BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17653
(379 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/294 (23%), Positives = 121/294 (41%), Gaps = 38/294 (12%)
Query: 109 MSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQIIR 168
+ L +A C+A + F L T +++Q+Q + + +++ G+ G ++R
Sbjct: 3 VKFLGAGTAACIADLIT-FPL-DTAKVRLQIQGESQGLVRTAASAQYR-GVLGTILTMVR 59
Query: 169 QDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEECGT------------ 216
+G R L+ G + R+M V G Y++ + K E G
Sbjct: 60 TEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYT---KGSEHAGIGSRLLAGSTTGA 116
Query: 217 --------SDCDEFDFDSRKINLG------LFGLTKQIIRQDGLRGLFKGFGPTVAREMP 262
+D + F ++ G K I R++G+RGL+KG P VAR
Sbjct: 117 LAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176
Query: 263 GYFVFFGGYEATRTLLAPADKPKEECGALATMAAGGVGGIALWTVIFPVDVIKSRVQASS 322
Y+ + L A+ ++ T A G G + PVDV+K+R S+
Sbjct: 177 VNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGA--GFCTTVIASPVDVVKTRYMNSA 234
Query: 323 --QQNTANFVTQMTDIVKKEGVLALYNGLQPTLIRTIPASAVLFLVYEYSKKIM 374
Q ++A +++KEG A Y G P+ +R + V+F+ YE K+ +
Sbjct: 235 LGQYHSAGHCA--LTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 60.1 bits (144), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 55/199 (27%), Positives = 90/199 (45%), Gaps = 19/199 (9%)
Query: 19 AGSLGGVALVYVGQPLDTVKVKMQTYPQL-----YSSMIDCCKKVWRDEGLVRGLYAGTI 73
AGS G V V QP D VKV+ Q + Y S ++ K + R+EG +RGL+ GT
Sbjct: 110 AGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEG-IRGLWKGTS 168
Query: 74 PAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTE 133
P NVA N+++ +I + N+ + + ++ A F ++ P +
Sbjct: 169 P----NVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVD 224
Query: 134 LLKIQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVF 193
++K + + LG + G LT ++R++G R +KGF P+ R V
Sbjct: 225 VVKTRYM-----NSALGQYH--SAGHCALT--MLRKEGPRAFYKGFMPSFLRLGSWNVVM 275
Query: 194 FGGYEATRTLLAPADKPKE 212
F YE + L A + +E
Sbjct: 276 FVTYEQLKRALMAAYQSRE 294
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 111/293 (37%), Gaps = 58/293 (19%)
Query: 33 PLDTVKVKMQTYPQ-----------LYSSMIDCCKKVWRDEGLVRGLYAGTIPAILANVA 81
PLDT KV++Q + Y ++ + R EG R LY G + + ++
Sbjct: 21 PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG-PRSLYNGLVAGLQRQMS 79
Query: 82 ENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTELLKIQLQA 141
SV Y ++ TK E I + AG + PT+++K++ QA
Sbjct: 80 FASVRIGLYDSVKQFY-----TKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQA 134
Query: 142 AHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAR---------------- 185
S + K I R++G+RGL+KG P VAR
Sbjct: 135 QARAGGGRRYQSTVEA-----YKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK 189
Query: 186 -----------EMPGYFV-FFGGYEATRTLLAPADKPKEECGTSDCDEFDFDSRKINLGL 233
++P +F FG T + +P D K S ++ + G
Sbjct: 190 DTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYH------SAGH 243
Query: 234 FGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKE 286
LT ++R++G R +KGF P+ R V F YE + L A + +E
Sbjct: 244 CALT--MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSRE 294
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 61.6 bits (148), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 74/301 (24%), Positives = 121/301 (40%), Gaps = 44/301 (14%)
Query: 107 EDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQI 166
+ +S L + AG +A+ S + P E +K+ LQ H A+K + K G+ +I
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQH--ASKQISAEKQYKGIIDCVVRI 60
Query: 167 IRQDGLRGLFKGFGPTVAREMPGY---FVFFGGYEATRTLLAPADKPKE----------- 212
++ G ++G V R P F F Y+ + L D+ K+
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYK--QIFLGGVDRHKQFWRYFAGNLAS 118
Query: 213 ---ECGTSDCDEFDFDSRKINL--------------GLFGLTKQIIRQDGLRGLFKGFGP 255
TS C + D + L GL +I + DGLRGL++GF
Sbjct: 119 GGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNV 178
Query: 256 TVAREMPGYFVFFGGYEATRTLLAPADKPKEECGALATMAAGGVGGIALWTVIFPVDVIK 315
+V + +FG Y+ + +L PK ++ M A V +A V +P D ++
Sbjct: 179 SVQGIIIYRAAYFGVYDTAKGMLP---DPKNVHIIVSWMIAQTVTAVA-GLVSYPFDTVR 234
Query: 316 SRVQASSQQNTANFVTQMT-----DIVKKEGVLALYNGLQPTLIRTIPASAVLFLVYEYS 370
R+ S + A+ + T I K EG A + G ++R + + VL L E
Sbjct: 235 RRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLVLYDEIK 294
Query: 371 K 371
K
Sbjct: 295 K 295
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 116/294 (39%), Gaps = 60/294 (20%)
Query: 16 DFTAGSLGGVALVYVGQPLDTVKVKMQ--------TYPQLYSSMIDCCKKVWRDEGLVRG 67
DF AG + P++ VK+ +Q + + Y +IDC ++ +++G +
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL-S 68
Query: 68 LYAGTIPAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLAS--FFS 125
+ G + ++ ++ FA F K + G V+ AG LAS
Sbjct: 69 FWRGNLANVIRYFPTQALNFA---FKDKYKQIFLG--GVDRHKQFWRYFAGNLASGGAAG 123
Query: 126 SFTLC---PTELLKIQLQA------AHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLF 176
+ +LC P + + +L A A E T LGN +TK I + DGLRGL+
Sbjct: 124 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNC---------ITK-IFKSDGLRGLY 173
Query: 177 KGFGPTVAREMPGYFVFFGGYEATRTLLAPADK----------PKEECGTSDCDEFDFDS 226
+GF +V + +FG Y+ + +L P K + + + FD+
Sbjct: 174 QGFNVSVQGIIIYRAAYFGVYDTAKGML-PDPKNVHIIVSWMIAQTVTAVAGLVSYPFDT 232
Query: 227 RKINL--------------GLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFV 266
+ + G ++I + +G + FKG V R M G FV
Sbjct: 233 VRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFV 286
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 12/184 (6%)
Query: 200 TRTLLAPADKPKEECGTSDCDEFDFDSRKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAR 259
++T +AP ++ K + + K G+ +I ++ G ++G V R
Sbjct: 21 SKTAVAPIERVKLLLQVQHASK-QISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 79
Query: 260 EMPGY---FVFFGGYEATRTLLAPADKPKEECGALA-TMAAGGVGGIALWTVIFPVDVIK 315
P F F Y+ + L D+ K+ A +A+GG G ++P+D +
Sbjct: 80 YFPTQALNFAFKDKYK--QIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFAR 137
Query: 316 SRVQA-----SSQQNTANFVTQMTDIVKKEGVLALYNGLQPTLIRTIPASAVLFLVYEYS 370
+R+ A ++Q+ +T I K +G+ LY G ++ I A F VY+ +
Sbjct: 138 TRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTA 197
Query: 371 KKIM 374
K ++
Sbjct: 198 KGML 201
>pdb|3OML|A Chain A, Structure Of Full-Length Peroxisomal Multifunctional
Enzyme Type 2 From Drosophila Melanogaster
Length = 613
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 198 EATRTLLAPADKPKEECGTSDCDEFDFDSRKINLGLFGLTKQIIRQDGLRGLFKGFGPTV 257
EA+ TLL +K KE G + D F+F+S+++ G+ + +R L++
Sbjct: 301 EASGTLLEVLEKLKEGGGDAIEDAFEFNSKELITYALGIGASVKNAKDMRFLYENDADFA 360
Query: 258 AREMPGYFVFFG 269
A +P +FV G
Sbjct: 361 A--IPTFFVLPG 370
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,725,844
Number of Sequences: 62578
Number of extensions: 438713
Number of successful extensions: 866
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 11
length of query: 379
length of database: 14,973,337
effective HSP length: 100
effective length of query: 279
effective length of database: 8,715,537
effective search space: 2431634823
effective search space used: 2431634823
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)