RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17653
(379 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 82.3 bits (204), Expect = 2e-19
Identities = 34/91 (37%), Positives = 53/91 (58%), Gaps = 3/91 (3%)
Query: 289 GALATMAAGGVGGIALWTVIFPVDVIKSRVQASSQQNTA---NFVTQMTDIVKKEGVLAL 345
LA++ AGG+ G TV +P+DV+K+R+Q+S+ + + I K+EG+ L
Sbjct: 4 SFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGL 63
Query: 346 YNGLQPTLIRTIPASAVLFLVYEYSKKIMNT 376
Y GL P L+R PA+A+ F YE KK++
Sbjct: 64 YKGLLPNLLRVAPAAAIYFGTYETLKKLLLK 94
Score = 81.9 bits (203), Expect = 2e-19
Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 5/93 (5%)
Query: 10 WKSGVIDFTAGSLGGVALVYVGQPLDTVKVKMQ----TYPQLYSSMIDCCKKVWRDEGLV 65
S + AG + G V PLD VK ++Q + Y ++DC KK++++EG +
Sbjct: 2 PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEG-I 60
Query: 66 RGLYAGTIPAILANVAENSVLFACYGFCQKIIS 98
RGLY G +P +L ++ F Y +K++
Sbjct: 61 RGLYKGLLPNLLRVAPAAAIYFGTYETLKKLLL 93
Score = 78.8 bits (195), Expect = 2e-18
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 107 EDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQI 166
+S LA+ AG +A ++ P +++K +LQ+ S+ G+ K+I
Sbjct: 1 SPLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQS------SAAGGSRKYKGILDCFKKI 54
Query: 167 IRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLL 204
+++G+RGL+KG P + R P ++FG YE + LL
Sbjct: 55 YKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92
Score = 58.4 bits (142), Expect = 6e-11
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 232 GLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLL 278
G+ K+I +++G+RGL+KG P + R P ++FG YE + LL
Sbjct: 46 GILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAAAIYFGTYETLKKLL 92
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 55.7 bits (134), Expect = 7e-09
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 13/84 (15%)
Query: 291 LATMAAGGVGGIALWTVIFPVDVIKSRVQASSQQNTANFVTQMTDIVKKEGVLALYNGLQ 350
+ G + G+ + V++P+D IK+ +QA + + +F +DI K LY+G+
Sbjct: 4 FHNLVTGALSGVIVDAVLYPIDSIKTNIQA---KKSFSF----SDIKK------LYSGIL 50
Query: 351 PTLIRTIPASAVLFLVYEYSKKIM 374
PTL+ T+PASA + YE SKK++
Sbjct: 51 PTLVGTVPASAFFYCFYELSKKLL 74
Score = 42.2 bits (99), Expect = 2e-04
Identities = 33/173 (19%), Positives = 75/173 (43%), Gaps = 28/173 (16%)
Query: 16 DFTAGSLGGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVRGLYAGTIPA 75
+ G+L GV + V P+D++K +Q S D ++ LY+G +P
Sbjct: 6 NLVTGALSGVIVDAVLYPIDSIKTNIQAKKSF--SFSD-----------IKKLYSGILPT 52
Query: 76 ILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTELL 135
++ V ++ + Y +K+++ + ++ +++ + +A + P E++
Sbjct: 53 LVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTS----IAEITACIVRLPFEIV 108
Query: 136 KIQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAREMP 188
K +Q + GN S + ++ +T+ R+ L K + + RE+P
Sbjct: 109 KQNMQVS-------GNISVLK-TIYEITQ---REGLPSFLGKSYFVMIVREIP 150
Score = 38.0 bits (88), Expect = 0.004
Identities = 30/152 (19%), Positives = 65/152 (42%), Gaps = 10/152 (6%)
Query: 222 FDFDSRKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPA 281
+ DS K N+ K+ ++ L+ G PT+ +P F+ YE ++ LL
Sbjct: 22 YPIDSIKTNIQ----AKKSFSFSDIKKLYSGILPTLVGTVPASAFFYCFYELSKKLL--T 75
Query: 282 DKPKEECGALATMAAGGVGGIALWTVIFPVDVIKSRVQASSQQNTANFVTQMTDIVKKEG 341
+ + + + + I V P +++K +Q S + + ++T ++EG
Sbjct: 76 EYRENISKTNLYLISTSIAEITACIVRLPFEIVKQNMQVSGNISVLKTIYEIT---QREG 132
Query: 342 VLA-LYNGLQPTLIRTIPASAVLFLVYEYSKK 372
+ + L ++R IP + + ++E K+
Sbjct: 133 LPSFLGKSYFVMIVREIPFDCIQYFLWETLKE 164
Score = 29.5 bits (66), Expect = 2.6
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 32/200 (16%)
Query: 172 LRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEECG-----------TSDCD 220
++ L+ G PT+ +P F+ YE ++ LL + + T+
Sbjct: 42 IKKLYSGILPTLVGTVPASAFFYCFYELSKKLLTEYRENISKTNLYLISTSIAEITACIV 101
Query: 221 EFDFDSRKINLGLFGLTK------QIIRQDGLRG-LFKGFGPTVAREMP----GYFVFFG 269
F+ K N+ + G +I +++GL L K + + RE+P YF++
Sbjct: 102 RLPFEIVKQNMQVSGNISVLKTIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWET 161
Query: 270 GYE-ATRTLLAPADKPKEECGALATMAAGGVGGIALWTVIFPVDVIKSRVQASSQQNTAN 328
E A + + K A+ AGG+ G + PVDVIKSR + +
Sbjct: 162 LKEKAKKDFGKFSKKYPSITSAICGGLAGGIAGF----LTTPVDVIKSRQIIYGK----S 213
Query: 329 FVTQMTDIVKKEGVLALYNG 348
++ +T+I +EG L Y G
Sbjct: 214 YIETVTEI-AEEGYLTFYKG 232
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 45.9 bits (109), Expect = 2e-05
Identities = 64/294 (21%), Positives = 113/294 (38%), Gaps = 54/294 (18%)
Query: 14 VIDFTAGSLGGVALVYVGQPLDTVKVKMQTY---PQL-------YSSMIDCCKKVWRDEG 63
DF G + P++ VK+ +QT P++ YS +++C ++V +++G
Sbjct: 8 ATDFLMGGISAAISKTAVAPIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRRVSKEQG 67
Query: 64 LVRGLYAGTIPAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSIL-ANASAGCLAS 122
V L+ G ++ + FA + + + + + N +G LA
Sbjct: 68 -VLSLWRGNTANVIRYFPTQAFNFAFKDYFKNM--FPKYNQKTDFWKFFGVNILSGGLAG 124
Query: 123 FFSSFTLCPTELLKIQLQAAHEEATKLG-NTSKINLGLFGLTKQIIRQDGLRGLFKGFGP 181
S + P + + +L A+ +G + GLF +I +Q G L++GFG
Sbjct: 125 ASSLLIVYPLDFARTRL------ASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGV 178
Query: 182 TVAREMPGYFV----FFGGYEATRTLLAPADKPK---------EECGTSD---CDEFDFD 225
+V G V +FG Y++ + LL DK + FD
Sbjct: 179 SVQ----GIIVYRGAYFGLYDSAKALLFGNDKNTNILYKWAVAQTVTILAGLISYPFDTV 234
Query: 226 SRKINL-------------GLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFV 266
R++ + G K+I++ +GL G FKG V R G V
Sbjct: 235 RRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFKGAWANVLRGAGGALV 288
Score = 42.1 bits (99), Expect = 3e-04
Identities = 39/158 (24%), Positives = 64/158 (40%), Gaps = 27/158 (17%)
Query: 232 GLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFV----FFGGYEATRTLLAPADKP--- 284
GLF +I +Q G L++GFG +V G V +FG Y++ + LL DK
Sbjct: 155 GLFDCLMKISKQTGFLSLYQGFGVSVQ----GIIVYRGAYFGLYDSAKALLFGNDKNTNI 210
Query: 285 --KEECGALATMAAGGVGGIALWTVIFPVDVIKSRV------QASSQQNTANFVTQMTDI 336
K T+ AG + +P D ++ R+ +A S+ + I
Sbjct: 211 LYKWAVAQTVTILAG--------LISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKI 262
Query: 337 VKKEGVLALYNGLQPTLIRTIPASAVLFLVYEYSKKIM 374
+K EG+ + G ++R + VL E K +
Sbjct: 263 LKNEGLGGFFKGAWANVLRGAGGALVLVFYDELQKLLK 300
Score = 36.7 bits (85), Expect = 0.015
Identities = 38/189 (20%), Positives = 82/189 (43%), Gaps = 10/189 (5%)
Query: 195 GGYEAT--RTLLAPADKPKEECGTSDCDEFDFDSRKIN--LGLFGLTKQIIRQDGLRGLF 250
GG A +T +AP ++ K T D + S K+ G+ +++ ++ G+ L+
Sbjct: 14 GGISAAISKTAVAPIERVKMLIQTQDSIP-EIKSGKVPRYSGIVNCFRRVSKEQGVLSLW 72
Query: 251 KGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEECGALAT-MAAGGVGGIALWTVIF 309
+G V R P F + + + ++ + + +GG+ G + +++
Sbjct: 73 RGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWKFFGVNILSGGLAGASSLLIVY 132
Query: 310 PVDVIKSRVQASSQQNTANFVTQMTD----IVKKEGVLALYNGLQPTLIRTIPASAVLFL 365
P+D ++R+ + + T + D I K+ G L+LY G ++ I F
Sbjct: 133 PLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFG 192
Query: 366 VYEYSKKIM 374
+Y+ +K ++
Sbjct: 193 LYDSAKALL 201
>gnl|CDD|107279 cd06284, PBP1_LacI_like_6, Ligand-binding domain of an
uncharacterized transcription regulator from
Actinobacillus succinogenes and its close homologs from
other bacteria. This group includes the ligand-binding
domain of an uncharacterized transcription regulator
from Actinobacillus succinogenes and its close homologs
from other bacteria. This group belongs to the the
LacI-GalR family repressors and are composed of two
functional domains: an N-terminal HTH (helix-turn-helix)
domain, which is responsible for the DNA-binding
specificity, and a C-terminal ligand-binding domain,
which is homologous to the sugar-binding domain of
ABC-type transport systems that contain the type I
periplasmic binding protein-like fold. As also observed
in the periplasmic binding proteins, the C-terminal
domain of the bacterial transcription repressor
undergoes a conformational change upon ligand binding
which in turn changes the DNA binding.
Length = 267
Score = 30.2 bits (69), Expect = 1.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 168 RQDGLRGLFKGFGPTVARE--MPGYFVFFGGYEATRTLLAPADKP 210
R +G R G E G F GY A R LLA D+P
Sbjct: 133 RLEGYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRP 177
Score = 30.2 bits (69), Expect = 1.6
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Query: 242 RQDGLRGLFKGFGPTVARE--MPGYFVFFGGYEATRTLLAPADKP 284
R +G R G E G F GY A R LLA D+P
Sbjct: 133 RLEGYRQALAEAGLPADEELIQEGDFSLESGYAAARRLLALPDRP 177
>gnl|CDD|130017 TIGR00942, 2a6301s05, Monovalent Cation (K+ or Na+):Proton
Antiporter-3 (CPA3) subfamily. [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 144
Score = 28.3 bits (63), Expect = 4.4
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 11/68 (16%)
Query: 302 IALWTVIFPVDVIKS------RVQASSQQNTANFVTQMTDIVKKEGVLALYNGLQPTLIR 355
I + + F DVIK+ + + F+T TD+ + + L N +I
Sbjct: 43 IIGFILRFLGDVIKANIDVTLIILRPRRPVNPGFMTVSTDLKDENALALLAN-----VIT 97
Query: 356 TIPASAVL 363
P +A L
Sbjct: 98 LTPGTAWL 105
>gnl|CDD|178087 PLN02468, PLN02468, putative pectinesterase/pectinesterase
inhibitor.
Length = 565
Score = 27.9 bits (62), Expect = 9.3
Identities = 18/66 (27%), Positives = 30/66 (45%)
Query: 98 SLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINL 157
S+ST K V D+++ ++ LA + L P EL K ++ A E +K +
Sbjct: 62 SISTSVKAVCDVTLYKDSCYETLAPAPKASQLQPEELFKYAVKVAINELSKASQAFSNSE 121
Query: 158 GLFGLT 163
G G+
Sbjct: 122 GFLGVK 127
>gnl|CDD|107258 cd01545, PBP1_SalR, Ligand-binding domain of DNA transcription
repressor SalR, a member of the LacI-GalR family of
bacterial transcription regulators. Ligand-binding
domain of DNA transcription repressor SalR, a member of
the LacI-GalR family of bacterial transcription
regulators. The SalR binds to glucose based compound
Salicin which is chemically related to aspirin. The
ligand-binding of SalR is structurally homologous to the
periplasmic sugar-binding domain of ABC-transporters and
both domains contain the type I periplasmic binding
protein-like fold. The LacI-GalR family repressors are
composed of two functional domains: an N-terminal HTH
(helix-turn-helix) domain, which is responsible for the
DNA-binding specificity, and a C-terminal ligand-binding
domain, which is homologous to the type I periplasmic
binding proteins. As also observed in the periplasmic
binding proteins, the C-terminal domain of the bacterial
transcription repressor undergoes a conformational
change upon ligand binding which in turn changes the DNA
binding affinity of the repressor.
Length = 270
Score = 27.9 bits (63), Expect = 9.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 188 PGYFVFFGGYEATRTLLAPADKP 210
G F F G EA LLA D+P
Sbjct: 158 QGDFTFESGLEAAEALLALPDRP 180
Score = 27.9 bits (63), Expect = 9.4
Identities = 11/23 (47%), Positives = 12/23 (52%)
Query: 262 PGYFVFFGGYEATRTLLAPADKP 284
G F F G EA LLA D+P
Sbjct: 158 QGDFTFESGLEAAEALLALPDRP 180
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.138 0.412
Gapped
Lambda K H
0.267 0.0842 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 19,151,431
Number of extensions: 1848221
Number of successful extensions: 1509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 32
Length of query: 379
Length of database: 10,937,602
Length adjustment: 99
Effective length of query: 280
Effective length of database: 6,546,556
Effective search space: 1833035680
Effective search space used: 1833035680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (26.7 bits)