~~~~i~~~~kkr~~~~ldyd~~~~ 152 (229)
T PF03114_consen 119 VIDPLKEFLKEFKEIKKLIKKREKKRLDYDSARS 152 (229)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666777777777777777777654
No 110
>cd07621 BAR_SNX5_6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 5 and 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Members of this subfamily include SNX5, SNX6, the mammalian SNX32, and similar proteins. SNX5 and SNX6 may be components of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. The function of SNX32 is still unknown. BAR domain
Probab=84.16 E-value=23 Score=34.19 Aligned_cols=58 Identities=24% Similarity=0.266 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 84 IQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 84 ~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd 159 (396)
+......+.-+|...+.+++-+-..+. ..+.++|++.+.++. .++|.+..++|+.|++
T Consensus 112 L~~Y~r~~~A~K~~l~rR~ral~~~q~---A~k~L~KaR~k~~~v---------------~~AE~~~~~a~~~Fe~ 169 (219)
T cd07621 112 LRYYMRDTQAAKDLLYRRLRCLANYEN---ANKNLEKARAKNKDV---------------HAAEAAQQEACEKFES 169 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhHhchhhH---------------HHHHHHHHHHHHHHHH
Confidence 344444555677777777766555543 455666666543221 3355555566666654
No 111
>KOG0250|consensus
Probab=83.90 E-value=44 Score=39.05 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHHh
Q psy17650 89 LVLQKAKDVYLQKCEELDKLRRD--NGSAKDLEKAELKVKK 127 (396)
Q Consensus 89 ~~l~KaKk~Y~~~CkE~E~lrke--~~s~KeieKa~~K~kK 127 (396)
..+.+.|+.|...|+.+..++++ +..+.++++.+.|++.
T Consensus 365 n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~ 405 (1074)
T KOG0250|consen 365 NSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQ 405 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33444555555555555555443 2455666666665543
No 112
>cd07600 BAR_Gvp36 The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Proteomic analysis shows that Golgi vesicle protein of 36 kDa (Gvp36) may be involved in vesicular trafficking and nutritional adaptation. A Saccharomyces cerevisiae strain deficient in Gvp36 shows defects in growth, in actin cytoskeleton polarization, in endocytosis, in vacuolar biogenesis, and in the cell cycle. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.83 E-value=45 Score=32.57 Aligned_cols=57 Identities=12% Similarity=0.068 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHhCC-CCC--------hHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 7 NSKLFGKLAKQSGG-SGT--------FAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 7 YAKsL~KLAKka~~-~GT--------l~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
.+-.|.+.+...+. +|. |..++..+-.--+++|+...++-..+ .+-+.+|..+.+.+
T Consensus 79 l~~aLs~~m~~~~~~l~~~~~~~~s~lg~aL~~~g~a~~kIa~ar~~~D~~I~~~Fl~pL~~~L~~d 145 (242)
T cd07600 79 LNHALSRAALASSLELKSLEPEDEDPLSKALGKYSDAEEKIAEARLEQDQLIQKEFNAKLRETLNTS 145 (242)
T ss_pred HHHHHHHHHHHHHHHhCccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555544444 444 77888888888888888888877777 57777887777743
No 113
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=83.80 E-value=41 Score=32.03 Aligned_cols=110 Identities=9% Similarity=0.134 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhhhhhccCchHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQ 82 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k 82 (396)
+..|+.+|..+..-..+-..+..++..|-.-+-.+...|..|.+..+ -++++|..|.++.. +.+||.
T Consensus 39 ~~~F~~~L~~f~~~~~~D~~i~~~l~kFs~~l~ei~~~~~~Ll~~~~~~l~~~L~~F~k~dl---~~vKe~--------- 106 (200)
T cd07639 39 SRAFVDGLCDLAHHGPKDPMMAECLEKFSDGLNHILDSHAELLEATQFSFKQQLQLLVKEDL---RGFRDA--------- 106 (200)
T ss_pred HHHHHHHHHHHhccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHH---------
Confidence 34555556555442222122678888888888889999999999995 67789999998874 234322
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHH
Q psy17650 83 TIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDY 132 (396)
Q Consensus 83 ~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Y 132 (396)
.+.-.|+-+.|++......++.+. -+.+++.+...+..++..|
T Consensus 107 -----kK~FdK~s~~~d~al~K~~~~~k~--k~~e~~Ea~~~l~~~R~~F 149 (200)
T cd07639 107 -----RKEFERGAESLEAALQHNAETPRR--KAQEVEEAAAALLGARATF 149 (200)
T ss_pred -----hhhHhhcchhHHHHHHHHhhcccc--chHHHHHHHHHHHHHHHHH
Confidence 112345556666664443333321 2335555555555554443
No 114
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=83.70 E-value=42 Score=32.82 Aligned_cols=110 Identities=23% Similarity=0.311 Sum_probs=63.4
Q ss_pred HHHHHHHHHHh-CC--CCChHHHHHHHHHH-HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc
Q psy17650 8 SKLFGKLAKQS-GG--SGTFAPLWQVLKTS-IEKI----------ATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEE 73 (396)
Q Consensus 8 AKsL~KLAKka-~~--~GTl~~sW~~lk~e-~Ekl----------a~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~ 73 (396)
||.++.+|..- .+ .++|-+.|.-+... +.++ ...|...+..+.+....+....++
T Consensus 96 AKe~v~laEq~l~~~~~~~~D~~wqEmLn~A~~kVneAE~ek~~ae~eH~~~~~~~~~ae~~v~~Lek~----------- 164 (239)
T PF05276_consen 96 AKEMVALAEQSLMSDSNWTFDPAWQEMLNHATQKVNEAEQEKTRAEREHQRRARIYNEAEQRVQQLEKK----------- 164 (239)
T ss_pred HHHHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 66677777543 22 35899999966542 2222 123333333333333333333322
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy17650 74 QGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKE 144 (396)
Q Consensus 74 ~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~ 144 (396)
....+.|||=-|+.+-.=.+.+.. ....|+.++.++..|...|..+...+|.+=.
T Consensus 165 -------------lkr~I~KSrPYfe~K~~~~~~l~~---~k~~v~~Le~~v~~aK~~Y~~ALrnLE~ISe 219 (239)
T PF05276_consen 165 -------------LKRAIKKSRPYFELKAKFNQQLEE---QKEKVEELEAKVKQAKSRYSEALRNLEQISE 219 (239)
T ss_pred -------------HHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333455666666655554444432 2456778889999999999999888877643
No 115
>cd07662 BAR_SNX6 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 6. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX6 forms a stable complex with SNX1 and may be a component of the retromer complex, a membrane coat multimeric complex required for endosomal retrieval of lysosomal hydrolase receptors to the Golgi, acting as a mammalian equivalent of yeast Vsp17p. It interacts with the receptor serine/threonine kinases from the transforming growth factor-beta family. It also plays
Probab=83.67 E-value=44 Score=32.31 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhHHHHHHHHH
Q psy17650 116 KDLEKAELKVKKAQEDYKTIV 136 (396)
Q Consensus 116 KeieKa~~K~kKA~e~Yk~~v 136 (396)
||+..++.+.+.|.+.|.+.-
T Consensus 150 kev~~aE~~~~~a~~~Fe~IS 170 (218)
T cd07662 150 KDVLQAETTQQLCCQKFEKIS 170 (218)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 777777777777776665543
No 116
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=82.94 E-value=48 Score=32.23 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=23.0
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
.++|+.|+....++..++.++.+++|+.....+
T Consensus 118 ~~~ei~k~r~e~~~ml~evK~~~E~y~k~~k~~ 150 (230)
T PF03904_consen 118 AQNEIKKVREENKSMLQEVKQSHEKYQKRQKSM 150 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556677777777777777777777776666555
No 117
>cd07633 BAR_OPHN1 The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin-1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Oligophrenin-1 (OPHN1) is a GTPase activating protein (GAP) with activity towards RhoA, Rac, and Cdc42, that is expressed in developing spinal cord and in adult brain areas with high plasticity. It plays a role in regulating the actin cystoskeleton as well as morphology changes in axons and dendrites, and may also function in modulating neuronal connectivity. Mutations in the OPHN1 gene causes X-linked mental retardation associated with cerebellar hypoplasia, lateral ventricle enlargement and epilepsy. OPHN1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.74 E-value=46 Score=31.91 Aligned_cols=42 Identities=14% Similarity=0.260 Sum_probs=36.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy17650 24 FAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQK 65 (396)
Q Consensus 24 l~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk 65 (396)
...++..|-.-...+-+.|..|...-+ -++++|.+|++++..
T Consensus 65 I~~sL~~F~~~L~~ie~~r~~l~d~aq~s~~~~L~~F~Kedi~ 107 (207)
T cd07633 65 IAESFKEFAELLQEVEEERMMMVQNASDLLIKPLENFRKEQIG 107 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568889999999999999999999996 577899999999864
No 118
>KOG0521|consensus
Probab=82.71 E-value=29 Score=39.42 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Q psy17650 3 IEENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKK 66 (396)
Q Consensus 3 IEe~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~ 66 (396)
.+++|++.+..+..-..+.+-+.+++..|-.-+..++.+|..|...+ +.+..++..|.+.+.+.
T Consensus 57 ~~~~f~~~~~d~~~~~~~~~~~~~~l~~fs~~~~e~~~~~~~L~~q~~~~~~~~l~~f~k~dl~~ 121 (785)
T KOG0521|consen 57 ATEQFGKGLKDLFSLGQDEEVISETLQKFSKVLRELGTYHTELRSQLAHTLSLPLSQFVKGDLHE 121 (785)
T ss_pred HHHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 46778888888855442256667788888888999999999999999 57778999999987633
No 119
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=82.60 E-value=44 Score=31.57 Aligned_cols=61 Identities=3% Similarity=0.082 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
+..|+.+|..+.....+--.+..++..|-.-+..+...|..|.++++ -++.+|..|+++.-
T Consensus 39 ~~~F~~~L~~~~~~~~~d~~i~~~l~kF~~~l~el~~~~~~L~~q~~~~i~~pL~~F~k~dL 100 (200)
T cd07603 39 NSLFVNSLNDLSDYFRDDSLVQNCLNKFIQALQEMNNFHTILLDQAQRTVSTQLQNFVKEDI 100 (200)
T ss_pred HHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34555555555554333223568888888889999999999999996 56689999998875
No 120
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=81.69 E-value=50 Score=31.59 Aligned_cols=42 Identities=17% Similarity=0.285 Sum_probs=37.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 23 TFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 23 Tl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
.+..+...|-.-+..+.+.|..|....+ .++++|.+|++++-
T Consensus 64 ~i~~~L~kF~~~l~ei~~~r~~L~~q~~~~l~~pL~~F~k~dl 106 (207)
T cd07602 64 EIAESLKEFGRLIETVEDERDRMLENAEEQLIEPLEKFRKEQI 106 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999995 67789999999875
No 121
>cd07591 BAR_Rvs161p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 161 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 161 (Rvs161p) and Schizosaccharomyces pombe Hob3 (homolog of Bin3). S. cerevisiae Rvs161p plays a role in regulating cell polarity, actin cytoskeleton polarization, vesicle trafficking, endocytosis, bud formation, and the mating response. It forms a heterodimer with another BAR domain protein Rvs167p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. S. pombe Hob3 is important in regulating filamentous actin localization an
Probab=81.44 E-value=52 Score=31.58 Aligned_cols=42 Identities=26% Similarity=0.372 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHhh-ccCChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 98 YLQKCEELDKLRR-DNGSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 98 Y~~~CkE~E~lrk-e~~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
|...-..++++.. ....+..+.|++.++..|.+.|....+.+
T Consensus 125 YD~~~~k~~kl~~K~~kd~~kL~kae~el~~a~~~Ye~lN~~L 167 (224)
T cd07591 125 YDAARAKVRKLIDKPSEDPTKLPRAEKELDEAKEVYETLNDQL 167 (224)
T ss_pred HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333444432 22345678888888888888877777666
No 122
>KOG1924|consensus
Probab=80.10 E-value=44 Score=38.06 Aligned_cols=13 Identities=23% Similarity=0.332 Sum_probs=7.3
Q ss_pred CCChHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKT 33 (396)
Q Consensus 21 ~GTl~~sW~~lk~ 33 (396)
.--|++.-+.+..
T Consensus 286 veRF~piv~gl~~ 298 (1102)
T KOG1924|consen 286 VERFRPIVEGLDF 298 (1102)
T ss_pred hhhhhhHHHHHhc
Confidence 4555666665553
No 123
>cd07596 BAR_SNX The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=79.30 E-value=50 Score=30.04 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=23.9
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCC
Q psy17650 124 KVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLS 173 (396)
Q Consensus 124 K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~ 173 (396)
|..++.+.+...-..+..++.+|+.--......+..-+..+. ..++..+
T Consensus 146 ki~~l~~~i~~~e~~~~~~~~~~~~i~~~~~~El~~f~~~~~-~dlk~~l 194 (218)
T cd07596 146 KVEELEEELEEAESALEEARKRYEEISERLKEELKRFHEERA-RDLKAAL 194 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 455555566666666666666664333333333332222233 3566655
No 124
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=78.92 E-value=61 Score=30.84 Aligned_cols=59 Identities=7% Similarity=0.123 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 6 NNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 6 ~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
.++.+|..+.+-..+-....++...|-.-...+.+.|..|...++ -++++|.+|++++.
T Consensus 41 ~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L~~q~~~~l~~~L~~F~k~dl 100 (200)
T cd07638 41 QFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTILFDQAQRSIKAQLQTFVKEDL 100 (200)
T ss_pred HHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444442222224567888888888899999999999995 67789999999875
No 125
>cd07628 BAR_Atg24p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Atg24p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Atg24p is involved in membrane fusion events at the vacuolar surface during pexophagy. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=77.13 E-value=62 Score=30.00 Aligned_cols=57 Identities=23% Similarity=0.327 Sum_probs=37.9
Q ss_pred HHHHHHHHHHH---hCC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Q psy17650 7 NSKLFGKLAKQ---SGG--SGTFAPLWQVLKTSIEKIATVQVKMMQKVN----DLVKDVCKYTEEL 63 (396)
Q Consensus 7 YAKsL~KLAKk---a~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL~----EliK~l~~f~eeQ 63 (396)
|+..+..+++. |+. -|+|...+..|-.-++.++..+..++..+. +.+++...|....
T Consensus 37 l~~d~~efg~~~~~L~~~E~~~L~~~l~~~~~~~~~~s~~~~~l~~~~~~~f~~~Lkd~~~y~~s~ 102 (185)
T cd07628 37 LSVDYADLATQFQKLGSLESGEITEPFKIFSESLSQFSTSLRVLNKYTDENYLTSLKDLLHYILSL 102 (185)
T ss_pred HHHHHHHHHHHHHHHHhhCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444442 333 455999999999999999988888888762 4455555666554
No 126
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=77.00 E-value=75 Score=30.84 Aligned_cols=57 Identities=7% Similarity=0.175 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy17650 6 NNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEE 62 (396)
Q Consensus 6 ~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~ee 62 (396)
.-+..|.+-+...+.-..|..+...+-..-+++|....++...+ ..-+.+|..|.+.
T Consensus 73 ~Lg~~M~~~g~~lg~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~ 130 (229)
T cd07594 73 QLGQAMIEAGNDFGPGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEG 130 (229)
T ss_pred HHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666555554444567778888888888888888888888 5777888888773
No 127
>KOG2273|consensus
Probab=74.96 E-value=1.1e+02 Score=32.56 Aligned_cols=13 Identities=8% Similarity=0.187 Sum_probs=5.7
Q ss_pred HHHHHHHHHHhhc
Q psy17650 148 KRMSTSCKIRNDD 160 (396)
Q Consensus 148 ~~m~~~cq~Fqd~ 160 (396)
+.+...-+.|+..
T Consensus 452 ~~~~~e~~~f~~~ 464 (503)
T KOG2273|consen 452 ERIRAELERFEES 464 (503)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444455443
No 128
>KOG0979|consensus
Probab=74.46 E-value=1.8e+02 Score=34.08 Aligned_cols=18 Identities=28% Similarity=0.416 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17650 47 QKVNDLVKDVCKYTEELQ 64 (396)
Q Consensus 47 ~kL~EliK~l~~f~eeQk 64 (396)
+.+..+.++|+.|+++++
T Consensus 209 ~~~~~l~kdVE~~rer~~ 226 (1072)
T KOG0979|consen 209 DEIDKLEKDVERVRERER 226 (1072)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334455677888887765
No 129
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=74.45 E-value=40 Score=37.95 Aligned_cols=32 Identities=19% Similarity=0.174 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy17650 113 GSAKDLEKAELKVKKAQEDYKTIVDKYALIKE 144 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~ 144 (396)
.+..+.+.+..-+++-.+.....|.+...++.
T Consensus 682 L~~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 682 LSESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666667777777777777777777766654
No 130
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=74.40 E-value=94 Score=30.95 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=11.7
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
-..|-||++..+++ .|..|+++|
T Consensus 223 fmdEyEklE~EL~~---lY~~Y~~kf 245 (267)
T PF10234_consen 223 FMDEYEKLEEELQK---LYEIYVEKF 245 (267)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44455555555544 355555555
No 131
>KOG0977|consensus
Probab=73.39 E-value=1.5e+02 Score=32.54 Aligned_cols=43 Identities=23% Similarity=0.241 Sum_probs=21.3
Q ss_pred HHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 62 ELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEE 104 (396)
Q Consensus 62 eQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE 104 (396)
+....||.+.++.....+.+...|.....+.=.+..|.+.-+|
T Consensus 184 ~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e 226 (546)
T KOG0977|consen 184 ELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEE 226 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 3334455555444444445545555555555555555544444
No 132
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=73.27 E-value=91 Score=30.09 Aligned_cols=60 Identities=12% Similarity=0.176 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHhCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh
Q psy17650 7 NSKLFGKLAKQSGG----SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKK 66 (396)
Q Consensus 7 YAKsL~KLAKka~~----~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~ 66 (396)
-+|.|....|+--. -..+..+...|-.-+..+.++|..|...++ -++.+|.+|+++..+.
T Consensus 42 ~s~~l~~~~~~~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~dqaq~sl~~pL~~F~KeDl~~ 106 (215)
T cd07632 42 LSKQLLAYEKQNFALGKGDEEVISTLQYFAKVVDELNVLHSELAKQLADTMVLPIIQFREKDLTE 106 (215)
T ss_pred HHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35555555654211 345678888888999999999999999996 5678999999998643
No 133
>KOG2008|consensus
Probab=72.79 E-value=60 Score=33.22 Aligned_cols=68 Identities=15% Similarity=0.167 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 28 WQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEEL 105 (396)
Q Consensus 28 W~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~ 105 (396)
.-.++.|.|+|-..--++-..=.++.---++|++-|...-+++++. +| +.-+++.|+|--|+.+-+|-
T Consensus 12 l~~I~~eLEkLN~sTDdIN~~E~~Le~ar~~Fretqv~~t~kl~el-------~K---k~~k~I~ksrpf~elk~~er 79 (426)
T KOG2008|consen 12 LPRIQGELEKLNQSTDDINRRETELEDARQKFRETQVEATVKLDEL-------VK---KIGKAIEKSRPFWELKRVER 79 (426)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHHHhhcccHHHHHHHHH
Confidence 3345566666655443332221233334456888887777776543 33 34456788999998888873
No 134
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=72.53 E-value=88 Score=33.90 Aligned_cols=75 Identities=21% Similarity=0.356 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhhc----cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 82 QTIQSTTLVLQKAKDVYLQKCEEL----DKLRRD----NGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTS 153 (396)
Q Consensus 82 k~~q~~~~~l~KaKk~Y~~~CkE~----E~lrke----~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~ 153 (396)
..++.....+.+.++.|.....++ ++++++ .....+++.++.+.+++.+.|...-.++...|..+-....+.
T Consensus 304 ~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~ 383 (563)
T TIGR00634 304 NEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKR 383 (563)
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666777777776444443 222221 346678999999999999999999999988888876666655
Q ss_pred HHH
Q psy17650 154 CKI 156 (396)
Q Consensus 154 cq~ 156 (396)
+..
T Consensus 384 v~~ 386 (563)
T TIGR00634 384 VEQ 386 (563)
T ss_pred HHH
Confidence 533
No 135
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=72.28 E-value=75 Score=34.56 Aligned_cols=82 Identities=13% Similarity=0.220 Sum_probs=51.5
Q ss_pred ChHHHHHHHHHHHHH----HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHH
Q psy17650 23 TFAPLWQVLKTSIEK----IATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDV 97 (396)
Q Consensus 23 Tl~~sW~~lk~e~Ek----la~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~ 97 (396)
.+..-.+.++.++.. ++.++++-+..- .++.+.|....+...+- +.....+.++..+....+..+++.
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE-------~~A~~~vek~~~~l~~~l~~~~e~ 325 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE-------VKARKYVEKNSDTLPDFLEHAKEQ 325 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 456666777777766 888888776555 45555666544433211 111122335556677777888888
Q ss_pred HHHHHHHHHHHhhc
Q psy17650 98 YLQKCEELDKLRRD 111 (396)
Q Consensus 98 Y~~~CkE~E~lrke 111 (396)
......|++++...
T Consensus 326 ~~~l~~Ei~~l~~s 339 (569)
T PRK04778 326 NKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHc
Confidence 88888888888653
No 136
>KOG2273|consensus
Probab=71.99 E-value=1.4e+02 Score=31.70 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=8.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy17650 24 FAPLWQVLKTSIEKIATVQVK 44 (396)
Q Consensus 24 l~~sW~~lk~e~Ekla~~H~~ 44 (396)
+......+-...+.++.++.+
T Consensus 331 l~~~~~~~~~~~~~~~~~~e~ 351 (503)
T KOG2273|consen 331 LSEALSGLAKVIESLSKLLEK 351 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 137
>PF09325 Vps5: Vps5 C terminal like; InterPro: IPR015404 Vps5 is a sorting nexin that functions in membrane trafficking. This is the C-terminal dimerisation domain [].
Probab=71.22 E-value=90 Score=29.13 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHh
Q psy17650 94 AKDVYLQKCEELDKLR 109 (396)
Q Consensus 94 aKk~Y~~~CkE~E~lr 109 (396)
+-..|+....++++.+
T Consensus 133 ~~~~~~~a~~~l~kkk 148 (236)
T PF09325_consen 133 KLIEYQNAEKELQKKK 148 (236)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344555555554443
No 138
>smart00721 BAR BAR domain.
Probab=71.04 E-value=89 Score=28.99 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 26 PLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEE 104 (396)
Q Consensus 26 ~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE 104 (396)
.+.+.+-....+++.++.++ ..+ .+.+.++..+..... +.+++..+.+.+.+--|...--.
T Consensus 95 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~-----------------~~~~~~~kk~~~~~lDyD~~~~k 156 (239)
T smart00721 95 KALDKLGEALKKLLQVEESL-SQVKRTFILPLLNFLLGEF-----------------KEIKKARKKLERKLLDYDSARHK 156 (239)
T ss_pred HHHHHHHHHHHHHHhhHHHH-HHHHHHhhhhHHHHHHHHh-----------------HHHHHHHHHHHhHHHHHHHHHHH
Confidence 33444444445555656555 444 455666655443321 22233334455566666666666
Q ss_pred HHHHhhcc-CCh-hHHHHHHHHHHhHHHHHHHHH
Q psy17650 105 LDKLRRDN-GSA-KDLEKAELKVKKAQEDYKTIV 136 (396)
Q Consensus 105 ~E~lrke~-~s~-KeieKa~~K~kKA~e~Yk~~v 136 (396)
++.+++.. ... ..+.+++.+++.|.+.|..+.
T Consensus 157 l~~~~~~~~~~~~~kl~~~e~el~~ak~~fe~~~ 190 (239)
T smart00721 157 LKKAKKSKEKKKDEKLAKAEEELRKAKQEFEESN 190 (239)
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHHHH
Confidence 66665432 111 134444444444444444433
No 139
>KOG0250|consensus
Probab=70.15 E-value=1.9e+02 Score=34.18 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q psy17650 3 IEENNSKLFGKL 14 (396)
Q Consensus 3 IEe~YAKsL~KL 14 (396)
|.+.|..-+..+
T Consensus 212 i~~~~~~~~~~~ 223 (1074)
T KOG0250|consen 212 ITESYSEIMESL 223 (1074)
T ss_pred HHHHHHHHHHHH
Confidence 444554444444
No 140
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=69.99 E-value=1.3e+02 Score=30.41 Aligned_cols=80 Identities=20% Similarity=0.231 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 25 APLWQVLKTSIEKIATVQ---VKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQK 101 (396)
Q Consensus 25 ~~sW~~lk~e~Ekla~~H---~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~ 101 (396)
..++..+...+..+..-= ..|..+..|++.++.....+.....|+... ..+-....+.-......+|..++..
T Consensus 4 ~K~~~~l~q~l~~l~~~eeK~~~L~kk~~ell~e~k~~~k~~~~~~Kk~~~----l~kek~~l~~E~~k~~~~k~KLE~L 79 (309)
T PF09728_consen 4 KKAARQLMQSLNKLSSPEEKLEALCKKYAELLEEMKRLQKQLKKLQKKQEQ----LQKEKDQLQSELSKAILAKSKLESL 79 (309)
T ss_pred hhHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555544444311 123444455555555554444444444322 1112223344455566789999999
Q ss_pred HHHHHHH
Q psy17650 102 CEELDKL 108 (396)
Q Consensus 102 CkE~E~l 108 (396)
|+|+-+.
T Consensus 80 CRELQk~ 86 (309)
T PF09728_consen 80 CRELQKQ 86 (309)
T ss_pred HHHHHHH
Confidence 9998654
No 141
>KOG0995|consensus
Probab=69.79 E-value=1.8e+02 Score=32.01 Aligned_cols=81 Identities=23% Similarity=0.255 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh-----------hccCChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLR-----------RDNGSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMST 152 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lr-----------ke~~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~ 152 (396)
+...+.+..-+..-+.+=.|.|+++ +++.+.+|++++.....+-.++....-.+. .-....|+.+. +
T Consensus 290 ~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l-~ 368 (581)
T KOG0995|consen 290 QHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSELDRLSKEVWELKL-E 368 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-H
Confidence 3444444444444444444444443 256799999988776666555544443333 23344554443 2
Q ss_pred HHHHHhhccccchh
Q psy17650 153 SCKIRNDDRDHKIH 166 (396)
Q Consensus 153 ~cq~Fqd~E~~Ri~ 166 (396)
.-..|+..+-.+|+
T Consensus 369 ~~~~f~~le~~~~~ 382 (581)
T KOG0995|consen 369 IEDFFKELEKKFID 382 (581)
T ss_pred HHHHHHHHHHHHHH
Confidence 22344445544443
No 142
>cd07622 BAR_SNX4 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 4. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX4 is involved in recycling traffic from the sorting endosome (post-Golgi endosome) back to the late Golgi. It is also implicated in the regulation of plasma membrane receptor trafficking and interacts with receptors for EGF, insulin, platelet-derived growth factor and leptin. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and
Probab=68.51 E-value=1.1e+02 Score=28.97 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 132 YKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 132 Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
.+..+..|.+.+-+|-+++.+++..+
T Consensus 171 lk~~l~~~A~~qi~~~~~~~~~W~~~ 196 (201)
T cd07622 171 LKEILISYAKLQIKLAKKGLQTWTNI 196 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444433
No 143
>cd07625 BAR_Vps17p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps17p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp17p forms a dimer with Vps5p, the yeast counterpart of human SNX1, and is part of the retromer complex that mediates the transport of the carboxypeptidase Y receptor Vps10p from endosomes to Golgi. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.94 E-value=1.3e+02 Score=29.26 Aligned_cols=59 Identities=7% Similarity=0.084 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
+..+|+.|..|+..=. .+.|..+|..+-.-.+.++.+|..-+... -.+..+|..|...-
T Consensus 55 ~~dfg~~l~~Ls~~E~-~~~L~~a~~kLg~v~~~v~dl~~~QA~~d~~tl~d~L~~~~~~~ 114 (230)
T cd07625 55 EADFGQKLIQLSVEET-HHGLGNLYEKFGKVLTAVGDIDSIQATVDMATLYDGLEWISRDA 114 (230)
T ss_pred HHHHHHHHHHHhhhcc-cchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555533211 57889999999999999999999877666 45556666665543
No 144
>cd07597 BAR_SNX8 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 8. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. SNX8 and the yeast counterpart Mvp1p are involved in sorting and delivery of late-Golgi proteins, such as carboxypeptidase Y, to vacuoles. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=66.19 E-value=1.3e+02 Score=29.10 Aligned_cols=104 Identities=12% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYL 99 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~ 99 (396)
.|.+...+..+-...+.++....+-++.+ ..++++++.|++=.. .+|.+-+. .+ ......++.+.+.++
T Consensus 86 ~~~l~~~l~~~s~~~~~~s~~~~~~a~~~~~~vlE~Lk~~~d~l~-S~r~lf~R-------~~--k~~~~~i~~l~~ri~ 155 (246)
T cd07597 86 WGDINEGLSSLSKHFQLLSDLSEDEARAEEDGVLEKLKLQLDLLV-SLRDLFER-------HE--KLSLNNIQRLLKRIE 155 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH-HHHHHHHH-------HH--hcccccHHHHHHHHH
Confidence 48888889999999999999998888888 467788888877543 33333221 11 011223445666666
Q ss_pred HHHHHHHHHhhc-cCChhHHHHHHHHHHhHHHHHHH
Q psy17650 100 QKCEELDKLRRD-NGSAKDLEKAELKVKKAQEDYKT 134 (396)
Q Consensus 100 ~~CkE~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~ 134 (396)
..-..++.++.. ...+.|++|++....+-.++..+
T Consensus 156 ~~~~kl~~l~~~~~~~~~e~ekl~~~i~~d~~~i~~ 191 (246)
T cd07597 156 LNKKKLESLRAKPDVKGAEVDKLEASIIKDKESIAN 191 (246)
T ss_pred HHHHHHHHhhcCCCCchhHHHHHHHHHhccHHHHHH
Confidence 666666766654 46778999999888765554333
No 145
>PF06034 DUF919: Nucleopolyhedrovirus protein of unknown function (DUF919); InterPro: IPR009265 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf29. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several short baculovirus proteins of unknown function.
Probab=65.96 E-value=55 Score=25.57 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHH
Q psy17650 83 TIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIV 136 (396)
Q Consensus 83 ~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v 136 (396)
.+..++..+..+|+.+.-...=.|++.+-...++|+..++.++.+.+..|-.+.
T Consensus 5 ~L~~QLd~I~~~K~~l~ik~~H~Ekl~kitK~p~El~~i~~kl~~~R~~FLn~~ 58 (62)
T PF06034_consen 5 SLTQQLDEINQMKRQLTIKSQHWEKLKKITKNPKELQEIEKKLQELRQNFLNFG 58 (62)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677778888888888888889998877899999999999999888876653
No 146
>KOG0996|consensus
Probab=64.67 E-value=2.9e+02 Score=33.14 Aligned_cols=18 Identities=11% Similarity=0.126 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17650 91 LQKAKDVYLQKCEELDKL 108 (396)
Q Consensus 91 l~KaKk~Y~~~CkE~E~l 108 (396)
+.|+++.-+..-++.+.+
T Consensus 414 ~kKleke~ek~~~~~~e~ 431 (1293)
T KOG0996|consen 414 IKKLEKEIEKARRKKSEL 431 (1293)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 334444444444444333
No 147
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.54 E-value=1.4e+02 Score=28.37 Aligned_cols=54 Identities=7% Similarity=0.201 Sum_probs=39.0
Q ss_pred HHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 11 FGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 11 L~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
|..+..-..|-..+..+...|-.-...+...|..|..+++ -++++|.+|+++.-
T Consensus 46 l~d~~~~~~gd~~i~~~L~kF~~~l~ei~~~~~~l~~q~e~~l~~pL~~F~k~dL 100 (200)
T cd07637 46 IRDLSQQCKKDEMISECLDKFGDSLQEMVNYHMILFDQAQRSVRQQLHSFVKEDV 100 (200)
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3333333333334566777788888889999999999995 56689999998875
No 148
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.52 E-value=1.5e+02 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.273 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHH
Q psy17650 116 KDLEKAELKVKKAQEDYKTIVDKY-ALIKEDF 146 (396)
Q Consensus 116 KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~w 146 (396)
.-+.|++..+..|.++|......+ ++.-.-|
T Consensus 145 ~KL~kae~el~~Ak~~ye~~N~~L~~ELP~l~ 176 (225)
T cd07590 145 AKLEQAEKALAAARADFEKQNIKLLEELPKFY 176 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 556778888888888888877777 4444444
No 149
>KOG0994|consensus
Probab=63.27 E-value=2.8e+02 Score=33.44 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=14.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 126 KKAQEDYKTIVDKYALIKEDFEKRMS 151 (396)
Q Consensus 126 kKA~e~Yk~~v~kye~~r~~wE~~m~ 151 (396)
..|++..+..-++|+.+..--+++|.
T Consensus 1657 ~~a~q~~~~lq~~~~~~~~l~~~r~~ 1682 (1758)
T KOG0994|consen 1657 LSAEQGLEILQKYYELVDRLLEKRME 1682 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555666666666665
No 150
>cd07630 BAR_SNX_like The Bin/Amphiphysin/Rvs (BAR) domain of uncharacterized Sorting Nexins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of uncharacterized proteins with similarity to sorting nexins (SNXs), which are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=63.26 E-value=1.4e+02 Score=28.27 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHH
Q psy17650 94 AKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTI 135 (396)
Q Consensus 94 aKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~ 135 (396)
+=..|+..++.+++.+.. . .+.++.+.+.|.+.|..+
T Consensus 115 ~~~~~~~a~k~l~Kar~~---k--~~~ae~~~~~a~~~fe~i 151 (198)
T cd07630 115 KLIEFENASKALEKAKPQ---K--KEQAEEAKKKAETEFEEI 151 (198)
T ss_pred HHHHHHHHHHHHHHhHHh---h--HHHHHHHHHHHHHHHHHH
Confidence 344556666666655422 1 123555555555444443
No 151
>KOG0994|consensus
Probab=62.47 E-value=2.7e+02 Score=33.49 Aligned_cols=28 Identities=11% Similarity=0.124 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 83 TIQSTTLVLQKAKDVYLQKCEELDKLRR 110 (396)
Q Consensus 83 ~~q~~~~~l~KaKk~Y~~~CkE~E~lrk 110 (396)
.+......+++-|..|.+--.+.+.+.+
T Consensus 1620 ~~~eL~~~~e~lk~~~~qns~~A~~a~~ 1647 (1758)
T KOG0994|consen 1620 QLGELETRMEELKHKAAQNSAEAKQAEK 1647 (1758)
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 3344444455555555555555444433
No 152
>PRK04654 sec-independent translocase; Provisional
Probab=62.43 E-value=20 Score=34.42 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=23.8
Q ss_pred HHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHH
Q psy17650 9 KLFGKLAKQSGG-SGTFAPLWQVLKTSIEKIATV 41 (396)
Q Consensus 9 KsL~KLAKka~~-~GTl~~sW~~lk~e~Ekla~~ 41 (396)
+.|=++++..+. +|.|+..|..++.++++....
T Consensus 23 erLPe~aRtlGk~irk~R~~~~~vk~El~~El~~ 56 (214)
T PRK04654 23 ERLPKAARFAGLWVRRARMQWDSVKQELERELEA 56 (214)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 455666666666 778888888888888776554
No 153
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=61.68 E-value=1.8e+02 Score=29.24 Aligned_cols=17 Identities=12% Similarity=0.239 Sum_probs=8.5
Q ss_pred CChhHHHHHHHHHHhHH
Q psy17650 113 GSAKDLEKAELKVKKAQ 129 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~ 129 (396)
..+.+++.++..+....
T Consensus 206 ~D~~eL~~lr~eL~~~~ 222 (325)
T PF08317_consen 206 CDQEELEALRQELAEQK 222 (325)
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 34555555555544443
No 154
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=61.41 E-value=2.4e+02 Score=32.53 Aligned_cols=16 Identities=25% Similarity=0.607 Sum_probs=11.8
Q ss_pred cceEeeecceeecccchhh
Q psy17650 345 RCQVKMSGDMMLSFPAGIV 363 (396)
Q Consensus 345 ~c~v~~~g~~~~sfp~g~~ 363 (396)
+| |-..|++.- |.|++
T Consensus 640 ~~-vTldG~~~~--~~G~~ 655 (1164)
T TIGR02169 640 RM-VTLEGELFE--KSGAM 655 (1164)
T ss_pred cE-EEeCceeEc--CCcCc
Confidence 45 888899843 88877
No 155
>cd07594 BAR_Endophilin_B The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle.
Probab=61.25 E-value=1.6e+02 Score=28.51 Aligned_cols=76 Identities=11% Similarity=0.158 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh---hhhh-hhccCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy17650 35 IEKIATVQVKMMQKVN---DLVKDVCKYTEELQKK---HKLV-KEEQGPTLEIVQTIQ-STTLVLQKAKDVYLQKCEELD 106 (396)
Q Consensus 35 ~Ekla~~H~~La~kL~---EliK~l~~f~eeQkk~---hKk~-ke~~~~~~ea~k~~q-~~~~~l~KaKk~Y~~~CkE~E 106 (396)
+|.||.+=++.+..|. ..-+-|.+|++-+.+. +... -.....|.+-++... .-...++|+|+.-+.+-.+.|
T Consensus 71 ~e~Lg~~M~~~g~~lg~~S~~g~aL~~~g~a~~kia~~~~~~~~~i~~~fl~pL~~~l~~dik~i~k~RKkLe~rRLd~D 150 (229)
T cd07594 71 LEQLGQAMIEAGNDFGPGTAYGSALIKVGQAQKKLGQAEREFIQTSSSNFLQPLRNFLEGDMKTISKERKLLENKRLDLD 150 (229)
T ss_pred HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888888882 4557777887776433 1111 111223343333322 244567778888888777777
Q ss_pred HHhh
Q psy17650 107 KLRR 110 (396)
Q Consensus 107 ~lrk 110 (396)
..+.
T Consensus 151 ~~k~ 154 (229)
T cd07594 151 ACKT 154 (229)
T ss_pred HHHH
Confidence 6653
No 156
>KOG1086|consensus
Probab=60.55 E-value=68 Score=34.27 Aligned_cols=121 Identities=22% Similarity=0.217 Sum_probs=73.8
Q ss_pred HHHHHH--HHHHHHHHHHH-HHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------
Q psy17650 41 VQVKMM--QKVNDLVKDVC-KYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEEL------------ 105 (396)
Q Consensus 41 ~H~~La--~kL~EliK~l~-~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~------------ 105 (396)
+|.+++ +-|+|+||=|. +|....- --++|.. +.|..=.|+-......|-|+.|+..-+.-
T Consensus 80 fH~evgkfrFLNELIkvvsPKYlG~~t--SekvKtk---iIelLfsWtv~lpe~~KikdaYqmLKkqgIik~DP~lp~d~ 154 (594)
T KOG1086|consen 80 FHEEVGKFRFLNELIKVVSPKYLGSRT--SEKVKTK---IIELLFSWTVSLPEEPKIKDAYQMLKKQGIIKSDPKLPVDE 154 (594)
T ss_pred HHHHHHHHHHHHHHHHHhCchhcchhh--hHHHHHH---HHHHHhhheecCcccchHHHHHHHHHhcCcccCCCCCCCCC
Confidence 455553 33467777665 5654421 2233332 34555678888888889999998766531
Q ss_pred ------------------HHHh---h--ccCChhHHH---------------HHHH--HHHhHHHHHHHHHHHHHHHHHH
Q psy17650 106 ------------------DKLR---R--DNGSAKDLE---------------KAEL--KVKKAQEDYKTIVDKYALIKED 145 (396)
Q Consensus 106 ------------------E~lr---k--e~~s~Keie---------------Ka~~--K~kKA~e~Yk~~v~kye~~r~~ 145 (396)
|+.+ + .+..+.|++ |+++ |-.++.|+..+.|..+++|+.+
T Consensus 155 ~~~p~ppP~pkssvFddEEksklL~rLLkSn~PeDLqaANkLIK~lVkeee~k~eKiskR~~aleev~n~vk~l~em~l~ 234 (594)
T KOG1086|consen 155 TPVPAPPPRPKSSVFDDEEKSKLLARLLKSNHPEDLQAANKLIKTLVKEEEHKLEKISKRVKALEEVNNNVKLLEEMLLD 234 (594)
T ss_pred ccCCCCCCCCCccccCcHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1110 0 023344433 2222 2334667889999999999988
Q ss_pred H----------HHHHHHHHHHHhhccccchh
Q psy17650 146 F----------EKRMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 146 w----------E~~m~~~cq~Fqd~E~~Ri~ 166 (396)
| |..|.+-.++++.+++-.|.
T Consensus 235 ~s~eg~a~pd~E~~lq~v~~~ce~lr~tlfr 265 (594)
T KOG1086|consen 235 YSQEGNASPDNELLLQEVYNRCEQLRPTLFR 265 (594)
T ss_pred hccCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 8 45788888888888777776
No 157
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=59.77 E-value=9.3 Score=21.45 Aligned_cols=13 Identities=38% Similarity=0.552 Sum_probs=10.7
Q ss_pred hHHHHHHHHHHHH
Q psy17650 4 EENNSKLFGKLAK 16 (396)
Q Consensus 4 Ee~YAKsL~KLAK 16 (396)
||.|+|.+..||+
T Consensus 2 eee~~km~~~lar 14 (15)
T PF10550_consen 2 EEEVAKMAAELAR 14 (15)
T ss_dssp HHHHHHHHHHH-H
T ss_pred hHHHHHHHHHHhc
Confidence 7899999999886
No 158
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=59.51 E-value=1.5e+02 Score=30.33 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy17650 117 DLEKAELKVKKAQEDYKTIVDKYALIKED 145 (396)
Q Consensus 117 eieKa~~K~kKA~e~Yk~~v~kye~~r~~ 145 (396)
++||++.+.+.-..+|+..++.-+++..+
T Consensus 134 qLEk~~~q~~qLe~d~qs~lDEkeEl~~E 162 (319)
T PF09789_consen 134 QLEKLREQIEQLERDLQSLLDEKEELVTE 162 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777777777888887777666543
No 159
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=58.81 E-value=1.7e+02 Score=32.06 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhccCCCccceEeeecc
Q psy17650 327 AVAFHEIIHSYFRGTDETRCQVKMSGD 353 (396)
Q Consensus 327 a~a~~e~~~~~f~g~~~~~c~v~~~g~ 353 (396)
+-.++.+|+.-+++-+...-.+.+.|.
T Consensus 472 ~~~~~~~i~~~l~~i~~~~v~~~~~G~ 498 (555)
T TIGR03545 472 SFEATKYILQVLKKIDVLTVDADIKGI 498 (555)
T ss_pred ccHHHHHHHHHHhhCCeeEEEEeeccc
Confidence 356677788888887765555666664
No 160
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=58.57 E-value=1e+02 Score=32.63 Aligned_cols=80 Identities=19% Similarity=0.326 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----------HHHhhc----c--CChhHHHHHHHHHHhHHH---HHHHHHHHH-HHHHH
Q psy17650 86 STTLVLQKAKDVYLQKCEEL-----------DKLRRD----N--GSAKDLEKAELKVKKAQE---DYKTIVDKY-ALIKE 144 (396)
Q Consensus 86 ~~~~~l~KaKk~Y~~~CkE~-----------E~lrke----~--~s~KeieKa~~K~kKA~e---~Yk~~v~ky-e~~r~ 144 (396)
.....+.++|+.|...|..+ |.||++ + ..+++++-+...+..+.. ..+.++... ..-+.
T Consensus 199 ~~R~~~~~~k~~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~~~kp~WkK 278 (424)
T PF03915_consen 199 SNRAYMESGKKKLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIKTEKPIWKK 278 (424)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 33556667777777777654 445554 2 477888877776666654 455555555 34445
Q ss_pred HHHHHHHHHH--HHHhhccccch
Q psy17650 145 DFEKRMSTSC--KIRNDDRDHKI 165 (396)
Q Consensus 145 ~wE~~m~~~c--q~Fqd~E~~Ri 165 (396)
.||.++..-| |+|=.+.++.+
T Consensus 279 iWE~EL~~V~eEQqfL~~QedL~ 301 (424)
T PF03915_consen 279 IWESELQKVCEEQQFLKLQEDLL 301 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888 44433334443
No 161
>KOG4250|consensus
Probab=58.33 E-value=2.5e+02 Score=31.84 Aligned_cols=81 Identities=11% Similarity=0.097 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHH------HHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q psy17650 86 STTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQ------EDYKTIVDKYAL---IKEDFEKRMSTSCKI 156 (396)
Q Consensus 86 ~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~------e~Yk~~v~kye~---~r~~wE~~m~~~cq~ 156 (396)
.....++.+++.|.+.-+.-...+..+-+..++-|++.-...+. -.|..|+.+|.+ .-.+|-+.|.++-.+
T Consensus 554 ~l~~l~~~~~elyk~~~k~r~~~~~~~~n~e~~hkl~k~~~~~~~~~~~~s~~~~c~~k~~~~l~~~E~~~~~m~~~~n~ 633 (732)
T KOG4250|consen 554 QLESLLERARELYKQLKKRRAEVRELGYNDEQIHKLQKQKNLHAALSQLLSNLDECKQKISEFLPKLEKWFRLMKETRNH 633 (732)
T ss_pred HHHHHHHHHHHHHHHHHhchhhhhhcccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 33444567888887655443333333333333433332211111 124444444422 223566777766666
Q ss_pred Hhhccccchh
Q psy17650 157 RNDDRDHKIH 166 (396)
Q Consensus 157 Fqd~E~~Ri~ 166 (396)
.....+.|++
T Consensus 634 ~~~lq~~r~~ 643 (732)
T KOG4250|consen 634 VLQLQCSRFK 643 (732)
T ss_pred HHHHHhhHHH
Confidence 6554455554
No 162
>cd07635 BAR_GRAF2 The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase 2 (GRAF2), also called Rho GTPase activating protein 10 (ARHGAP10) or PS-GAP, is a GAP with activity towards Cdc42 and RhoA which regulates caspase-activated p21-activated protein kinase-2 (PAK-2p34). GRAF2 interacts with PAK-2p34, leading to its stabilization and decrease of cell death. It is highly expressed in skeletal muscle and also interacts with PKNbeta, which is a target of Rho. GRAF2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of the related prote
Probab=58.30 E-value=1.8e+02 Score=27.95 Aligned_cols=59 Identities=12% Similarity=0.134 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhCC------CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 6 NNSKLFGKLAKQSGG------SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 6 ~YAKsL~KLAKka~~------~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
.++.+|..+.....| .+.+..++..|-.-...+...|..|...++ .++.+|.+|++++.
T Consensus 41 ~Fa~~L~~f~~~~~gd~~~dde~~i~~sl~ef~~~~~el~d~r~~L~~~~~~~l~~pL~~F~kedl 106 (207)
T cd07635 41 KFAHSLRDFKFEFIGDAETDDERCIDASLQEFSNFLKNLEEQREIMALNVTETLIKPLERFRKEQL 106 (207)
T ss_pred HHHHHHHHHHhhcCCCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555544433 222357777777777788888888888885 57789999998875
No 163
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=56.95 E-value=72 Score=32.74 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy17650 25 APLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKE 72 (396)
Q Consensus 25 ~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke 72 (396)
..=|+.+..|-+++-+.|....++++|+.+-..+......+++|.+++
T Consensus 3 ~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ssI~~QkkrLk~ 50 (330)
T PF07851_consen 3 EEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCSSSISHQKKRLKE 50 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466999999999999999999999999888888888877777777654
No 164
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=56.80 E-value=1.7e+02 Score=27.38 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=16.0
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 115 AKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 115 ~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
...+.|++.+++.|.+.|......+
T Consensus 148 ~~kl~kae~~l~~a~~~y~~lN~~L 172 (216)
T cd07599 148 EKQLAKLERKLEEAKEEYEALNELL 172 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345567778888877766655554
No 165
>cd07686 F-BAR_Fer The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fer (Fes related) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fer (Fes related) is a cytoplasmic (or nonreceptor) tyrosine kinase expressed in a wide variety of tissues, and is found to reside in both the cytoplasm and the nucleus. It plays important roles in neuronal polarization and neurite development, cytoskeletal reorganization, cell migration, growth factor signaling, and the regulation of cell-cell interactions mediated by adherens junctions and focal adhesions. Fer kinase also regulates cell cycle progression in malignant cells. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membran
Probab=56.70 E-value=2e+02 Score=28.06 Aligned_cols=58 Identities=14% Similarity=0.105 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 90 VLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQE-DYKTIVDKYALIKEDFEKRMSTS 153 (396)
Q Consensus 90 ~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e-~Yk~~v~kye~~r~~wE~~m~~~ 153 (396)
...|+++.|...+.+...++++ -+-.+.. +.+-.+ =|...++.+=+.-+++++.|+..
T Consensus 159 ~~~Ka~~k~~~~~~km~~~kN~-----Yll~i~~-aN~~k~~Yy~~~lP~lLd~lQ~l~E~rv~~ 217 (234)
T cd07686 159 ETEKARERYDKATMKLHMLHNQ-----YVLAVKG-AQLHQHQYYDFTLPLLLDSLQKMQEEMIKA 217 (234)
T ss_pred chHHHHHHHHHHHHHHHhhhhH-----HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3589999999999998887754 1111111 011112 25556666655555555555543
No 166
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=56.55 E-value=2e+02 Score=28.15 Aligned_cols=183 Identities=16% Similarity=0.214 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHh----CC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 5 ENNSKLFGKLAKQS----GG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 5 e~YAKsL~KLAKka----~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
..|.++|.+|++-- +- .+......+.++.+.|.+-.--..+-..+.++-..+.....+..+.+++.+......
T Consensus 3 ~~~~~~L~~iq~lD~e~~rl~~~~~~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl 82 (239)
T COG1579 3 NNNLKSLLAIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL 82 (239)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777521 11 677888888888888877776666666666665666665555555555443221100
Q ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 78 LEIV---QTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSC 154 (396)
Q Consensus 78 ~ea~---k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~c 154 (396)
.++ +........++.+|+.-.+.-.++..+ .+++++++.+..-..+........+...+...+.++...=
T Consensus 83 -~~v~~~~e~~aL~~E~~~ak~r~~~le~el~~l------~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~ 155 (239)
T COG1579 83 -SAVKDERELRALNIEIQIAKERINSLEDELAEL------MEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIR 155 (239)
T ss_pred -hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 111122222233333333322222222 2344455555555555566666666777777777666555
Q ss_pred HHHhhccccchhhhhccCCCCCcchHhHHHHHHHhhcccccCCc
Q psy17650 155 KIRNDDRDHKIHVEIKPLSANTNQISASVDELRVTAGNLTLSPL 198 (396)
Q Consensus 155 q~Fqd~E~~Ri~v~ik~~~~~~~~~~as~eELr~sIeni~v~~~ 198 (396)
++-+.....+-+ +++.+ ++..-.-|++++..-.++-|-|+
T Consensus 156 e~~~~~~~~~~~--L~~~l--~~ell~~yeri~~~~kg~gvvpl 195 (239)
T COG1579 156 EEGQELSSKREE--LKEKL--DPELLSEYERIRKNKKGVGVVPL 195 (239)
T ss_pred HHHHHHHHHHHH--HHHhc--CHHHHHHHHHHHhcCCCceEEee
Confidence 554443322221 22222 22455678888888866666665
No 167
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=56.34 E-value=1.8e+02 Score=27.46 Aligned_cols=17 Identities=6% Similarity=0.403 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy17650 42 QVKMMQKVNDLVKDVCK 58 (396)
Q Consensus 42 H~~La~kL~EliK~l~~ 58 (396)
++++...|.+.+.++.+
T Consensus 25 NL~lIksLKeei~emkk 41 (201)
T PF13851_consen 25 NLELIKSLKEEIAEMKK 41 (201)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444433
No 168
>KOG0977|consensus
Probab=55.22 E-value=3.2e+02 Score=30.02 Aligned_cols=44 Identities=9% Similarity=0.225 Sum_probs=24.7
Q ss_pred HhCC-CCChHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 17 QSGG-SGTFAPLWQV----LKTSIEKIATVQVKMMQKVNDLVKDVCKYT 60 (396)
Q Consensus 17 ka~~-~GTl~~sW~~----lk~e~Ekla~~H~~La~kL~EliK~l~~f~ 60 (396)
.+++ .|.++..++. ++.-++..+..+..+-..+.-+..++..|+
T Consensus 78 ~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr 126 (546)
T KOG0977|consen 78 VVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELR 126 (546)
T ss_pred hccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444 6777777764 455566666677766555543333333333
No 169
>cd07614 BAR_Endophilin_A2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-A2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins are accessory proteins, localized at synapses, which interact with the endocytic proteins, dynamin and synaptojanin. They are essential for synaptic vesicle formation from the plasma membrane. They interact with voltage-gated calcium channels, thus linking vesicle endocytosis to calcium regulation. They also play roles in virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated
Probab=55.17 E-value=2.1e+02 Score=27.77 Aligned_cols=59 Identities=12% Similarity=0.161 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 5 ENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEEL 63 (396)
Q Consensus 5 e~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQ 63 (396)
+.-+..|++-....+.-..|..+...+-..-+++|....++...+ ..-+.+|..+.+.+
T Consensus 67 ~~Lg~~M~~~G~~lg~dS~~G~aL~~~G~a~~kia~~~~~~d~~i~~~fl~pL~~~le~d 126 (223)
T cd07614 67 GLLGETMIRYGKELGDESNFGDALLDAGESMKRLAEVKDSLDIEVKQNFIDPLQNLCDKD 126 (223)
T ss_pred hHHHHHHHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555444434477788888888889999998888888 57788888887543
No 170
>PF10455 BAR_2: Bin/amphiphysin/Rvs domain for vesicular trafficking; InterPro: IPR018859 Endocytosis and intracellular transport involve several mechanistic steps: (1) for the internalisation of cargo molecules, the membrane needs to bend to form a vesicular structure, which requires membrane curvature and a rearrangement of the cytoskeleton; (2) following its formation, the vesicle has to be pinched off the membrane; (3) the cargo has to be subsequently transported through the cell and the vesicle must fuse with the correct cellular compartment. Members of the Amphiphysin protein family are key regulators in the early steps of endocytosis, involved in the formation of clathrin-coated vesicles by promoting the assembly of a protein complex at the plasma membrane and directly assist in the induction of the high curvature of the membrane at the neck of the vesicle. Amphiphysins contain a characteristic domain, known as the BAR (Bin-Amphiphysin-Rvs)-domain, which is required for their in vivo function and their ability to tubulate membranes []. The crystal structure of these proteins suggest the domain forms a crescent-shaped dimer of a three-helix coiled coil with a characteristic set of conserved hydrophobic, aromatic and hydrophilic amino acids. Proteins containing this domain have been shown to homodimerise, heterodimerise or, in a few cases, interact with small GTPases. This entry identifies several fungal BAR domain proteins, such as Gvp36, that are not found by IPR004148 from INTERPRO [].
Probab=54.08 E-value=2.5e+02 Score=28.35 Aligned_cols=106 Identities=14% Similarity=0.198 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCC-----------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhc
Q psy17650 6 NNSKLFGKLAKQSGG-----------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEE 73 (396)
Q Consensus 6 ~YAKsL~KLAKka~~-----------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~ 73 (396)
+.+-.|++.|...+. ...|..++..+-..-+++|+..+++=+.| .+..+++...
T Consensus 121 Tl~~ALSraa~~ss~~l~~l~~~~~~~~~L~~aL~~~S~~~~~I~~aRL~qD~~I~~~Fn~~l~~~-------------- 186 (289)
T PF10455_consen 121 TLYHALSRAALTSSEILEELKSSDEDEDPLSKALLKYSSAYEKIAQARLEQDQLIQKEFNKKLQTT-------------- 186 (289)
T ss_pred cHHHHHHHHHHHhHHHHHhcccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 345566666655441 23455555555555555555555544444 2222233222
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--c-CChhHHHHHHHHHHhHHHHHHHH
Q psy17650 74 QGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD--N-GSAKDLEKAELKVKKAQEDYKTI 135 (396)
Q Consensus 74 ~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke--~-~s~KeieKa~~K~kKA~e~Yk~~ 135 (396)
+......++|+|+..+..-.++|-+|.. + ..+..-+.++..++++.|++-..
T Consensus 187 ----------Ln~~~~~a~k~RkkV~~sRL~~D~~R~~~k~~~~pekee~~r~~lE~aEDeFv~a 241 (289)
T PF10455_consen 187 ----------LNTDFKKANKARKKVENSRLQFDAARANLKNKAKPEKEEQLRVELEQAEDEFVSA 241 (289)
T ss_pred ----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccCHHHHHHHHHHHHHHHHH
Confidence 2333444556666666666666766643 1 22222234444555555443333
No 171
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=53.36 E-value=3.1e+02 Score=32.79 Aligned_cols=16 Identities=6% Similarity=-0.095 Sum_probs=9.3
Q ss_pred chhhHHHHHHHHhhhh
Q psy17650 323 TIPLAVAFHEIIHSYF 338 (396)
Q Consensus 323 ~~p~a~a~~e~~~~~f 338 (396)
-|+---+|.+-...|.
T Consensus 1044 ~w~~Lk~F~~~~~~w~ 1059 (1201)
T PF12128_consen 1044 FWKPLKQFSDEYELWR 1059 (1201)
T ss_pred cHHHHHHHHHHHHHHh
Confidence 4555566666555553
No 172
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=53.22 E-value=1.8e+02 Score=26.49 Aligned_cols=24 Identities=17% Similarity=0.156 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q psy17650 86 STTLVLQKAKDVYLQKCEELDKLR 109 (396)
Q Consensus 86 ~~~~~l~KaKk~Y~~~CkE~E~lr 109 (396)
.....+...+..|....++...++
T Consensus 127 ~~~~~l~~l~~~~~~~~~e~~~l~ 150 (191)
T PF04156_consen 127 SVEERLDSLDESIKELEKEIRELQ 150 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555544444
No 173
>cd07593 BAR_MUG137_fungi The Bin/Amphiphysin/Rvs (BAR) domain of Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This subfamily is composed predominantly of uncharacterized fungal proteins with similarity to Schizosaccharomyces pombe Meiotically Up-regulated Gene 137 protein (MUG137), which may play a role in meiosis and sporulation in fission yeast. MUG137 contains an N-terminal BAR domain and a C-terminal SH3 domain, similar to endophilins. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invol
Probab=52.59 E-value=2.2e+02 Score=27.33 Aligned_cols=22 Identities=9% Similarity=-0.049 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy17650 88 TLVLQKAKDVYLQKCEELDKLR 109 (396)
Q Consensus 88 ~~~l~KaKk~Y~~~CkE~E~lr 109 (396)
...++|+|+.-+.+-.+.|..+
T Consensus 113 ~k~i~k~RKkLe~rRLdyD~~k 134 (215)
T cd07593 113 MKEYHSARKKLESRRLAYDAAL 134 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445667777777766666554
No 174
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=52.08 E-value=2.3e+02 Score=27.41 Aligned_cols=112 Identities=12% Similarity=0.151 Sum_probs=51.2
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 22 GTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQK 101 (396)
Q Consensus 22 GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~ 101 (396)
|++..-...+...+-++=.++-+|+..=+...+.+..|.+....-- ..+++ +...++........+...+...-.-
T Consensus 12 ~~~~~~~~~~~~~~~~~~~a~~~ls~a~~~~~~~l~~~~~~~f~~~--~dDe~--i~~~L~kFs~~L~El~~~~~~L~~q 87 (215)
T cd07631 12 AAISNYFNQLFQAMHRIYDAQNELSAATHLTSKLLKEYEKQRFPLG--GDDEV--MSSTLQQFSKVIDELSSCHAVLSTQ 87 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcC--CCcHH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455545555555555555555544444444444444432111000 02221 4455555555555555544433332
Q ss_pred HHH-----HHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 102 CEE-----LDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 102 CkE-----~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
|.+ +++.+++.. +++.-++.+..|+.++|..++.+|
T Consensus 88 ~~~sl~~pL~~F~kedL--~~~Ke~KK~FdK~Se~~d~Al~K~ 128 (215)
T cd07631 88 LADAMMFPITQFKERDL--KEILTLKEVFQIASNDHDAAINRY 128 (215)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhhHHHHHHHHH
Confidence 221 223333211 223335556677777777777776
No 175
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=51.55 E-value=1.8e+02 Score=26.01 Aligned_cols=31 Identities=10% Similarity=0.217 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 129 QEDYKTIVDKYALIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 129 ~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd 159 (396)
.+.|-.-|..++.-+..||.++...-.++.+
T Consensus 110 ae~~eRkv~~le~~~~~~E~k~eel~~k~~~ 140 (143)
T PF12718_consen 110 AEHFERKVKALEQERDQWEEKYEELEEKYKE 140 (143)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3568888888888899999998877766643
No 176
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=50.42 E-value=2.4e+02 Score=27.23 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=33.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQK 93 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~K 93 (396)
+|-|.+.|++|+..+-.+- +++.|=.+-|..|..+....+.+.++.....+-.++.+...+.....
T Consensus 1 M~i~~r~~~~~~a~~~~~~-------dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~ 66 (225)
T COG1842 1 MGIFSRLKDLVKANINELL-------DKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQA 66 (225)
T ss_pred CchHHHHHHHHHHHHHHHH-------HhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999987665443 33333334444555555444555544433333333333333333333
No 177
>KOG0579|consensus
Probab=50.30 E-value=2.6e+02 Score=31.83 Aligned_cols=39 Identities=18% Similarity=0.269 Sum_probs=29.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 119 EKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 119 eKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
||+..-+++-....+..-++|..++..|.+..+..-..+
T Consensus 1116 EKchlLvEhEtqklKelde~h~~~~~~w~e~l~~rk~~l 1154 (1187)
T KOG0579|consen 1116 EKCHLLVEHETQKLKELDEKHHEMRELWQENLIARKTVL 1154 (1187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence 466666666667788889999999999988887544333
No 178
>PF15067 FAM124: FAM124 family
Probab=48.75 E-value=11 Score=36.70 Aligned_cols=67 Identities=31% Similarity=0.445 Sum_probs=47.5
Q ss_pred cchhhHHHHHHHHh---hhhccCCCccceEeee----cceeecc---cchhhhhhhCCCCCcceeEEeccccccccccCC
Q psy17650 322 DTIPLAVAFHEIIH---SYFRGTDETRCQVKMS----GDMMLSF---PAGIVSILTSNPSPAQLKFKVSNISHIENMLPN 391 (396)
Q Consensus 322 ~~~p~a~a~~e~~~---~~f~g~~~~~c~v~~~----g~~~~sf---p~g~~~~~~~~p~~~~l~f~~~~~~~~~~~~pn 391 (396)
|.+-=++.|-|.|. +..+- +.-|..-+- =|+.+|+ |.|....-+. -++|.|||.++..|-..|||
T Consensus 139 ~N~~d~vr~Yelil~~~~~~~k--~~FC~F~lys~~~~~iQlsLK~lp~~~~p~p~e---savLqF~V~~igqLvpLLPn 213 (236)
T PF15067_consen 139 DNYEDMVRFYELILQREPTQQK--EDFCFFTLYSQPGLDIQLSLKQLPPGMSPEPTE---SAVLQFRVEDIGQLVPLLPN 213 (236)
T ss_pred CCHHHHHHHHHHHhccCcceee--CCcEEEEEecCCCeEEEEEeccCCCCCCccccc---ceEEEEEecchhhhcccCCC
Confidence 56777888888875 22211 223654443 3677888 8887665444 45999999999999999999
Q ss_pred CC
Q psy17650 392 KQ 393 (396)
Q Consensus 392 ~~ 393 (396)
+.
T Consensus 214 pc 215 (236)
T PF15067_consen 214 PC 215 (236)
T ss_pred Cc
Confidence 85
No 179
>PRK04863 mukB cell division protein MukB; Provisional
Probab=48.33 E-value=5.4e+02 Score=31.79 Aligned_cols=39 Identities=13% Similarity=0.249 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 113 GSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMS 151 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~ 151 (396)
....||+.++.++++...+|..+-+..+.++..|..=|.
T Consensus 1085 ~re~EIe~L~kkL~~~~~e~~~~re~I~~aK~~W~~v~~ 1123 (1486)
T PRK04863 1085 FCEAEMDNLTKKLRKLERDYHEMREQVVNAKAGWCAVLR 1123 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999999999999999999999976665
No 180
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=47.81 E-value=4e+02 Score=28.90 Aligned_cols=70 Identities=20% Similarity=0.268 Sum_probs=40.6
Q ss_pred CCCh-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHH--------HHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHH
Q psy17650 21 SGTF-APLWQVLKTSIEKIATVQV-KMMQKVNDLV--------KDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLV 90 (396)
Q Consensus 21 ~GTl-~~sW~~lk~e~Ekla~~H~-~La~kL~Eli--------K~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~ 90 (396)
||+- ..-|+.+...-|+= ++|+ +.++.|...+ |.|.+....+...+|| .+.....
T Consensus 89 yss~rmk~W~~Iv~~yeK~-n~~L~E~a~~L~r~v~YeIP~lkKqi~k~~q~~~d~~kk--------------~~e~~~~ 153 (507)
T PF05600_consen 89 YSSQRMKDWQEIVKLYEKD-NLYLAEAAQILVRNVNYEIPALKKQIAKCQQQLEDLDKK--------------EEELQRS 153 (507)
T ss_pred ccchhHHHHHHHHHHHHhc-cchHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhH--------------HHHHHHH
Confidence 4444 66799888877763 3333 4555553322 3344443333333333 3344445
Q ss_pred HHHHHHHHHHHHHHH
Q psy17650 91 LQKAKDVYLQKCEEL 105 (396)
Q Consensus 91 l~KaKk~Y~~~CkE~ 105 (396)
...++..|...|+++
T Consensus 154 ~~~~~~~~~~~c~~l 168 (507)
T PF05600_consen 154 AAEARERYKKACKQL 168 (507)
T ss_pred HHHHHHHHHHHHHHh
Confidence 568899999999997
No 181
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=47.65 E-value=1.1e+02 Score=28.24 Aligned_cols=68 Identities=19% Similarity=0.356 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHHhHHHH---HHHHHHHH--HHHHHHHHHHHH
Q psy17650 84 IQSTTLVLQKAKDVYLQKCEELDKLRRD-NGSAKDLEKAELKVKKAQED---YKTIVDKY--ALIKEDFEKRMS 151 (396)
Q Consensus 84 ~q~~~~~l~KaKk~Y~~~CkE~E~lrke-~~s~KeieKa~~K~kKA~e~---Yk~~v~ky--e~~r~~wE~~m~ 151 (396)
+...+.-.+.+++-|+..-+|++.++.+ ...-+++++++.+.++|... -.....+| ++++.-||+...
T Consensus 15 K~qIf~I~E~~R~E~~~l~~EL~evk~~v~~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~~ 88 (159)
T PF05384_consen 15 KEQIFEIAEQARQEYERLRKELEEVKEEVSEVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAHE 88 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHH
Confidence 3445566678899999999999988765 34778888888888887653 34445555 566666654443
No 182
>cd07590 BAR_Bin3 The Bin/Amphiphysin/Rvs (BAR) domain of Bridging integrator 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Bridging integrator 3 (Bin3) is widely expressed in many tissues except in the brain. It plays roles in regulating filamentous actin localization and in cell division. In humans, the Bin3 gene is located in chromosome 8p21.3, a region that is implicated in cancer suppression. Homozygous inactivation of the Bin3 gene in mice led to the development of cataracts and an increased likelihood of lymphomas during aging, suggesting a role for Bin3 in lens development and cancer suppression. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=47.49 E-value=2.6e+02 Score=27.07 Aligned_cols=25 Identities=8% Similarity=0.109 Sum_probs=14.1
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 122 ELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 122 ~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
..|+.+|.+++..+-..|+.....-
T Consensus 144 ~~KL~kae~el~~Ak~~ye~~N~~L 168 (225)
T cd07590 144 LAKLEQAEKALAAARADFEKQNIKL 168 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666655555555544433
No 183
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=47.39 E-value=2.6e+02 Score=26.74 Aligned_cols=16 Identities=25% Similarity=0.420 Sum_probs=11.9
Q ss_pred CcchHhHHHHHHHhhc
Q psy17650 176 TNQISASVDELRVTAG 191 (396)
Q Consensus 176 ~~~~~as~eELr~sIe 191 (396)
+..+..+||+|..-++
T Consensus 191 n~ELtkICDeLI~k~~ 206 (207)
T PF05010_consen 191 NEELTKICDELISKMG 206 (207)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 4467788999887765
No 184
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=47.09 E-value=2.1e+02 Score=27.00 Aligned_cols=20 Identities=15% Similarity=0.182 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17650 33 TSIEKIATVQVKMMQKVNDL 52 (396)
Q Consensus 33 ~e~Ekla~~H~~La~kL~El 52 (396)
.+.|..|=-=.-+..+|+++
T Consensus 79 ~~LE~~GFnV~~l~~RL~kL 98 (190)
T PF05266_consen 79 SELEEHGFNVKFLRSRLNKL 98 (190)
T ss_pred HHHHHcCCccHHHHHHHHHH
Confidence 34444433333334444443
No 185
>KOG4403|consensus
Probab=46.84 E-value=3.4e+02 Score=29.17 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHhHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 115 AKDLEKAELKVKKAQE--------------------DYKTIVDKYALIKEDFEKRMSTSC 154 (396)
Q Consensus 115 ~KeieKa~~K~kKA~e--------------------~Yk~~v~kye~~r~~wE~~m~~~c 154 (396)
-||+|-++..++||.. .|..-+.-|+.-|++=|..|..+-
T Consensus 308 rkelE~lR~~L~kAEkele~nS~wsaP~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ak 367 (575)
T KOG4403|consen 308 RKELEQLRVALEKAEKELEANSSWSAPLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAK 367 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 3566666666666643 244445556777777777776443
No 186
>cd07654 F-BAR_FCHSD The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains proteins (FCHSD). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. This subfamily is composed of FCH and double SH3 domain (FCHSD) proteins, so named as they contain an N-terminal F-BAR domain and two SH3 domains at the C-terminus. Vertebrates harbor two subfamily members, FCHSD1 and FCHSD2, which have been characterized only in silico. Their biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=45.67 E-value=3.1e+02 Score=27.07 Aligned_cols=57 Identities=19% Similarity=0.141 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhCC--CCChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 5 ENNSKLFGKLAKQSGG--SGTFAPLWQ----VLKTSIEKIATVQVKMMQKVNDLVKDVCKYTE 61 (396)
Q Consensus 5 e~YAKsL~KLAKka~~--~GTl~~sW~----~lk~e~Ekla~~H~~La~kL~EliK~l~~f~e 61 (396)
+.+|+....+|-.... .+-+..... ..+.-.|-...+|.++-..++|+.+-...|.+
T Consensus 80 ~~~A~~~~~~ae~l~~~i~~~l~~l~~~~~~~~Kk~~e~~~~lq~el~~~~~eL~ksKK~Y~~ 142 (264)
T cd07654 80 DAVAQSRQNRCEAYRRYISEPAKTGRSAKEQQLKKCTEQLQRAQAEVQQTVRELSKSRKTYFE 142 (264)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3455555556554433 222322221 12223334444444444444455554455544
No 187
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=45.49 E-value=2e+02 Score=24.86 Aligned_cols=26 Identities=4% Similarity=0.313 Sum_probs=18.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 127 KAQEDYKTIVDKYALIKEDFEKRMST 152 (396)
Q Consensus 127 KA~e~Yk~~v~kye~~r~~wE~~m~~ 152 (396)
+-...++..+..|..++.+|.+++.+
T Consensus 92 ~L~~~f~~~m~~fq~~Q~~~~~~~k~ 117 (151)
T cd00179 92 GLSKKFVEVMTEFNKAQRKYRERYKE 117 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456788888888888888655543
No 188
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=45.27 E-value=2.2e+02 Score=25.16 Aligned_cols=21 Identities=10% Similarity=0.105 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17650 33 TSIEKIATVQVKMMQKVNDLV 53 (396)
Q Consensus 33 ~e~Ekla~~H~~La~kL~Eli 53 (396)
...++-...+-+|..++..+.
T Consensus 45 ~~~~r~~~~~e~l~~~~~~l~ 65 (151)
T PF11559_consen 45 QQRDRDMEQREDLSDKLRRLR 65 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555554444333
No 189
>KOG4466|consensus
Probab=45.17 E-value=2.1e+02 Score=28.74 Aligned_cols=39 Identities=10% Similarity=0.268 Sum_probs=20.1
Q ss_pred HhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhcc
Q psy17650 126 KKAQEDYKT-IVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKP 171 (396)
Q Consensus 126 kKA~e~Yk~-~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~ 171 (396)
+.|.+.|.. ++.-|+....++|++. ...|++|+.+.|-+
T Consensus 100 ~aAk~e~E~~~~lLke~l~seleeKk-------rkieeeR~smDlts 139 (291)
T KOG4466|consen 100 KAAKKEYESKKKLLKENLISELEEKK-------RKIEEERLSMDLTS 139 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhhhcc
Confidence 334444433 2444566777776553 23466676554443
No 190
>cd00160 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases; Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains.
Probab=45.05 E-value=1.4e+02 Score=26.16 Aligned_cols=51 Identities=16% Similarity=0.056 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHhCC----CC--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 3 IEENNSKLFGKLAKQSGG----SG--TFAPLWQVLKTSIEKIATVQVKMMQKVNDLV 53 (396)
Q Consensus 3 IEe~YAKsL~KLAKka~~----~G--Tl~~sW~~lk~e~Ekla~~H~~La~kL~Eli 53 (396)
-|+.|-+.|.-+.+.... .+ -...--+.+...++.+-.+|..+...|.+..
T Consensus 11 tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~~ 67 (181)
T cd00160 11 TERNYVRDLKLLVEVFLKPLDKELLPLSPEEVELLFGNIEEIYEFHRIFLKSLEERV 67 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 488899999888775433 22 2234455556667788888877766665443
No 191
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=44.97 E-value=2.3e+02 Score=25.92 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhCC-----CCChHHHHHHHHHHHHHHH
Q psy17650 6 NNSKLFGKLAKQSGG-----SGTFAPLWQVLKTSIEKIA 39 (396)
Q Consensus 6 ~YAKsL~KLAKka~~-----~GTl~~sW~~lk~e~Ekla 39 (396)
.|+..|..+..+.-. -|.+.++|..++.-++..+
T Consensus 38 ~~~~~l~~~~~~l~eeik~~n~~~~e~l~~~~~kl~et~ 76 (155)
T PF07464_consen 38 SVAQQLQNVSSSLQEEIKDANPEAEEALKQLKTKLEETA 76 (155)
T ss_dssp HHHHHHHHHHHHHHHHHTT-SSTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcChhHHHHHHHHHHHHHHHH
Confidence 456666666554322 6888888888887665543
No 192
>KOG0612|consensus
Probab=44.52 E-value=5.1e+02 Score=31.32 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=21.5
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMS 151 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~ 151 (396)
..+++.|++. .+++..++....++- .....|+.++.
T Consensus 642 ~~~~l~k~~e-l~r~~~e~~~~~ek~-~~e~~~e~~lk 677 (1317)
T KOG0612|consen 642 GKKELLKVEE-LKRENQERISDSEKE-ALEIKLERKLK 677 (1317)
T ss_pred hhhHHHHHHH-HHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 4556667777 777777766666664 44444544444
No 193
>cd07604 BAR_ASAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ASAPs (ArfGAP with SH3 domain, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) with similarity to ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins) in that they contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and ankyrin (ANK) repeats. However, ASAPs contain an additional C-terminal SH3 domain. ASAPs function in regulating cell growth, migration, and invasion. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3. ASAP1 and ASAP2 shows GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but is able to mediate
Probab=44.04 E-value=3e+02 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.099 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDD 160 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~ 160 (396)
...-+.++..|..|+..+-+.+-+.+..
T Consensus 148 ~e~~~~l~~~R~~F~~~~~~yv~~l~~l 175 (215)
T cd07604 148 AEIAEEMEKERRMFQLQMCEYLIKVNEI 175 (215)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888888888887777666553
No 194
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.72 E-value=6.4e+02 Score=30.18 Aligned_cols=26 Identities=8% Similarity=0.246 Sum_probs=13.0
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMM 46 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La 46 (396)
+-.+++-++.+-.....+..++.+|.
T Consensus 241 ~~~~r~~~~~l~~~~~~l~~~~~~L~ 266 (1201)
T PF12128_consen 241 FEKVRPEFDKLQQQYRQLQALEQQLC 266 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555544
No 195
>PLN03188 kinesin-12 family protein; Provisional
Probab=43.68 E-value=6.8e+02 Score=30.44 Aligned_cols=7 Identities=57% Similarity=0.453 Sum_probs=3.7
Q ss_pred chHHHHH
Q psy17650 76 PTLEIVQ 82 (396)
Q Consensus 76 ~~~ea~k 82 (396)
.|.||||
T Consensus 1191 dtaeav~ 1197 (1320)
T PLN03188 1191 DTAEAVQ 1197 (1320)
T ss_pred hHHHHHH
Confidence 3555555
No 196
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=42.96 E-value=4.6e+02 Score=28.31 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=22.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEEL 63 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQ 63 (396)
..+|+..-+.++.+++++=.-|..+-++.....-.|.....++
T Consensus 304 ~~~L~~~vesL~~ELe~~K~el~~lke~e~~a~~~v~~L~~eL 346 (522)
T PF05701_consen 304 ASSLRASVESLRSELEKEKEELERLKEREKEASSEVSSLEAEL 346 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHH
Confidence 4555555555566666655555555555543333344444433
No 197
>cd07616 BAR_Endophilin_B1 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B1, also called Bax-interacting factor 1 (Bif-1) or SH3GLB1 (SH3-domain GRB2-like endophilin B1), is localized mainly to the Golgi apparatus. It is involved in the regulation of many biological events including autophagy, tumorigenesis, nerve growth fact
Probab=42.49 E-value=3.3e+02 Score=26.48 Aligned_cols=77 Identities=10% Similarity=0.097 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh---hhhh-hhccCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy17650 34 SIEKIATVQVKMMQKVN---DLVKDVCKYTEELQKK---HKLV-KEEQGPTLEIVQTIQ-STTLVLQKAKDVYLQKCEEL 105 (396)
Q Consensus 34 e~Ekla~~H~~La~kL~---EliK~l~~f~eeQkk~---hKk~-ke~~~~~~ea~k~~q-~~~~~l~KaKk~Y~~~CkE~ 105 (396)
-.+-||.+=++-+..|. ++-+-|.+|++-+++. +-.+ .....+|.+-++.|. .-...++|+|+.-+.+-.+.
T Consensus 70 ~~~~Lg~~M~~~g~~~g~~S~~G~aL~~~g~a~~kia~~~~~~i~~~~~~Fl~PL~~~le~dik~i~k~RKkLe~rRLdy 149 (229)
T cd07616 70 NPELLGQYMIDAGNEFGPGTAYGNALIKCGETQKQIGTADRELIQTSAINFLTPLRNFIEGDYKTITKERKLLQNKRLDL 149 (229)
T ss_pred hHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777772 5667777888776533 1111 111123444444433 33556778888888888888
Q ss_pred HHHhh
Q psy17650 106 DKLRR 110 (396)
Q Consensus 106 E~lrk 110 (396)
|..+.
T Consensus 150 D~~K~ 154 (229)
T cd07616 150 DAAKT 154 (229)
T ss_pred HHHHH
Confidence 76653
No 198
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=42.49 E-value=4.2e+02 Score=29.36 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=16.1
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy17650 115 AKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEK 148 (396)
Q Consensus 115 ~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~ 148 (396)
..||+|.-.-.+--+.+......++.+.-..-++
T Consensus 504 k~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE 537 (594)
T PF05667_consen 504 KEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE 537 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 3455555544444444455555555444443333
No 199
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=42.02 E-value=1.7e+02 Score=32.03 Aligned_cols=74 Identities=14% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 83 TIQSTTLVLQKAKDVYLQKCEELDKLRRDN-GSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 83 ~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~-~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
.|......+. .|..+...-..++.++... .++.++.++...+++...+.++-..++.....+.+..-...-+.+
T Consensus 179 ~w~~~~~~Lp-~~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~ 253 (555)
T TIGR03545 179 KWKKRKKDLP-NKQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADL 253 (555)
T ss_pred HHHHHHHhcC-CchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444443 1333333333334443322 466666666666666666666666666666655554444333333
No 200
>cd07603 BAR_ACAPs The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of ACAPs (ArfGAP with Coiled-coil, ANK repeat and PH domain containing proteins), which are Arf GTPase activating proteins (GAPs) containing an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. Vertebrates contain at least three members, ACAP1, ACAP2, and ACAP3. ACAP1 and ACAP2 are Arf6-specific GAPs, involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration, by mediating Arf6 signaling. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=41.61 E-value=3.1e+02 Score=25.89 Aligned_cols=22 Identities=14% Similarity=0.247 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q psy17650 88 TLVLQKAKDVYLQKCEELDKLR 109 (396)
Q Consensus 88 ~~~l~KaKk~Y~~~CkE~E~lr 109 (396)
...+-.+|+.|+..-.+.|.+.
T Consensus 100 L~~vKE~kk~Fdk~s~~yd~al 121 (200)
T cd07603 100 IKKVKESKKHFEKISDDLDNAL 121 (200)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3444557777777777666653
No 201
>KOG1300|consensus
Probab=41.32 E-value=2.8e+02 Score=30.68 Aligned_cols=29 Identities=14% Similarity=0.192 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy17650 42 QVKMMQKVNDLVKDVCKYTEELQKKHKLVKE 72 (396)
Q Consensus 42 H~~La~kL~EliK~l~~f~eeQkk~hKk~ke 72 (396)
|+-++...+++-+.+++|.... ++...++
T Consensus 290 H~HIadvse~l~~~~k~f~~~n--k~~~~~~ 318 (593)
T KOG1300|consen 290 HKHIADVSERLTKKMKNFSSKN--KRLQTKS 318 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh--hhhhccc
Confidence 6666666666667777776653 3444433
No 202
>PF10266 Strumpellin: Hereditary spastic paraplegia protein strumpellin; InterPro: IPR019393 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. Strumpellin contains one known domain called a spectrin repeat that consists of three alpha-helices of a characteristic length wrapped in a left-handed coiled coil. The spectrin proteins have multiple copies of this repeat, which can then form multimers in the cell. Spectrin associates with the cell membrane via spectrin repeats in the ankyrin protein. The spectrin repeat is a structural platform for cytoskeletal protein assemblies. Two closely situated point mutations in human strumpellin lead to the condition of hereditary spastic paraplegia.
Probab=41.25 E-value=7e+02 Score=29.85 Aligned_cols=97 Identities=15% Similarity=0.166 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC--CC
Q psy17650 100 QKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKY-ALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--NT 176 (396)
Q Consensus 100 ~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~ky-e~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--~~ 176 (396)
.+|+.+-.+-..+.+..++=.+-...-+-+-.+++....+ +.=...|++...++|+..+++-+ .|. .-+++.. .+
T Consensus 367 ~~~~~~~~~v~~~~~~~~l~~LLL~taqlE~~lk~~~~~lL~~K~~~w~~~k~~~~~~m~eLa~-~Fs-g~~~L~~~~~n 444 (1081)
T PF10266_consen 367 KKSKQLRDLVIQKFSDDDLFQLLLNTAQLEFELKEMFKTLLEEKEERWEECKKEASERMQELAE-FFS-GTKPLTRIEKN 444 (1081)
T ss_pred chhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH-HhC-CCCcccccccc
Confidence 3444443333334566666555555555555566665555 66667899888888888887543 232 3344442 46
Q ss_pred cchHhHHHHHHHhhcccccCCc
Q psy17650 177 NQISASVDELRVTAGNLTLSPL 198 (396)
Q Consensus 177 ~~~~as~eELr~sIeni~v~~~ 198 (396)
.++.+-..+|...|+.++....
T Consensus 445 ~~L~~Wf~~~~~~i~~Ld~~~~ 466 (1081)
T PF10266_consen 445 ENLQQWFREMSKQIESLDYEDS 466 (1081)
T ss_pred hhHHHHHHHHHHHHHhcccccc
Confidence 6888888999999998888764
No 203
>cd07678 F-BAR_FCHSD1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of FCH and double SH3 domains 1 (FCHSD1). F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. FCH and double SH3 domains 1 (FCHSD1) contains an N-terminal F-BAR domain and two SH3 domains at the C-terminus. It has been characterized only in silico, and its biological function is still unknown. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane deformation in the form of long tubules.
Probab=41.19 E-value=3.7e+02 Score=26.68 Aligned_cols=34 Identities=29% Similarity=0.407 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 30 VLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEEL 63 (396)
Q Consensus 30 ~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQ 63 (396)
.+|...|....+|.+|..-++|+.+-...|....
T Consensus 110 ~~KK~~e~~~~lQ~eL~~~~keL~ksKK~Y~~~~ 143 (263)
T cd07678 110 VLKKSTEQLQKAQAELLETVKELSKSKKLYGQLE 143 (263)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555555443
No 204
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=40.85 E-value=5e+02 Score=29.61 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=6.0
Q ss_pred hhhCCCCCcceeEEe
Q psy17650 365 ILTSNPSPAQLKFKV 379 (396)
Q Consensus 365 ~~~~~p~~~~l~f~~ 379 (396)
.|..+| -|..|+.
T Consensus 743 ~L~~~~--~V~~f~~ 755 (771)
T TIGR01069 743 LLKNHP--KVKSFRD 755 (771)
T ss_pred HhcCCc--ceeeecc
Confidence 444443 3455554
No 205
>cd07631 BAR_APPL1 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. APPL1 interacts with diverse receptors (e.g. NGF receptor TrkA, FSHR, adiponectin receptors) and signaling proteins (e.g. Akt, PI3K), and may function as an adaptor linked to many distinct signaling pathways. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be invo
Probab=40.74 E-value=3.5e+02 Score=26.22 Aligned_cols=60 Identities=17% Similarity=0.316 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHh---CC-CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 5 ENNSKLFGKLAKQS---GG-SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 5 e~YAKsL~KLAKka---~~-~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
...||+|...-|+- ++ -.-+..+...|-.-+..+.++|..|...++ .++.+|.+|+++..
T Consensus 40 ~~~~~~l~~~~~~~f~~~~dDe~i~~~L~kFs~~L~El~~~~~~L~~q~~~sl~~pL~~F~kedL 104 (215)
T cd07631 40 HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDL 104 (215)
T ss_pred HHHHHHHHHHHHhcCCcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666542 22 223778888899999999999999999995 67789999999875
No 206
>KOG1162|consensus
Probab=40.51 E-value=4.6e+02 Score=29.32 Aligned_cols=115 Identities=13% Similarity=0.074 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Q psy17650 33 TSIEKIATVQVKMMQKVNDLVKDVCKYTEE-LQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR- 110 (396)
Q Consensus 33 ~e~Ekla~~H~~La~kL~EliK~l~~f~ee-Qkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk- 110 (396)
.-.|..++.+..+.+.|.++..+|++|-.+ -++-+|+. ..++++...+.+.|..-...|.-..+...
T Consensus 46 ~~~~~~~~~~~~Ff~~ld~el~Kvn~Fy~~k~~e~~~~~-----------~~L~~ql~~~~~~r~~~~~~~~~~~~~~~~ 114 (617)
T KOG1162|consen 46 MVSEEGGEFEEVFFRRLDEELNKVNKFYKEKVKEAREEA-----------EELNKQLDALIALRVKSRSSVDISDRAARL 114 (617)
T ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhhcccccccccccccchh
Confidence 345567788999999998888899986443 22222222 22344455544444331111111111100
Q ss_pred cc-CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 111 DN-GSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 111 e~-~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd 159 (396)
.+ -+. ++.|++.+++.|--+|.+.+--+...+.--.....+-+++|+.
T Consensus 115 ~~~f~~-~~~~~e~~lk~af~Efy~~L~llk~y~~lN~~~f~KI~KKyDK 163 (617)
T KOG1162|consen 115 RGKFTK-VLRKAEEKLKLAFSEFYLKLRLLKNYQFLNVTAFRKILKKYDK 163 (617)
T ss_pred hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 01 123 3888999999998887777666666665555666667777766
No 207
>PF05276 SH3BP5: SH3 domain-binding protein 5 (SH3BP5); InterPro: IPR007940 The SH3 domain-binding protein inhibits the auto and transphophorylation of BTK and acts as a negative regulator of BTK-related signalling in B cells.
Probab=40.31 E-value=2.7e+02 Score=27.28 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17650 84 IQSTTLVLQKAKDVYLQKCEELDKLR 109 (396)
Q Consensus 84 ~q~~~~~l~KaKk~Y~~~CkE~E~lr 109 (396)
.......|..+|..|...-+.+|.+-
T Consensus 193 v~~Le~~v~~aK~~Y~~ALrnLE~IS 218 (239)
T PF05276_consen 193 VEELEAKVKQAKSRYSEALRNLEQIS 218 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788899999999999998873
No 208
>PF08385 DHC_N1: Dynein heavy chain, N-terminal region 1; InterPro: IPR013594 Dynein heavy chains interact with other heavy chains to form dimers, and with intermediate chain-light chain complexes to form a basal cargo binding unit []. The region featured in this family includes the sequences implicated in mediating these interactions []. It is thought to be flexible and not to adopt a rigid conformation [].
Probab=39.82 E-value=2e+02 Score=30.48 Aligned_cols=19 Identities=16% Similarity=0.172 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHhhcccc
Q psy17650 145 DFEKRMSTSCKIRNDDRDH 163 (396)
Q Consensus 145 ~wE~~m~~~cq~Fqd~E~~ 163 (396)
.|+..+....+.+++.|.+
T Consensus 295 ~w~~~~~~f~~~i~~lE~~ 313 (579)
T PF08385_consen 295 EWERDFSEFRERIEDLERR 313 (579)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5655555555555554433
No 209
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=39.04 E-value=3.4e+02 Score=29.03 Aligned_cols=19 Identities=32% Similarity=0.296 Sum_probs=13.5
Q ss_pred HHHHHHhHHHHHHHHHHHH
Q psy17650 121 AELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 121 a~~K~kKA~e~Yk~~v~ky 139 (396)
+..|..|..|+|-.-+-|+
T Consensus 387 ~~aK~~k~EEEYas~~~kl 405 (446)
T PF07227_consen 387 ALAKSEKIEEEYASRYLKL 405 (446)
T ss_pred HHHhHHHHHHHHHHHHHhh
Confidence 4567778888887766665
No 210
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=39.03 E-value=3.9e+02 Score=26.25 Aligned_cols=48 Identities=15% Similarity=0.313 Sum_probs=31.2
Q ss_pred HhCC-CCChHHHHHHHHHHHHHHHHHHHHHHHHH-H---HHHHHHHHHHHHHH
Q psy17650 17 QSGG-SGTFAPLWQVLKTSIEKIATVQVKMMQKV-N---DLVKDVCKYTEELQ 64 (396)
Q Consensus 17 ka~~-~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~---EliK~l~~f~eeQk 64 (396)
.|++ ...|......|-..++..+....+|...+ . +.++++.-|.+..|
T Consensus 97 ~ws~lE~~l~~~L~~~a~~~~~~s~~l~~l~~~~~~~yl~~Lke~~~Y~~slk 149 (240)
T cd07667 97 TWSGLEGELAEPLEGVSACIGNCSTALEELTEDMTEDFLPVLREYILYSESMK 149 (240)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 4444 66777777777777777777777777666 2 34455556666543
No 211
>PRK05561 DNA topoisomerase IV subunit A; Validated
Probab=38.81 E-value=1.9e+02 Score=32.92 Aligned_cols=53 Identities=11% Similarity=0.043 Sum_probs=39.8
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhccccch
Q psy17650 113 GSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDF---EKRMSTSCKIRNDDRDHKI 165 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~w---E~~m~~~cq~Fqd~E~~Ri 165 (396)
.+.-|++|++..++...+++..+-.-++.-..-| .+++.+-.++|-+.|--.|
T Consensus 434 Lt~le~~kl~~E~~~l~~ei~~l~~iL~s~~~l~~~i~~eL~~ik~kfg~~RRT~I 489 (742)
T PRK05561 434 LAKLEEIEIRKEQDELRKEIAELEAILASERKLRKLIKKELKADAKKFGDPRRTPI 489 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCceee
Confidence 5777888888888888777777666665555555 7888888999988766555
No 212
>cd07618 BAR_Rich1 The Bin/Amphiphysin/Rvs (BAR) domain of RhoGAP interacting with CIP4 homologs protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. RhoGAP interacting with CIP4 homologs protein 1 (Rich1) is also called Neuron-associated developmentally-regulated protein (Nadrin) or Rho GTPase activating protein 17 (ARHGAP17). It is a Cdc42- and Rac-specific GAP that binds to polarity proteins through the scaffold protein angiomotin and plays a role in maintaining the integrity of tight junctions. It may be a component of a sorting mechanism in the recycling of tight junction transmembrane proteins. Rich1 contains an N-terminal BAR domain followed by a Rho GAP domain and a C-terminal proline-rich domain. It interacts with the BAR domain proteins endophilin and amphiphysin through its proline-rich region. The BAR domain of Rich1 forms oligomers and can bind membranes and induce membrane tubulation.
Probab=38.65 E-value=3.5e+02 Score=26.63 Aligned_cols=119 Identities=13% Similarity=0.126 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHH-H--HHHHHHHHHHHHHhhhh-hhhh---ccCchHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy17650 35 IEKIATVQVKMMQKVN-D--LVKDVCKYTEELQKKHK-LVKE---EQGPTLEIVQTIQST-TLVLQKAKDVYLQKCEELD 106 (396)
Q Consensus 35 ~Ekla~~H~~La~kL~-E--liK~l~~f~eeQkk~hK-k~ke---~~~~~~ea~k~~q~~-~~~l~KaKk~Y~~~CkE~E 106 (396)
.+-||.+=++-+..|. + +-+-|..|.+-+++.=. ++.. ....|.+-.+.+... ...+.|.|+.-+.+-.++|
T Consensus 59 ~~~Lgq~M~e~~~~lg~~s~~g~aL~~~gea~~kla~~~~~~d~~ie~~fl~PL~~~le~dlk~I~K~RkkLe~~RLD~D 138 (246)
T cd07618 59 LTALAQNMQEGSAQLGEESLIGKMLDTCGDAENKLAFELSQHEVLLEKDILDPLNQLAEVEIPNIQKQRKQLAKLVLDWD 138 (246)
T ss_pred HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHhhHH
Confidence 3445555555555552 1 23566677776643310 0000 012344333333222 3567788888888888887
Q ss_pred HHhhc--cC---ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 107 KLRRD--NG---SAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTS 153 (396)
Q Consensus 107 ~lrke--~~---s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~ 153 (396)
-.+.. ++ ++--......|..-..+++..+-.++|.++..|+..|...
T Consensus 139 ~~K~r~~~a~~~~~~~~~~~~~K~~~l~ee~e~a~~k~E~~kD~~~~dm~~~ 190 (246)
T cd07618 139 SARGRYNQAHKSSGTNFQAMPSKIDMLKEEMDEAGNKVEQCKDQLAADMYNF 190 (246)
T ss_pred HHHHHHHhccccCccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66542 10 0000111233444445666777777777777777777644
No 213
>KOG1962|consensus
Probab=38.59 E-value=2.7e+02 Score=27.01 Aligned_cols=13 Identities=8% Similarity=0.422 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q psy17650 49 VNDLVKDVCKYTE 61 (396)
Q Consensus 49 L~EliK~l~~f~e 61 (396)
+.-++..+..+++
T Consensus 116 ~~~ll~~l~~l~~ 128 (216)
T KOG1962|consen 116 LHTLLRELATLRA 128 (216)
T ss_pred HHHHHHHHHHHHh
Confidence 3444444444443
No 214
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=38.49 E-value=3.3e+02 Score=25.26 Aligned_cols=30 Identities=30% Similarity=0.544 Sum_probs=21.6
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy17650 115 AKDLEKAELKVKKAQEDYKTIVDKYALIKE 144 (396)
Q Consensus 115 ~KeieKa~~K~kKA~e~Yk~~v~kye~~r~ 144 (396)
.+++++++.+.....++|+..+.-.+.+|.
T Consensus 124 e~e~~~L~~~~~~~~eDY~~L~~Im~RARk 153 (161)
T TIGR02894 124 EKELEKLRQRLSTIEEDYQTLIDIMDRARK 153 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777888888888877775
No 215
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=38.34 E-value=3.6e+02 Score=25.97 Aligned_cols=98 Identities=9% Similarity=0.178 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--------hhcc
Q psy17650 93 KAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEK---RMSTSCKIR--------NDDR 161 (396)
Q Consensus 93 KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~---~m~~~cq~F--------qd~E 161 (396)
.....|.+.-++++.++.. .+++++.-...++-.++...-++..+.++..... .|.+.-+.| .++|
T Consensus 53 ~L~~e~~~l~~e~e~L~~~---~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v~~d~Pf~~~eR 129 (251)
T PF11932_consen 53 ELLAEYRQLEREIENLEVY---NEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQFVELDLPFLLEER 129 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHH
Confidence 3444555555555555432 1222222223333334444445555555554443 444444554 2345
Q ss_pred ccchhhhhccCCCCCcchHhHHHHHHHhhcccccC
Q psy17650 162 DHKIHVEIKPLSANTNQISASVDELRVTAGNLTLS 196 (396)
Q Consensus 162 ~~Ri~v~ik~~~~~~~~~~as~eELr~sIeni~v~ 196 (396)
.+|+. .++..++.. +-..-+.++.-++-..++
T Consensus 130 ~~Rl~-~L~~~l~~~--dv~~~ek~r~vlea~~~E 161 (251)
T PF11932_consen 130 QERLA-RLRAMLDDA--DVSLAEKFRRVLEAYQIE 161 (251)
T ss_pred HHHHH-HHHHhhhcc--CCCHHHHHHHHHHHHHHH
Confidence 66664 566666431 122234455555544444
No 216
>cd07636 BAR_GRAF The Bin/Amphiphysin/Rvs (BAR) domain of GTPase Regulator Associated with Focal adhesion kinase. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. GTPase Regulator Associated with Focal adhesion kinase (GRAF), also called Rho GTPase activating protein 26 (ARHGAP26), is a GAP with activity towards RhoA and Cdc42 and is only weakly active towards Rac1. It influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase (FAK), which is a critical component of integrin signaling. GRAF contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domain of GRAF directly interacts with its Rho GAP domain and inhibits its activity. Autoinhibited GRAF is capable o
Probab=38.14 E-value=3.7e+02 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 24 FAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 24 l~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
+..+...|-.-+..+.+.|..|....+ .++++|.+|++++.
T Consensus 65 I~~~L~kF~~~L~ei~~~r~~L~~qa~~~l~~~L~~F~kedi 106 (207)
T cd07636 65 IARSLQEFAAVLRNLEDERTRMIENASEVLITPLEKFRKEQI 106 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 558888888888899999999988884 67789999998875
No 217
>KOG0161|consensus
Probab=37.88 E-value=9.7e+02 Score=30.58 Aligned_cols=30 Identities=10% Similarity=0.152 Sum_probs=19.6
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVN 50 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~ 50 (396)
.-+|..-.+.++.+.|....-+..++..|+
T Consensus 1296 ~~~~~~qle~~k~qle~e~r~k~~l~~~l~ 1325 (1930)
T KOG0161|consen 1296 KQALESQLEELKRQLEEETREKSALENALR 1325 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566667777777777777776664
No 218
>cd07611 BAR_Amphiphysin_I_II The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysin I and II. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. The N-BAR domain of amphiphysin forms a curved dimer with a posit
Probab=37.64 E-value=3.8e+02 Score=25.78 Aligned_cols=25 Identities=24% Similarity=0.266 Sum_probs=16.7
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 115 AKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 115 ~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
.+-+-|++..++.|++.|......+
T Consensus 138 e~KL~kAe~el~~Ak~~ye~lN~~L 162 (211)
T cd07611 138 EGRIAKAEEEFQKAQKVFEEFNVDL 162 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567777888887766665555
No 219
>KOG0933|consensus
Probab=37.26 E-value=7.8e+02 Score=29.30 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=14.1
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVND 51 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~E 51 (396)
.-+|....+.+..++-+....--.....|+.
T Consensus 296 ~~~L~~~~~~~~~~~tr~~t~l~~~~~tl~~ 326 (1174)
T KOG0933|consen 296 VKALEDKLDSLQNEITREETSLNLKKETLNG 326 (1174)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3345555555555444444333333444433
No 220
>KOG2008|consensus
Probab=37.25 E-value=4.9e+02 Score=26.91 Aligned_cols=123 Identities=15% Similarity=0.252 Sum_probs=66.4
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHH--HHHH------HHHH-HHHHHHH-HHH-----hhhhhhhhccCchHHHH-HHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMM--QKVN------DLVK-DVCKYTE-ELQ-----KKHKLVKEEQGPTLEIV-QTI 84 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La--~kL~------EliK-~l~~f~e-eQk-----k~hKk~ke~~~~~~ea~-k~~ 84 (396)
.--|.++=.+|+..-|.++-.|..|. ++++ |++. .++...| ||- .-|+..-..+-..+.++ +..
T Consensus 89 a~~FeRat~vl~~AkeqVsl~~~sL~~~~~~~~~~~~~evlnh~~qrV~EaE~e~t~aE~~Has~a~~~l~l~~~~R~~e 168 (426)
T KOG2008|consen 89 AQDFERATEVLRAAKEQVSLAEQSLLEDDKRQFDSAWQEVLNHATQRVMEAEQEKTRAELVHASTAARYLALMGRMRQLE 168 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888888888888888776 3331 1111 1111111 110 01222111111112222 223
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
.+..-++.|+|=-|+.+-+---.+.. ..+-+.-++.++..+..+|+.+...+|.+-.+-
T Consensus 169 k~n~~AIkKSrpYfE~k~~~t~~le~---qk~tv~~Leaev~~~K~~Y~~slrnLE~ISd~I 227 (426)
T KOG2008|consen 169 KKNKRAIKKSRPYFELKAKYTVQLEQ---QKKTVDDLEAEVTLAKGEYKMSLRNLEMISDEI 227 (426)
T ss_pred HHhHHHHhhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 34445566676666554433222221 223455688899999999999999999988655
No 221
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=37.23 E-value=6.2e+02 Score=28.10 Aligned_cols=14 Identities=14% Similarity=0.238 Sum_probs=7.3
Q ss_pred ChhHHHHHHHHHHh
Q psy17650 114 SAKDLEKAELKVKK 127 (396)
Q Consensus 114 s~KeieKa~~K~kK 127 (396)
-+|||..+..|+.+
T Consensus 517 lQkeiN~l~gkL~R 530 (594)
T PF05667_consen 517 LQKEINSLTGKLDR 530 (594)
T ss_pred HHHHHHHHHHHHHh
Confidence 45555555555444
No 222
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=37.07 E-value=6.7e+02 Score=28.46 Aligned_cols=16 Identities=6% Similarity=0.084 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17650 27 LWQVLKTSIEKIATVQ 42 (396)
Q Consensus 27 sW~~lk~e~Ekla~~H 42 (396)
..+.|...++.+-+-|
T Consensus 537 ~l~lL~~a~~vlreeY 552 (717)
T PF10168_consen 537 CLELLSQATKVLREEY 552 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333334443333
No 223
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=37.06 E-value=3.5e+02 Score=27.88 Aligned_cols=14 Identities=0% Similarity=0.143 Sum_probs=8.0
Q ss_pred chHhHHHHHHHhhc
Q psy17650 178 QISASVDELRVTAG 191 (396)
Q Consensus 178 ~~~as~eELr~sIe 191 (396)
.+.+-|+.+|..+.
T Consensus 118 ~yKdEYEkFKl~~t 131 (330)
T PF07851_consen 118 KYKDEYEKFKLYLT 131 (330)
T ss_pred chhhhHHHHHHHHH
Confidence 44566666665444
No 224
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=36.76 E-value=3e+02 Score=24.40 Aligned_cols=21 Identities=14% Similarity=0.273 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy17650 88 TLVLQKAKDVYLQKCEELDKL 108 (396)
Q Consensus 88 ~~~l~KaKk~Y~~~CkE~E~l 108 (396)
...+.+-++.|...|-.++++
T Consensus 69 ~~~~~erqk~~~k~ae~L~kv 89 (131)
T PF10158_consen 69 LQQMVERQKRFAKFAEQLEKV 89 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444445555555444443
No 225
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=36.63 E-value=3e+02 Score=28.26 Aligned_cols=59 Identities=12% Similarity=0.061 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh---c-cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRR---D-NGSAKDLEKAELKVKKAQEDYKTIVDKYALIK 143 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrk---e-~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r 143 (396)
+.....+.+++..|...-++++|+++ + ..+..+++.++..++.|+..|...-..|+.++
T Consensus 106 ~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~ 168 (397)
T PRK15030 106 DSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVETAR 168 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666677777777777653 3 36899999988888777766666665555544
No 226
>KOG0933|consensus
Probab=36.45 E-value=8.1e+02 Score=29.21 Aligned_cols=7 Identities=14% Similarity=-0.358 Sum_probs=4.7
Q ss_pred ccCCCCC
Q psy17650 230 NHALMKT 236 (396)
Q Consensus 230 ~lf~~~~ 236 (396)
.|||.+.
T Consensus 944 ~~fgk~g 950 (1174)
T KOG0933|consen 944 RLFGKKG 950 (1174)
T ss_pred HhhcCCC
Confidence 4788763
No 227
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=36.34 E-value=6e+02 Score=27.68 Aligned_cols=38 Identities=11% Similarity=0.127 Sum_probs=17.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQV-KMMQKVNDLVKDVCK 58 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~-~La~kL~EliK~l~~ 58 (396)
.|--...++..+..=+.+...|+ ++-..|.|....+.+
T Consensus 59 ~Ges~~~f~~w~~~~~~i~~~~~~~ie~~l~~ae~~~~~ 97 (569)
T PRK04778 59 TGQSEEKFEEWRQKWDEIVTNSLPDIEEQLFEAEELNDK 97 (569)
T ss_pred CcccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhc
Confidence 45555555555555555544444 333334444444433
No 228
>KOG4643|consensus
Probab=36.25 E-value=8.1e+02 Score=29.18 Aligned_cols=26 Identities=23% Similarity=0.296 Sum_probs=14.6
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
..+|+..+..+..+-.+.|+.+-..|
T Consensus 500 r~~elsrl~a~~~elkeQ~kt~~~qy 525 (1195)
T KOG4643|consen 500 RDLELSRLHALKNELKEQYKTCDIQY 525 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555666665555
No 229
>PF11423 Repressor_Mnt: Regulatory protein Mnt; InterPro: IPR024421 Mnt is a repressor which is involved in the genetic switch between lysogenic and lytic growth in bacteriophage P22. The C-terminal domain of the protein consists of a dimer of two antiparallel coiled coils with a right handed twist, which is both stronger and has closer inter-helical separation compared with those found in left-handed coiled coils []. This entry is represented by Bacteriophage P22, Mnt. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 1QEY_C 1MNT_B.
Probab=36.06 E-value=66 Score=21.53 Aligned_cols=25 Identities=28% Similarity=0.496 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHH
Q psy17650 32 KTSIEKIATVQVKMMQKV-NDLVKDV 56 (396)
Q Consensus 32 k~e~Ekla~~H~~La~kL-~EliK~l 56 (396)
|.++|++|..|.++..+| =|-+|++
T Consensus 1 RDdAER~Ad~qse~vkk~VfetLK~~ 26 (30)
T PF11423_consen 1 RDDAERLADQQSEMVKKMVFETLKDM 26 (30)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357899999999988888 4655554
No 230
>TIGR01541 tape_meas_lam_C phage tail tape measure protein, lambda family. This model represents a relatively well-conserved region near the C-terminus of the tape measure protein of a lambda and related phage. This protein, which controls phage tail length, is typically about 1000 residues in length. Both low-complexity sequence and insertion/deletion events appear common in this family. Mutational studies suggest a ruler or template role in the determination of phage tail length. Similar behavior is attributed to proteins from distantly related or unrelated families in other phage.
Probab=35.80 E-value=5e+02 Score=26.57 Aligned_cols=76 Identities=7% Similarity=0.070 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc--cCCh----hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRRD--NGSA----KDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRN 158 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrke--~~s~----KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fq 158 (396)
+..+..+..-.+.|.+.-+++.+-... ..+. ++++.+...+.+..+..+.+..+....+.+|..=|......|.
T Consensus 82 ~~r~~~~~~i~~~~~~q~~~l~~~~~~~~~~s~~~y~~~~~~l~~~l~~~l~~~~~~y~~~d~~q~dw~~G~~~a~~~y~ 161 (332)
T TIGR01541 82 RERLDARLQIDRTFRKQQRDLNKAMTAKGLAGSDLYKEQLAAIKAALNEALAELHAYYAAEDALQGDWLAGARSGLADYG 161 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 345555556666777666665543211 1222 3344444455666666777777788889999988888888776
Q ss_pred hc
Q psy17650 159 DD 160 (396)
Q Consensus 159 d~ 160 (396)
|.
T Consensus 162 d~ 163 (332)
T TIGR01541 162 ET 163 (332)
T ss_pred HH
Confidence 63
No 231
>cd07598 BAR_FAM92 The Bin/Amphiphysin/Rvs (BAR) domain of Family with sequence similarity 92 (FAM92). BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of proteins from the family with sequence similarity 92 (FAM92), which were originally identified by the presence of the unknown domain DUF1208. This domain shows similarity to the BAR domains of sorting nexins. Mammals contain at least two member types, FAM92A and FAM92B, which may exist in many variants. The Xenopus homolog of FAM92A1, xVAP019, is essential for embryo survival and cell differentiation. FAM92A1 may be involved in regulating cell proliferation and apoptosis. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=35.78 E-value=4e+02 Score=25.44 Aligned_cols=40 Identities=15% Similarity=0.131 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHH---HHHHHHHHHHHHHH
Q psy17650 25 APLWQVLKTSIEKIATV-QVKMMQKVN---DLVKDVCKYTEELQ 64 (396)
Q Consensus 25 ~~sW~~lk~e~Ekla~~-H~~La~kL~---EliK~l~~f~eeQk 64 (396)
+..-+.|-..+..+|++ +..|.+.|. |.+..|..|+.+|-
T Consensus 38 ~~~~~~fak~~~~la~~E~~~L~~~L~~lae~~~~i~d~~q~qv 81 (211)
T cd07598 38 RDKGDELAKSINAYADTENPSLKQGLKNFAECLAALQDYRQAEV 81 (211)
T ss_pred HHhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333443333333333 345555553 55667777777664
No 232
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=35.70 E-value=3.2e+02 Score=27.24 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=10.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 124 KVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 124 K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
|++.....|-..|++-++.|.+.
T Consensus 239 KLe~gknaY~~~ieke~q~raeL 261 (311)
T PF04642_consen 239 KLEPGKNAYLAAIEKENQARAEL 261 (311)
T ss_pred hhcCCcchHHHHHhhHHHHHHHH
Confidence 33344444444444444444443
No 233
>cd07632 BAR_APPL2 The Bin/Amphiphysin/Rvs (BAR) domain of Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Adaptor protein, Phosphotyrosine interaction, PH domain and Leucine zipper containing (APPL) proteins are effectors of the small GTPase Rab5 that function in endosome-mediated signaling. They contain BAR, pleckstrin homology (PH) and phosphotyrosine binding (PTB) domains. They form homo- and hetero-oligomers that are mediated by their BAR domains. Vertebrates contain two APPL proteins, APPL1 and APPL2. Both APPL proteins interact with the transcriptional repressor Reptin, acting as activators of beta-catenin/TCF-mediated trancription. APPL2 is essential for cell proliferation. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interac
Probab=35.67 E-value=4.2e+02 Score=25.68 Aligned_cols=113 Identities=12% Similarity=0.178 Sum_probs=66.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQ 100 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~ 100 (396)
.|++..-...+...+-++-.+.-+|+..-+++-+-+..|-+. +=.+-....-+..+.+........+...+.....
T Consensus 11 ~~~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~s~~l~~~~~~----~~~~~~~D~~v~~sL~kFs~~L~el~~~h~~L~d 86 (215)
T cd07632 11 AGTLTDYTNQLLQAMQRVYGAQNEMCLATQQLSKQLLAYEKQ----NFALGKGDEEVISTLQYFAKVVDELNVLHSELAK 86 (215)
T ss_pred chhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh----cCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777778888888888888887777777777777777432 1121101112345666666666666666555555
Q ss_pred HHHH-----HHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 101 KCEE-----LDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 101 ~CkE-----~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
-|.+ ++..+++. -+++.-...++.|+.++|..++.+|
T Consensus 87 qaq~sl~~pL~~F~KeD--l~~vKe~KK~FdK~Se~~d~AL~Kn 128 (215)
T cd07632 87 QLADTMVLPIIQFREKD--LTEVSTLKDLFGIASNEHDLSMAKY 128 (215)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 5533 23333321 1222335556777777777777777
No 234
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=35.47 E-value=3.9e+02 Score=25.30 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=22.7
Q ss_pred ccCChhHHHH-------HHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 111 DNGSAKDLEK-------AELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 111 e~~s~KeieK-------a~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
..++.++|+. +-.++.+..+.|..+..+|+..+.+|
T Consensus 155 ~d~~~~~l~~ki~~iN~~y~~~~~~~~~fn~~t~~yN~~K~~~ 197 (204)
T PF10368_consen 155 KDTTQKQLDEKIKAINQSYKEVNKQKEKFNEYTKKYNEEKQDF 197 (204)
T ss_dssp TT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467777664 34455556667888888887777777
No 235
>cd07617 BAR_Endophilin_B2 The Bin/Amphiphysin/Rvs (BAR) domain of Endophilin-B2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilin-B2, also called SH3GLB2 (SH3-domain GRB2-like endophilin B2), is a cytoplasmic protein that interacts with the apoptosis inducer Bax. It is overexpressed in prostate cancer metastasis and has been identified
Probab=35.34 E-value=4.2e+02 Score=25.65 Aligned_cols=101 Identities=11% Similarity=0.123 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhh---hhhh-hhccCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q psy17650 34 SIEKIATVQVKMMQKVN---DLVKDVCKYTEELQKK---HKLV-KEEQGPTLEIVQTI-QSTTLVLQKAKDVYLQKCEEL 105 (396)
Q Consensus 34 e~Ekla~~H~~La~kL~---EliK~l~~f~eeQkk~---hKk~-ke~~~~~~ea~k~~-q~~~~~l~KaKk~Y~~~CkE~ 105 (396)
-.+.||.+=++.+..|. +.-+-|.+|++-+++. +... -+...+|.+-++.. ..-.+.++++|+.-+.+-.++
T Consensus 70 ~~~~Lg~~M~~~g~~~g~~s~~G~aL~~~g~a~~~ia~~~~~~~~~v~~~fl~pL~~~l~~dlk~i~k~RKkLe~rRLd~ 149 (220)
T cd07617 70 NAELLGQYMTEAANDFGPGTPYGKTLIKVGETQKRLGAAERDFIHTSSINFLTPLRNFLEGDWKTISKERRLLQNRRLDL 149 (220)
T ss_pred hHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777777777772 4556777777665433 1111 11122344444332 224557788888888888888
Q ss_pred HHHhhc-cCChhHHHHHHHHHHhHHHHHHH
Q psy17650 106 DKLRRD-NGSAKDLEKAELKVKKAQEDYKT 134 (396)
Q Consensus 106 E~lrke-~~s~KeieKa~~K~kKA~e~Yk~ 134 (396)
|..+.. ..+..|++.++.|+..+.|.++.
T Consensus 150 D~~K~r~~kae~elr~A~~kf~~~~E~a~~ 179 (220)
T cd07617 150 DACKARLKKAEHELRVAQTEFDRQAEVTRL 179 (220)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 876542 22334555555555554444333
No 236
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=35.10 E-value=3.2e+02 Score=27.76 Aligned_cols=58 Identities=17% Similarity=0.165 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh---c-cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy17650 86 STTLVLQKAKDVYLQKCEELDKLRR---D-NGSAKDLEKAELKVKKAQEDYKTIVDKYALIK 143 (396)
Q Consensus 86 ~~~~~l~KaKk~Y~~~CkE~E~lrk---e-~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r 143 (396)
.....+.+++..|...-++++|.+. . ..+.++++.++..++.++..|...-.+++.++
T Consensus 105 ~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~~a~a~~~~a~a~l~~a~ 166 (385)
T PRK09578 105 AAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADERQAKAAVASAKAELARAQ 166 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566677777777777776653 3 36889999888887777766665555554443
No 237
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=35.10 E-value=5.1e+02 Score=29.81 Aligned_cols=24 Identities=17% Similarity=0.221 Sum_probs=11.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHH
Q psy17650 120 KAELKVKKAQEDYKTIVDKYALIK 143 (396)
Q Consensus 120 Ka~~K~kKA~e~Yk~~v~kye~~r 143 (396)
++...+..|....+.+--+++.+.
T Consensus 498 rik~ev~eal~~~k~~q~kLe~se 521 (861)
T PF15254_consen 498 RIKIEVEEALVNVKSLQFKLEASE 521 (861)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Confidence 444445555555555555554444
No 238
>KOG1451|consensus
Probab=35.04 E-value=7e+02 Score=28.05 Aligned_cols=41 Identities=12% Similarity=0.298 Sum_probs=27.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 24 FAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 24 l~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
.+.++..|-.-+-.+-.-.|.|+..-. -+|++|++|++||.
T Consensus 83 ia~slkefa~ll~~ve~er~~~v~~Ase~li~PlekFRkEqI 124 (812)
T KOG1451|consen 83 IATSLKEFASLLNQVEDERMRMVGNASESLIEPLEKFRKEQI 124 (812)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhHHHHHHHHHh
Confidence 455666665555555555666665554 47799999999984
No 239
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=34.57 E-value=3.1e+02 Score=23.86 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=23.6
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17650 118 LEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDD 160 (396)
Q Consensus 118 ieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~ 160 (396)
+..++.....|.......-..++.-+..++.+..+.=.+++|+
T Consensus 75 ~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL 117 (132)
T PF07926_consen 75 INELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDL 117 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555666666666666555555553
No 240
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=34.55 E-value=2.9e+02 Score=25.36 Aligned_cols=34 Identities=9% Similarity=0.326 Sum_probs=21.9
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 113 GSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
...+|+++++.+++++..++...-++.+....+|
T Consensus 158 ~~~~ei~~lk~el~~~~~~~~~LkkQ~~~l~~ey 191 (192)
T PF05529_consen 158 KLSEEIEKLKKELEKKEKEIEALKKQSEGLQKEY 191 (192)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556677777777777777666666666555544
No 241
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=33.96 E-value=2.5e+02 Score=22.85 Aligned_cols=17 Identities=12% Similarity=0.403 Sum_probs=14.5
Q ss_pred hHHHHHHHHHHHHHHHH
Q psy17650 24 FAPLWQVLKTSIEKIAT 40 (396)
Q Consensus 24 l~~sW~~lk~e~Ekla~ 40 (396)
|...+|.+|.|.|.++.
T Consensus 2 l~elLd~ir~Ef~~~~~ 18 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQ 18 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45788999999999987
No 242
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=33.77 E-value=5.1e+02 Score=26.08 Aligned_cols=15 Identities=7% Similarity=0.293 Sum_probs=6.9
Q ss_pred HHHHHHhhccccchh
Q psy17650 152 TSCKIRNDDRDHKIH 166 (396)
Q Consensus 152 ~~cq~Fqd~E~~Ri~ 166 (396)
+.|+.|...|..+++
T Consensus 268 ~~~r~~t~~Ev~~Lk 282 (325)
T PF08317_consen 268 EECRGWTRSEVKRLK 282 (325)
T ss_pred HHhcCCCHHHHHHHH
Confidence 344444444444443
No 243
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=33.68 E-value=5.3e+02 Score=27.10 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 117 DLEKAELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 117 eieKa~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
+.+++..+.++..+..+..-+++..+..++
T Consensus 67 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 96 (425)
T PRK05431 67 DAEALIAEVKELKEEIKALEAELDELEAEL 96 (425)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555444444444444444
No 244
>KOG4674|consensus
Probab=33.17 E-value=1.1e+03 Score=29.86 Aligned_cols=146 Identities=11% Similarity=0.122 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhCC----CCChHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhhc---
Q psy17650 5 ENNSKLFGKLAKQSGG----SGTFAPLWQVLKTSIEKIATVQVKMMQKVN----DLVKDVCKYTEELQKKHKLVKEE--- 73 (396)
Q Consensus 5 e~YAKsL~KLAKka~~----~GTl~~sW~~lk~e~Ekla~~H~~La~kL~----EliK~l~~f~eeQkk~hKk~ke~--- 73 (396)
+-|-..+..|...... ++++....+.+.......-..|..+-+.+. ++.+.|.....+....++.....
T Consensus 287 eL~ks~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~ 366 (1822)
T KOG4674|consen 287 ELWKSKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGES 366 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhccc
Confidence 4455555555554432 677766666666666555555666555553 23344455544444444443221
Q ss_pred --cCc----hHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy17650 74 --QGP----TLEIV---QTIQSTTLVLQKAKDVYLQKCEELDKLRRDN-GSAKDLEKAELKVKKAQEDYKTIVDKYALIK 143 (396)
Q Consensus 74 --~~~----~~ea~---k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~-~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r 143 (396)
++. +++.+ ..+.+.|....+....|...|.++|++...- .--++++-...-++++...|......+..+-
T Consensus 367 ~~~s~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~ 446 (1822)
T KOG4674|consen 367 SMVSEKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELS 446 (1822)
T ss_pred chhhhHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111 11112 2456778888889999999999999986531 1112222222234444444444444444444
Q ss_pred HHHHHHH
Q psy17650 144 EDFEKRM 150 (396)
Q Consensus 144 ~~wE~~m 150 (396)
...+..+
T Consensus 447 ~el~~~~ 453 (1822)
T KOG4674|consen 447 EELDFSN 453 (1822)
T ss_pred HHHHHHH
Confidence 4443333
No 245
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=33.14 E-value=1.8e+02 Score=23.41 Aligned_cols=41 Identities=15% Similarity=0.302 Sum_probs=34.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTE 61 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~e 61 (396)
++.|.|..+.+......+-.....|...|..+...+..+.+
T Consensus 9 ~~~l~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~ 49 (92)
T PF14712_consen 9 LSLLEPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNE 49 (92)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888999999999999998888888888777777776665
No 246
>COG5283 Phage-related tail protein [Function unknown]
Probab=32.72 E-value=6.8e+02 Score=30.20 Aligned_cols=55 Identities=20% Similarity=0.304 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 49 VNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELD 106 (396)
Q Consensus 49 L~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E 106 (396)
|.+-|++..+|-.-.-++-|..++.++ ...-.++-....++|+|+.|+..-.|..
T Consensus 27 L~ssi~~~~~~~k~~e~q~k~t~~~ls---~s~~k~~~l~eameK~k~~~~~~kqe~~ 81 (1213)
T COG5283 27 LKSSIKDSTQFWKMLEKQQKLTKDGLS---ASKGKYEGLSEAMEKQKKAYEDLKQEVK 81 (1213)
T ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666654444344455544322 1122234555666777777766655543
No 247
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=32.06 E-value=3e+02 Score=24.07 Aligned_cols=27 Identities=15% Similarity=0.206 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 82 QTIQSTTLVLQKAKDVYLQKCEELDKL 108 (396)
Q Consensus 82 k~~q~~~~~l~KaKk~Y~~~CkE~E~l 108 (396)
+...+....+.+....|....-.++.+
T Consensus 44 ~~~lk~~k~~~k~~~~~~~~~~~l~~~ 70 (171)
T PF03357_consen 44 KIYLKRKKRLEKQLEKLLNQLSNLESV 70 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555555555555544
No 248
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=32.03 E-value=4.7e+02 Score=25.12 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q psy17650 135 IVDKYALIKEDFE 147 (396)
Q Consensus 135 ~v~kye~~r~~wE 147 (396)
...+.+.+..+|-
T Consensus 170 ~~~K~~~A~~~Y~ 182 (234)
T cd07652 170 LLRKVQAADQDYA 182 (234)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444555553
No 249
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=31.92 E-value=3.8e+02 Score=28.08 Aligned_cols=39 Identities=15% Similarity=0.312 Sum_probs=28.5
Q ss_pred cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 112 NGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRM 150 (396)
Q Consensus 112 ~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m 150 (396)
..+..+++|+....++..+++..+-.....+..-|.+++
T Consensus 387 ~LT~~e~~kL~~e~~~l~~ei~~l~~~~~~~~~l~~~dL 425 (426)
T PF00521_consen 387 RLTKEEIEKLQKEIKELEKEIEELEKILPKIKDLWKKDL 425 (426)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 468888889888888877776666666655777776654
No 250
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=31.38 E-value=3e+02 Score=22.73 Aligned_cols=76 Identities=20% Similarity=0.252 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHH
Q psy17650 53 VKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDY 132 (396)
Q Consensus 53 iK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Y 132 (396)
......|.+.+++. ......++.+.+.-+.|......++..+.......+++-.+.+.+ .+.+.+..+.+...+..
T Consensus 8 r~n~e~v~~~l~~R-~~~~~~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~---~~~~~l~~e~~~lk~~i 83 (108)
T PF02403_consen 8 RENPEEVRENLKKR-GGDEEDVDEIIELDQERRELQQELEELRAERNELSKEIGKLKKAG---EDAEELKAEVKELKEEI 83 (108)
T ss_dssp HHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTT---CCTHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHc-CCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCc---ccHHHHHHHHHHHHHHH
Confidence 34556666666532 233334455556666666666667777777777777766665544 34444444444433333
No 251
>PF03792 PBC: PBC domain; InterPro: IPR005542 Pbx proteins are members of the TALE (three-amino-acid loop extension) family of atypical homeodomain proteins, whose members are characterised by a three-residue insertion in the first helix of the homeodomain involved in their interaction with Hox proteins. Examination of Pbx1 has shown that, in addition to the homeodomain, a short 16-residue C-terminal tail is essential for maximal cooperative interactions with Hox partners as well as for maximal monomeric binding of Pbx1 to DNA. The PBX domain is a bipartite acidic domain [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=30.93 E-value=4.3e+02 Score=25.16 Aligned_cols=45 Identities=29% Similarity=0.386 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHH-----Hhhc----cCChhHHHHHHH----HHHhHHHHHHHH
Q psy17650 91 LQKAKDVYLQKCEELDK-----LRRD----NGSAKDLEKAEL----KVKKAQEDYKTI 135 (396)
Q Consensus 91 l~KaKk~Y~~~CkE~E~-----lrke----~~s~KeieKa~~----K~kKA~e~Yk~~ 135 (396)
.+.--+.|++.|.|... |+.+ ..++||+|++.. |..+.....+++
T Consensus 120 y~~el~kye~ac~eF~~hV~~lLreQs~~RPIs~keiE~m~~~i~~Kf~~iq~qLKQs 177 (191)
T PF03792_consen 120 YHSELEKYEQACNEFTEHVMNLLREQSEFRPISPKEIERMVNIIHRKFSKIQMQLKQS 177 (191)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455678888888754 3333 379999998654 555555444443
No 252
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=30.74 E-value=5.8e+02 Score=25.84 Aligned_cols=49 Identities=27% Similarity=0.271 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhc-----cCChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 91 LQKAKDVYLQKCEELDKLRRD-----NGSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 91 l~KaKk~Y~~~CkE~E~lrke-----~~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
+.+.++.|...-.|++.++.. ...+.++.+++.++++...+......++
T Consensus 174 ~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 174 KPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555431 2456666666666655554433333333
No 253
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=30.70 E-value=4.6e+02 Score=29.78 Aligned_cols=54 Identities=11% Similarity=0.113 Sum_probs=40.2
Q ss_pred cCChhHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q psy17650 112 NGSAKDLEKAELKVKKAQED---YKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKI 165 (396)
Q Consensus 112 ~~s~KeieKa~~K~kKA~e~---Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri 165 (396)
..+.-|++|++..++...++ |+..+..-......|.+++.+-.++|-+.|.-.|
T Consensus 423 ~lt~~e~~kl~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~kfg~~RRT~I 479 (738)
T TIGR01061 423 RLTNTDIFELKEEQNELEKKIISLEQIIASEKARNKLLKKQLEEYKKQFAQQRRSQI 479 (738)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCceee
Confidence 35777888888877666654 4444444488888999999999999998765555
No 254
>cd07609 BAR_SIP3_fungi The Bin/Amphiphysin/Rvs (BAR) domain of fungal Snf1p-interacting protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. This group is composed of mostly uncharacterized fungal proteins with similarity to Saccharomyces cerevisiae Snf1p-interacting protein 3 (SIP3). These proteins contain an N-terminal BAR domain followed by a Pleckstrin Homology (PH) domain. SIP3 interacts with SNF1 protein kinase and activates transcription when anchored to DNA. It may function in the SNF1 pathway. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=30.49 E-value=2.6e+02 Score=26.80 Aligned_cols=27 Identities=0% Similarity=0.074 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhh
Q psy17650 40 TVQVKMMQKVND-LVKDVCKYTEELQKK 66 (396)
Q Consensus 40 ~~H~~La~kL~E-liK~l~~f~eeQkk~ 66 (396)
...++.++.... ++++|..|..+.-+.
T Consensus 77 ~~ll~~~~~~~~~~~~pL~~f~k~~i~~ 104 (214)
T cd07609 77 GGVLSALKGNDSLILDPLRSFVKSDIRP 104 (214)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 333344444433 556777777766543
No 255
>KOG2077|consensus
Probab=30.34 E-value=4.3e+02 Score=29.48 Aligned_cols=81 Identities=15% Similarity=0.236 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCchHHHHHHHHHHHHHHHH-----HHHHH
Q psy17650 25 APLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEE-QGPTLEIVQTIQSTTLVLQK-----AKDVY 98 (396)
Q Consensus 25 ~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~-~~~~~ea~k~~q~~~~~l~K-----aKk~Y 98 (396)
.-==++++.|.|..-.....|-.++.|+.++|++.+.+.-..|.+.++. .+.+==|+ .+.+..++- -|-.|
T Consensus 335 ~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~~~~e~ddiPmAq---RkRFTRvEMaRVLMeRNqY 411 (832)
T KOG2077|consen 335 TCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKAKDDEDDDIPMAQ---RKRFTRVEMARVLMERNQY 411 (832)
T ss_pred ccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHH---HhhhHHHHHHHHHHHHhHH
Confidence 3344678888888877777787888777777777766665555554333 33332233 233333333 35567
Q ss_pred HHHHHHHHHH
Q psy17650 99 LQKCEELDKL 108 (396)
Q Consensus 99 ~~~CkE~E~l 108 (396)
..+-.|++.+
T Consensus 412 KErLMELqEa 421 (832)
T KOG2077|consen 412 KERLMELQEA 421 (832)
T ss_pred HHHHHHHHHH
Confidence 7777776543
No 256
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=30.29 E-value=7.5e+02 Score=26.96 Aligned_cols=47 Identities=15% Similarity=0.274 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh-ccCChhHHHHHHHHHHhHHHH
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRR-DNGSAKDLEKAELKVKKAQED 131 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrk-e~~s~KeieKa~~K~kKA~e~ 131 (396)
......+.........--.+++.+.. +..+..+++.+..+++.....
T Consensus 104 ~~~~~~l~~~e~~i~~i~~~l~~L~~~e~~nr~~i~~l~~~y~~lrk~ 151 (560)
T PF06160_consen 104 KEIEEQLDEIEEDIKEILDELDELLESEEKNREEIEELKEKYRELRKE 151 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444432 223444445555555444443
No 257
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=30.25 E-value=5.2e+02 Score=25.11 Aligned_cols=18 Identities=0% Similarity=0.091 Sum_probs=12.2
Q ss_pred HHHHHHHHHhhccccchh
Q psy17650 149 RMSTSCKIRNDDRDHKIH 166 (396)
Q Consensus 149 ~m~~~cq~Fqd~E~~Ri~ 166 (396)
.+.++-..||.+..+-|+
T Consensus 164 ~Lee~i~~FEkqKl~DlK 181 (219)
T PF06730_consen 164 QLEETIDNFEKQKLKDLK 181 (219)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345666788887766665
No 258
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=30.20 E-value=2.9e+02 Score=28.03 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=27.2
Q ss_pred ChhhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 1 ANIEENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVN 50 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~ 50 (396)
+.+||.|-|.|+--|.-=.---+|.==-|.++..+|.+-+.+.++-..+.
T Consensus 87 ~evEekyrkAMv~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 87 AEVEEKYRKAMVSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999888753211222333334455555555555555444443
No 259
>PHA02562 46 endonuclease subunit; Provisional
Probab=29.87 E-value=6.9e+02 Score=26.46 Aligned_cols=8 Identities=13% Similarity=-0.043 Sum_probs=4.1
Q ss_pred ceEeeecc
Q psy17650 346 CQVKMSGD 353 (396)
Q Consensus 346 c~v~~~g~ 353 (396)
|++=||-+
T Consensus 529 ~iiiish~ 536 (562)
T PHA02562 529 NVFVISHK 536 (562)
T ss_pred eEEEEECc
Confidence 44545555
No 260
>KOG0978|consensus
Probab=29.84 E-value=8.7e+02 Score=27.60 Aligned_cols=187 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHH
Q psy17650 4 EENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQT 83 (396)
Q Consensus 4 Ee~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~ 83 (396)
++.|=|.|....+.---+-+|+...+++..++-.+...--.+-.++..+.+.+......-...-+..+-.......--+.
T Consensus 481 dd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~ 560 (698)
T KOG0978|consen 481 DDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKK 560 (698)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17650 84 IQSTTLVLQKAKDVYLQKCEELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRD 162 (396)
Q Consensus 84 ~q~~~~~l~KaKk~Y~~~CkE~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~ 162 (396)
.+...+.+...+-.-+..=..++.++.. +...-++++...|.++++++....-.+|+.++..=. ...|+.--.+|.
T Consensus 561 ~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kle~~k~~~~---~~s~d~~L~EEl 637 (698)
T KOG0978|consen 561 AQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKLERLKKEES---GASADEVLAEEL 637 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc---cccccHHHHHHH
Q ss_pred cchh-hhhccCCCCCcchHhHHHHHHHhhccc
Q psy17650 163 HKIH-VEIKPLSANTNQISASVDELRVTAGNL 193 (396)
Q Consensus 163 ~Ri~-v~ik~~~~~~~~~~as~eELr~sIeni 193 (396)
+.++ +.-+++.|...++..+..=.|.-.++|
T Consensus 638 k~yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~C 669 (698)
T KOG0978|consen 638 KEYKELLKCSVCNTRWKDAVITKCGHVFCEEC 669 (698)
T ss_pred HHHHhceeCCCccCchhhHHHHhcchHHHHHH
No 261
>KOG0161|consensus
Probab=29.77 E-value=1.3e+03 Score=29.56 Aligned_cols=40 Identities=23% Similarity=0.264 Sum_probs=24.9
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 71 KEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR 110 (396)
Q Consensus 71 ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk 110 (396)
++-...+.+....+..-.....|+++.+-..+.+++.++.
T Consensus 1100 ~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1100 KELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444445555556667788888888888877654
No 262
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=29.59 E-value=71 Score=24.19 Aligned_cols=31 Identities=13% Similarity=0.490 Sum_probs=18.2
Q ss_pred hhhccCCCccceEeeeccee-ec---ccchhhhhh
Q psy17650 336 SYFRGTDETRCQVKMSGDMM-LS---FPAGIVSIL 366 (396)
Q Consensus 336 ~~f~g~~~~~c~v~~~g~~~-~s---fp~g~~~~~ 366 (396)
.++.-..+..|+|.|||+=. ++ |..-+++.+
T Consensus 17 ~~l~~~~~~~C~I~ItGeSv~I~gC~~~~e~i~~i 51 (59)
T PF02495_consen 17 YLLQSPSSPSCVIVITGESVTISGCEFTPEFIEAI 51 (59)
T ss_pred HHHccCCCCCcEEEEeCcEEEEECCCCCHHHHHHH
Confidence 33323345589999999732 33 555555544
No 263
>PF04782 DUF632: Protein of unknown function (DUF632); InterPro: IPR006867 This conserved region contains a leucine zipper-like domain. The proteins are found only in plants and their functions are unknown.
Probab=29.46 E-value=3.7e+02 Score=27.36 Aligned_cols=36 Identities=25% Similarity=0.450 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHh
Q psy17650 92 QKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKK 127 (396)
Q Consensus 92 ~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kK 127 (396)
++.|..|+.+|+.+.++...|.....+||.+.-+++
T Consensus 105 E~~r~~yeKK~~~Lr~~d~kg~~~~kidkTra~v~~ 140 (312)
T PF04782_consen 105 EKLRIEYEKKCKQLRKQDAKGADSSKIDKTRASVKD 140 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence 468899999999998887777666666665554444
No 264
>KOG0243|consensus
Probab=29.29 E-value=1e+03 Score=28.30 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRR 110 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrk 110 (396)
+.....+.+.|+..+..|.+++.+..
T Consensus 479 ~~l~~~~~~~k~~L~~~~~el~~~~e 504 (1041)
T KOG0243|consen 479 ELLKEEKEKLKSKLQNKNKELESLKE 504 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566777777888888776643
No 265
>cd07605 I-BAR_IMD Inverse (I)-BAR, also known as the IRSp53/MIM homology Domain (IMD), a dimerization module that binds and bends membranes. Inverse (I)-BAR (or IMD) is a member of the Bin/Amphiphysin/Rvs (BAR) domain family. It is a dimerization and lipid-binding module that bends membranes and induces membrane protrusions in the opposite direction compared to classical BAR and F-BAR domains, which produce membrane invaginations. IMD domains are found in Insulin Receptor tyrosine kinase Substrate p53 (IRSp53), Missing in Metastasis (MIM), and Brain-specific Angiogenesis Inhibitor 1-Associated Protein 2-like (BAIAP2L) proteins. These are multi-domain proteins that act as scaffolding proteins and transducers of a variety of signaling pathways that link membrane dynamics and the underlying actin cytoskeleton. Most members contain an N-terminal IMD, an SH3 domain, and a WASP homology 2 (WH2) actin-binding motif at the C-terminus, exccept for MIM which does not carry an SH3 domain. Some me
Probab=29.23 E-value=5.3e+02 Score=24.90 Aligned_cols=15 Identities=7% Similarity=0.009 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhCC
Q psy17650 6 NNSKLFGKLAKQSGG 20 (396)
Q Consensus 6 ~YAKsL~KLAKka~~ 20 (396)
.|.-.|.|++-.+.+
T Consensus 45 ~~~dAl~kia~~A~~ 59 (223)
T cd07605 45 VFFDALAKIGELASQ 59 (223)
T ss_pred HHHHHHHHHHHHhcc
Confidence 455555555555544
No 266
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=29.20 E-value=6.2e+02 Score=25.65 Aligned_cols=37 Identities=11% Similarity=0.256 Sum_probs=15.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVC 57 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~ 57 (396)
++.|..--..+....+.+..+.-.+..+...+..++.
T Consensus 153 ~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~ 189 (312)
T smart00787 153 LEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELR 189 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444433333333
No 267
>cd07667 BAR_SNX30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX30 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.87 E-value=5.7e+02 Score=25.11 Aligned_cols=17 Identities=24% Similarity=0.305 Sum_probs=9.8
Q ss_pred hHHHHHHHHHHhHHHHH
Q psy17650 116 KDLEKAELKVKKAQEDY 132 (396)
Q Consensus 116 KeieKa~~K~kKA~e~Y 132 (396)
++++|++.+.+++++..
T Consensus 174 e~~~kLe~~ie~~~~~v 190 (240)
T cd07667 174 EERPKVPTDVEKCQDRV 190 (240)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34566666666665544
No 268
>PRK05560 DNA gyrase subunit A; Validated
Probab=28.21 E-value=5.2e+02 Score=29.62 Aligned_cols=53 Identities=17% Similarity=0.077 Sum_probs=39.0
Q ss_pred CChhHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch
Q psy17650 113 GSAKDLEKAELKVKKAQED---YKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKI 165 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~e~---Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri 165 (396)
.+.-|++|++..++...++ |+..+..-......+.+++.+-.++|-+.|.-.|
T Consensus 427 LT~~e~~kL~~E~~~l~~ei~~l~~iL~~~~~l~~~i~~EL~~ikkkfg~~RRT~I 482 (805)
T PRK05560 427 LTGLERDKIEDEYKELLALIADLKDILASPERLLEIIKEELLEIKEKFGDPRRTEI 482 (805)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCceEe
Confidence 5777888888877766654 4444555566788889999999999988665545
No 269
>cd07624 BAR_SNX7_30 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexins 7 and 30. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX7, SNX30, and similar proteins. The specific functions of SNX7 and SNX30 have not been elucidated. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=28.15 E-value=4.9e+02 Score=24.20 Aligned_cols=61 Identities=25% Similarity=0.219 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 95 KDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQED---------------YKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 95 Kk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~---------------Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
.-.|+..+-++.+.+.+ -.++++.++.+++.+.++ ++..+..|.+.+-+|-++|.+.+..|
T Consensus 122 q~~~e~~~e~L~~k~~~--l~~ev~~a~~~~e~~~~~~~~E~~rF~~~K~~d~k~~l~~~a~~qi~~~~~~~~~We~~ 197 (200)
T cd07624 122 QIEYELSVEELNKKRLE--LLKEVEKLQDKLECANADLKADLERWKQNKRQDLKKILLDMAEKQIQYYEQCLAAWEEV 197 (200)
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34455555555554433 445666666666655543 44444444444444544444444443
No 270
>PF04011 LemA: LemA family; InterPro: IPR007156 The members of this family are related to the LemA protein P71452 from SWISSPROT. The exact molecular function of this protein is uncertain. It is predicted to be a transmembrane protein with an extracellular N terminus [].; PDB: 2ETD_A.
Probab=28.08 E-value=4.7e+02 Score=23.90 Aligned_cols=45 Identities=18% Similarity=0.232 Sum_probs=26.4
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRN 158 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fq 158 (396)
-..+++.++.+..-+.+.|...|..|+.....|-..+...--.|.
T Consensus 123 l~~~l~~~E~~I~~aR~~YN~av~~yN~~i~~FP~~lvA~~~gf~ 167 (186)
T PF04011_consen 123 LMAQLEETENRIAAARRAYNDAVRDYNTAIRQFPTNLVAGIFGFK 167 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHhcCCC
Confidence 456777888899999999999999999999988777764443343
No 271
>KOG3691|consensus
Probab=27.78 E-value=4.4e+02 Score=30.74 Aligned_cols=105 Identities=19% Similarity=0.242 Sum_probs=58.0
Q ss_pred hhhHHHHH---HHHHHHHHhCC-----CCChHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHH-HHHHHHhhhhh
Q psy17650 2 NIEENNSK---LFGKLAKQSGG-----SGTFAPLWQVLKTSIEKIATVQVKM--MQKV-NDLVKDVCK-YTEELQKKHKL 69 (396)
Q Consensus 2 ~IEe~YAK---sL~KLAKka~~-----~GTl~~sW~~lk~e~Ekla~~H~~L--a~kL-~EliK~l~~-f~eeQkk~hKk 69 (396)
.+|+.|-+ .|..|++.-.+ +-++..+-..+...=|++-++...| ++.| +---+++++ |.+.. +||+
T Consensus 54 ~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~~~--q~K~ 131 (982)
T KOG3691|consen 54 RLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAENS--QYKK 131 (982)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhh--hHHH
Confidence 36666654 56666654332 3334444444444444443333333 1222 111135665 55543 4788
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 70 VKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR 110 (396)
Q Consensus 70 ~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk 110 (396)
|-+....+.|+.|.-++..+. -+|+.|+++..-+.+...
T Consensus 132 Vi~vL~eieEl~qvPqkie~~--i~keqY~~Asdll~~~~~ 170 (982)
T KOG3691|consen 132 VIEVLKEIEELRQVPQKIETL--IAKEQYLQASDLLTRAWE 170 (982)
T ss_pred HHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 866655566666666665554 478999999998887754
No 272
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=27.42 E-value=5.5e+02 Score=24.51 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=16.7
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
...-+.|++.+++.|++.|......+
T Consensus 137 de~KL~kae~el~~Ak~~Ye~lN~~L 162 (211)
T cd07588 137 DDQKLTKAEEELQQAKKVYEELNTEL 162 (211)
T ss_pred cHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445567777777777766665555
No 273
>PF04778 LMP: LMP repeated region; InterPro: IPR006864 This repeated sequence element is found in the LMP group of surface-located membrane proteins of Mycoplasma hominis. The the number of repeats in the protein affects the tendency of cells to spontaneously aggregate. Agglutination may be an important factor in colonization. Non-agglutinating microorganisms might easily be distributed whereas aggregation might provide a better chance to avoid an antibody response since some of the epitopes may be buried [].
Probab=26.44 E-value=5.2e+02 Score=23.84 Aligned_cols=90 Identities=16% Similarity=0.270 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--
Q psy17650 34 SIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD-- 111 (396)
Q Consensus 34 e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke-- 111 (396)
-+..|-+..-.|-.++.|+-+.|.+|-.+-.-..+++++ ++ +.++...... |.-..|...|+++...+..
T Consensus 38 nt~~mqsa~~sL~~Ki~ei~~kL~~Fn~dKea~F~eLq~----tr---~~I~eFi~~~-K~NpnY~~li~~Lt~~kd~k~ 109 (157)
T PF04778_consen 38 NTASMQSAKSSLDAKITEITKKLEKFNKDKEAKFNELQQ----TR---KQIDEFINKN-KNNPNYAELIKKLTQKKDSKN 109 (157)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH----HH---HHHHHHHhhc-cCCccHHHHHHHHHHHHHhhc
Confidence 445566666777788888888999987664333444432 22 3334444443 6667999999999887642
Q ss_pred ----cCChhHHHHHHHHHHhHHHH
Q psy17650 112 ----NGSAKDLEKAELKVKKAQED 131 (396)
Q Consensus 112 ----~~s~KeieKa~~K~kKA~e~ 131 (396)
+.+..||+-+...+++|...
T Consensus 110 sVt~SSNKSdI~aAN~~L~qAL~~ 133 (157)
T PF04778_consen 110 SVTESSNKSDIEAANQELKQALNK 133 (157)
T ss_pred cccccCcHHHHHHHHHHHHHHHHH
Confidence 35777888888888777654
No 274
>KOG0995|consensus
Probab=26.30 E-value=9.2e+02 Score=26.73 Aligned_cols=18 Identities=11% Similarity=0.154 Sum_probs=8.3
Q ss_pred CCChHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKI 38 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekl 38 (396)
.-+++.-|..+..-.-+.
T Consensus 261 ~eslre~~~~L~~D~nK~ 278 (581)
T KOG0995|consen 261 EESLREKKARLQDDVNKF 278 (581)
T ss_pred HHHHHHHHHHHHhHHHHH
Confidence 445555555444443333
No 275
>KOG1853|consensus
Probab=26.23 E-value=6.8e+02 Score=25.14 Aligned_cols=39 Identities=5% Similarity=0.032 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy17650 32 KTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLV 70 (396)
Q Consensus 32 k~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ 70 (396)
..|.-=-..+|+.+.+...+.-.++..|++.-.+.-+.+
T Consensus 12 ~eE~~ywk~l~~~ykq~f~~~reEl~EFQegSrE~Eael 50 (333)
T KOG1853|consen 12 LEEDQYWKLLHHEYKQHFLQMREELNEFQEGSREIEAEL 50 (333)
T ss_pred hhHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344444567788888888777778888888776665554
No 276
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=26.04 E-value=1e+03 Score=27.15 Aligned_cols=19 Identities=16% Similarity=0.391 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy17650 141 LIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 141 ~~r~~wE~~m~~~cq~Fqd 159 (396)
....+++..+...|+..++
T Consensus 314 ~le~~lq~~~k~~~qlt~e 332 (786)
T PF05483_consen 314 ALEEDLQQATKTLIQLTEE 332 (786)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3333444444444554444
No 277
>PF07464 ApoLp-III: Apolipophorin-III precursor (apoLp-III); InterPro: IPR010009 This family consists of several insect apolipoprotein-III sequences. Exchangeable apolipoproteins constitute a functionally important family of proteins that play critical roles in lipid transport and lipoprotein metabolism. Apolipophorin III (apoLp-III) is a prototypical exchangeable apolipoprotein found in many insect species that functions in transport of diacylglycerol (DAG) from the fat body lipid storage depot to flight muscles in the adult life stage [].; GO: 0008289 lipid binding, 0006869 lipid transport, 0005576 extracellular region; PDB: 1EQ1_A.
Probab=25.99 E-value=5.1e+02 Score=23.66 Aligned_cols=30 Identities=13% Similarity=0.257 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 26 PLWQVLKTSIEKIATVQVKMMQKVNDLVKD 55 (396)
Q Consensus 26 ~sW~~lk~e~Ekla~~H~~La~kL~EliK~ 55 (396)
..-..++..+++++.-=..+...|+|.+++
T Consensus 27 Ev~~aik~~sd~~~~~l~~~~~~l~eeik~ 56 (155)
T PF07464_consen 27 EVVKAIKEQSDSVAQQLQNVSSSLQEEIKD 56 (155)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 344567778888887777778888777665
No 278
>cd07588 BAR_Amphiphysin The Bin/Amphiphysin/Rvs (BAR) domain of Amphiphysins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Amphiphysins function primarily in endocytosis and other membrane remodeling events. They contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. This subfamily is composed of different isoforms of amphiphysin and Bridging integrator 2 (Bin2). Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin and synaptojanin. They function in synaptic vesicle endocytosis. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of th
Probab=25.56 E-value=6e+02 Score=24.28 Aligned_cols=25 Identities=12% Similarity=0.329 Sum_probs=11.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHhhhhh
Q psy17650 45 MMQKVN-DLVKDVCKYTEELQKKHKL 69 (396)
Q Consensus 45 La~kL~-EliK~l~~f~eeQkk~hKk 69 (396)
+...|. .++.++..|..--...+|.
T Consensus 84 l~~~l~~~Vl~Pl~~~~s~f~~i~k~ 109 (211)
T cd07588 84 LEEKLSDQVLGPLTAYQSQFPEVKKR 109 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444442 4455666655444333333
No 279
>KOG4552|consensus
Probab=25.41 E-value=6.4e+02 Score=24.59 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q psy17650 51 DLVKDVCKYTEELQKK 66 (396)
Q Consensus 51 EliK~l~~f~eeQkk~ 66 (396)
+.++.+.+...+|-|.
T Consensus 57 ~ef~~llkla~eq~k~ 72 (272)
T KOG4552|consen 57 DEFKTLLKLAPEQQKR 72 (272)
T ss_pred HHHHHHHHHhHhHHHH
Confidence 3444555555554433
No 280
>KOG2176|consensus
Probab=25.28 E-value=1.1e+03 Score=27.23 Aligned_cols=39 Identities=10% Similarity=0.175 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy17650 30 VLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHK 68 (396)
Q Consensus 30 ~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hK 68 (396)
.|++++++|.+.=.++=.+|++.-+++..=.++..+-|+
T Consensus 84 ~Vr~daq~Lks~vsd~N~rLQ~~g~eLiv~~e~lv~~r~ 122 (800)
T KOG2176|consen 84 KVRGDAQKLKSQVSDTNRRLQESGKELIVKKEDLVRCRT 122 (800)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 455566665554444555666666666555555444433
No 281
>PRK00118 putative DNA-binding protein; Validated
Probab=25.04 E-value=1.9e+02 Score=24.66 Aligned_cols=56 Identities=13% Similarity=-0.002 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 43 VKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYL 99 (396)
Q Consensus 43 ~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~ 99 (396)
.+++..+.-=...|..+....++.-|+..+.+ |+.+..+.|+..+..+..+++.|.
T Consensus 37 ~EIAe~lGIS~~TV~r~L~RArkkLr~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 92 (104)
T PRK00118 37 GEIAEEFNVSRQAVYDNIKRTEKLLEDYEEKL-HLYEKFIERNELFDKIAYLKEKYP 92 (104)
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHH-ChHHHHHHHHHHHHHHHHHHHccc
Confidence 34444443222334444444433334433332 677777788888888888877764
No 282
>PRK01919 tatB sec-independent translocase; Provisional
Probab=25.04 E-value=2e+02 Score=26.78 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHH
Q psy17650 9 KLFGKLAKQSGG-SGTFAPLWQVLKTSIEKIAT 40 (396)
Q Consensus 9 KsL~KLAKka~~-~GTl~~sW~~lk~e~Ekla~ 40 (396)
+.|=++++..+. +|.++.+...++.++++..+
T Consensus 23 ekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~e 55 (169)
T PRK01919 23 ERLPRVARTAGALFGRAQRYINDVKAEVSREIE 55 (169)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777777 89999999999988887653
No 283
>KOG3564|consensus
Probab=24.88 E-value=6.2e+02 Score=27.65 Aligned_cols=15 Identities=20% Similarity=0.279 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q psy17650 28 WQVLKTSIEKIATVQ 42 (396)
Q Consensus 28 W~~lk~e~Ekla~~H 42 (396)
++.+.--+|-++..|
T Consensus 12 f~~l~r~~~~l~~g~ 26 (604)
T KOG3564|consen 12 FEQLVRDIEILGEGN 26 (604)
T ss_pred HHHHHHHHHHhcCcc
Confidence 333333444444444
No 284
>KOG0980|consensus
Probab=24.85 E-value=1.2e+03 Score=27.45 Aligned_cols=131 Identities=15% Similarity=0.168 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17650 33 TSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDN 112 (396)
Q Consensus 33 ~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~ 112 (396)
.+.-+++.--+.=.++|+++.-.+..++.+.-+....+++.+ +....+.+..+|-|+.|...-.+--.+....
T Consensus 375 ~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e-------~~~l~~e~ry~klkek~t~l~~~h~~lL~K~ 447 (980)
T KOG0980|consen 375 QEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAE-------NKALAAENRYEKLKEKYTELRQEHADLLRKY 447 (980)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred C-ChhHHH---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhc
Q psy17650 113 G-SAKDLE---KAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIK 170 (396)
Q Consensus 113 ~-s~Keie---Ka~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik 170 (396)
. ..|+++ +...++++-.......++++.+...+||.+..+..+..+..|-+.....++
T Consensus 448 ~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e 509 (980)
T KOG0980|consen 448 DDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIE 509 (980)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
No 285
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=24.80 E-value=8.1e+02 Score=27.37 Aligned_cols=27 Identities=15% Similarity=0.306 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy17650 117 DLEKAELKVKKAQEDYKTIVDKYALIK 143 (396)
Q Consensus 117 eieKa~~K~kKA~e~Yk~~v~kye~~r 143 (396)
|+..++..++-+++.|.....+|++++
T Consensus 377 e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 377 DLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555556666666666666666555
No 286
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=24.61 E-value=9.7e+02 Score=26.42 Aligned_cols=20 Identities=15% Similarity=0.116 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy17650 89 LVLQKAKDVYLQKCEELDKL 108 (396)
Q Consensus 89 ~~l~KaKk~Y~~~CkE~E~l 108 (396)
..+.+.+..|...-.+++.+
T Consensus 435 ~~l~~~~~~~~~~~~~~~~~ 454 (650)
T TIGR03185 435 NELFRSEAEIEELLRQLETL 454 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444433
No 287
>PF06419 COG6: Conserved oligomeric complex COG6; InterPro: IPR010490 COG6 is a component of the conserved oligomeric golgi complex, which is composed of eight different subunits and is required for normal golgi morphology and localisation.
Probab=24.58 E-value=8.3e+02 Score=27.01 Aligned_cols=82 Identities=13% Similarity=0.210 Sum_probs=42.0
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc---CchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 28 WQVLKTSIEK-IATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQ---GPTLEIVQTIQSTTLVLQKAKDVYLQKCE 103 (396)
Q Consensus 28 W~~lk~e~Ek-la~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~---~~~~ea~k~~q~~~~~l~KaKk~Y~~~Ck 103 (396)
=..+|..+|+ +-.+|.++-...+.+.+.+..+.....+-++.+.+.. .......+.+-.....+.+-++.-+.+++
T Consensus 18 Rr~LR~~iE~~~l~~~~~~L~~f~~v~~~l~~~~~~v~~l~~~~~~~~~~l~~~~~~t~~ll~~~~~L~~~~~~~~~k~~ 97 (618)
T PF06419_consen 18 RRNLRSDIEKRLLKINQEFLKEFSPVNRQLKRLQSDVDKLNSSCDQMQDRLSAAKSETSDLLEEASELREQKEELELKKK 97 (618)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566776665 4567777777777777777766665554444432221 11111112233334444444555555555
Q ss_pred HHHHHh
Q psy17650 104 ELDKLR 109 (396)
Q Consensus 104 E~E~lr 109 (396)
-+...+
T Consensus 98 ll~~f~ 103 (618)
T PF06419_consen 98 LLDAFL 103 (618)
T ss_pred HHHHHH
Confidence 554443
No 288
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.45 E-value=6.6e+02 Score=24.39 Aligned_cols=13 Identities=31% Similarity=0.616 Sum_probs=7.7
Q ss_pred hHhHHHHHHHh-hc
Q psy17650 179 ISASVDELRVT-AG 191 (396)
Q Consensus 179 ~~as~eELr~s-Ie 191 (396)
+...+++++.. ++
T Consensus 93 Lk~~in~~R~e~lg 106 (230)
T PF10146_consen 93 LKDEINELRKEYLG 106 (230)
T ss_pred HHHHHHHHHHHHcC
Confidence 34556777766 44
No 289
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=24.13 E-value=8.1e+02 Score=26.83 Aligned_cols=44 Identities=18% Similarity=0.333 Sum_probs=36.7
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
..++.+.+...++.+...++..-+.++.+|.-||..+..-++.+
T Consensus 453 aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHL 496 (518)
T PF10212_consen 453 AEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHL 496 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 45566677778888888899999999999999999998888776
No 290
>PF01093 Clusterin: Clusterin; InterPro: IPR000753 Clusterin is a vertebrate glycoprotein [], the exact function of which is not yet clear. Clusterin expression is complex, appearing as different forms in different cell compartments. One set of proteins is directed for secretion, and other clusterin species are expressed in the cytoplasm and nucleus. The secretory form of the clusterin protein (sCLU) is targeted to the ER by an initial leader peptide. This ~60kDa pre-sCLU protein is further glycosylated and proteolytically cleaved into alpha- and beta-subunits, held together by disulphide bonds. External sCLU is an 80kDa protein and may act as a molecular chaperone, scavenging denatured proteins outside cells following specific stress-induced injury such as heat shock. sCLU possesses nonspecific binding activity to hydrophobic domains of various proteins in vitro []. A specific nuclear form of CLU (nCLU) acts as a pro-death signal, inhibiting cell growth and survival. The nCLU protein has two coiled-coil domains, one at its N terminus that is unable to bind Ku70, and a C-terminal coiled-coil domain that is uniquely able to associate with Ku70 and is minimally required for cell death. Clusterin is synthesized as a precursor polypeptide of about 400 amino acids which is post-translationally cleaved to form two subunits of about 200 amino acids each. The two subunits are linked by five disulphide bonds to form an antiparallel ladder-like structure []. In each of the mature subunits the five cysteines that are involved in disulphide bonds are clustered in domains of about 30 amino acids located in the central part of the subunits. This entry represents the clusterin precursor and related proteins.; GO: 0008219 cell death
Probab=23.87 E-value=8.9e+02 Score=25.92 Aligned_cols=90 Identities=19% Similarity=0.143 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhh----hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHH
Q psy17650 49 VNDLVKDVCKYTEELQKK----HKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELK 124 (396)
Q Consensus 49 L~EliK~l~~f~eeQkk~----hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K 124 (396)
|+++-..=.+|.+++.++ =|++|..++.+.+-+ +.....|.|+|+.++.+-+. ++.-
T Consensus 3 Lk~lS~~GekyvdeEik~Al~GvKqMK~~Mek~eeeh---~~Lm~tL~k~kk~KeeAl~l----------------~~e~ 63 (436)
T PF01093_consen 3 LKELSEQGEKYVDEEIKNALNGVKQMKTMMEKTEEEH---KELMKTLEKSKKEKEEALKL----------------ANEV 63 (436)
T ss_pred hHHHhHhCchhHHHHHHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHHHHHHHHHHHH----------------HHHH
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 125 VKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 125 ~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
-+|-.+.=+.|.+.+.....+=.--...+|.+|
T Consensus 64 e~kLee~e~~Cn~sm~~lWeECkpCL~~tCm~F 96 (436)
T PF01093_consen 64 EEKLEEEEEVCNESMMALWEECKPCLKQTCMRF 96 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
No 291
>KOG0804|consensus
Probab=23.71 E-value=9.5e+02 Score=25.97 Aligned_cols=18 Identities=22% Similarity=0.285 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17650 88 TLVLQKAKDVYLQKCEEL 105 (396)
Q Consensus 88 ~~~l~KaKk~Y~~~CkE~ 105 (396)
...++++|+.-+.+|.++
T Consensus 370 ~~~~e~~kk~~e~k~~q~ 387 (493)
T KOG0804|consen 370 SSDLEAEKKIVERKLQQL 387 (493)
T ss_pred hhHHHHHHHHHHHHHHHH
Confidence 344556666666666654
No 292
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.68 E-value=4.9e+02 Score=22.61 Aligned_cols=81 Identities=12% Similarity=0.135 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17650 30 VLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLR 109 (396)
Q Consensus 30 ~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lr 109 (396)
.+..++..+-..-.....++..+..++..-.+.......+++.++....++++.++.....+...+........+.+.++
T Consensus 7 ~l~~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~ 86 (132)
T PF07926_consen 7 SLQSELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAK 86 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444433334433333333334444444455566677777777777777777777777766665
Q ss_pred h
Q psy17650 110 R 110 (396)
Q Consensus 110 k 110 (396)
.
T Consensus 87 ~ 87 (132)
T PF07926_consen 87 A 87 (132)
T ss_pred H
Confidence 4
No 293
>PF00621 RhoGEF: RhoGEF domain; InterPro: IPR000219 The Rho family GTPases Rho, Rac and CDC42 regulate a diverse array of cellular processes. Like all members of the Ras superfamily, the Rho proteins cycle between active GTP-bound and inactive GDP-bound conformational states. Activation of Rho proteins through release of bound GDP and subsequent binding of GTP, is catalysed by guanine nucleotide exchange factors (GEFs) in the Dbl family. The proteins encoded by members of the Dbl family share a common domain, presented in this entry, of about 200 residues (designated the Dbl homology or DH domain) that has been shown to encode a GEF activity specific for a number of Rho family members. In addition, all family members possess a second, shared domain designated the pleckstrin homology (PH) domain (IPR001849 from INTERPRO). Trio and its homologue UNC-73 are unique within the Dbl family insomuch as they encode two distinct DH/PH domain modules. The PH domain is invariably located immediately C-terminal to the DH domain and this invariant topography suggests a functional interdependence between these two structural modules. Biochemical data have established the role of the conserved DH domain in Rho GTPase interaction and activation, and the role of the tandem PH domain in intracellular targeting and/or regulation of DH domain function. The DH domain of Dbl has been shown to mediate oligomerisation that is mostly homophilic in nature. In addition to the tandem DH/PH domains Dbl family GEFs contain diverse structural motifs like serine/threonine kinase, RBD, PDZ, RGS, IQ, REM, Cdc25, RasGEF, CH, SH2, SH3, EF, spectrin or Ig. The DH domain is composed of three structurally conserved regions separated by more variable regions. It does not share significant sequence homology with other subtypes of small G-protein GEF motifs such as the Cdc25 domain and the Sec7 domain, which specifically interact with Ras and ARF family small GTPases, respectively, nor with other Rho protein interactive motifs, indicating that the Dbl family proteins are evolutionarily unique. The DH domain is composed of 11 alpha helices that are folded into a flattened, elongated alpha-helix bundle in which two of the three conserved regions, conserved region 1 (CR1) and conserved region 3 (CR3), are exposed near the centre of one surface. CR1 and CR3, together with a part of alpha-6 and the DH/PH junction site, constitute the Rho GTPase interacting pocket.; GO: 0005089 Rho guanyl-nucleotide exchange factor activity, 0035023 regulation of Rho protein signal transduction, 0005622 intracellular; PDB: 3MPX_A 2RGN_E 2Z0Q_A 3T06_A 3KZ1_A 1XCG_E 2KR9_A 1BY1_A 1RJ2_J 1KZG_C ....
Probab=23.64 E-value=4.7e+02 Score=22.41 Aligned_cols=49 Identities=12% Similarity=0.128 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHHHHhCC-----CCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 3 IEENNSKLFGKLAKQSGG-----SGTF-APLWQVLKTSIEKIATVQVKMMQKVND 51 (396)
Q Consensus 3 IEe~YAKsL~KLAKka~~-----~GTl-~~sW~~lk~e~Ekla~~H~~La~kL~E 51 (396)
-|..|...|..|.+.... .+.+ ..--..+...++.+.++|.+|...|.+
T Consensus 8 tE~~y~~~L~~l~~~~~~~l~~~~~~l~~~~~~~lf~~i~~l~~~h~~ll~~L~~ 62 (180)
T PF00621_consen 8 TERSYVEDLEILVEVFLKPLRKRSPLLSEDEIKSLFGNIEELIEIHQQLLESLEE 62 (180)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHTTSSHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHhcchhhhhhHHHHHHHHHHH
Confidence 488899999998775533 1233 233455667888999999888887755
No 294
>KOG4031|consensus
Probab=23.63 E-value=2.9e+02 Score=26.72 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q psy17650 49 VNDLVKDVCKYTEELQ 64 (396)
Q Consensus 49 L~EliK~l~~f~eeQk 64 (396)
+++.-+.|.+|+++|.
T Consensus 101 ~~~epE~IRkWkeeQ~ 116 (216)
T KOG4031|consen 101 LRDEPEKIRKWKEEQM 116 (216)
T ss_pred cccChHHHHHHHHHHH
Confidence 4556678888988885
No 295
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.62 E-value=5.7e+02 Score=23.40 Aligned_cols=11 Identities=0% Similarity=-0.001 Sum_probs=6.5
Q ss_pred HHHHHHHHHHH
Q psy17650 52 LVKDVCKYTEE 62 (396)
Q Consensus 52 liK~l~~f~ee 62 (396)
..++|.++.++
T Consensus 31 ~~ppI~~iLe~ 41 (155)
T PRK06569 31 ITPKAEEIFNN 41 (155)
T ss_pred hHHHHHHHHHH
Confidence 45666665554
No 296
>cd07685 F-BAR_Fes The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Fes (feline sarcoma) tyrosine kinase. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Fes (feline sarcoma), also called Fps (Fujinami poultry sarcoma), is a cytoplasmic (or nonreceptor) tyrosine kinase whose gene was first isolated from tumor-causing retroviruses. It is expressed in myeloid, vascular endothelial, epithelial, and neuronal cells, and plays important roles in cell growth and differentiation, angiogenesis, inflammation and immunity, and cytoskeletal regulation. Fes kinase has also been implicated as a tumor suppressor in colorectal cancer. It contains an N-terminal F-BAR domain, an SH2 domain, and a C-terminal catalytic kinase domain. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that binds to negatively-charged lipid membranes. They can induce membrane def
Probab=23.58 E-value=7.1e+02 Score=24.48 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Q psy17650 89 LVLQKAKDVYLQKCEELDKLRRD 111 (396)
Q Consensus 89 ~~l~KaKk~Y~~~CkE~E~lrke 111 (396)
+...|+++.|...|..+..++++
T Consensus 161 K~~~K~~EKy~~m~~KL~~~hN~ 183 (237)
T cd07685 161 KDRDKAKEKYVKSLWKLYALHNE 183 (237)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhH
Confidence 45678888888888887776653
No 297
>KOG3876|consensus
Probab=23.31 E-value=7.8e+02 Score=24.86 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=28.4
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy17650 123 LKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 123 ~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v 167 (396)
.+...|++.|+..-++|+.+|.|---+| +-+|+-||+|
T Consensus 257 ~~le~aq~~~q~hkekYeKlrnDvaiKm-------kfLeENrIkV 294 (341)
T KOG3876|consen 257 NLLEGAQEKFQAHKEKYEKLRNDVAIKM-------KFLEENRIKV 294 (341)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHHHHH-------HHHHhhhHHH
Confidence 4567788889999999999998874444 3456677765
No 298
>KOG2072|consensus
Probab=23.30 E-value=1.2e+03 Score=27.33 Aligned_cols=135 Identities=16% Similarity=0.158 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHhhhhhhhhc--cCchHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHhhccCC
Q psy17650 42 QVKMMQKVNDLVKDVCK--YTEELQKKHKLVKEE--QGPTLEIVQTIQST-TLVLQKAKDVYLQ--KCEELDKLRRDNGS 114 (396)
Q Consensus 42 H~~La~kL~EliK~l~~--f~eeQkk~hKk~ke~--~~~~~ea~k~~q~~-~~~l~KaKk~Y~~--~CkE~E~lrke~~s 114 (396)
|-.++-+--|++-+|.+ +.++---+.|.+-+. +......++.+-+. ....+.|++.-.. +..+++-|.. +.+
T Consensus 47 ~EpIMfKyleLCVdLkKg~lAKdGL~QYk~~~Qqvnv~SlE~VvrhflklAe~kte~Aq~qad~l~~ve~vdDLe~-~~t 125 (988)
T KOG2072|consen 47 LEPIMFKYLELCVDLKKGHLAKDGLFQYKNLCQQVNVKSLENVVRHFLKLAEEKTEAAQEQADELQKVEEVDDLEA-GVT 125 (988)
T ss_pred hHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccc-CCC
Q ss_pred hhHHH-------HHHHHHHhHH---------HHHHHHHHHH-HHHHHHHHHHHH-----HHHHHHhh-ccccchhhhhcc
Q psy17650 115 AKDLE-------KAELKVKKAQ---------EDYKTIVDKY-ALIKEDFEKRMS-----TSCKIRND-DRDHKIHVEIKP 171 (396)
Q Consensus 115 ~Keie-------Ka~~K~kKA~---------e~Yk~~v~ky-e~~r~~wE~~m~-----~~cq~Fqd-~E~~Ri~v~ik~ 171 (396)
+..|- .++....... |+|++|.+-+ +.++.+=...++ ..|.++|. -|-+|+
T Consensus 126 PEslllSvVsGe~sqdR~DR~lltPWlkFLWeSYR~vLdlLRNNa~lE~lY~~ia~~aFqFCLkYqRktEFRrL------ 199 (988)
T KOG2072|consen 126 PESLLLSVVSGEDSQDRSDRELLTPWLKFLWESYRTVLDLLRNNARLEALYHDIARKAFQFCLKYQRKTEFRRL------ 199 (988)
T ss_pred hHHHHHHHhcccccccccchHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------
Q ss_pred CCCCCcchHhHHHHHHHhhcccc
Q psy17650 172 LSANTNQISASVDELRVTAGNLT 194 (396)
Q Consensus 172 ~~~~~~~~~as~eELr~sIeni~ 194 (396)
|+-||.-+++|+
T Consensus 200 -----------Ce~LR~HL~~i~ 211 (988)
T KOG2072|consen 200 -----------CELLRMHLDNIN 211 (988)
T ss_pred -----------HHHHHHHHHHHH
No 299
>PRK10869 recombination and repair protein; Provisional
Probab=23.30 E-value=9.9e+02 Score=26.02 Aligned_cols=68 Identities=18% Similarity=0.164 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHhh----ccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy17650 81 VQTIQSTTLVLQKAKDVYLQKCEEL----DKLRR----DNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEK 148 (396)
Q Consensus 81 ~k~~q~~~~~l~KaKk~Y~~~CkE~----E~lrk----e~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~ 148 (396)
...++.+...+.+.|+.|..--.++ ++++. -.....++++++.+.+++.+.|...-.++...|...-.
T Consensus 298 l~~ie~Rl~~l~~L~rKyg~~~~~~~~~~~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~ 373 (553)
T PRK10869 298 LAELEQRLSKQISLARKHHVSPEELPQHHQQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAK 373 (553)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445677778888888887332222 11111 13466778888999999999998888888888876533
No 300
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=23.26 E-value=1.1e+03 Score=26.90 Aligned_cols=15 Identities=0% Similarity=0.096 Sum_probs=9.6
Q ss_pred HHHHHHHhhhhccCC
Q psy17650 328 VAFHEIIHSYFRGTD 342 (396)
Q Consensus 328 ~a~~e~~~~~f~g~~ 342 (396)
.++-..|+.|.+...
T Consensus 734 G~Lr~~v~~~L~~~~ 748 (771)
T TIGR01069 734 GKLRKGVQELLKNHP 748 (771)
T ss_pred hHHHHHHHHHhcCCc
Confidence 356677777776643
No 301
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=22.98 E-value=6.4e+02 Score=23.73 Aligned_cols=50 Identities=16% Similarity=0.153 Sum_probs=22.9
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLV 70 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ 70 (396)
+.+|+.=-..++...+.......++...-..+.+|+.+..++..+-+|++
T Consensus 29 IksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 29 IKSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444445555555544444444433
No 302
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=22.93 E-value=8.6e+02 Score=25.18 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 80 IVQTIQSTTLVLQKAKDVYLQKCEELDKL 108 (396)
Q Consensus 80 a~k~~q~~~~~l~KaKk~Y~~~CkE~E~l 108 (396)
.++........+.++++.|.+.-.-...+
T Consensus 271 l~~eYr~~~~~ls~~~~~y~~~s~~V~~~ 299 (359)
T PF10498_consen 271 LIQEYRSAQDELSEVQEKYKQASEGVSER 299 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33444455555666777776666555443
No 303
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=22.89 E-value=3.2e+02 Score=22.66 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=27.8
Q ss_pred hhHHHHHHHHHHhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHhh
Q psy17650 115 AKDLEKAELKVKKAQEDYKTIVDKY------ALIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 115 ~KeieKa~~K~kKA~e~Yk~~v~ky------e~~r~~wE~~m~~~cq~Fqd 159 (396)
.+||++++.|...+.++....--++ .+.|.+.|++|..-+.+...
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~ 54 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRLRRRELSPEARRSLEKELNELKEKLEN 54 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhc
Confidence 4566777777766666555554444 55666676666666655544
No 304
>smart00325 RhoGEF Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases. Guanine nucleotide exchange factor for Rho/Rac/Cdc42-like GTPases Also called Dbl-homologous (DH) domain. It appears that PH domains invariably occur C-terminal to RhoGEF/DH domains. Improved coverage.
Probab=22.59 E-value=5.2e+02 Score=22.50 Aligned_cols=50 Identities=14% Similarity=0.053 Sum_probs=34.7
Q ss_pred hhHHHHHHHHHHHHHhCC----C--CChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 3 IEENNSKLFGKLAKQSGG----S--GTFAPLWQVLKTSIEKIATVQVKMMQKVNDL 52 (396)
Q Consensus 3 IEe~YAKsL~KLAKka~~----~--GTl~~sW~~lk~e~Ekla~~H~~La~kL~El 52 (396)
-|+.|-+.|..+-+.... . .--..-.+.+...++.+-.+|..+...|++.
T Consensus 8 tE~~Yv~~L~~l~~~y~~~l~~~~~~~~~~~~~~iF~~i~~i~~~h~~~l~~l~~~ 63 (180)
T smart00325 8 TERNYVRDLKLLVEVFLKPLKKELKLLSPNELETLFGNIEEIYEFHRDFLDELEER 63 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 488999999988774432 1 2234556666678888999998877776543
No 305
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=22.53 E-value=4.2e+02 Score=25.90 Aligned_cols=73 Identities=18% Similarity=0.221 Sum_probs=47.8
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhccccchhhhhccCCCC-CcchHhHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKYAL-----IKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSAN-TNQISASVDELR 187 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~kye~-----~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~~-~~~~~as~eELr 187 (396)
-+.||+++-.|+.-..+.|...-++++. -+..+|.....--++.| |++-+||+.+.+ ..++.....+-|
T Consensus 6 LQ~Eid~~lKkv~EG~~~F~~i~~K~~~~~n~~QKEK~E~DLKkEIKKLQ-----R~RdQIK~W~~~~diKdk~~L~e~R 80 (233)
T PF04065_consen 6 LQQEIDRTLKKVQEGVEEFDEIYEKVESATNQNQKEKLEADLKKEIKKLQ-----RLRDQIKTWLSSNDIKDKKKLLENR 80 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcccCcchHHHHHHHHHHHHHHHH-----HHHHHHHHHccCcccccHHHHHHHH
Confidence 3567777777777777777777777744 34456666665555555 444577887764 346777777778
Q ss_pred Hhhc
Q psy17650 188 VTAG 191 (396)
Q Consensus 188 ~sIe 191 (396)
..||
T Consensus 81 k~IE 84 (233)
T PF04065_consen 81 KLIE 84 (233)
T ss_pred HHHH
Confidence 7777
No 306
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=22.52 E-value=6.9e+02 Score=23.92 Aligned_cols=36 Identities=22% Similarity=0.282 Sum_probs=18.1
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 124 KVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 124 K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd 159 (396)
|++...+.|+..-+.|-..-.+|+..+..--++|+.
T Consensus 101 k~K~vi~~~k~NEE~Lkk~~~ey~~~l~~~eqry~a 136 (207)
T PF05010_consen 101 KQKEVIEGYKKNEETLKKCIEEYEERLKKEEQRYQA 136 (207)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344455555555555555555555544455543
No 307
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=22.46 E-value=7.9e+02 Score=24.61 Aligned_cols=20 Identities=5% Similarity=0.014 Sum_probs=10.1
Q ss_pred chHhHHHHHHHhhcccccCC
Q psy17650 178 QISASVDELRVTAGNLTLSP 197 (396)
Q Consensus 178 ~~~as~eELr~sIeni~v~~ 197 (396)
.-.++..+....|.+|.++.
T Consensus 247 ~t~qIl~dAe~~L~~w~~~~ 266 (271)
T PF13805_consen 247 QTRQILNDAERALRSWQPDT 266 (271)
T ss_dssp HHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHhCccCc
Confidence 44567777777777776653
No 308
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=22.39 E-value=7.8e+02 Score=24.50 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---c-cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy17650 89 LVLQKAKDVYLQKCEELDKLRR---D-NGSAKDLEKAELKVKKAQEDYKTIVDKYALIK 143 (396)
Q Consensus 89 ~~l~KaKk~Y~~~CkE~E~lrk---e-~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r 143 (396)
..+.+++..|...-++.++++. . ..+..+++.++..++.+...|...-.++....
T Consensus 121 ~~i~~a~~~l~~a~~~~~R~~~L~~~g~vS~~~~~~a~~~~~~a~~~l~~a~~~~~~~~ 179 (346)
T PRK10476 121 EQVERARANAKLATRTLERLEPLLAKGYVSAQQVDQARTAQRDAEVSLNQALLQAQAAA 179 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667777777777777653 3 36999999999988888877776665555443
No 309
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=22.37 E-value=4e+02 Score=21.19 Aligned_cols=53 Identities=8% Similarity=0.127 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 2 NIEENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVC 57 (396)
Q Consensus 2 ~IEe~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~ 57 (396)
.++..|.|.+..|-.. |..|+..+.....+-..+..--..|.+++..+.+.+.
T Consensus 14 ~Lq~~y~~q~~~Wq~s---y~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~ 66 (70)
T PF04899_consen 14 ELQQSYEKQQQEWQSS---YADLQHMFEQTSQENAALSEQVNNLSQQVQRLSEQLE 66 (70)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888888777665 3445555555555555555555555555555554444
No 310
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=22.35 E-value=1e+03 Score=25.96 Aligned_cols=102 Identities=20% Similarity=0.252 Sum_probs=48.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhhhhhhc---cCchHHHHHH-HHHHHHHHHHHH
Q psy17650 23 TFAPLWQVLKTSIEKIATVQVKMMQKVNDLVK---DVCKYTEELQKKHKLVKEE---QGPTLEIVQT-IQSTTLVLQKAK 95 (396)
Q Consensus 23 Tl~~sW~~lk~e~Ekla~~H~~La~kL~EliK---~l~~f~eeQkk~hKk~ke~---~~~~~ea~k~-~q~~~~~l~KaK 95 (396)
+|....+.+-.+++++-.--.+|-.+++|..| .++...+ +.|.++.. ....+.+.+. .+++..++.+-+
T Consensus 261 ~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~e----k~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~ 336 (622)
T COG5185 261 GFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLRE----KWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLK 336 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHH
Confidence 44555555666666666555555555543222 2221111 11222111 1122333332 356666666666
Q ss_pred HHHHHHHHHHHHHh-----------hccCChhHHHHHHHHHHhH
Q psy17650 96 DVYLQKCEELDKLR-----------RDNGSAKDLEKAELKVKKA 128 (396)
Q Consensus 96 k~Y~~~CkE~E~lr-----------ke~~s~KeieKa~~K~kKA 128 (396)
...+.+-.|++-|+ +++.+..|.+++...-.+-
T Consensus 337 ~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L 380 (622)
T COG5185 337 SEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKL 380 (622)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 66666555554432 3456777777655544443
No 311
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=22.34 E-value=1.4e+03 Score=27.32 Aligned_cols=45 Identities=9% Similarity=0.198 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17650 25 APLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKL 69 (396)
Q Consensus 25 ~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk 69 (396)
..-|..+..+...+-.-|.++...+.+..+.|.....+....++.
T Consensus 238 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~ 282 (1163)
T COG1196 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREE 282 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555566666666656665555554444333
No 312
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=22.16 E-value=7.4e+02 Score=25.15 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHh---hcc-CChhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy17650 90 VLQKAKDVYLQKCEELDKLR---RDN-GSAKDLEKAELKVKKAQEDYKTIVDKYALIK 143 (396)
Q Consensus 90 ~l~KaKk~Y~~~CkE~E~lr---ke~-~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r 143 (396)
.+..++..|...-.+++|.+ +.+ .+..++++++..++.|+..|...-..|+.++
T Consensus 107 ~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~~a~a~~~~a~a~l~~a~ 164 (385)
T PRK09859 107 SLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLNEAEANVTVAKAAVEQAT 164 (385)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444554455555543 233 6888999988888887766666555554443
No 313
>KOG0163|consensus
Probab=21.99 E-value=1.3e+03 Score=26.93 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=15.7
Q ss_pred ccCCCCCCcccccccchhhHHHHHHHHh
Q psy17650 308 NSSRGPSPLTIGMSDTIPLAVAFHEIIH 335 (396)
Q Consensus 308 ~~srgpsp~~~~~~~~~p~a~a~~e~~~ 335 (396)
..++-|-.|+.|--|.-=--.++.|+-.
T Consensus 1188 ~~~kpP~lLvAGkDDmqMCeL~LeeTgL 1215 (1259)
T KOG0163|consen 1188 HPDKPPILLVAGKDDMQMCELSLEETGL 1215 (1259)
T ss_pred cCCCCCeEEEecCchHHHhcchhHhhcc
Confidence 5666666677776664333344445433
No 314
>PF14612 Ino80_Iec3: IEC3 subunit of the Ino80 complex, chromatin re-modelling
Probab=21.67 E-value=89 Score=30.51 Aligned_cols=28 Identities=25% Similarity=0.501 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 132 YKTIVDKYALIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 132 Yk~~v~kye~~r~~wE~~m~~~cq~Fqd 159 (396)
|+.+-.||..+|-.|+.+|.++-.-|.+
T Consensus 1 ykS~kkKy~Kmri~Fd~~m~~~~~l~~~ 28 (232)
T PF14612_consen 1 YKSWKKKYRKMRIKFDQKMKESEELFRE 28 (232)
T ss_pred CchHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7888899999999999999998877744
No 315
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=21.33 E-value=8e+02 Score=24.22 Aligned_cols=68 Identities=19% Similarity=0.250 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHhhcc-CChhHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhc
Q psy17650 93 KAKDVYLQKCEELDKLRRDN-GSAKDLEKAELKVKKAQEDYKTI---VDKYALIKEDFEKRMSTSCKIRNDD 160 (396)
Q Consensus 93 KaKk~Y~~~CkE~E~lrke~-~s~KeieKa~~K~kKA~e~Yk~~---v~kye~~r~~wE~~m~~~cq~Fqd~ 160 (396)
.-|+.|+..--.++.+.++. .--++++.++.+++-.++..+.. .-+++.+......+..+--.+|+++
T Consensus 132 d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~EL 203 (290)
T COG4026 132 DLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDEL 203 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHh
Confidence 45555543222255444332 23345555566655555443332 2223444444444444444444443
No 316
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=21.22 E-value=1e+03 Score=25.32 Aligned_cols=37 Identities=14% Similarity=0.319 Sum_probs=29.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVC 57 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~ 57 (396)
-|.--+.|-||-.|+-+||+-=.+-+..+.++++.+.
T Consensus 387 AGE~GrGFAVVA~EVr~LA~~t~~st~~I~~~i~~~~ 423 (553)
T PRK15048 387 AGEQGRGFAVVAGEVRNLASRSAQAAKEIKALIEDSV 423 (553)
T ss_pred cccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777889999999999888888888877776543
No 317
>PF04642 DUF601: Protein of unknown function, DUF601; InterPro: IPR006736 This family consists of several uncharacterised plant proteins which share a conserved region.
Probab=21.17 E-value=5.7e+02 Score=25.61 Aligned_cols=15 Identities=13% Similarity=0.222 Sum_probs=7.1
Q ss_pred hHHHHHHHHHHHHHH
Q psy17650 127 KAQEDYKTIVDKYAL 141 (396)
Q Consensus 127 KA~e~Yk~~v~kye~ 141 (396)
++..++..|-+++..
T Consensus 256 q~raeL~acEEkl~k 270 (311)
T PF04642_consen 256 QARAELNACEEKLKK 270 (311)
T ss_pred HHHHHHHHHHHHHhc
Confidence 344455555555433
No 318
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=21.09 E-value=8.8e+02 Score=24.61 Aligned_cols=23 Identities=13% Similarity=0.354 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhh
Q psy17650 48 KVNDLVKDVCKYTEELQKKHKLV 70 (396)
Q Consensus 48 kL~EliK~l~~f~eeQkk~hKk~ 70 (396)
++.++...+..++.+....|.++
T Consensus 159 ~~~el~aei~~lk~~~~e~~eki 181 (294)
T COG1340 159 KLKELKAEIDELKKKAREIHEKI 181 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555554
No 319
>PRK01770 sec-independent translocase; Provisional
Probab=20.95 E-value=2.7e+02 Score=26.03 Aligned_cols=33 Identities=9% Similarity=0.127 Sum_probs=24.3
Q ss_pred HHHHHHHHHhCC-CCChHHHHHHHHHHHHHHHHH
Q psy17650 9 KLFGKLAKQSGG-SGTFAPLWQVLKTSIEKIATV 41 (396)
Q Consensus 9 KsL~KLAKka~~-~GTl~~sW~~lk~e~Ekla~~ 41 (396)
+.|=+++|..+. +|.|+.++..++.++++...+
T Consensus 23 erLP~~~r~lg~~i~~~R~~~~~~k~e~~~E~~~ 56 (171)
T PRK01770 23 QRLPVAVKTVAGWIRALRSLATTVQNELTQELKL 56 (171)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 455666776666 888899999999887776643
No 320
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=20.85 E-value=9.7e+02 Score=25.01 Aligned_cols=35 Identities=9% Similarity=0.294 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 24 FAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCK 58 (396)
Q Consensus 24 l~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~ 58 (396)
....++||..-+..+-..=.+|-..+.++......
T Consensus 239 ~~e~l~Vl~~Da~El~~V~~el~~~~~~~~~~~~~ 273 (412)
T PF04108_consen 239 RQEMLEVLENDAQELPDVVKELQERLDEMENNEER 273 (412)
T ss_pred HHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999988888887777776666555544444
No 321
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=20.80 E-value=3.5e+02 Score=27.39 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 132 YKTIVDKYALIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 132 Yk~~v~kye~~r~~wE~~m~~~cq~Fqd 159 (396)
....-.++.+||.|| +.+-|.+.|.
T Consensus 91 I~eLksQL~RMrEDW---IEEECHRVEA 115 (305)
T PF15290_consen 91 IDELKSQLARMREDW---IEEECHRVEA 115 (305)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 455556789999999 4467777765
No 322
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=20.12 E-value=1.1e+03 Score=25.53 Aligned_cols=76 Identities=17% Similarity=0.229 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAEL---KVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDR 161 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~---K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E 161 (396)
|..+.....-|..+-..|.|.|+.-. .-..+|+.++. +++||. ..+.+.+-+=+.--|++...--..||.-|
T Consensus 431 QEry~~eiQqKnksvsqclEmdk~Ls--kKeeeverLQ~lkgelEkat---~SALdlLkrEKe~~EqefLslqeEfQk~e 505 (527)
T PF15066_consen 431 QERYMTEIQQKNKSVSQCLEMDKTLS--KKEEEVERLQQLKGELEKAT---TSALDLLKREKETREQEFLSLQEEFQKHE 505 (527)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444445555556666666421 12234555443 344443 22333332222223344444445566644
Q ss_pred ccch
Q psy17650 162 DHKI 165 (396)
Q Consensus 162 ~~Ri 165 (396)
.+++
T Consensus 506 kenl 509 (527)
T PF15066_consen 506 KENL 509 (527)
T ss_pred HhhH
Confidence 4444
No 323
>KOG0612|consensus
Probab=20.07 E-value=1.6e+03 Score=27.33 Aligned_cols=73 Identities=18% Similarity=0.208 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhhccccc
Q psy17650 92 QKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDF-----EKRMSTSCKIRNDDRDHK 164 (396)
Q Consensus 92 ~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~w-----E~~m~~~cq~Fqd~E~~R 164 (396)
++++..-..+-.++++...+-.+..+.+-++.+++.....|.+.+++.+.-+..- |..|.+.-+.+-+++.-|
T Consensus 639 ~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~~L~~~e~~~~e~~~~lseek~ar 716 (1317)
T KOG0612|consen 639 LKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRLRLQDKEAQMKEIESKLSEEKSAR 716 (1317)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccccHH
Confidence 4445544455555333332222333332355566555555555544442222221 445555555554444444
Done!