RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17650
         (396 letters)



>d2efla1 a.238.1.4 (A:1-288) Formin-binding protein 1, FNBP1 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 288

 Score = 59.8 bits (144), Expect = 9e-11
 Identities = 26/178 (14%), Positives = 67/178 (37%), Gaps = 15/178 (8%)

Query: 1   ANIEENNSKLFGKLAKQSGGS----------GTFAPLWQVLKTSIEKIATVQVKMMQKV- 49
             IE + +K    L+K+               T    +      +   A     + + + 
Sbjct: 36  TEIELSYAKQLRNLSKKYQPKKNSKEEEEYKYTSCKAFISNLNEMNDYAGQHEVISENMA 95

Query: 50  NDLVKDVCKYTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLR 109
           + ++ D+ +Y +EL+++ K    +     +  Q I++    L+ +K  + + C+E D+ +
Sbjct: 96  SQIIVDLARYVQELKQERKSNFHD---GRKAQQHIETCWKQLESSKRRFERDCKEADRAQ 152

Query: 110 RDNGSAK-DLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKIH 166
           +       D+   +  V+KA++  +         K D+   +      +++     I 
Sbjct: 153 QYFEKMDADINVTKADVEKARQQAQIRHQMAEDSKADYSSILQKFNHEQHEYYHTHIP 210


>d2efka1 a.238.1.4 (A:10-288) CDC42-interacting protein 4, CIP4
           {Human (Homo sapiens) [TaxId: 9606]}
          Length = 279

 Score = 57.2 bits (137), Expect = 7e-10
 Identities = 21/177 (11%), Positives = 65/177 (36%), Gaps = 15/177 (8%)

Query: 1   ANIEENNSKLFGKLAKQSGG----------SGTFAPLWQVLKTSIEKIATVQVKMMQKVN 50
             +E+  +K    L K+               +    +  +   +   A  +  + + ++
Sbjct: 27  TEVEQAYAKQLRSLVKKYLPKRPAKDDPESKFSQQQSFVQILQEVNDFAGQRELVAENLS 86

Query: 51  DLVKDVCK-YTEELQKKHKLVKEEQGPTLEIVQTIQSTTLVLQKAKDVYLQKCEELDKLR 109
             V      Y++E++++ K+  +E        Q +++    L+ +K  + + C E +K  
Sbjct: 87  VRVCLELTKYSQEMKQERKMHFQE---GRRAQQQLENGFKQLENSKRKFERDCREAEKAA 143

Query: 110 RDNGSA-KDLEKAELKVKKAQEDYKTIVDKYALIKEDFEKRMSTSCKIRNDDRDHKI 165
           +      +D+   +  V+KA++            K ++  ++    + +      ++
Sbjct: 144 QTAERLDQDINATKADVEKAKQQAHLRSHMAEESKNEYAAQLQRFNRDQAHFYFSQM 200


>d1vp7a_ a.7.13.1 (A:) Exonuclease VII small subunit XseB
           {Bordetella pertussis [TaxId: 520]}
          Length = 68

 Score = 26.9 bits (60), Expect = 0.98
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 79  EIVQTIQSTTLVLQKAKDVYLQKCEELDKLRRDNGSAKDLEKAELKVKKAQED 131
            +V  +++ TL L+++   Y        +L R       L +AE +VK  + D
Sbjct: 17  SLVSAMENGTLPLEQSLSAY----RRGVELARV--CQDRLAQAEQQVKVLEGD 63


>d1iz5a2 d.131.1.2 (A:126-246) Proliferating cell nuclear antigen
           (PCNA) {Archaeon Pyrococcus furiosus [TaxId: 2261]}
          Length = 121

 Score = 25.6 bits (56), Expect = 5.5
 Identities = 18/100 (18%), Positives = 33/100 (33%), Gaps = 13/100 (13%)

Query: 291 TLTRSESEFKTSGVSTTNSSRGPSPLTIGMSDTIPLAVAFHEIIHSYFRGTDETRCQVKM 350
                E+EF       T        + + + D   L +   E   S +         V  
Sbjct: 31  KFIARENEFIMKAEGETQEVE----IKLTLEDEGLLDIEVQEETKSAYG--------VSY 78

Query: 351 SGDMMLSFP-AGIVSILTSNPSPAQLKFKVSNISHIENML 389
             DM+     A  V+I   N  P Q+++ + +   +  +L
Sbjct: 79  LSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLL 118


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.127    0.346 

Gapped
Lambda     K      H
   0.267   0.0531    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,314,789
Number of extensions: 59148
Number of successful extensions: 134
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 21
Length of query: 396
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 309
Effective length of database: 1,213,086
Effective search space: 374843574
Effective search space used: 374843574
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.0 bits)