Query psy17653
Match_columns 379
No_of_seqs 142 out of 1937
Neff 9.4
Searched_HMMs 29240
Date Fri Aug 16 19:34:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17653.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17653hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 100.0 6.8E-53 2.3E-57 388.9 23.8 280 11-374 5-297 (297)
2 2lck_A Mitochondrial uncouplin 100.0 2.6E-53 8.8E-58 392.6 21.0 275 15-376 3-288 (303)
3 1okc_A ADP, ATP carrier protei 100.0 3.4E-33 1.2E-37 257.2 16.7 191 109-375 5-202 (297)
4 2lck_A Mitochondrial uncouplin 100.0 8.9E-33 3E-37 255.0 15.2 182 11-206 102-288 (303)
5 3tgu_G UQCRQ, mitochondrial ub 24.3 48 0.0016 23.0 2.4 36 341-376 33-68 (81)
6 1pp9_G Ubiquinol-cytochrome C 18.8 74 0.0025 22.0 2.5 37 340-376 32-68 (81)
7 3fbl_A Putative uncharacterize 14.6 2.1E+02 0.0072 18.4 3.6 22 50-72 3-24 (82)
8 3cx5_H Cytochrome B-C1 complex 13.8 1.1E+02 0.0038 21.7 2.4 36 340-375 42-77 (93)
9 2a3d_A Protein (de novo three- 10.6 1.7E+02 0.0058 18.4 2.2 14 33-46 10-23 (73)
10 1y9i_A Low temperature require 9.2 4E+02 0.014 21.3 4.5 43 263-305 112-157 (178)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=6.8e-53 Score=388.88 Aligned_cols=280 Identities=21% Similarity=0.322 Sum_probs=236.5
Q ss_pred hhhHHHHHhhhhhhHHHHhhcChHHHHHHHHhcCCC--------CCCcHHHHHHHHHHhhCcccccccchhHhHhHHhHH
Q psy17653 11 KSGVIDFTAGSLGGVALVYVGQPLDTVKVKMQTYPQ--------LYSSMIDCCKKVWRDEGLVRGLYAGTIPAILANVAE 82 (379)
Q Consensus 11 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~Q~~~~--------~~~~~~~~~~~i~~~~G~~~~ly~G~~~~l~~~~~~ 82 (379)
.+.+.++++|++|++++.++++|+|++|+|+|++.. .|++.++++++++++||+ ++||||+.+++++.++.
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~-~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF-LSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCG-GGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccch-hheecccHHHHHHHHHH
Confidence 456789999999999999999999999999999752 578999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcchhhhhcCCCccccccHHHH
Q psy17653 83 NSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGL 162 (379)
Q Consensus 83 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~ 162 (379)
++++|.+||.+++.+....+............+++|++|++++.++++|+|+||+|+|++.....
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~--------------- 148 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGA--------------- 148 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSST---------------
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCC---------------
Confidence 99999999999995432211111111234678999999999999999999999999998754210
Q ss_pred HHHHHhhhccccccccchhhhhhcchhhHHHHhHHHHHHHhhCCCCCCCccccCCCCcccccccccccccHHHHHHHHHh
Q psy17653 163 TKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEECGTSDCDEFDFDSRKINLGLFGLTKQIIR 242 (379)
Q Consensus 163 ~~~i~~~~G~~~ly~G~~~~~~~~~p~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (379)
...++.+.++++++|++
T Consensus 149 ---------------------------------------------------------------~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 149 ---------------------------------------------------------------AQREFTGLGNCITKIFK 165 (297)
T ss_dssp ---------------------------------------------------------------TTCSCSSHHHHHHHHHH
T ss_pred ---------------------------------------------------------------cCcCCCCHHHHHHHHHH
Confidence 01345678888888999
Q ss_pred hcCcccccccccchhcccccchhHHHHHHHHHHHHhCCCCCCccchhhHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCC
Q psy17653 243 QDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEECGALATMAAGGVGGIALWTVIFPVDVIKSRVQASS 322 (379)
Q Consensus 243 ~~G~~gl~~G~~~~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~t~Pldvi~~r~q~~~ 322 (379)
+||++|||||+.|+++|++|..+++|.+||.+++.+.+.. ..+....+++|++||++++++++|+||||+|||.+.
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~----~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~ 241 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPK----NVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQS 241 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGGG----CSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccCC----CccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcC
Confidence 9999999999999999999999999999999999775432 223567889999999999999999999999999875
Q ss_pred C-----CCcccHHHHHHHHHHhhccccccCChHHHHHHHhhhhhHHHHHHHHHHHHH
Q psy17653 323 Q-----QNTANFVTQMTDIVKKEGVLALYNGLQPTLIRTIPASAVLFLVYEYSKKIM 374 (379)
Q Consensus 323 ~-----~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~ 374 (379)
. ..|.++++|+++|+++||++|||||+.++++|. +.++++|.+||.+|+.+
T Consensus 242 ~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 242 GRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp TCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 3 368999999999999999999999999999996 57889999999998753
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.6e-53 Score=392.62 Aligned_cols=275 Identities=24% Similarity=0.338 Sum_probs=244.3
Q ss_pred HHHHhhhhhhHHHHhhcChHHHHHHHHhcCCC-----------CCCcHHHHHHHHHHhhCcccccccchhHhHhHHhHHH
Q psy17653 15 IDFTAGSLGGVALVYVGQPLDTVKVKMQTYPQ-----------LYSSMIDCCKKVWRDEGLVRGLYAGTIPAILANVAEN 83 (379)
Q Consensus 15 ~~~~~g~~a~~~~~~~~~Pld~ik~~~Q~~~~-----------~~~~~~~~~~~i~~~~G~~~~ly~G~~~~l~~~~~~~ 83 (379)
.++++|++|++++.+++||||++|+|+|++.. .|++.++++++|+++||+ ++||||+.+++++.++..
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~-~glyrG~~~~l~~~~~~~ 81 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP-RSLYNGLVAGLQRQMSFA 81 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCH-HHHHSSHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCH-HHHHcCCHHHHHHHHHHH
Confidence 36899999999999999999999999999753 578999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcchhhhhcCCCccccccHHHHH
Q psy17653 84 SVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLT 163 (379)
Q Consensus 84 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~ 163 (379)
+++|.+||.+++.+.+.. ...+....+++|++|++++.++++|+|+||+|+|++....
T Consensus 82 ~i~f~~ye~~k~~~~~~~-----~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~----------------- 139 (303)
T 2lck_A 82 SVRIGLYDSVKQFYTKGS-----EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAG----------------- 139 (303)
T ss_dssp HHTTTHHHHHHHHHSCCC-----SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCC-----------------
T ss_pred HHHHHHHHHHHHHHhcCC-----cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccC-----------------
Confidence 999999999999875321 1356788999999999999999999999999999976421
Q ss_pred HHHHhhhccccccccchhhhhhcchhhHHHHhHHHHHHHhhCCCCCCCccccCCCCcccccccccccccHHHHHHHHHhh
Q psy17653 164 KQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEECGTSDCDEFDFDSRKINLGLFGLTKQIIRQ 243 (379)
Q Consensus 164 ~~i~~~~G~~~ly~G~~~~~~~~~p~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 243 (379)
...++.+.++++++|+++
T Consensus 140 --------------------------------------------------------------~~~~~~~~~~~~~~i~~~ 157 (303)
T 2lck_A 140 --------------------------------------------------------------GGRRYQSTVEAYKTIARE 157 (303)
T ss_dssp --------------------------------------------------------------CSSSCCCHHHHHHHHHHH
T ss_pred --------------------------------------------------------------CCCCCCCHHHHHHHHHHh
Confidence 012456778888888888
Q ss_pred cCcccccccccchhcccccchhHHHHHHHHHHHHhCCCCCCccchhhHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCC
Q psy17653 244 DGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEECGALATMAAGGVGGIALWTVIFPVDVIKSRVQASSQ 323 (379)
Q Consensus 244 ~G~~gl~~G~~~~~~r~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~t~Pldvi~~r~q~~~~ 323 (379)
||++|||||+.|+++|++|..+++|.+||.+++.+.+....+ .+....+++|++||++++++++|+|+||+|||.+..
T Consensus 158 eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~--~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~ 235 (303)
T 2lck_A 158 EGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMT--DDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL 235 (303)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCC--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCC--CchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc
Confidence 899999999999999999999999999999999887643222 244678999999999999999999999999999887
Q ss_pred CCcccHHHHHHHHHHhhccccccCChHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy17653 324 QNTANFVTQMTDIVKKEGVLALYNGLQPTLIRTIPASAVLFLVYEYSKKIMNT 376 (379)
Q Consensus 324 ~~~~~~~~~~~~i~~~eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 376 (379)
..|.++++|+++|+++||++|||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 236 ~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 236 GQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp SSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred cccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 77999999999999999999999999999999999999999999999976654
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=3.4e-33 Score=257.16 Aligned_cols=191 Identities=23% Similarity=0.369 Sum_probs=162.0
Q ss_pred ccHHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcchhhhhcCCCccccccHHHHHHHHHhhhccccccccchhhhhhcch
Q psy17653 109 MSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAREMP 188 (379)
Q Consensus 109 ~~~~~~~~~g~~a~~~~~~v~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~p 188 (379)
.+.+..+++|++|++++.++++|+|+||+|+|++.....
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~----------------------------------------- 43 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQ----------------------------------------- 43 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSS-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccc-----------------------------------------
Confidence 456778999999999999999999999999999764210
Q ss_pred hhHHHHhHHHHHHHhhCCCCCCCccccCCCCcccccccccccccHHHHHHHHHhhcCcccccccccchhcccccchhHHH
Q psy17653 189 GYFVFFGGYEATRTLLAPADKPKEECGTSDCDEFDFDSRKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFF 268 (379)
Q Consensus 189 ~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~G~~gl~~G~~~~~~r~~~~~~~~~ 268 (379)
.....++.+.++++++|+++||++|||||+.|++++++|..+++|
T Consensus 44 -----------------------------------~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f 88 (297)
T 1okc_A 44 -----------------------------------ISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNF 88 (297)
T ss_dssp -----------------------------------CCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHH
T ss_pred -----------------------------------cccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHH
Confidence 001135667888888999999999999999999999999999999
Q ss_pred HHHHHHHHHhCC-CCCCcc-chhhHHHHHHHHHHHHHHHhhhccHHHHHHHHhcCCC-----CCcccHHHHHHHHHHhhc
Q psy17653 269 GGYEATRTLLAP-ADKPKE-ECGALATMAAGGVGGIALWTVIFPVDVIKSRVQASSQ-----QNTANFVTQMTDIVKKEG 341 (379)
Q Consensus 269 ~~y~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~ag~~a~~~t~Pldvi~~r~q~~~~-----~~~~~~~~~~~~i~~~eG 341 (379)
.+||.+++.+.+ .+..+. .......+++|++||++++++++|+|+||+|||++.. ..|.++++++++|+++||
T Consensus 89 ~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG 168 (297)
T 1okc_A 89 AFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDG 168 (297)
T ss_dssp HHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhcc
Confidence 999999995433 222111 1244678999999999999999999999999999752 468999999999999999
Q ss_pred cccccCChHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy17653 342 VLALYNGLQPTLIRTIPASAVLFLVYEYSKKIMN 375 (379)
Q Consensus 342 ~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~ 375 (379)
++|||||+.++++|.+|..++.|.+||.+++.+.
T Consensus 169 ~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~ 202 (297)
T 1okc_A 169 LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLP 202 (297)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999998654
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=8.9e-33 Score=255.01 Aligned_cols=182 Identities=25% Similarity=0.363 Sum_probs=165.2
Q ss_pred hhhHHHHHhhhhhhHHHHhhcChHHHHHHHHhcCCC-----CCCcHHHHHHHHHHhhCcccccccchhHhHhHHhHHHHH
Q psy17653 11 KSGVIDFTAGSLGGVALVYVGQPLDTVKVKMQTYPQ-----LYSSMIDCCKKVWRDEGLVRGLYAGTIPAILANVAENSV 85 (379)
Q Consensus 11 ~~~~~~~~~g~~a~~~~~~~~~Pld~ik~~~Q~~~~-----~~~~~~~~~~~i~~~~G~~~~ly~G~~~~l~~~~~~~~i 85 (379)
.+....+++|++|++++.++++|+|++|+|+|++.. .|++.++++++|+++||+ ++||||+.+.+++.++..++
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~-~glyrG~~~~l~~~~~~~~i 180 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI-RGLWKGTSPNVARNAIVNCA 180 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcCh-hhhhCCccHHHHHHHHHHHH
Confidence 456788999999999999999999999999999864 689999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCCccHHHHHHHHHHHHHhHhhhcccHHHHHHHHHhcchhhhhcCCCccccccHHHHHHH
Q psy17653 86 LFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQ 165 (379)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~v~~P~d~vk~r~q~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (379)
+|.+||.+++.+.+.. ....+....+++|++|++++.++++|+|+||+|||.+... .|.++++|+++
T Consensus 181 ~f~~ye~~k~~l~~~~----~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~---------~y~~~~~~~~~ 247 (303)
T 2lck_A 181 ELVTYDLIKDTLLKAN----LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG---------QYHSAGHCALT 247 (303)
T ss_dssp HHHHHHHHHHTTTTTT----SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS---------SCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc----CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcccc---------ccCCHHHHHHH
Confidence 9999999999765322 1234567889999999999999999999999999997642 37899999999
Q ss_pred HHhhhccccccccchhhhhhcchhhHHHHhHHHHHHHhhCC
Q psy17653 166 IIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAP 206 (379)
Q Consensus 166 i~~~~G~~~ly~G~~~~~~~~~p~~~i~~~~y~~~~~~~~~ 206 (379)
|+++||++|||||+.|++++.+|..++.|.+||.+++.+.+
T Consensus 248 i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 248 MLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987753
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=24.28 E-value=48 Score=22.97 Aligned_cols=36 Identities=8% Similarity=0.337 Sum_probs=27.4
Q ss_pred ccccccCChHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy17653 341 GVLALYNGLQPTLIRTIPASAVLFLVYEYSKKIMNT 376 (379)
Q Consensus 341 G~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 376 (379)
|+.+.+|-+..+++.++|..++...+|+..++.-+.
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 444455556678889999999999999988876543
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=18.77 E-value=74 Score=21.98 Aligned_cols=37 Identities=16% Similarity=0.473 Sum_probs=29.7
Q ss_pred hccccccCChHHHHHHHhhhhhHHHHHHHHHHHHHhh
Q psy17653 340 EGVLALYNGLQPTLIRTIPASAVLFLVYEYSKKIMNT 376 (379)
Q Consensus 340 eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~~ 376 (379)
.|+...+|-+.-+++.++|..++...+|+...+.-+.
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~ 68 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEK 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHH
Confidence 4566677778888889999999999999988876543
No 7
>3fbl_A Putative uncharacterized protein; AFV1, archaeal virus, extremophiles, lipothrixviridae, structural protein, DNA-binding protein; 1.95A {Acidianus filamentous virus 1}
Probab=14.60 E-value=2.1e+02 Score=18.36 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=15.9
Q ss_pred cHHHHHHHHHHhhCcccccccch
Q psy17653 50 SMIDCCKKVWRDEGLVRGLYAGT 72 (379)
Q Consensus 50 ~~~~~~~~i~~~~G~~~~ly~G~ 72 (379)
...-++++|.+++|+ ...-+|+
T Consensus 3 klrlaikeicktdgi-pnikwgm 24 (82)
T 3fbl_A 3 KLRLAIKEICKTDGI-PNIKWGM 24 (82)
T ss_dssp HHHHHHHHHHHHTTC-CGGGHHH
T ss_pred hHHHHHHHHHccCCC-CcchhHH
Confidence 345678999999999 6655443
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=13.77 E-value=1.1e+02 Score=21.72 Aligned_cols=36 Identities=3% Similarity=0.244 Sum_probs=30.0
Q ss_pred hccccccCChHHHHHHHhhhhhHHHHHHHHHHHHHh
Q psy17653 340 EGVLALYNGLQPTLIRTIPASAVLFLVYEYSKKIMN 375 (379)
Q Consensus 340 eG~~~ly~G~~~~~~~~~~~~~i~~~~ye~~~~~~~ 375 (379)
+|+.+.+|-+.-+++.++|..++...+|+..++.-+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e 77 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNE 77 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHH
Confidence 467778888888888999999999999988877544
No 9
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=10.57 E-value=1.7e+02 Score=18.38 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=10.2
Q ss_pred hHHHHHHHHhcCCC
Q psy17653 33 PLDTVKVKMQTYPQ 46 (379)
Q Consensus 33 Pld~ik~~~Q~~~~ 46 (379)
-+..||+|+|+-..
T Consensus 10 rlaaiktrlqalgg 23 (73)
T 2a3d_A 10 RLAAIKTRLQALGG 23 (73)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcC
Confidence 45678999998544
No 10
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=9.24 E-value=4e+02 Score=21.33 Aligned_cols=43 Identities=9% Similarity=-0.027 Sum_probs=28.0
Q ss_pred chhHHHHHHHHHHHHhC---CCCCCccchhhHHHHHHHHHHHHHHH
Q psy17653 263 GYFVFFGGYEATRTLLA---PADKPKEECGALATMAAGGVGGIALW 305 (379)
Q Consensus 263 ~~~~~~~~y~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ag~~a~ 305 (379)
.....|..||..|.... +.........++..+++|.+|++++.
T Consensus 112 ~gf~~Fr~fDi~KPgpI~~ld~~~~gg~gimlDDivAgi~A~~~~~ 157 (178)
T 1y9i_A 112 IGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASR 157 (178)
T ss_dssp GGHHHHHHHHHHCCTHHHHTTCCCSSCCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccchhHHhhhcccCCCCcchHHHHHHHHHHHHHHH
Confidence 45677888898886432 22222334456888999988887654
Done!