RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17650
(396 letters)
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC
domain, vesicle trafficking, membrane curvature,
endocytosis, exocytosis, F-BAR domain; 2.30A {Homo
sapiens}
Length = 276
Score = 109 bits (272), Expect = 2e-27
Identities = 82/204 (40%), Positives = 115/204 (56%), Gaps = 10/204 (4%)
Query: 1 ANIEENNSKLFGKLAKQSGGS---GTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVC 57
A IEE S+ KLAK + GTFAP+W V KTS EK+A + +++K+ +L+K+V
Sbjct: 45 ATIEEAYSRSMTKLAKSASNYSQLGTFAPVWDVFKTSTEKLANCHLDLVRKLQELIKEVQ 104
Query: 58 KYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKD 117
KY EE K HK KEE TLE VQTIQS T LQK+K+ Y KC E ++L+++ + ++
Sbjct: 105 KYGEEQVKSHKKTKEEVAGTLEAVQTIQSITQALQKSKENYNAKCVEQERLKKEGATQRE 164
Query: 118 LEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRND---DRDHKIHVEIK---- 170
+EKA +K KKA + YK V+KYAL K DFE++M+ + + D I I
Sbjct: 165 IEKAAVKSKKATDTYKLYVEKYALAKADFEQKMTETAQKFQDIEETHLIHIKEIIGSLSN 224
Query: 171 PLSANTNQISASVDELRVTAGNLT 194
+ QI +E N T
Sbjct: 225 AIKEIHLQIGQVHEEFINNMANTT 248
>3g9h_A Suppressor of yeast profilin deletion; SYP1, MU, adaptor,
endocytosis, phosphoprotein; HET: 1PG; 2.80A
{Saccharomyces cerevisiae}
Length = 328
Score = 87.1 bits (215), Expect = 3e-19
Identities = 21/114 (18%), Positives = 48/114 (42%), Gaps = 7/114 (6%)
Query: 285 ISPLNSTLTRSESEFKTSGVSTTNSSRGPSPLTIGMSD--TIPLAVAFHEIIHSYFRGTD 342
+S L+S +T E ++ S G S D L + E++++ F+
Sbjct: 27 VSTLSSQITGELRELNPQATGSSTSLVGQSLFQHSSLDTSQFGLNASIAEVLNASFKDGM 86
Query: 343 ETRCQVKMSGDMMLSFPAGIVSILTSNPSPAQLKFKVSNISHIENMLPNKQLIN 396
Q+ G++ L++ + ++P P + +++N + E ++ N+ I
Sbjct: 87 LQNSQL--IGEIALNYLPN---SVMNSPLPIGINLRINNGAKFEKVILNQAFIE 135
>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative
splicing, coiled coil, cytoplasmic vesicle, endocytosis,
phosphoprotein, polymorphism; 2.78A {Homo sapiens}
Length = 486
Score = 83.7 bits (205), Expect = 9e-18
Identities = 27/183 (14%), Positives = 64/183 (34%), Gaps = 28/183 (15%)
Query: 1 ANIEENNSKLFGKLAKQSGGS-------GTFAPLWQVLKTSIEKIATVQVKMMQK-VNDL 52
A IE+ ++ + A++ GT W + E+++ + +++ +ND
Sbjct: 49 ARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDD 108
Query: 53 VKDVCKYTEELQKK-----HKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDK 107
+ + + +E K K KE + + + ++ AK + C+E
Sbjct: 109 FEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKL 168
Query: 108 LRRDNGSAK---------------DLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMST 152
++K +EK + V K +E Y+ + + + + M
Sbjct: 169 AISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQ 228
Query: 153 SCK 155
+
Sbjct: 229 VFE 231
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC,
protein binding; 2.40A {Homo sapiens}
Length = 279
Score = 74.9 bits (183), Expect = 2e-15
Identities = 31/176 (17%), Positives = 66/176 (37%), Gaps = 21/176 (11%)
Query: 1 ANIEENNSKLFGKLAKQ---SGGSGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVC 57
A+ E +K K+A+ S + PL + +E ++ M+ V +D
Sbjct: 41 ASYELEFAKSTMKIAEAGKVSIQQQSHMPLQYIYTLFLEHDLSLGTLAMETVAQQKRDYY 100
Query: 58 KYTEELQK-KHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRD----- 111
+ + K KE + ++ + + L++A+ Y+Q+ E+L +
Sbjct: 101 QPLAAKRTEIEKWRKEFKEQWMKEQKRMNEAVQALRRAQLQYVQRSEDLRARSQGSPEDS 160
Query: 112 -----NGSAKDLEK-------AELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCK 155
G +K E+ A+ K ++A+ Y+ V + ++D E
Sbjct: 161 APQASPGPSKQQERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVS 216
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 74.8 bits (183), Expect = 3e-15
Identities = 31/182 (17%), Positives = 67/182 (36%), Gaps = 27/182 (14%)
Query: 1 ANIEENNSKLFGKLAKQSGG-------SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLV 53
A+IE+ +K +K+ G GT W+ + T E+I+ V +K+ + + V
Sbjct: 35 ADIEKGYAKSLRTWSKKWGELIEKGPEYGTTEAAWKGVLTESERISDVHMKIKDNLCNDV 94
Query: 54 KDVCKYTEELQKKH-----KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKL 108
K ++ H K K+ + + + ++KAK Y C+
Sbjct: 95 NSQIKTWQKENYHHTLMQIKERKDLEDLFKKAQKPWAKLLAKVEKAKADYHSACKTERSA 154
Query: 109 RR--------DNGSAKDLEKAELK-------VKKAQEDYKTIVDKYALIKEDFEKRMSTS 153
+ S ++K + V+K +E Y+ + + + + M++
Sbjct: 155 TNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMTSV 214
Query: 154 CK 155
+
Sbjct: 215 FE 216
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 74.5 bits (182), Expect = 5e-15
Identities = 23/183 (12%), Positives = 62/183 (33%), Gaps = 28/183 (15%)
Query: 1 ANIEENNSKLFGKLAKQSGGS-------GTFAPLWQVLKTSIEKIATVQVKMMQKVNDLV 53
A IE+ ++ + A++ GT W + E+++ + +++ + +
Sbjct: 56 ARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDD 115
Query: 54 KDVCK------YTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDK 107
+ K + +++ K KE + + + ++ AK + C+E
Sbjct: 116 FEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKL 175
Query: 108 LRRDNG--------SAKDLEK-------AELKVKKAQEDYKTIVDKYALIKEDFEKRMST 152
+ + L+K + V K +E Y+ + + + + M
Sbjct: 176 AISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQ 235
Query: 153 SCK 155
+
Sbjct: 236 VFE 238
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 74.1 bits (181), Expect = 7e-15
Identities = 18/183 (9%), Positives = 62/183 (33%), Gaps = 28/183 (15%)
Query: 1 ANIEENNSKLFGKLAKQSGGS-------GTFAPLWQVLKTSIEKIATVQVKMMQKVNDLV 53
A IE+ ++ A++ G+ GT W T+ E+++ + +++ +K++
Sbjct: 47 ARIEKAYAQQLADWARKWRGAVEKGPQYGTLEKAWHAFFTAAERLSELHLEVREKLHGPD 106
Query: 54 KDVCK------YTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDK 107
+ + + + + + + + + ++ +K Y ++
Sbjct: 107 SERVRTWQRGAFHRPVLGGFRASRAAEDGFRKAQKPWLKRLKEVEASKKSYHTARKDEKT 166
Query: 108 LRRDNGSAKD---------------LEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMST 152
+ AK + + + +K + Y+ + + + + M
Sbjct: 167 AQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDMEQ 226
Query: 153 SCK 155
+ +
Sbjct: 227 AFE 229
>3aco_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.70A
{Homo sapiens}
Length = 350
Score = 74.2 bits (181), Expect = 7e-15
Identities = 23/183 (12%), Positives = 62/183 (33%), Gaps = 28/183 (15%)
Query: 1 ANIEENNSKLFGKLAKQSGGS-------GTFAPLWQVLKTSIEKIATVQVKMMQKVNDLV 53
A IE+ ++ + A++ GT W + E+++ + +++ + +
Sbjct: 56 ARIEKAYAQQLTEWARRWRQLVEKGPQYGTVEKAWMAFMSEAERVSELHLEVKASLMNDD 115
Query: 54 KDVCK------YTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDK 107
+ K + +++ K KE + + + ++ AK + C+E
Sbjct: 116 FEKIKNWQKEAFHKQMMGGFKETKEAEDGFRKAQKPWAKKLKEVEAAKKAHHAACKEEKL 175
Query: 108 LRRDNG--------SAKDLEK-------AELKVKKAQEDYKTIVDKYALIKEDFEKRMST 152
+ + L+K + V K +E Y+ + + + + M
Sbjct: 176 AISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQ 235
Query: 153 SCK 155
+
Sbjct: 236 VFE 238
>2x3v_A Syndapin I, protein kinase C and casein kinase substrate in N
protein 1; BAR, N-WAsp, dynamin, pacsin 1, endocytosis;
2.45A {Mus musculus} PDB: 2x3w_A 2x3x_A
Length = 337
Score = 71.5 bits (174), Expect = 6e-14
Identities = 30/183 (16%), Positives = 66/183 (36%), Gaps = 28/183 (15%)
Query: 1 ANIEENNSKLFGKLAKQSGGS-------GTFAPLWQVLKTSIEKIATVQVK----MMQKV 49
A IE+ ++ AK+ G+ W + T +K++ + + ++ +
Sbjct: 47 AKIEKAYAQQLTDWAKRWRQLIEKGPQYGSLERAWGAMMTEADKVSELHQEVKNSLLNED 106
Query: 50 NDLVKDVCK--YTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDK 107
+ VK+ K Y +++ K KE + + + L+ AK Y C+E
Sbjct: 107 LEKVKNWQKDAYHKQIMGGFKETKEAEDGFRKAQKPWAKKMKELEAAKKAYHLACKEERL 166
Query: 108 LRR--------DNGSAKDLEKAELK-------VKKAQEDYKTIVDKYALIKEDFEKRMST 152
+ + + +K K V+K QE Y+ +++ + + M
Sbjct: 167 AMTREMNSKTEQSVTPEQQKKLVDKVDKCRQDVQKTQEKYEKVLEDVGKTTPQYMEGMEQ 226
Query: 153 SCK 155
+
Sbjct: 227 VFE 229
>2efl_A Formin-binding protein 1; EFC domain, structural genomics, NPPSFA,
national project on structural and functional analyses;
2.61A {Homo sapiens} SCOP: a.238.1.4
Length = 305
Score = 69.3 bits (169), Expect = 2e-13
Identities = 28/182 (15%), Positives = 68/182 (37%), Gaps = 30/182 (16%)
Query: 1 ANIEENNSKLFGKLAKQ----------SGGSGTFAPLWQVLKTSIEKIATVQVKMMQK-V 49
IE + +K L+K+ T + + A + +
Sbjct: 41 TEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMA 100
Query: 50 NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLR 109
+ ++ D+ +Y +EL+++ K + + Q I++ L+ +K + + C+E D+ +
Sbjct: 101 SQIIVDLARYVQELKQERKSNFHD---GRKAQQHIETCWKQLESSKRRFERDCKEADRAQ 157
Query: 110 --------RDNGSAKDLEKAELKVKKAQ-------EDYKTIVDKYALIKEDFEKR-MSTS 153
N + D+EKA + + DY +I+ K+ + ++ +
Sbjct: 158 QYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIPNI 217
Query: 154 CK 155
+
Sbjct: 218 FQ 219
>2efk_A CDC42-interacting protein 4; EFC domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 2.30A {Homo sapiens} SCOP: a.238.1.4
Length = 301
Score = 67.0 bits (163), Expect = 1e-12
Identities = 23/182 (12%), Positives = 64/182 (35%), Gaps = 30/182 (16%)
Query: 1 ANIEENNSKLFGKLAKQSGG----------SGTFAPLWQVLKTSIEKIATVQVKMMQK-V 49
+E+ +K L K+ + + + + A + + +
Sbjct: 34 TEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQRELVAENLS 93
Query: 50 NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLR 109
+ ++ KY++E++++ K+ +E Q +++ L+ +K + + C E +K
Sbjct: 94 VRVCLELTKYSQEMKQERKMHFQE---GRRAQQQLENGFKQLENSKRKFERDCREAEKAA 150
Query: 110 R--------DNGSAKDLEKAELKVKKAQ-------EDYKTIVDKY-ALIKEDFEKRMSTS 153
+ N + D+EKA+ + +Y + ++ + +M
Sbjct: 151 QTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQMPQI 210
Query: 154 CK 155
Sbjct: 211 FD 212
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural
genomics consortium, BCR, CR associated substrate,
transferase; 2.18A {Homo sapiens}
Length = 406
Score = 57.9 bits (139), Expect = 2e-09
Identities = 18/172 (10%), Positives = 51/172 (29%), Gaps = 19/172 (11%)
Query: 1 ANIEENNSKLFGKLAKQSGGS--------GTFAPLWQVLKTSIEKIATVQVKMMQKVNDL 52
+ + L ++ Q G + W + + E ++ + + + +N
Sbjct: 39 VKSDREYAGLLHHMSLQDSGGQSRAISPDSPISQSWAEITSQTEGLSRLLRQHAEDLNSG 98
Query: 53 VKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDN 112
+++ + EQ L+ + ++ + ++K K Y + + +R
Sbjct: 99 PLSKLSLLIRERQQLRKTYSEQWQQLQ-QELTKTHSQDIEKLKSQYRALARDSAQAKRKY 157
Query: 113 GSAKD----------LEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSC 154
A ++ K+ Y V L + + +
Sbjct: 158 QEASKDKDRDKAKDKYVRSLWKLFAHHNRYVLGVRAAQLHHQHHHQLLLPGL 209
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.6 bits (92), Expect = 0.002
Identities = 49/253 (19%), Positives = 77/253 (30%), Gaps = 76/253 (30%)
Query: 74 QGPTLEIVQT-IQSTTLVLQKAKDVYLQKCEELDKLR--RDN----GSAKDLEKAELKVK 126
T E VQ + T L K V + L N G + L L ++
Sbjct: 342 SNLTQEQVQDYVNKTNSHLPAGKQVEIS-------LVNGAKNLVVSGPPQSLYGLNLTLR 394
Query: 127 KAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSANTNQISASVDEL 186
KA+ A D +I +R K + S L
Sbjct: 395 KAK----------APSGLD-------QSRIPFSER--------KL------KFSNRF--L 421
Query: 187 RVTA---GNLTLSPL--SVKERRNSIDINPEVNFSQS----P-HKKING--LAELNHALM 234
V + S L + N + V+F+ P + +G L L+ ++
Sbjct: 422 PVASPFH-----SHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 235 KTMGDSASTEDKPDHFT-SKGSSGTRITVELG-LVASFMSVLTESTFQGRGH--ISPLNS 290
+ + D P + + T I ++ G AS + VLT G G I
Sbjct: 477 ERIVDCIIRL--PVKWETTTQFKATHI-LDFGPGGASGLGVLTHRNKDGTGVRVIVA--G 531
Query: 291 TLTRSESE---FK 300
TL + + FK
Sbjct: 532 TLDINPDDDYGFK 544
Score = 38.1 bits (88), Expect = 0.006
Identities = 30/166 (18%), Positives = 49/166 (29%), Gaps = 61/166 (36%)
Query: 89 LVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEK 148
+V + +Q D+L R N + + +QE + +V++
Sbjct: 1785 VVFYRGM--TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWL-- 1840
Query: 149 RMSTSCKIRNDDRDHKIHVEIKPLSANTN----QISASVDELRVTAGNLT-LSPLSVKER 203
VEI N N Q V AG+L L ++
Sbjct: 1841 ------------------VEI----VNYNVENQQY--------VAAGDLRALDTVT--NV 1868
Query: 204 RNSIDINPEVNFSQSPHKKINGLAELNHALMKTMGDSASTEDKPDH 249
N I + +KI+ + EL S S E+ H
Sbjct: 1869 LNFIKL-----------QKID-IIELQK--------SLSLEEVEGH 1894
Score = 32.3 bits (73), Expect = 0.38
Identities = 17/98 (17%), Positives = 35/98 (35%), Gaps = 24/98 (24%)
Query: 46 MQKVND--LVKDVCKYTEELQKKHKLVKEEQGPTLEIV-------QTIQSTTLV-LQKAK 95
M +N + + E LQ + V + G +EIV Q + + L L
Sbjct: 1809 MIAINPGRVAASFSQ--EALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTV- 1865
Query: 96 DVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYK 133
L+ ++ + ++ EL+ + E+ +
Sbjct: 1866 ------TNVLNFIK-----LQKIDIIELQKSLSLEEVE 1892
Score = 31.9 bits (72), Expect = 0.47
Identities = 27/119 (22%), Positives = 40/119 (33%), Gaps = 35/119 (29%)
Query: 239 DSASTEDKPDHFT-SKGSSGTRITV--ELGLVAS-----FMSVLTESTFQGRGHISPLNS 290
D+ ST +P T S GS + V +AS F +L E T P
Sbjct: 2 DAYST--RP--LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEP--- 54
Query: 291 TLTRSESE-------FKTSGVSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTD 342
+ +E + +S V P +G D + L + E + Y G D
Sbjct: 55 ---TTPAELVGKFLGYVSSLVE---------PSKVGQFDQV-LNLCLTEFENCYLEGND 100
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.4 bits (86), Expect = 0.003
Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 60 TEELQKKHKLVKEEQGPTLEI---VQTIQSTTLVLQKAKDV---YLQKCEELDKLRRDNG 113
T+E + K +EEQ L+ + + KD+ ++ E+++K + +N
Sbjct: 81 TQEPESIRKW-REEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
Query: 114 SAKDLEKAELKVKKAQEDYKTI 135
A +KA + Q D I
Sbjct: 140 IA---DKAFYQ----QPDADII 154
Score = 32.8 bits (74), Expect = 0.098
Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 13/62 (20%)
Query: 103 EELDKL--RRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDD 160
EE K D S ++ K KK E++ E EK KI N
Sbjct: 92 EEQRKRLQELDAASKVMEQEWREKAKKDLEEW------NQRQSEQVEKN-----KINNRI 140
Query: 161 RD 162
D
Sbjct: 141 AD 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 0.004
Identities = 33/250 (13%), Positives = 78/250 (31%), Gaps = 73/250 (29%)
Query: 27 LWQVLKTSIEKIATVQVKMMQKVNDLV---KDVCKYTEELQKK--HKLVKEEQGPTLEIV 81
L ++++S+ + + + + + L L ++K + + +V
Sbjct: 355 LTTIIESSLNVLEPAEYR--KMFDRLSVFPPSA-HIPTILLSLIWFDVIKSD---VMVVV 408
Query: 82 QTIQSTTLVLQKAK-------DVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQEDYKT 134
+ +LV ++ K +YL+ +L+ + L +++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLE------------NEYAL--------HRS 448
Query: 135 IVDKYALIKEDFEKRMSTSC--------------KIRNDDRDHK----------IHVEIK 170
IVD Y + K + I + +R + +I+
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIR 508
Query: 171 PLSANTNQISASVD---ELRVTAGNLTLSPLSVKERRNSID---INPEVNFSQSPHKKIN 224
S N + ++ +L+ + + + N+I E N S + +
Sbjct: 509 HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL- 567
Query: 225 GLAELNHALM 234
L ALM
Sbjct: 568 ----LRIALM 573
>3g9g_A Suppressor of yeast profilin deletion; SYP1, BAR domain, FCH,
adaptor, endocytosis, phosphoprotein; 2.40A
{Saccharomyces cerevisiae}
Length = 287
Score = 37.8 bits (87), Expect = 0.004
Identities = 14/151 (9%), Positives = 60/151 (39%), Gaps = 9/151 (5%)
Query: 1 ANIEENNSKLFGKLAKQSGG--SGTFAPLWQVLKTSIEKIATVQVKMMQKVNDLVKDVCK 58
AN++ N ++ K+ ++ A + + + ++++ + + ++ ++ V +
Sbjct: 70 ANLKRNYAQQLRKIIAENEDITKILNAQMIESNVLTPQEMSAFRFNSLGELRNVWDTVIE 129
Query: 59 YTEELQKKH-KLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQ---KCEELDKLRRDNGS 114
+ K + + ++ +++KD++ + ++ ++N +
Sbjct: 130 ELKSDLKSSTEYYNTLDQQVVRELKESVENNTSWRESKDLHSKLSKNAASIEHYSKNNEN 189
Query: 115 AKDLEKAELKVKKAQEDYKTIVDKYALIKED 145
+ LE+A ++ + + + + I +
Sbjct: 190 SSHLEEAR---RQWDQQSPYLFELFETIDYN 217
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 38.3 bits (89), Expect = 0.004
Identities = 27/170 (15%), Positives = 70/170 (41%), Gaps = 10/170 (5%)
Query: 28 WQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTE---ELQKKHKLVKEEQGPTLEIVQTI 84
+ + + +K+ +V K+ + D+ + +L K+ KL++E +
Sbjct: 964 LEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEE 1023
Query: 85 QSTTLVLQKAKDVYLQKCEEL-DKLRRDNGSAKDLEKAELKVKKAQEDYKTIVDKYALIK 143
+ L K K+ + EL +L+++ S ++LEK + K++ D + +
Sbjct: 1024 EEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQI 1083
Query: 144 EDFEKRMS------TSCKIRNDDRDHKIHVEIKPLSANTNQISASVDELR 187
+ + +++ + R +D + + +K + + IS ++L
Sbjct: 1084 AELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLE 1133
Score = 29.0 bits (65), Expect = 3.7
Identities = 25/172 (14%), Positives = 64/172 (37%), Gaps = 20/172 (11%)
Query: 36 EKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAK 95
++A + ++ + ++++ + + E Q+ K+ Q L++ + ++ QK +
Sbjct: 916 VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQ 975
Query: 96 DVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQE------------------DYKTIVD 137
+ ++ K+ D +D K +K E + + +
Sbjct: 976 LEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKN 1035
Query: 138 KYALIKEDFEKRMSTSCKIRND--DRDHKIHVEIKPLSANTNQISASVDELR 187
K+ + + E R+ K R + K+ E L ++ A + EL+
Sbjct: 1036 KHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELK 1087
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.4 bits (75), Expect = 0.051
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 61 EELQKKHKLVKEEQGPTLEIVQTIQ 85
++LQ KL ++ P L I T++
Sbjct: 23 KKLQASLKLYADDSAPALAIKATME 47
Score = 29.5 bits (65), Expect = 1.1
Identities = 10/42 (23%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 143 KEDFEKRMSTSCKIRNDDRDHKIHVEIKPLSANTNQISASVD 184
K+ K++ S K+ DD SA I A+++
Sbjct: 19 KQAL-KKLQASLKLYADD------------SAPALAIKATME 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.6 bits (72), Expect = 0.56
Identities = 14/103 (13%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
Query: 31 LKTSIEKIATVQ---VKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQST 87
L++ +E++ + +V L +++ K +EL + K + + +
Sbjct: 965 LRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024
Query: 88 TLVLQKAKDVYLQKCEELD-KLRRDNGSAKDLEKAELKVKKAQ 129
L++ + + EEL+ ++ + + +L + Q
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIHDQAKEITETMEKKLVEETKQ 1067
Score = 28.5 bits (64), Expect = 5.2
Identities = 21/138 (15%), Positives = 47/138 (34%), Gaps = 11/138 (7%)
Query: 28 WQVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQST 87
++ L + + +K+ V+ + EE + V Q ++ + + T
Sbjct: 944 YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003
Query: 88 TLVLQKAKDVYLQKCEELDKLRRDNGSAKDL---EKAELKVKKAQEDYKTIVDKYALIKE 144
+ ++ + E ++L + L EK EL + + + I E
Sbjct: 1004 QTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKE--------ITE 1055
Query: 145 DFEKRMSTSCKIRNDDRD 162
EK++ K D +
Sbjct: 1056 TMEKKLVEETKQLELDLN 1073
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 27.9 bits (62), Expect = 6.0
Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 12/149 (8%)
Query: 20 GSGTFAPLWQVLKTS-----IEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQ 74
G A LK S + K+ + +K + ++ K E +K+ + ++ E
Sbjct: 133 KQGEIAKFLS-LKPSEKLETVAKLL--GIDEFEKCYQKMGEIVK---EYEKRLERIEGEL 186
Query: 75 GPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDL-EKAELKVKKAQEDYK 133
E ++ L+K K+ + E LDK+RR G E V Q+
Sbjct: 187 NYKEESLKARLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLN 246
Query: 134 TIVDKYALIKEDFEKRMSTSCKIRNDDRD 162
++ L E ++ +
Sbjct: 247 EAFSEFDLPYSFVELTKDFEVRVHAPNGV 275
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 27.9 bits (63), Expect = 6.5
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 12 GKLAKQSGGSGTFAPLW 28
GK AKQSGG G + +
Sbjct: 503 GKHAKQSGGRGQYGHVV 519
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 27.8 bits (63), Expect = 7.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 12 GKLAKQSGGSGTFAPLW 28
GK +Q+GG G + +
Sbjct: 495 GKFIRQTGGRGQYGHVK 511
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 27.8 bits (63), Expect = 7.7
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 12 GKLAKQSGGSGTFAPLW 28
GK ++QSGG G + +
Sbjct: 494 GKFSRQSGGRGQYGDVH 510
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT
domain, intracellular trafficking, protein transport;
2.41A {Homo sapiens} SCOP: h.1.27.2
Length = 112
Score = 26.4 bits (57), Expect = 8.6
Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 4/86 (4%)
Query: 29 QVLKTSIEKIATVQVKMMQKVNDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTT 88
Q+ KT +K ++ + Q D + Q L++E Q + + +Q
Sbjct: 21 QLEKTMKDK-QELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQAKRDVQEQM 79
Query: 89 LVLQKAKDVYLQKCEELDKLRRDNGS 114
VL ++++ Q EEL +L++DN S
Sbjct: 80 AVLMQSRE---QVSEELVRLQKDNDS 102
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 27.5 bits (62), Expect = 9.0
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 12 GKLAKQSGGSGTFAPLW 28
GK KQ+GG G + +W
Sbjct: 468 GKYKKQTGGHGQYGDVW 484
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.127 0.346
Gapped
Lambda K H
0.267 0.0496 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,464,379
Number of extensions: 314976
Number of successful extensions: 654
Number of sequences better than 10.0: 1
Number of HSP's gapped: 622
Number of HSP's successfully gapped: 57
Length of query: 396
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 300
Effective length of database: 4,021,377
Effective search space: 1206413100
Effective search space used: 1206413100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.7 bits)