Query psy17650
Match_columns 396
No_of_seqs 184 out of 308
Neff 5.5
Searched_HMMs 29240
Date Fri Aug 16 19:31:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v0o_A FCHO2, FCH domain only 100.0 8.2E-33 2.8E-37 263.4 17.7 197 1-198 45-252 (276)
2 3m3w_A Pacsin3, protein kinase 100.0 2E-29 6.8E-34 248.2 10.6 198 1-199 47-281 (320)
3 3abh_A Pacsin2, protein kinase 100.0 1.9E-28 6.6E-33 238.5 16.8 198 1-199 56-290 (312)
4 3aco_A Pacsin2, protein kinase 100.0 1E-28 3.6E-33 244.7 12.0 198 1-199 56-290 (350)
5 3i2w_A Syndapin, LD46328P; EFC 100.0 2.7E-28 9.2E-33 235.2 11.6 198 1-199 35-268 (290)
6 2x3v_A Syndapin I, protein kin 99.9 1.9E-27 6.5E-32 233.8 16.3 198 1-199 47-281 (337)
7 3haj_A Human pacsin2 F-BAR; pa 99.9 2.9E-27 9.9E-32 244.8 16.8 198 1-199 49-283 (486)
8 2efl_A Formin-binding protein 99.9 1.7E-26 5.7E-31 222.2 19.1 194 1-198 41-269 (305)
9 2efk_A CDC42-interacting prote 99.9 2.3E-26 7.8E-31 221.5 18.5 195 1-199 34-263 (301)
10 4dyl_A Tyrosine-protein kinase 99.9 4.5E-25 1.5E-29 223.9 17.9 196 1-200 39-263 (406)
11 3g9g_A Suppressor of yeast pro 99.7 1.2E-18 4E-23 169.9 4.4 155 1-199 70-260 (287)
12 3qwe_A GMIP, GEM-interacting p 99.5 1.4E-13 4.8E-18 133.5 17.8 156 1-159 41-220 (279)
13 3g9h_A Suppressor of yeast pro 99.5 1.3E-16 4.6E-21 157.2 -3.5 69 323-396 67-135 (328)
14 1zww_A SH3-containing GRB2-lik 95.2 1.3 4.6E-05 41.4 18.1 49 91-139 154-204 (256)
15 2z0v_A SH3-containing GRB2-lik 94.9 1.8 6.1E-05 40.1 18.0 112 5-140 75-189 (240)
16 3abh_A Pacsin2, protein kinase 94.4 1.1 3.6E-05 42.7 15.2 26 114-139 204-229 (312)
17 2efk_A CDC42-interacting prote 94.2 0.68 2.3E-05 43.5 13.4 8 120-127 183-190 (301)
18 3haj_A Human pacsin2 F-BAR; pa 93.0 0.91 3.1E-05 46.5 12.8 13 119-131 202-214 (486)
19 2efl_A Formin-binding protein 92.7 2.1 7.1E-05 40.0 13.9 7 140-146 189-195 (305)
20 4dyl_A Tyrosine-protein kinase 92.6 1.1 3.9E-05 44.7 12.7 18 91-108 166-183 (406)
21 2ykt_A Brain-specific angiogen 92.2 2 6.7E-05 40.8 13.0 41 130-170 162-202 (253)
22 3ok8_A Brain-specific angiogen 91.7 5.7 0.00019 37.0 15.3 34 136-169 157-190 (222)
23 2q12_A DIP13 alpha, DCC-intera 91.5 8.1 0.00028 35.9 16.4 43 22-64 80-123 (265)
24 2d1l_A Metastasis suppressor p 90.8 10 0.00034 36.0 16.3 37 132-168 169-205 (253)
25 2x3v_A Syndapin I, protein kin 90.4 6.9 0.00024 37.4 15.2 23 126-148 186-208 (337)
26 1i4d_A Arfaptin 2, partner of 89.2 9.1 0.00031 35.7 14.3 114 32-167 62-176 (224)
27 2v71_A Nuclear distribution pr 88.6 12 0.0004 34.1 14.1 110 46-161 23-136 (189)
28 1uru_A Amphiphysin; endocytosi 87.9 6.9 0.00024 35.4 12.5 23 117-139 167-189 (244)
29 3i2w_A Syndapin, LD46328P; EFC 87.6 3.6 0.00012 38.5 10.7 26 114-139 182-207 (290)
30 2v0o_A FCHO2, FCH domain only 87.4 11 0.00039 34.5 13.9 20 120-139 174-193 (276)
31 2q13_A DCC-interacting protein 85.5 18 0.00062 35.3 14.9 40 24-63 82-122 (385)
32 4h8s_A DCC-interacting protein 84.2 28 0.00094 34.2 15.6 40 25-64 106-146 (407)
33 3oja_A Leucine-rich immune mol 81.4 19 0.00065 36.0 13.5 37 6-43 302-338 (487)
34 3m3w_A Pacsin3, protein kinase 75.7 17 0.00058 34.8 10.6 23 117-139 198-220 (320)
35 3na7_A HP0958; flagellar bioge 75.1 46 0.0016 30.9 13.1 22 177-198 175-196 (256)
36 4akv_A Sorting nexin-33; trans 71.4 82 0.0028 31.1 17.5 42 21-62 248-290 (386)
37 3caz_A BAR protein; thermo-aci 71.0 64 0.0022 29.6 15.4 66 84-149 117-183 (294)
38 2fic_A Bridging integrator 1; 65.7 29 0.00099 31.6 9.3 57 83-139 138-202 (251)
39 2fic_A Bridging integrator 1; 65.5 79 0.0027 28.6 17.7 31 116-146 186-216 (251)
40 3dyt_A Sorting nexin-9; 3-heli 63.8 1.1E+02 0.0038 29.7 17.8 25 24-48 231-255 (366)
41 2dfs_A Myosin-5A; myosin-V, in 62.9 22 0.00075 40.2 9.3 22 121-142 996-1017(1080)
42 3dyt_A Sorting nexin-9; 3-heli 59.6 1.3E+02 0.0044 29.3 13.3 42 22-63 200-252 (366)
43 3vkg_A Dynein heavy chain, cyt 57.1 1.9E+02 0.0065 36.7 16.6 49 21-70 1901-1950(3245)
44 3frt_A Charged multivesicular 55.2 67 0.0023 29.6 9.7 116 36-151 10-131 (218)
45 1uru_A Amphiphysin; endocytosi 53.5 1.2E+02 0.0042 26.9 11.2 33 114-146 171-203 (244)
46 3iox_A AGI/II, PA; alpha helix 49.5 69 0.0024 33.1 9.5 12 93-104 27-38 (497)
47 3u1c_A Tropomyosin alpha-1 cha 48.0 1.1E+02 0.0036 24.6 11.1 33 76-108 2-35 (101)
48 3twe_A Alpha4H; unknown functi 44.2 20 0.00068 22.0 2.8 22 50-71 4-25 (27)
49 4g3b_A Alpha4F3D; alpha helix, 42.6 22 0.00076 21.6 2.8 21 50-70 4-24 (26)
50 3vkg_A Dynein heavy chain, cyt 41.6 3.6E+02 0.012 34.3 15.5 35 89-129 2042-2076(3245)
51 3oja_A Leucine-rich immune mol 40.2 1.4E+02 0.0048 29.6 10.2 48 97-144 422-470 (487)
52 3vem_A Helicase protein MOM1; 39.9 1.5E+02 0.0053 24.7 8.5 31 28-58 41-72 (115)
53 3vjz_A DMP19, putative unchara 39.4 1.3E+02 0.0043 26.7 8.5 73 76-151 80-157 (166)
54 2f1m_A Acriflavine resistance 39.3 2.2E+02 0.0074 25.7 10.7 54 87-140 65-122 (277)
55 2v71_A Nuclear distribution pr 35.8 2.5E+02 0.0084 25.3 14.7 30 80-109 89-118 (189)
56 2v66_B Nuclear distribution pr 34.5 2E+02 0.0067 23.8 13.1 58 44-108 7-64 (111)
57 4dk0_A Putative MACA; alpha-ha 30.0 2.1E+02 0.0072 26.9 9.2 55 89-143 84-142 (369)
58 3ilw_A DNA gyrase subunit A; D 29.9 4.6E+02 0.016 26.8 12.0 51 112-162 412-465 (470)
59 2inr_A DNA topoisomerase 4 sub 28.3 3E+02 0.01 28.5 10.4 53 113-165 451-506 (514)
60 3mq9_A Bone marrow stromal ant 27.4 4.5E+02 0.015 25.7 13.0 43 21-63 347-389 (471)
61 3ghg_A Fibrinogen alpha chain; 26.6 5.7E+02 0.019 26.7 12.1 17 178-194 173-189 (562)
62 3lnn_A Membrane fusion protein 25.7 2.8E+02 0.0097 25.9 9.2 58 88-145 97-158 (359)
63 4fla_A Regulation of nuclear P 25.0 1.1E+02 0.0037 26.6 5.5 10 97-106 76-85 (152)
64 4akv_A Sorting nexin-33; trans 24.0 5.1E+02 0.017 25.2 14.0 17 23-39 221-237 (386)
65 3fpp_A Macrolide-specific effl 23.7 3.2E+02 0.011 25.3 9.1 52 91-142 85-140 (341)
66 4avm_A Bridging integrator 2; 23.3 4.2E+02 0.014 24.0 9.8 139 5-153 57-204 (237)
67 2v66_B Nuclear distribution pr 23.1 3.2E+02 0.011 22.5 11.8 71 85-161 13-83 (111)
68 1qey_A MNT-C, protein (regulat 20.7 1.8E+02 0.006 18.8 4.3 24 33-56 2-26 (31)
No 1
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=100.00 E-value=8.2e-33 Score=263.38 Aligned_cols=197 Identities=42% Similarity=0.610 Sum_probs=184.8
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCch
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPT 77 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~ 77 (396)
|.||+.|||.|.+||+++.+ +|||..+|+.|+.++|++|.+|.++++.|++++++|..|.+++++.||+++++++++
T Consensus 45 a~iE~eYak~L~kLa~~~~~~~~~gs~~~~w~~~~~~~e~~a~~h~~~a~~l~~~~~~l~~~~~~~~~~rK~~~~~~~~~ 124 (276)
T 2v0o_A 45 ATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQKYGEEQVKSHKKTKEEVAGT 124 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCCSSSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 57999999999999999966 999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 78 LEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIR 157 (396)
Q Consensus 78 ~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~F 157 (396)
.++++.|+.....+.|+|+.|+++|+++|++++++.++++++|++.|+++|.++|..+|.+|+..+.+|+..|...|+.|
T Consensus 125 ~~~~~~~~~~~~~l~Kak~~Y~~~c~e~e~~~~~~~s~k~~eK~~~k~~ka~~~Y~~~v~~~n~~~~~~~~~~~~~~~~l 204 (276)
T 2v0o_A 125 LEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQREIEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKF 204 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred hhccccchhhhhccCCC--------CCcchHhHHHHHHHhhcccccCCc
Q psy17650 158 NDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAGNLTLSPL 198 (396)
Q Consensus 158 qd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIeni~v~~~ 198 (396)
|+.|++|+. .++.+++ .++.+.+++++|+.+|++|+++..
T Consensus 205 Q~le~~R~~-~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~D 252 (276)
T 2v0o_A 205 QDIEETHLI-HIKEIIGSLSNAIKEIHLQIGQVHEEFINNMANTTVESL 252 (276)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhCCHHHH
Confidence 999999996 5666663 245777899999999999998865
No 2
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=99.96 E-value=2e-29 Score=248.23 Aligned_cols=198 Identities=12% Similarity=0.177 Sum_probs=164.9
Q ss_pred ChhhHHHHHHHHHHHHHh-----CC--CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh-----hh
Q psy17650 1 ANIEENNSKLFGKLAKQS-----GG--SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQK-----KH 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka-----~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk-----~h 67 (396)
|.||+.|||.|.+||++| .+ +|||..+|+.|+.++|.+|.+|..++..|. +++++|..|.++..+ .+
T Consensus 47 a~iE~~Yak~L~kLakk~~~~~~~~~e~gsl~~aw~~i~~e~e~~a~~H~~~a~~l~~~v~~~l~~~~k~~~~k~~~~~~ 126 (320)
T 3m3w_A 47 ARIEKAYAQQLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPDSERVRTWQRGAFHRPVLGGF 126 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTC-----CC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 579999999999999974 12 999999999999999999999999999995 788999999987611 12
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-cCChhHHHHHHHH-------HHhHHHHH
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-------D-NGSAKDLEKAELK-------VKKAQEDY 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------e-~~s~KeieKa~~K-------~kKA~e~Y 132 (396)
|..|+.++++.++++.|+..++.+.|+|+.|++.|++.+.++. + ++++++++|++.| +.+|.++|
T Consensus 127 ke~K~~~~~~~k~qk~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~~~~d~~~s~ke~~K~~~k~~k~~~~~~~a~~~Y 206 (320)
T 3m3w_A 127 RASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKTAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQY 206 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCC---CCSSSSSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335556678899999999999999999999999999666542 1 4577888876554 45577899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC---------CCcchHhHHHHHHHhhcccccCCcc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA---------NTNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~---------~~~~~~as~eELr~sIeni~v~~~~ 199 (396)
..+|.+|+..+..|+++|...|+.||++|++||. +++.+++ ++..++++|++|+.+|++|+++...
T Consensus 207 ~~~l~~~n~~~~~y~~~~~~~~~~~Q~lEe~Ri~-~lk~~l~~~~~~~~~~~~~~~~~~~e~~~~~i~~id~~~Di 281 (320)
T 3m3w_A 207 EQTLAELNRYTPRYMEDMEQAFESCQAAERQRLL-FFKDVLLTLHQHLDLSSSDKFHELHRDLQQSIEAASDEEDL 281 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGCHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHHHhcCHHHHH
Confidence 9999999999999999999999999999999996 5666653 1467889999999999999999764
No 3
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=99.96 E-value=1.9e-28 Score=238.53 Aligned_cols=198 Identities=14% Similarity=0.177 Sum_probs=168.5
Q ss_pred ChhhHHHHHHHHHHHHHhC-----C--CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-----h
Q psy17650 1 ANIEENNSKLFGKLAKQSG-----G--SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKK-----H 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~-----~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~-----h 67 (396)
|.||+.|||.|.+||+++. + +|||..+|+.|+.++|++|.+|.++++.|. +++++|..|.+++.++ +
T Consensus 56 a~iE~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~i~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~~~~~k~~~~~~ 135 (312)
T 3abh_A 56 ARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGF 135 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCTTSSB
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5799999999999999884 3 999999999999999999999999999995 7889999999986321 2
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccCChhHHHHHHHHHH-------hHHHHH
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR--------DNGSAKDLEKAELKVK-------KAQEDY 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk--------e~~s~KeieKa~~K~k-------KA~e~Y 132 (396)
|..|+.++.+.++++.|++.+..+.|+|+.|+++|++.|+++. .++++++++|++.|+. +|.++|
T Consensus 136 ke~k~~~~~~~k~~k~~~~~~~~l~KaK~~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y 215 (312)
T 3abh_A 136 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKY 215 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHTCTTCCSHHHHGGGTTTTSHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224445567889999999999999999999999999999864 2367899998666554 467789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC-------C--CcchHhHHHHHHHhhcccccCCcc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA-------N--TNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~-------~--~~~~~as~eELr~sIeni~v~~~~ 199 (396)
...|.+|+..+..|+++|...|+.||+.|++||. .+|.+++ . .+.+..++++|+.+|++|+++...
T Consensus 216 ~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~-~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~id~~~Di 290 (312)
T 3abh_A 216 EKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLR-FFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDL 290 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGSTTHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999999999999999999999996 4665542 1 347889999999999999998753
No 4
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.70A {Homo sapiens}
Probab=99.95 E-value=1e-28 Score=244.74 Aligned_cols=198 Identities=14% Similarity=0.184 Sum_probs=169.4
Q ss_pred ChhhHHHHHHHHHHHHHhC-----C--CCChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhh-----h
Q psy17650 1 ANIEENNSKLFGKLAKQSG-----G--SGTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQKK-----H 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~-----~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQkk~-----h 67 (396)
|.||+.|||.|.+||+++. + +|||..+|+.|+.++|++|.+|.++++.|. +++++|..|.+++.++ +
T Consensus 56 a~IE~eYak~L~kLakk~~~~~~~~~e~gtl~~aw~~l~~e~e~~a~~H~~la~~L~~~v~~~l~~~~~e~~~k~~~~~~ 135 (350)
T 3aco_A 56 ARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGF 135 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTTSCBCTTSSB
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 5799999999999999874 3 999999999999999999999999999995 8889999999885211 2
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccCChhHHHHHHHHHHh-------HHHHH
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR--------DNGSAKDLEKAELKVKK-------AQEDY 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk--------e~~s~KeieKa~~K~kK-------A~e~Y 132 (396)
|+.|+.++.+.++++.|+..+..+.|+|+.|+++|++.|.++. .++++++++|++.|+.| |.++|
T Consensus 136 ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~d~~~~~k~~eK~~~k~~k~~~~~~~a~~~Y 215 (350)
T 3aco_A 136 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKY 215 (350)
T ss_dssp HHHHHHHHHHHHHTSHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHTTSSSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224445567888999999999999999999999999999874 13578999998888776 56789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC--------CC-cchHhHHHHHHHhhcccccCCcc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------NT-NQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~~-~~~~as~eELr~sIeni~v~~~~ 199 (396)
..+|.+|+..+..|+++|...|+.||+.|++||. .+|.+++ .+ ..+..++++|+.+|++|++....
T Consensus 216 ~~~v~~~n~~~~~~~~~~~~~~~~~Q~lee~Rl~-~lk~~l~~~~~~l~~~~~~~~~~~~~~l~~~i~~id~~~Di 290 (350)
T 3aco_A 216 EKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLR-FFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDL 290 (350)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCSTTCHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999986 4666543 23 46888999999999999998754
No 5
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=99.95 E-value=2.7e-28 Score=235.22 Aligned_cols=198 Identities=18% Similarity=0.229 Sum_probs=160.7
Q ss_pred ChhhHHHHHHHHHHHHHh-----CC--CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh----hhh
Q psy17650 1 ANIEENNSKLFGKLAKQS-----GG--SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQK----KHK 68 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka-----~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk----~hK 68 (396)
|.||+.||+.|.+|++++ ++ +|||..+|+.|+.++|.+|..|.+++..| .+++.+|..|.+++.+ .+|
T Consensus 35 a~iE~~Yak~L~kL~~~~~~~~~~~~~~gs~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~e~~~k~~~~~k 114 (290)
T 3i2w_A 35 ADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDVNSQIKTWQKENYHHTLMQIK 114 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCEETTEEH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhHH
Confidence 579999999999999975 22 99999999999999999999999999999 6899999999998731 123
Q ss_pred hhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-cCChhHHHHHHHH-------HHhHHHHHH
Q psy17650 69 LVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-------D-NGSAKDLEKAELK-------VKKAQEDYK 133 (396)
Q Consensus 69 k~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------e-~~s~KeieKa~~K-------~kKA~e~Yk 133 (396)
..|+.++++.++++.|+..++.+.|||+.|++.|++.+.++. + ++++++++|++.| +.+|.++|.
T Consensus 115 erK~~~~~~~k~~k~~~~~~~~l~kaKk~Y~~~c~e~~~a~~~~~~a~~~~~~s~k~~~K~~~k~~k~~~~~~~a~~~Y~ 194 (290)
T 3i2w_A 115 ERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYE 194 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC--------------------CTTSSTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445678899999999999999999999999999877652 1 3578998886654 677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC--------C-CcchHhHHHHHHHhhcccccCCcc
Q psy17650 134 TIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------N-TNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 134 ~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~-~~~~~as~eELr~sIeni~v~~~~ 199 (396)
.+|..++..+.+|+.+|...|+.||++|++||. .++.+++ . ...+.++|++|+.+|++|+++...
T Consensus 195 ~~v~~~n~~~~~~~~~~p~~~~~~Q~lee~Ri~-~lk~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~id~~~Di 268 (290)
T 3i2w_A 195 QAIAEITKYNSVYIEDMTSVFEKCQTFEKTRLQ-FFKEILFNVHSCLDLTKVQSLPQIYEEFSHTINNADQQKDL 268 (290)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGCTTHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhcChHHHH
Confidence 999999999999999999999999999999996 5666653 1 236779999999999999999864
No 6
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=99.95 E-value=1.9e-27 Score=233.83 Aligned_cols=198 Identities=17% Similarity=0.219 Sum_probs=168.8
Q ss_pred ChhhHHHHHHHHHHHHHhC-----C--CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-----h
Q psy17650 1 ANIEENNSKLFGKLAKQSG-----G--SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKK-----H 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~-----~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~-----h 67 (396)
|.||+.|||.|.+||+++. + +|||..+|+.|+.++|++|.+|.++++.| .+++++|..|.+++.++ +
T Consensus 47 a~iE~eYak~L~kLakk~~~~~~~~~~~gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~k~~~~~~ 126 (337)
T 2x3v_A 47 AKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNEDLEKVKNWQKDAYHKQIMGGF 126 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSCSB
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 5799999999999999874 2 99999999999999999999999999999 67999999999987432 3
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-cCChhHHHHHHHHHHh-------HHHHH
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-------D-NGSAKDLEKAELKVKK-------AQEDY 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------e-~~s~KeieKa~~K~kK-------A~e~Y 132 (396)
|+.|+.++++.++++.|+..+..+.|+|+.|+++|++.|.++. + +.++++++|++.|+.+ |.++|
T Consensus 127 ke~K~~~~~~~k~~k~~~~~~~~l~KaKk~Y~~~c~e~e~a~~~~~~~~~~~~~s~k~~eK~~~k~~k~~~~~~~a~~~Y 206 (337)
T 2x3v_A 127 KETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERLAMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKY 206 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhccccCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555678899999999999999999999999999886642 2 3688999988777654 56789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC--------C-CcchHhHHHHHHHhhcccccCCcc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------N-TNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~-~~~~~as~eELr~sIeni~v~~~~ 199 (396)
+.+|..++..+..|+..|...|+.||+.|++||. .++.+++ . .+.+.+++++|+.+|++|++....
T Consensus 207 ~~~v~~~n~~~~~~~~~~~~~~~~~Q~le~~Rl~-~lk~~l~~~~~~~~~~~~~~~~~~~~~l~~~i~~id~~~Di 281 (337)
T 2x3v_A 207 EKVLEDVGKTTPQYMEGMEQVFEQCQQFEEKRLV-FLKEVLLDIKRHLNLAENSSYMHVYRELEQAIRGADAQEDL 281 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCGGGSTHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHcChHHHH
Confidence 9999999999999999999999999999999986 4555552 1 236788999999999999998753
No 7
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=99.95 E-value=2.9e-27 Score=244.82 Aligned_cols=198 Identities=15% Similarity=0.191 Sum_probs=169.5
Q ss_pred ChhhHHHHHHHHHHHHHh-----CC--CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhh-----h
Q psy17650 1 ANIEENNSKLFGKLAKQS-----GG--SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKK-----H 67 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka-----~~--~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~-----h 67 (396)
|.||+.|||.|.||++++ .+ +|||..+|+.|+.++|++|.+|++++..| .+++++|..|.+++.++ +
T Consensus 49 a~iE~eYAk~L~kLakk~~~~~~~~~e~gtl~~aw~~~~~e~e~~a~~H~~~a~~L~~~v~~~l~~~~~e~~~K~~~~~~ 128 (486)
T 3haj_A 49 ARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDDFEKIKNWQKEAFHKQMMGGF 128 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCCBCSSSSB
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhhHH
Confidence 579999999999999975 33 99999999999999999999999999999 68999999999987221 1
Q ss_pred hhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ccCChhHHHHHHHHHHhHH-------HHH
Q psy17650 68 KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR--------DNGSAKDLEKAELKVKKAQ-------EDY 132 (396)
Q Consensus 68 Kk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk--------e~~s~KeieKa~~K~kKA~-------e~Y 132 (396)
|..|+.++.+.++++.|+..++.+.|+|+.|+++|+|.+.++. .++++|+++|++.|++|+. ++|
T Consensus 129 kerK~~~~~~~k~qk~l~~~~~~l~KaKk~Y~~~cke~e~a~~~~~~a~~d~~~t~k~~eK~~~k~~k~~~~~~~a~~~Y 208 (486)
T 3haj_A 129 KETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKLAISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKY 208 (486)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233344568899999999999999999999999999988742 2468899999988887764 789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCC--------CCc-chHhHHHHHHHhhcccccCCcc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------NTN-QISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~~~-~~~as~eELr~sIeni~v~~~~ 199 (396)
+.+|.+|+..+..|+.+|...|+.||++|++||. .+|..++ .+. .+.++|++|+.+|++|++....
T Consensus 209 ~~~v~~~n~~~~~y~~~~~~~~~~lQ~lEeeRi~-~lK~~L~~y~~~l~~~~~~~~~~~~e~l~~~i~~id~~~Di 283 (486)
T 3haj_A 209 EKSLKELDQGTPQYMENMEQVFEQCQQFEEKRLR-FFREVLLEVQKHLDLSNVAGYKAIYHDLEQSIRAADAVEDL 283 (486)
T ss_dssp HHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHhCCHHHHH
Confidence 9999999999999999999999999999999996 4666653 132 4789999999999999998853
No 8
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=99.94 E-value=1.7e-26 Score=222.19 Aligned_cols=194 Identities=18% Similarity=0.255 Sum_probs=172.4
Q ss_pred ChhhHHHHHHHHHHHHHhCC----------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG----------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKL 69 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~----------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk 69 (396)
|.||+.|||+|.|||+++.+ .||+..+|+.|+.++|++|.+|.+++..| .+++++|..|.+++++.||+
T Consensus 41 a~iE~eYak~L~kLa~~~~~~~~~~~~~~~~~t~~~aw~~~~~~~e~~a~~h~~~a~~l~~~v~~~l~~~~~~~~~~rK~ 120 (305)
T 2efl_A 41 TEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMASQIIVDLARYVQELKQERKS 120 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccccCccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999854 47999999999999999999999999999 78999999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------c-cCChhHHHHHHHHH-------HhHHHHHHH
Q psy17650 70 VKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR-------D-NGSAKDLEKAELKV-------KKAQEDYKT 134 (396)
Q Consensus 70 ~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------e-~~s~KeieKa~~K~-------kKA~e~Yk~ 134 (396)
+++. ..++++.|+..+..+.|+|+.|+++|++.|+++. + +.++++++|++.++ .+|.++|+.
T Consensus 121 ~~~~---~~k~~k~~~~~~~~l~KaK~~Y~~~~~e~e~a~~~~~~~~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~ 197 (305)
T 2efl_A 121 NFHD---GRKAQQHIETCWKQLESSKRRFERDCKEADRAQQYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSS 197 (305)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8764 5789999999999999999999999999998864 2 46888999988774 667789999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhccccchhhhhccCCC--------CCcchHhHHHHHHHhhcccccCCc
Q psy17650 135 IVDKYALI-KEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAGNLTLSPL 198 (396)
Q Consensus 135 ~v~kye~~-r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIeni~v~~~ 198 (396)
+|..++.. +..|+..|...|+.||+.|++|+. .++.++. .++.+..++++|+..+++|++...
T Consensus 198 ~v~~~n~~~~~~~~~~~~~~~~~lQ~le~~r~~-~lk~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~id~~~D 269 (305)
T 2efl_A 198 ILQKFNHEQHEYYHTHIPNIFQKIQEMEERRIV-RMGESMKTYAEVDRQVIPIIGKCLDGIVKAAESIDQKND 269 (305)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCchhh
Confidence 99999998 899999999999999999999996 5777764 234667899999999999988865
No 9
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=99.94 E-value=2.3e-26 Score=221.47 Aligned_cols=195 Identities=14% Similarity=0.212 Sum_probs=170.9
Q ss_pred ChhhHHHHHHHHHHHHHhCC----------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG----------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKL 69 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~----------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk 69 (396)
|.||+.|||.|.|||+++.+ .||+..+|+.|+.++|++|..|.+++..| .+++++|..|.+++++.||+
T Consensus 34 a~iE~eYak~L~kLakk~~~~~~~~~~~~~~~t~~~~w~~~l~~~e~~a~~h~~~a~~L~~~v~~~l~~~~~~~~~~rK~ 113 (301)
T 2efk_A 34 TEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQRELVAENLSVRVCLELTKYSQEMKQERKM 113 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-------CTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999843 45999999999999999999999999999 68899999999999999999
Q ss_pred hhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--------cCChhHHHHHHHHHH-------hHHHHHHH
Q psy17650 70 VKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD--------NGSAKDLEKAELKVK-------KAQEDYKT 134 (396)
Q Consensus 70 ~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke--------~~s~KeieKa~~K~k-------KA~e~Yk~ 134 (396)
+++ .+.++++.|+..+..+.|||+.|++.|++.|+++.. +.+.++++|++.|+. +|.++|..
T Consensus 114 ~~~---~~~k~~k~~~~~~~~l~KaKk~Y~~~~~e~e~a~~~~~~a~~~~~~s~~~~eK~~~k~~~~~~~~~~a~~~Y~~ 190 (301)
T 2efk_A 114 HFQ---EGRRAQQQLENGFKQLENSKRKFERDCREAEKAAQTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAA 190 (301)
T ss_dssp HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 875 477899999999999999999999999999987642 457789999887765 46789999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHhhccccchhhhhccCCCC--------CcchHhHHHHHHHhhcccccCCcc
Q psy17650 135 IVDKYALI-KEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSAN--------TNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 135 ~v~kye~~-r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~~--------~~~~~as~eELr~sIeni~v~~~~ 199 (396)
+|..++.. +..|+..|...|+.||+++++|+. .++.++.. ...+..++++|+.+|++|++....
T Consensus 191 ~v~~~n~~~~~~~~~~~p~~~~~lQ~lee~r~~-~lk~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~id~~~D~ 263 (301)
T 2efk_A 191 QLQRFNRDQAHFYFSQMPQIFDKLQDMDERRAT-RLGAGYGLLSEAELEVVPIIAKCLEGMKVAANAVDPKNDS 263 (301)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhH
Confidence 99999999 779999999999999999999986 56666641 235678899999999999998753
No 10
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=99.93 E-value=4.5e-25 Score=223.93 Aligned_cols=196 Identities=14% Similarity=0.164 Sum_probs=161.6
Q ss_pred ChhhHHHHHHHHHHHHHhCC--------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhh
Q psy17650 1 ANIEENNSKLFGKLAKQSGG--------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVK 71 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~--------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~k 71 (396)
|.||+.|||.|.+|||+|.+ .||+..+|.+|+.++|++|.+|..++..| .+++.+|..|.++..+.||+..
T Consensus 39 A~IE~eYAk~L~kLakk~~~k~~~~~~~~~tl~~aW~~ll~ete~~a~~H~~lae~L~~~v~~~l~~~~ke~~~~rK~~~ 118 (406)
T 4dyl_A 39 VKSDREYAGLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEGLSRLLRQHAEDLNSGPLSKLSLLIRERQQLRKTYS 118 (406)
T ss_dssp HHHHHHHHHHHHHHC------------CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999864 48999999999999999999999999999 5888999999999888888876
Q ss_pred hccCchHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhhc---cCChhHHHHHHHHHHhHHH-------HHHHHHHHHH
Q psy17650 72 EEQGPTLEIVQTIQSTT-LVLQKAKDVYLQKCEELDKLRRD---NGSAKDLEKAELKVKKAQE-------DYKTIVDKYA 140 (396)
Q Consensus 72 e~~~~~~ea~k~~q~~~-~~l~KaKk~Y~~~CkE~E~lrke---~~s~KeieKa~~K~kKA~e-------~Yk~~v~kye 140 (396)
+ .+.++++.|.+.+ +.|.|+|+.|++.|++.|.++.. ...+++++|++.|++++.. +|..+|..++
T Consensus 119 ~---~~~klqk~~~k~~~~~lekaKk~Y~~~cke~e~A~~k~~~~~k~ke~eK~~~k~~k~~~~~~~a~neY~~~l~~~N 195 (406)
T 4dyl_A 119 E---QWQQLQQELTKTHSQDIEKLKSQYRALARDSAQAKRKYQEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQ 195 (406)
T ss_dssp H---HHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 4678999999999 89999999999999999998752 2345888998888877654 8999999999
Q ss_pred HHHHH-HHHHHHHHHHHHhhccccchhhhhccCCC--------CCcchHhHHHHHHHhhcccccCCccc
Q psy17650 141 LIKED-FEKRMSTSCKIRNDDRDHKIHVEIKPLSA--------NTNQISASVDELRVTAGNLTLSPLSV 200 (396)
Q Consensus 141 ~~r~~-wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~--------~~~~~~as~eELr~sIeni~v~~~~~ 200 (396)
..+.. |...|-..|+.||++|++||. .++.+++ .++.+..++++|+.+|++|++.....
T Consensus 196 ~~~~~yy~~~lp~~~d~lQ~lEe~Ri~-~lk~~L~~~~~~~~~~~~~~~~~~~~l~~~i~~id~~~D~~ 263 (406)
T 4dyl_A 196 LHHQHHHQLLLPGLLRSLQDLHEEMAC-ILKEILQEYLEISSLVQDEVVAIHREMAAAAARIQPEAEYQ 263 (406)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHCCGGGTTH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 99888 666788889999999999996 5676664 24577789999999999999997643
No 11
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH, adaptor, endocytosis, phosphoprotein; 2.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.2e-18 Score=169.90 Aligned_cols=155 Identities=6% Similarity=0.140 Sum_probs=120.6
Q ss_pred ChhhHHHHHHHHHHHHHhC--------------------------C-CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q psy17650 1 ANIEENNSKLFGKLAKQSG--------------------------G-SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDL 52 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~--------------------------~-~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~El 52 (396)
|.||+.|||+|.||+|+|. + +|+|.++|+.|+.|+|.++.+|..|+++| .|+
T Consensus 70 a~IEe~YakqLrkLakk~~~l~k~~~~~~~~~~vlt~ee~~~~~~~e~G~l~~~W~~v~~e~e~~a~~H~~la~~L~~ev 149 (287)
T 3g9g_A 70 ANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIEELKSDLKSSTEYYNTLDQQV 149 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHTTSSCHHHHHHCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhcccchhhhhhhhccccccchhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999876 4 99999999999999999999999999999 599
Q ss_pred HHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHH
Q psy17650 53 VKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDY 132 (396)
Q Consensus 53 iK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Y 132 (396)
+++|.+|.+.+...++ . .+.++.+.. ..+++|..++ |
T Consensus 150 ~~pL~~~~e~~~~~~e-~-------~~l~~~L~~--------------~ak~le~~~k-------------k-------- 186 (287)
T 3g9g_A 150 VRELKESVENNTSWRE-S-------KDLHSKLSK--------------NAASIEHYSK-------------N-------- 186 (287)
T ss_dssp HHHHHCSSSSCHHHHH-H-------HHHHHHHHH--------------HHHHHHHCSS-------------C--------
T ss_pred HHHHHHHHHccHHHHH-H-------HHHHHHHHH--------------HHHHHHHHHh-------------h--------
Confidence 9999999865332221 1 112222222 2223333321 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhccCCCC--------CcchHhHHHHHHHhhcccccCCcc
Q psy17650 133 KTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSAN--------TNQISASVDELRVTAGNLTLSPLS 199 (396)
Q Consensus 133 k~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik~~~~~--------~~~~~as~eELr~sIeni~v~~~~ 199 (396)
...+.++++++..|+.++-..|+.||+.|++||. +||++++. +..+.++|+++++.|.+|+++...
T Consensus 187 ~~a~~~le~a~~qWes~aP~~fe~fQ~lEEeRL~-~Lkd~L~~y~~~~sd~~~~~~~~~E~~~~~ll~~dve~eI 260 (287)
T 3g9g_A 187 NENSSHLEEARRQWDQQSPYLFELFETIDYNRLD-TLKNCMLRFQTSFSDYLLNTTKECETVMTKFLAFEPQSEI 260 (287)
T ss_dssp CSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 0134469999999999999999999999999996 68888852 457889999999999999999753
No 12
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=99.55 E-value=1.4e-13 Score=133.50 Aligned_cols=156 Identities=20% Similarity=0.220 Sum_probs=125.1
Q ss_pred ChhhHHHHHHHHHHHHHhCC---CCChHHHHHHHHHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHHHHhhhhhhhhc
Q psy17650 1 ANIEENNSKLFGKLAKQSGG---SGTFAPLWQVLKTSIEKIATVQVKMM--QKV--NDLVKDVCKYTEELQKKHKLVKEE 73 (396)
Q Consensus 1 A~IEe~YAKsL~KLAKka~~---~GTl~~sW~~lk~e~Ekla~~H~~La--~kL--~EliK~l~~f~eeQkk~hKk~ke~ 73 (396)
+.||+.|||+|.|||+.+.. .+++.+.|.++....|+...+|..+. ..| +..+++|..++.++.+.||.+|+.
T Consensus 41 a~lE~E~Ak~L~KLa~~~~~~~~~~~~~pl~~i~~~~le~d~~~~~~~~~~~~lq~~~~~~~L~~~~~e~ek~RK~~Ke~ 120 (279)
T 3qwe_A 41 ASYELEFAKSTMKIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYYQPLAAKRTEIEKWRKEFKEQ 120 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999987655 45566677777777777776664222 233 588999999999999999999986
Q ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc----------CChhHHHH-------HHHHHHhHHHHHHHHH
Q psy17650 74 QGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDN----------GSAKDLEK-------AELKVKKAQEDYKTIV 136 (396)
Q Consensus 74 ~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~----------~s~KeieK-------a~~K~kKA~e~Yk~~v 136 (396)
-.+++|.++.....+.|||..|.++|.|.|+++... ...|.++| +..|++.|.++|+.+|
T Consensus 121 ---w~r~eKk~~dae~~l~KAK~~Y~~r~ee~ekak~~~~~~e~~q~~~~~~K~lek~r~~EEea~~K~eeAd~~Y~~~V 197 (279)
T 3qwe_A 121 ---WMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDSAPQASPGPSKQQERRRRSREEAQAKAQEAEALYQACV 197 (279)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccccccccccchhhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 568899999999999999999999999999997521 23577777 7788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 137 DKYALIKEDFEKRMSTSCKIRND 159 (396)
Q Consensus 137 ~kye~~r~~wE~~m~~~cq~Fqd 159 (396)
..++..+.+++..--......++
T Consensus 198 ~~a~~~r~eL~~tk~~~v~~Lr~ 220 (279)
T 3qwe_A 198 REANARQQDLEIAKQRIVSHVRK 220 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999997665455555555
No 13
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor, endocytosis, phosphoprotein; HET: 1PG; 2.80A {Saccharomyces cerevisiae}
Probab=99.54 E-value=1.3e-16 Score=157.18 Aligned_cols=69 Identities=17% Similarity=0.417 Sum_probs=64.4
Q ss_pred chhhHHHHHHHHhhhhccCCCccceEeeecceeecccchhhhhhhCCCCCcceeEEeccccccccccCCCCCCC
Q psy17650 323 TIPLAVAFHEIIHSYFRGTDETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLIN 396 (396)
Q Consensus 323 ~~p~a~a~~e~~~~~f~g~~~~~c~v~~~g~~~~sfp~g~~~~~~~~p~~~~l~f~~~~~~~~~~~~pn~~l~~ 396 (396)
.-.++++|+|+|||||||+++++|. |+|||+|+||+|+ ++++|.|++|+|||.|+++||+|+||++||+
T Consensus 67 ~pGLnASI~E~VNA~Fkgg~~tk~~--v~GEiaLsy~~~~---~s~~p~p~~l~fRL~N~~~Lekv~pN~~fv~ 135 (328)
T 3g9h_A 67 QFGLNASIAEVLNASFKDGMLQNSQ--LIGEIALNYLPNS---VMNSPLPIGINLRINNGAKFEKVILNQAFIE 135 (328)
T ss_dssp CCEEEEEEEEEEEEEEETTEEEEEE--EEEEEEEEEECCS---SSCCCCCSEEEEEEETGGGEEEEEECTTTEE
T ss_pred CCceeEEEEEEEEEEEECCcEEEEE--EEEEEEEecCCCc---cccCCCCccEEEEecCcchhheeeCCHHHhc
Confidence 3478999999999999999999995 9999999999998 7789999999999999999999999999973
No 14
>1zww_A SH3-containing GRB2-like protein 2; coiled coil, transferase; 2.30A {Mus musculus} SCOP: a.238.1.1 PDB: 1x03_A 2d4c_A 1x04_A 2c08_A
Probab=95.20 E-value=1.3 Score=41.38 Aligned_cols=49 Identities=10% Similarity=0.061 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 91 LQKAKDVYLQKCEELDKLRRD--NGSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 91 l~KaKk~Y~~~CkE~E~lrke--~~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
+.|+|+..+.+-.+.|..+.. ....+|++.++.++..+.+.+......+
T Consensus 154 i~k~rkkl~~~rLdyD~~k~k~~k~~eeEle~A~~~fe~~~e~~~~~m~~l 204 (256)
T 1zww_A 154 IQHHLKKLEGRRLDFGYKKKRQGKIPDEELRQALEKFDESKEIAESSMFNL 204 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666666655442 2356777777777777666544433333
No 15
>2z0v_A SH3-containing GRB2-like protein 3; helix bundle, alternative splicing, coiled coil, SH3 domain, endocytosis, structural genomics, NPPSFA; 2.49A {Homo sapiens}
Probab=94.94 E-value=1.8 Score=40.15 Aligned_cols=112 Identities=13% Similarity=0.095 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHH
Q psy17650 5 ENNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQT 83 (396)
Q Consensus 5 e~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~ 83 (396)
..-|..|.+.++..+.-..|..+...+-....++|..|.++-..+ +..+.+|.+|.+... |
T Consensus 75 ~~L~~~m~~~~~~l~~ds~~g~aL~~~g~a~~~ia~~~~~~~~~v~~~~l~pL~~~l~~d~---k--------------- 136 (240)
T 2z0v_A 75 GLLGDCMLKYGKELGEDSTFGNALIEVGESMKLMAEVKDSLDINVKQTFIDPLQLLQDKDL---K--------------- 136 (240)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHH---H---------------
T ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---------------
Confidence 345666666666665555567788888888888888888888888 577788888875321 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy17650 84 IQSTTLVLQKAKDVYLQKCEELDKLRRD--NGSAKDLEKAELKVKKAQEDYKTIVDKYA 140 (396)
Q Consensus 84 ~q~~~~~l~KaKk~Y~~~CkE~E~lrke--~~s~KeieKa~~K~kKA~e~Yk~~v~kye 140 (396)
.+.++|+..+.+-.+.|.++.. ....+|++.++.++..+.+.+......+-
T Consensus 137 ------~i~~~rKkle~~rLd~D~ak~k~~k~~eeEl~~A~~~fe~~~e~~~~~m~~~~ 189 (240)
T 2z0v_A 137 ------EIGHHLKKLEGRRLDYDYKKKRVGKIPDEEVRQAVEKFEESKELAERSMFNFL 189 (240)
T ss_dssp ------HHHHHHHHHHHHHHHHHHHHTTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223344444444444444321 24577888888888777776544444443
No 16
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons protein 2; helix bundle, coiled-coil, endocytosis; 2.00A {Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A 3q84_A
Probab=94.35 E-value=1.1 Score=42.74 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=14.1
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
...+++++...|..+...|...-..|
T Consensus 204 ~~~~~~~a~~~Y~~~v~~~n~~~~~~ 229 (312)
T 3abh_A 204 CKQDVLKTKEKYEKSLKELDQGTPQY 229 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 44455566666665555555544444
No 17
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Probab=94.23 E-value=0.68 Score=43.52 Aligned_cols=8 Identities=0% Similarity=-0.006 Sum_probs=2.9
Q ss_pred HHHHHHHh
Q psy17650 120 KAELKVKK 127 (396)
Q Consensus 120 Ka~~K~kK 127 (396)
+++..|..
T Consensus 183 ~a~~~Y~~ 190 (301)
T 2efk_A 183 ESKNEYAA 190 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33333333
No 18
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Probab=93.00 E-value=0.91 Score=46.48 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=5.3
Q ss_pred HHHHHHHHhHHHH
Q psy17650 119 EKAELKVKKAQED 131 (396)
Q Consensus 119 eKa~~K~kKA~e~ 131 (396)
++++..|+.+.+.
T Consensus 202 ~~a~~~Y~~~v~~ 214 (486)
T 3haj_A 202 LKTKEKYEKSLKE 214 (486)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444333
No 19
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.61A {Homo sapiens} SCOP: a.238.1.4
Probab=92.66 E-value=2.1 Score=40.04 Aligned_cols=7 Identities=29% Similarity=0.344 Sum_probs=2.6
Q ss_pred HHHHHHH
Q psy17650 140 ALIKEDF 146 (396)
Q Consensus 140 e~~r~~w 146 (396)
+.++.+|
T Consensus 189 ~~a~~~Y 195 (305)
T 2efl_A 189 EDSKADY 195 (305)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 20
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=92.61 E-value=1.1 Score=44.74 Aligned_cols=18 Identities=33% Similarity=0.267 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy17650 91 LQKAKDVYLQKCEELDKL 108 (396)
Q Consensus 91 l~KaKk~Y~~~CkE~E~l 108 (396)
++|++..|...+.+.+.+
T Consensus 166 ~eK~~~k~~k~~~~~~~a 183 (406)
T 4dyl_A 166 RDKAKDKYVRSLWKLFAH 183 (406)
T ss_dssp -CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444454444444333
No 21
>2ykt_A Brain-specific angiogenesis inhibitor 1-associate protein 2; signaling protein, NPY motif, binding pocket; 2.11A {Homo sapiens} PDB: 1y2o_A 1wdz_A
Probab=92.19 E-value=2 Score=40.75 Aligned_cols=41 Identities=10% Similarity=0.152 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhhhc
Q psy17650 130 EDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIK 170 (396)
Q Consensus 130 e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ik 170 (396)
+.-.++++.++.-+.+.++-..++|+..--+|.+|+-+.+.
T Consensus 162 ~~~~~~~e~v~~~~~~le~~~~~~lr~aL~EERrRycflv~ 202 (253)
T 2ykt_A 162 DKELQYIDAISNKQGELENYVSDGYKTALTEERRRFCFLVE 202 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777788877888888888888888754443
No 22
>3ok8_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 2; I-BAR, protein binding; 2.25A {Mus musculus}
Probab=91.75 E-value=5.7 Score=37.05 Aligned_cols=34 Identities=6% Similarity=0.062 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccccchhhhh
Q psy17650 136 VDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEI 169 (396)
Q Consensus 136 v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~i 169 (396)
++....-+.+.+.=..++|+.-.-+|.+|+-+.+
T Consensus 157 ~e~v~~~q~el~~f~~~s~r~Al~EErRRYcFL~ 190 (222)
T 3ok8_A 157 KESVNRLHAQMQAFVSESKRAAELEEKRRYRFLA 190 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677888888888888886533
No 23
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=91.53 E-value=8.1 Score=35.85 Aligned_cols=43 Identities=7% Similarity=0.217 Sum_probs=33.9
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 22 GTFAPLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 22 GTl~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
+.+..+...|-.-+-.+...|..|...++ -++.+|.+|.++.-
T Consensus 80 ~~~~~~L~~f~~~l~ei~~~~~~l~~~~~~~~~~PL~~f~~~dl 123 (265)
T 2q12_A 80 EVMSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERDL 123 (265)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33457778888888889999999999995 56789999987653
No 24
>2d1l_A Metastasis suppressor protein 1; IRSP53, actin binding, IMD, protein binding; HET: MSE; 1.85A {Mus musculus}
Probab=90.84 E-value=10 Score=35.98 Aligned_cols=37 Identities=3% Similarity=-0.115 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhhh
Q psy17650 132 YKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVE 168 (396)
Q Consensus 132 Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v~ 168 (396)
+...+..++....++|+--.++|...--+|.+||-+.
T Consensus 169 l~~a~q~v~~~~~~le~~~~~~~r~AL~EERrRycfl 205 (253)
T 2d1l_A 169 LDSALQDVNDKYLLLEETEKQAVRKALIEERGRFCTF 205 (253)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556677778888888899998888888887543
No 25
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis; 2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Probab=90.44 E-value=6.9 Score=37.42 Aligned_cols=23 Identities=22% Similarity=0.266 Sum_probs=11.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHH
Q psy17650 126 KKAQEDYKTIVDKYALIKEDFEK 148 (396)
Q Consensus 126 kKA~e~Yk~~v~kye~~r~~wE~ 148 (396)
+|+...|..+..+.+.++.+|..
T Consensus 186 eK~~~k~~k~~~~~~~a~~~Y~~ 208 (337)
T 2x3v_A 186 KKLVDKVDKCRQDVQKTQEKYEK 208 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455555555555555533
No 26
>1i4d_A Arfaptin 2, partner of RAC1; coiled coil, G-protein, complex, signaling protein; HET: GDP; 2.50A {Homo sapiens} SCOP: a.238.1.2 PDB: 1i49_A* 1i4l_A* 1i4t_A*
Probab=89.20 E-value=9.1 Score=35.68 Aligned_cols=114 Identities=19% Similarity=0.202 Sum_probs=63.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy17650 32 KTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKK-HKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRR 110 (396)
Q Consensus 32 k~e~Ekla~~H~~La~kL~EliK~l~~f~eeQkk~-hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrk 110 (396)
..+.-..|+.|..+...=..+++.|.-|..+..-. .|-+.+ ++ ...+..+.||=-|.+.|.+.|.+..
T Consensus 62 ~~~f~~~~~~~r~~~k~g~~Ll~~L~~f~s~l~T~~~kaI~D----T~-------lTIk~ye~aR~EY~ay~~~~ee~~~ 130 (224)
T 1i4d_A 62 QEEFGYNAETQKLLCKNGETLLGAVNFFVSSINTLVTKTMED----TL-------MTVKQYEAARLEYDAYRTDLEELSL 130 (224)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHH----HH-------HHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhHhccH----HH-------HHHHHHHHHhHhHHHHHhhHHHhhc
Confidence 34445556666666555556666666666665433 222221 22 2233456899999999999998865
Q ss_pred ccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhh
Q psy17650 111 DNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHV 167 (396)
Q Consensus 111 e~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~~Ri~v 167 (396)
+.-.++.+. ++++++..++.+-++|+..|.|= |++.+-++..|+++
T Consensus 131 ~~~~~~~l~----rve~~q~~~~~ak~kf~kLR~DV-------~~KleLLd~~r~kv 176 (224)
T 1i4d_A 131 GPRDAGTRG----RLESAQATFQAHRDKYEKLRGDV-------AIKLKFLEENKIKV 176 (224)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred ccccccchh----hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHH
Confidence 421222222 33357777777777888888765 55555555555543
No 27
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=88.55 E-value=12 Score=34.12 Aligned_cols=110 Identities=11% Similarity=0.112 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHH
Q psy17650 46 MQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLE----IVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKA 121 (396)
Q Consensus 46 a~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~e----a~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa 121 (396)
.+++.++-..+..|++.-+.-=..++.++....+ ...........+...|..|.+.+.+...... .-++++.
T Consensus 23 ~q~~~~le~El~EFqesSrELE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~--~Lq~el~-- 98 (189)
T 2v71_A 23 KQSFQEARDELVEFQEGSRELEAELEAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVS--VLEDDLS-- 98 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH--
Confidence 3444445555556665543332222222111111 2222344455566677777777666322110 0112222
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17650 122 ELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDR 161 (396)
Q Consensus 122 ~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E 161 (396)
.+++..+.|+..+-.++....++|+.-..+|-.++|.|
T Consensus 99 --~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e 136 (189)
T 2v71_A 99 --QTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFE 136 (189)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHH
Confidence 34456677888888888888888888887777776644
No 28
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=87.86 E-value=6.9 Score=35.40 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 117 DLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 117 eieKa~~K~kKA~e~Yk~~v~ky 139 (396)
.+.+++.+++.|.+.|......+
T Consensus 167 kl~~ae~el~~ak~~ye~ln~~L 189 (244)
T 1uru_A 167 KLTKGREQLEEARRTYEILNTEL 189 (244)
T ss_dssp TTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666666666666555444
No 29
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A {Drosophila melanogaster}
Probab=87.57 E-value=3.6 Score=38.54 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=13.4
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
...++++++..|..+...|...-..|
T Consensus 182 ~~~~~~~a~~~Y~~~v~~~n~~~~~~ 207 (290)
T 3i2w_A 182 TKDQVQKCREKYEQAIAEITKYNSVY 207 (290)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 44455566665555555444444444
No 30
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=87.38 E-value=11 Score=34.50 Aligned_cols=20 Identities=25% Similarity=0.184 Sum_probs=8.2
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy17650 120 KAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 120 Ka~~K~kKA~e~Yk~~v~ky 139 (396)
|++..|..+.+.|......|
T Consensus 174 ka~~~Y~~~v~~~n~~~~~~ 193 (276)
T 2v0o_A 174 KATDTYKLYVEKYALAKADF 193 (276)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444443333333
No 31
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=85.46 E-value=18 Score=35.26 Aligned_cols=40 Identities=10% Similarity=0.295 Sum_probs=29.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy17650 24 FAPLWQVLKTSIEKIATVQVKMMQKVND-LVKDVCKYTEEL 63 (396)
Q Consensus 24 l~~sW~~lk~e~Ekla~~H~~La~kL~E-liK~l~~f~eeQ 63 (396)
+..+...|-.-+-.++.+|..|...++. ++.+|.+|.++.
T Consensus 82 v~~~l~~f~~~~~ei~~~~~~l~~~~~~~~~~PL~~f~~~d 122 (385)
T 2q13_A 82 MSSTLQQFSKVIDELSSCHAVLSTQLADAMMFPITQFKERD 122 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777788888888888854 567888887664
No 32
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=84.17 E-value=28 Score=34.24 Aligned_cols=40 Identities=5% Similarity=0.243 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Q psy17650 25 APLWQVLKTSIEKIATVQVKMMQKVN-DLVKDVCKYTEELQ 64 (396)
Q Consensus 25 ~~sW~~lk~e~Ekla~~H~~La~kL~-EliK~l~~f~eeQk 64 (396)
..+...|-.-...+...|..|...++ -++.+|..|.++..
T Consensus 106 ~~~l~~f~~~~~ei~~~~~~L~~~~~~~i~~pL~~f~k~di 146 (407)
T 4h8s_A 106 ISTLHYFSKVVDELNLLHTELAKQLADTMVLPIIQFREKDL 146 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778888888888885 56688888887653
No 33
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=81.43 E-value=19 Score=36.04 Aligned_cols=37 Identities=5% Similarity=-0.087 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHH
Q psy17650 6 NNSKLFGKLAKQSGGSGTFAPLWQVLKTSIEKIATVQV 43 (396)
Q Consensus 6 ~YAKsL~KLAKka~~~GTl~~sW~~lk~e~Ekla~~H~ 43 (396)
.|+..|..+.+......+ ...=..|..|+|.++.+|.
T Consensus 302 ~~~~~l~~~~~~~~~~~~-~~g~~eF~~Eve~L~~i~H 338 (487)
T 3oja_A 302 PFADRLIALKRKEHALLS-GQGSETERLECERENQARQ 338 (487)
T ss_dssp HHHHHHHHHHHHHHCSCC------CHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHhhhhcc-cccHHHHHHHHHHHhcccc
Confidence 455555555443222100 1123568889999988765
No 34
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse, BAR domain, endocytosis; 2.60A {Mus musculus} PDB: 3syv_A 3qe6_A
Probab=75.65 E-value=17 Score=34.82 Aligned_cols=23 Identities=13% Similarity=0.320 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 117 DLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 117 eieKa~~K~kKA~e~Yk~~v~ky 139 (396)
++++++..|..+.+.|...-..|
T Consensus 198 ~~~~a~~~Y~~~l~~~n~~~~~y 220 (320)
T 3m3w_A 198 EAEKMKTQYEQTLAELNRYTPRY 220 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHH
Confidence 44444444444444444443444
No 35
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=75.12 E-value=46 Score=30.87 Aligned_cols=22 Identities=18% Similarity=0.229 Sum_probs=15.7
Q ss_pred cchHhHHHHHHHhhcccccCCc
Q psy17650 177 NQISASVDELRVTAGNLTLSPL 198 (396)
Q Consensus 177 ~~~~as~eELr~sIeni~v~~~ 198 (396)
..+-..|+.++...++.-|-+.
T Consensus 175 ~~lL~~Yerir~~~~g~avv~v 196 (256)
T 3na7_A 175 PKIYSFYERIRRWAKNTSIVTI 196 (256)
T ss_dssp HHHHHHHHHHHHHHGGGSEEEC
T ss_pred HHHHHHHHHHHHhCCCceEEEe
Confidence 3667889999987676655543
No 36
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=71.39 E-value=82 Score=31.05 Aligned_cols=42 Identities=10% Similarity=0.068 Sum_probs=25.8
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEE 62 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~ee 62 (396)
.+.|..++..+-...++++.+|.+-+... ..+...|..|..-
T Consensus 248 ~~~Ls~aL~~l~~~~e~i~~l~~~Qa~~d~~~L~E~L~~Y~~l 290 (386)
T 4akv_A 248 SEALNSAISHTGRTYEAIGEMFAEQPKNDLFQMLDTLSLYQGL 290 (386)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777655443 3344445445443
No 37
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=71.01 E-value=64 Score=29.60 Aligned_cols=66 Identities=21% Similarity=0.330 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHH
Q psy17650 84 IQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIV-DKYALIKEDFEKR 149 (396)
Q Consensus 84 ~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v-~kye~~r~~wE~~ 149 (396)
+...++...+-|..|...-..++.|.+...-...|+.-+.|+++|...|++-+ +-++.|...|-..
T Consensus 117 lK~ql~nf~e~RLiYDHYKlKvdELEK~~KdSeKI~RNQsKLssAEtaYkqvcsDiInkMnkll~n~ 183 (294)
T 3caz_A 117 IKKEYKETDKYRERYDHYKVKLDNLEKKNKDQERIERNQQKFKDAEAAYSSVCADLIQKMETVWKKH 183 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhHHHHHhccchHHHHHHhHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777788899998888889998877666677777889999999998754 4447777766443
No 38
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=65.70 E-value=29 Score=31.63 Aligned_cols=57 Identities=18% Similarity=0.121 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-------cc-CChhHHHHHHHHHHhHHHHHHHHHHHH
Q psy17650 83 TIQSTTLVLQKAKDVYLQKCEELDKLRR-------DN-GSAKDLEKAELKVKKAQEDYKTIVDKY 139 (396)
Q Consensus 83 ~~q~~~~~l~KaKk~Y~~~CkE~E~lrk-------e~-~s~KeieKa~~K~kKA~e~Yk~~v~ky 139 (396)
.+......+.+..+..+.+-.+.|+++. .. .....+.|++.+++.|.+.|....+.+
T Consensus 138 ~~~~~~~~i~~~ikKR~~k~lDyD~~~~~l~kl~~k~~kd~~kl~kae~el~~ak~~ye~ln~~L 202 (251)
T 2fic_A 138 TYLGQFPDIKSRIAKRGRKLVDYDSARHHYESLQTAKKKDEAKIAKAEEELIKAQKVFEEMNVDL 202 (251)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555554432 11 133455667777777777766555555
No 39
>2fic_A Bridging integrator 1; BAR domain, homodimer, coiled-coils, endocytosis/exocytosis, protein complex, endocytosis-exocytosis; 1.99A {Homo sapiens} PDB: 2rmy_A 2rnd_A
Probab=65.48 E-value=79 Score=28.60 Aligned_cols=31 Identities=16% Similarity=0.146 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 116 KDLEKAELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 116 KeieKa~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
.|++.++..++...+..+.-++.+...+..|
T Consensus 186 ~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~ 216 (251)
T 2fic_A 186 EELIKAQKVFEEMNVDLQEELPSLWNSRVGF 216 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555554444444444444444333
No 40
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=63.76 E-value=1.1e+02 Score=29.71 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=12.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 24 FAPLWQVLKTSIEKIATVQVKMMQK 48 (396)
Q Consensus 24 l~~sW~~lk~e~Ekla~~H~~La~k 48 (396)
|..+|..+-.-.++++.+|...+..
T Consensus 231 L~~al~~l~~~~~~i~~l~~~qa~~ 255 (366)
T 3dyt_A 231 LNDAITEAGKTYEEIASLVAEQPKK 255 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544433
No 41
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=62.86 E-value=22 Score=40.16 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=8.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHH
Q psy17650 121 AELKVKKAQEDYKTIVDKYALI 142 (396)
Q Consensus 121 a~~K~kKA~e~Yk~~v~kye~~ 142 (396)
++..+.++..+++..-++++..
T Consensus 996 l~~~~~~~~ke~~~lee~~~~~ 1017 (1080)
T 2dfs_A 996 LRKELHQTQTEKKTIEEWADKY 1017 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 42
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=59.58 E-value=1.3e+02 Score=29.29 Aligned_cols=42 Identities=14% Similarity=0.350 Sum_probs=20.3
Q ss_pred CChHHHHHHHHHHHHHHHHH--------HHHHHHHHH---HHHHHHHHHHHHH
Q psy17650 22 GTFAPLWQVLKTSIEKIATV--------QVKMMQKVN---DLVKDVCKYTEEL 63 (396)
Q Consensus 22 GTl~~sW~~lk~e~Ekla~~--------H~~La~kL~---EliK~l~~f~eeQ 63 (396)
+.++..+..+-...-.+|.+ |-.|.+.|. +....+.+..++|
T Consensus 200 ~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~L~~al~~l~~~~~~i~~l~~~q 252 (366)
T 3dyt_A 200 GPLPKEYQKIGKALQSLATVFSSSGYQGETDLNDAITEAGKTYEEIASLVAEQ 252 (366)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555555543 555555553 4444444444444
No 43
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.08 E-value=1.9e+02 Score=36.66 Aligned_cols=49 Identities=14% Similarity=0.209 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhhhh
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKM-MQKVNDLVKDVCKYTEELQKKHKLV 70 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~L-a~kL~EliK~l~~f~eeQkk~hKk~ 70 (396)
+.+++.....=+.+++...+ |++. -.||.|-...|.+-+++...+.+++
T Consensus 1901 i~~y~~ll~~K~~el~~~~~-rl~~GL~KL~et~~~V~~l~~~L~~~~~~L 1950 (3245)
T 3vkg_A 1901 INQVVLLINEKRDQLEEEQL-HLNIGLKKLRDTEAQVKDLQVSLAQKNREL 1950 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555444445444322 3333 3566555556665555555444444
No 44
>3frt_A Charged multivesicular BODY protein 3; ESCRT, ESCRT-111, CHMP, IST1, coiled coil, cytoplasm, lipoprotein, membrane, myristate, phosphoprotein; 4.00A {Homo sapiens}
Probab=55.17 E-value=67 Score=29.59 Aligned_cols=116 Identities=10% Similarity=0.136 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhc-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc---
Q psy17650 36 EKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEE-QGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD--- 111 (396)
Q Consensus 36 Ekla~~H~~La~kL~EliK~l~~f~eeQkk~hKk~ke~-~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke--- 111 (396)
|.+=.+...|....+++.+.+.+...+.++...++|.. -.|-.++.+-+++..-...|...+|+..--.++...-.
T Consensus 10 e~~r~~~r~Lr~~~R~LdR~~~kle~eEkk~~~~IKkaakkg~~~~arilAkelVR~Rk~~~rl~~~kaqL~sV~~rlqt 89 (218)
T 3frt_A 10 ELVNEWSLKIRKEMRVVDRQIRDIQREEEKVKRSVKDAAKKGQKDVCIVLAKEMIRSRKAVSKLYASKAHMNSVLMGMKN 89 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666676666777777777666655544444322 23455666666666666666666666555555543211
Q ss_pred cCChhHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHHHHHH
Q psy17650 112 NGSAKDLEKAELKVKKAQEDYKTIV--DKYALIKEDFEKRMS 151 (396)
Q Consensus 112 ~~s~KeieKa~~K~kKA~e~Yk~~v--~kye~~r~~wE~~m~ 151 (396)
..+...+.++-.+..++...-...+ +++..+-.+|+++|.
T Consensus 90 ~~s~~~v~~sM~~st~~M~~~n~~m~l~~i~~tM~efekE~~ 131 (218)
T 3frt_A 90 QLAVLRVAGSLQKSTEVMKAMQSLVKIPEIQATMRELSKEMM 131 (218)
T ss_dssp HHHCC----CCCCCHHHHHHHHHSTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1111222222222333333333443 566666666665544
No 45
>1uru_A Amphiphysin; endocytosis, coiled-coil, membrane curvature; 2.6A {Drosophila melanogaster} SCOP: a.238.1.1
Probab=53.49 E-value=1.2e+02 Score=26.92 Aligned_cols=33 Identities=12% Similarity=0.054 Sum_probs=15.7
Q ss_pred ChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy17650 114 SAKDLEKAELKVKKAQEDYKTIVDKYALIKEDF 146 (396)
Q Consensus 114 s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~w 146 (396)
...+++.++..+....+.++.-++.+...+..|
T Consensus 171 ae~el~~ak~~ye~ln~~L~~eLp~l~~~~~~~ 203 (244)
T 1uru_A 171 GREQLEEARRTYEILNTELHDELPALYDSRILF 203 (244)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 444555555555544444444444444444333
No 46
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=49.53 E-value=69 Score=33.09 Aligned_cols=12 Identities=25% Similarity=0.288 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHH
Q psy17650 93 KAKDVYLQKCEE 104 (396)
Q Consensus 93 KaKk~Y~~~CkE 104 (396)
.+|..|+++-.|
T Consensus 27 ~aka~Ye~~~ae 38 (497)
T 3iox_A 27 DAKAAYEAAVAA 38 (497)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 345555554444
No 47
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=47.98 E-value=1.1e+02 Score=24.63 Aligned_cols=33 Identities=15% Similarity=0.087 Sum_probs=18.5
Q ss_pred chHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 76 PTLEIVQT-IQSTTLVLQKAKDVYLQKCEELDKL 108 (396)
Q Consensus 76 ~~~ea~k~-~q~~~~~l~KaKk~Y~~~CkE~E~l 108 (396)
|+|+++|. ++........+-+.|++...++..+
T Consensus 2 ~~MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~ 35 (101)
T 3u1c_A 2 GHMDAIKKKMQMLKLDKENALDRAEQAEADKKAA 35 (101)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777753 4555555555666666555444333
No 48
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=44.18 E-value=20 Score=22.02 Aligned_cols=22 Identities=27% Similarity=0.453 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHhhhhhhh
Q psy17650 50 NDLVKDVCKYTEELQKKHKLVK 71 (396)
Q Consensus 50 ~EliK~l~~f~eeQkk~hKk~k 71 (396)
.|+.|++++.+|..++-||++.
T Consensus 4 delykeledlqerlrklrkklr 25 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4678888888888888888763
No 49
>4g3b_A Alpha4F3D; alpha helix, de novo designed, fluorinated protein, coiled-C NOVO protein; HET: 6FL; 1.19A {Synthetic} PDB: 4g4l_A* 3twg_A*
Probab=42.60 E-value=22 Score=21.65 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhh
Q psy17650 50 NDLVKDVCKYTEELQKKHKLV 70 (396)
Q Consensus 50 ~EliK~l~~f~eeQkk~hKk~ 70 (396)
.|..|++++.+|..++.||++
T Consensus 4 de~ykeled~qerlrk~rkkl 24 (26)
T 4g3b_A 4 DEXYKELEDXQERLRKXRKKL 24 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 366788888999888888875
No 50
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=41.56 E-value=3.6e+02 Score=34.34 Aligned_cols=35 Identities=17% Similarity=0.271 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHH
Q psy17650 89 LVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQ 129 (396)
Q Consensus 89 ~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~ 129 (396)
..+.+-++.|.....|.++++. |++.++.|+.+|.
T Consensus 2042 ~~l~~L~~~~~~~~~ek~~L~~------e~~~~~~kl~rA~ 2076 (3245)
T 3vkg_A 2042 KSIATYKEEYATLIRETEQIKT------ESSKVKNKVDRSI 2076 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHH
Confidence 3334445555555555444432 3445555555553
No 51
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=40.23 E-value=1.4e+02 Score=29.57 Aligned_cols=48 Identities=8% Similarity=-0.010 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHhhc-cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy17650 97 VYLQKCEELDKLRRD-NGSAKDLEKAELKVKKAQEDYKTIVDKYALIKE 144 (396)
Q Consensus 97 ~Y~~~CkE~E~lrke-~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~ 144 (396)
.+...+.|.++.+++ ..+++++++++.+-.+..........+.+++++
T Consensus 422 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (487)
T 3oja_A 422 MYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANA 470 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhccc
Confidence 334444444444332 234445555444333333333333333333333
No 52
>3vem_A Helicase protein MOM1; coiled-coil, hendecad, transcriptional gene silencing, siRNA nucleus, chromatin, transcription; 3.20A {Arabidopsis thaliana}
Probab=39.86 E-value=1.5e+02 Score=24.69 Aligned_cols=31 Identities=10% Similarity=0.135 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy17650 28 WQVLKTSIEKIATVQVKMMQKVN-DLVKDVCK 58 (396)
Q Consensus 28 W~~lk~e~Ekla~~H~~La~kL~-EliK~l~~ 58 (396)
.+.++.+.|.+...|.+-..+|+ |+.++|++
T Consensus 41 LeRLr~~~d~~~K~HE~kklqLkse~e~E~ae 72 (115)
T 3vem_A 41 LEKLRRESENSKKTFEEKKSILKAELERKMAE 72 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555552 44444433
No 53
>3vjz_A DMP19, putative uncharacterized protein; helix bundle, DNA mimic, gene regulation; 1.80A {Neisseria meningitidis}
Probab=39.41 E-value=1.3e+02 Score=26.74 Aligned_cols=73 Identities=15% Similarity=0.206 Sum_probs=45.7
Q ss_pred chHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 76 PTLEIVQTI--QSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVK---KAQEDYKTIVDKYALIKEDFEKRM 150 (396)
Q Consensus 76 ~~~ea~k~~--q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~k---KA~e~Yk~~v~kye~~r~~wE~~m 150 (396)
.+.++.+.| ....+-+.|||+.|.....++|+.+.. .++...+..++. --.++|..+-+.+-..-..|.+++
T Consensus 80 p~akalr~wG~~~l~kli~kA~klY~~~~~~ie~e~~~---~~ef~al~eq~p~FDelDdefye~eE~~~~~va~YV~~H 156 (166)
T 3vjz_A 80 PLADSLRRWKIKAVPKVLDKAKALYEQHGKTIETLADG---GADIPSLRKQFPEFEEWDGAYYEAAEQDLPLLAEHIQSN 156 (166)
T ss_dssp SHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH---TCCHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHhCchhHHHHHHHHHHHHHHhhhHHHHHhhc---cchHHHHHHHhhhhhhhHHHHHHHhhHHHHHHHHHHHHH
Confidence 356677766 566778899999999999998887652 344555544443 233456555555555545554444
Q ss_pred H
Q psy17650 151 S 151 (396)
Q Consensus 151 ~ 151 (396)
.
T Consensus 157 ~ 157 (166)
T 3vjz_A 157 W 157 (166)
T ss_dssp H
T ss_pred H
Confidence 3
No 54
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=39.26 E-value=2.2e+02 Score=25.71 Aligned_cols=54 Identities=11% Similarity=0.043 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh---c-cCChhHHHHHHHHHHhHHHHHHHHHHHHH
Q psy17650 87 TTLVLQKAKDVYLQKCEELDKLRR---D-NGSAKDLEKAELKVKKAQEDYKTIVDKYA 140 (396)
Q Consensus 87 ~~~~l~KaKk~Y~~~CkE~E~lrk---e-~~s~KeieKa~~K~kKA~e~Yk~~v~kye 140 (396)
....+..++..|...-.++++++. . ..+..+++.++..+..++..+...-..++
T Consensus 65 a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~a~l~~a~a~l~ 122 (277)
T 2f1m_A 65 AKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQQANAAVTAAKAAVE 122 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455666667666667777653 2 36889999888888877766655444443
No 55
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=35.85 E-value=2.5e+02 Score=25.34 Aligned_cols=30 Identities=13% Similarity=0.158 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy17650 80 IVQTIQSTTLVLQKAKDVYLQKCEELDKLR 109 (396)
Q Consensus 80 a~k~~q~~~~~l~KaKk~Y~~~CkE~E~lr 109 (396)
.+..++.-...+.+.+..+..+++++|..-
T Consensus 89 ~~~~Lq~el~~l~~~~~~l~~~ireLEq~N 118 (189)
T 2v71_A 89 QVSVLEDDLSQTRAIKEQLHKYVRELEQAN 118 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345567777778888888988888887653
No 56
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=34.53 E-value=2e+02 Score=23.83 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 44 KMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKL 108 (396)
Q Consensus 44 ~La~kL~EliK~l~~f~eeQkk~hKk~ke~~~~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~l 108 (396)
+|..+...+--++..|+......++. -...+..+|+-...+...++.|..+++++|..
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e-------~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~ 64 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQ-------SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQA 64 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444555665544322221 12334556777777778888888888887765
No 57
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=30.01 E-value=2.1e+02 Score=26.90 Aligned_cols=55 Identities=15% Similarity=0.216 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh---c-cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy17650 89 LVLQKAKDVYLQKCEELDKLRR---D-NGSAKDLEKAELKVKKAQEDYKTIVDKYALIK 143 (396)
Q Consensus 89 ~~l~KaKk~Y~~~CkE~E~lrk---e-~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r 143 (396)
..+..++..|...-+++++++. . ..+..+++.++..+..+...+...-.+++.++
T Consensus 84 a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~~~~~~~~l~~~~ 142 (369)
T 4dk0_A 84 AQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLNTAKATLNNAKAEMDVVQENIKQAE 142 (369)
T ss_dssp HHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555556555555555543 3 36888999988888888776665554444443
No 58
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=29.93 E-value=4.6e+02 Score=26.84 Aligned_cols=51 Identities=14% Similarity=0.136 Sum_probs=36.3
Q ss_pred cCChhHHHHHHHHHHhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy17650 112 NGSAKDLEKAELKVKKAQED---YKTIVDKYALIKEDFEKRMSTSCKIRNDDRD 162 (396)
Q Consensus 112 ~~s~KeieKa~~K~kKA~e~---Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E~ 162 (396)
..+.-|++|++..+++..++ |+..+..-+.....+.+++.+--++|-+.|.
T Consensus 412 rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~Rr 465 (470)
T 3ilw_A 412 RLAALERQRIIDDLAKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHGDDRR 465 (470)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 35778888888877776654 4444444466788888888888889977543
No 59
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=28.31 E-value=3e+02 Score=28.54 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=38.5
Q ss_pred CChhHHHHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhccccch
Q psy17650 113 GSAKDLEKAELKVKKAQEDYKTIVDKY---ALIKEDFEKRMSTSCKIRNDDRDHKI 165 (396)
Q Consensus 113 ~s~KeieKa~~K~kKA~e~Yk~~v~ky---e~~r~~wE~~m~~~cq~Fqd~E~~Ri 165 (396)
.+.-|++|++..+++..++...+-.-+ ...+..|.+++.+--++|-+.|.-.|
T Consensus 451 LT~~e~~kl~~E~~~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~~RrT~i 506 (514)
T 2inr_A 451 LTNTDIVALEGEHKELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKSERLSLI 506 (514)
T ss_dssp GSTTHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCEE
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCCCCccc
Confidence 577788888887777666544444444 55788999999999999988654444
No 60
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=27.41 E-value=4.5e+02 Score=25.73 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=27.3
Q ss_pred CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 21 SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEEL 63 (396)
Q Consensus 21 ~GTl~~sW~~lk~e~Ekla~~H~~La~kL~EliK~l~~f~eeQ 63 (396)
+-.....|+.+...++++-.-.+.....|.++.+.+.+..++.
T Consensus 347 ~p~~~~~~~~~~~~~~~vl~G~~t~eeal~~~~~~i~~~l~~~ 389 (471)
T 3mq9_A 347 IPQMSAFWYAVRTAVINAASGRQTVDEALKDAQTRITAARDGL 389 (471)
T ss_dssp STTHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4445677777777777776655555566666666666555544
No 61
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=26.64 E-value=5.7e+02 Score=26.69 Aligned_cols=17 Identities=0% Similarity=-0.093 Sum_probs=11.7
Q ss_pred chHhHHHHHHHhhcccc
Q psy17650 178 QISASVDELRVTAGNLT 194 (396)
Q Consensus 178 ~~~as~eELr~sIeni~ 194 (396)
.+...|+++...|++++
T Consensus 173 vd~~sY~~~QKQLeQv~ 189 (562)
T 3ghg_A 173 VDLKDYEDQQKQLEQVI 189 (562)
T ss_dssp CCHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHh
Confidence 56678888877666543
No 62
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=25.71 E-value=2.8e+02 Score=25.92 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh---c-cCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q psy17650 88 TLVLQKAKDVYLQKCEELDKLRR---D-NGSAKDLEKAELKVKKAQEDYKTIVDKYALIKED 145 (396)
Q Consensus 88 ~~~l~KaKk~Y~~~CkE~E~lrk---e-~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~ 145 (396)
...+..++..|...-.++++++. . ..+..+++.++..++.|...+...-.+++..+..
T Consensus 97 ~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a~l~~a~~~l~~~~~~ 158 (359)
T 3lnn_A 97 NSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAK 158 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34456677777777777777754 2 3688899999988888887777766666555443
No 63
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=24.97 E-value=1.1e+02 Score=26.57 Aligned_cols=10 Identities=20% Similarity=0.195 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q psy17650 97 VYLQKCEELD 106 (396)
Q Consensus 97 ~Y~~~CkE~E 106 (396)
..+..|..++
T Consensus 76 ~veeA~~~L~ 85 (152)
T 4fla_A 76 TVDEACLLLA 85 (152)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333444433
No 64
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=23.95 E-value=5.1e+02 Score=25.24 Aligned_cols=17 Identities=24% Similarity=0.382 Sum_probs=6.8
Q ss_pred ChHHHHHHHHHHHHHHH
Q psy17650 23 TFAPLWQVLKTSIEKIA 39 (396)
Q Consensus 23 Tl~~sW~~lk~e~Ekla 39 (396)
.++.-+..+-.....+|
T Consensus 221 ~~~~e~~~l~~~l~~l~ 237 (386)
T 4akv_A 221 GFRKEFQKLGSAFQAIS 237 (386)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333333444444444
No 65
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=23.70 E-value=3.2e+02 Score=25.31 Aligned_cols=52 Identities=17% Similarity=0.090 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHh---hc-cCChhHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy17650 91 LQKAKDVYLQKCEELDKLR---RD-NGSAKDLEKAELKVKKAQEDYKTIVDKYALI 142 (396)
Q Consensus 91 l~KaKk~Y~~~CkE~E~lr---ke-~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~ 142 (396)
+..++..|...-.++++++ +. ..+..+++.++..+..+...+...-.+++.+
T Consensus 85 l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~a~l~~~~a~l~~a 140 (341)
T 3fpp_A 85 RQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRN 140 (341)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445543 23 4688899888888777766655444444333
No 66
>4avm_A Bridging integrator 2; protein binding, plasma membrane, BAR adaptor; 1.91A {Homo sapiens}
Probab=23.31 E-value=4.2e+02 Score=23.96 Aligned_cols=139 Identities=9% Similarity=0.015 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhCC--------CCChHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhhccC
Q psy17650 5 ENNSKLFGKLAKQSGG--------SGTFAPLWQVLKTSIEKIATVQVKMMQKV-NDLVKDVCKYTEELQKKHKLVKEEQG 75 (396)
Q Consensus 5 e~YAKsL~KLAKka~~--------~GTl~~sW~~lk~e~Ekla~~H~~La~kL-~EliK~l~~f~eeQkk~hKk~ke~~~ 75 (396)
..|-.++..+...-.+ |+.--..-+.+..-++.+..+-.++..+| ..++.++..|..-....+|.++
T Consensus 57 k~y~~ai~~~~~~q~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~vi~Pl~~~~~~~~~i~k~I~---- 132 (237)
T 4avm_A 57 KNFLSAVKVMHESSKRVSETLQEIYSSEWDGHEELKAIVWNNDLLWEDYEEKLADQAVRTMEIYVAQFSEIKERIA---- 132 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCTTSTTHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHTHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH----
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy17650 76 PTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTS 153 (396)
Q Consensus 76 ~~~ea~k~~q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~ 153 (396)
+.-+.+......-.+.++.-...-++..++.+ ...|++.++..++...+..+.-++.+...+..|-.....+
T Consensus 133 ---KR~~kllDyd~~~~~~~kl~~k~~kd~~kl~k---ae~el~~a~~~ye~lN~~L~~eLP~l~~~~~~~~~~~~~~ 204 (237)
T 4avm_A 133 ---KRGRKLVDYDSARHHLEAVQNAKKKDEAKTAK---AEEEFNKAQTVFEDLNQELLEELPILYNSRIGCYVTIFQN 204 (237)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHHHHhccCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 67
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=23.09 E-value=3.2e+02 Score=22.54 Aligned_cols=71 Identities=14% Similarity=0.129 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy17650 85 QSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDR 161 (396)
Q Consensus 85 q~~~~~l~KaKk~Y~~~CkE~E~lrke~~s~KeieKa~~K~kKA~e~Yk~~v~kye~~r~~wE~~m~~~cq~Fqd~E 161 (396)
......+..-|..|.+...+...... .-++|+. +++...+.|+.++-.+|....|+|+.-..+|--++|.|
T Consensus 13 ~~L~~E~e~~k~K~~~~~~e~~~~~~--~Lq~El~----~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD~E 83 (111)
T 2v66_B 13 QRLKYEVEALKEKLEHQYAQSYKQVS--VLEDDLS----QTRAIKEQLHKYVRELEQANDDLERAKRATIVSLEDFE 83 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH----HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHHHH
Confidence 34445566667777776666433211 1223333 35566778999999999999999999988887777755
No 68
>1qey_A MNT-C, protein (regulatory protein MNT); oligomerization, transcriptional control, P22 MNT repressor, gene regulation; NMR {Enterobacteria phage P22} SCOP: h.2.1.1
Probab=20.74 E-value=1.8e+02 Score=18.82 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHHH
Q psy17650 33 TSIEKIATVQVKMMQKV-NDLVKDV 56 (396)
Q Consensus 33 ~e~Ekla~~H~~La~kL-~EliK~l 56 (396)
.++|++|....+++.++ -|.+|++
T Consensus 2 DdaER~Ad~qse~vKk~vfdtLk~~ 26 (31)
T 1qey_A 2 NDAERLADEQSELVKKMVFDTLKDL 26 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36888888888877777 4665553
Done!