RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17653
(379 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 149 bits (378), Expect = 2e-42
Identities = 67/303 (22%), Positives = 109/303 (35%), Gaps = 42/303 (13%)
Query: 15 IDFTAGSLGGVALVYVGQPLDTVKVKMQT-----------YPQLYSSMIDCCKKVWRDEG 63
+ F + PLDT KV++Q Y ++ + R EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 64 LVRGLYAGTIPAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASF 123
R LY G + + ++ SV Y ++ TK E I + AG
Sbjct: 63 -PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFY-----TKGSEHAGIGSRLLAGSTTGA 116
Query: 124 FSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKGFGPTV 183
+ PT+++K++ QA + G + K I R++G+RGL+KG P V
Sbjct: 117 LAVAVAQPTDVVKVRFQAQA----RAGGGRRYQ-STVEAYKTIAREEGIRGLWKGTSPNV 171
Query: 184 AREMPGYFVFFGGYEATRTLLAPADKPKEE-------------CGTSDCDEFDF-DSRKI 229
AR Y+ + L A+ ++ C T D +R +
Sbjct: 172 ARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM 231
Query: 230 NL------GLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADK 283
N ++R++G R +KGF P+ R V F YE + L A +
Sbjct: 232 NSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291
Query: 284 PKE 286
+E
Sbjct: 292 SRE 294
Score = 141 bits (357), Expect = 2e-39
Identities = 63/294 (21%), Positives = 110/294 (37%), Gaps = 30/294 (10%)
Query: 109 MSILANASAGCLASFFSSFTLCPTELLKIQLQAAHE-EATKLGNTSKINLGLFGLTKQII 167
+ L +A C+A + P + K++LQ E + S G+ G ++
Sbjct: 3 VKFLGAGTAACIADLIT----FPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMV 58
Query: 168 RQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKP-----KEECG-TSDCDE 221
R +G R L+ G + R+M V G Y++ + + + G T+
Sbjct: 59 RTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALA 118
Query: 222 FD----FDSRKINL-------------GLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGY 264
D K+ K I R++G+RGL+KG P VAR
Sbjct: 119 VAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVN 178
Query: 265 FVFFGGYEATRTLLAPADKPKEECGALATMAAGGVGGIALWTVIFPVDVIKSRVQASSQQ 324
Y+ + L A+ + + G + PVDV+K+R S+
Sbjct: 179 CAELVTYDLIKDTLLKANLMTD--DLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALG 236
Query: 325 NTANFVTQMTDIVKKEGVLALYNGLQPTLIRTIPASAVLFLVYEYSKKIMNTLF 378
+ +++KEG A Y G P+ +R + V+F+ YE K+ + +
Sbjct: 237 QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAY 290
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 138 bits (351), Expect = 1e-38
Identities = 63/302 (20%), Positives = 115/302 (38%), Gaps = 41/302 (13%)
Query: 107 EDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQI 166
+ +S L + AG +A+ S + P E +K+ LQ H A+K + K G+ +I
Sbjct: 3 QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQH--ASKQISAEKQYKGIIDCVVRI 60
Query: 167 IRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEEC------------ 214
++ G ++G V R P + F + + + ++
Sbjct: 61 PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGG 120
Query: 215 ---GTSDCDEFDFDSRKINL--------------GLFGLTKQIIRQDGLRGLFKGFGPTV 257
TS C + D + L GL +I + DGLRGL++GF +V
Sbjct: 121 AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 180
Query: 258 AREMPGYFVFFGGYEATRTLLAPADKPKEECGALATMAAGGVGGIALWTVIFPVDVIKSR 317
+ +FG Y+ + +L + + V +P D ++ R
Sbjct: 181 QGIIIYRAAYFGVYDTAKGMLPDPKNV----HIIVSWMIAQTVTAVAGLVSYPFDTVRRR 236
Query: 318 VQASSQQNTANFV-TQMTD----IVKKEGVLALYNGLQPTLIRTIPASAVLFLVYEYSKK 372
+ S + A+ + T D I K EG A + G ++R + A + ++Y+ KK
Sbjct: 237 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDEIKK 295
Query: 373 IM 374
+
Sbjct: 296 FV 297
Score = 127 bits (322), Expect = 2e-34
Identities = 57/296 (19%), Positives = 107/296 (36%), Gaps = 37/296 (12%)
Query: 14 VIDFTAGSLGGVALVYVGQPLDTVKVKMQT--------YPQLYSSMIDCCKKVWRDEGLV 65
+ DF AG + P++ VK+ +Q + Y +IDC ++ +++G
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG-F 66
Query: 66 RGLYAGTIPAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASFFS 125
+ G + ++ ++ FA ++I N ++G A S
Sbjct: 67 LSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATS 126
Query: 126 SFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAR 185
+ P + + +L A + K + GL +I + DGLRGL++GF +V
Sbjct: 127 LCFVYPLDFARTRLAA---DVGKGAAQREFT-GLGNCITKIFKSDGLRGLYQGFNVSVQG 182
Query: 186 EMPGYFVFFGGYEATRTLLAPADKPKEE-----------CGTSDCDEFDFDSRKINL--- 231
+ +FG Y+ + +L FD R++ +
Sbjct: 183 IIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 242
Query: 232 ---------GLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLL 278
G ++I + +G + FKG V R M G FV Y+ + +
Sbjct: 243 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLV-LYDEIKKFV 297
Score = 95.0 bits (237), Expect = 2e-22
Identities = 35/206 (16%), Positives = 83/206 (40%), Gaps = 28/206 (13%)
Query: 10 WKSGVIDFTAGSLGG---VALVYVGQPLDTVKVKMQ------TYPQLYSSMIDCCKKVWR 60
W+ + +G G + VY PLD + ++ + ++ + +C K+++
Sbjct: 109 WRYFAGNLASGGAAGATSLCFVY---PLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165
Query: 61 DEGLVRGLYAGTIPAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCL 120
+G +RGLY G ++ + + F Y + ++ + +++ I+ +
Sbjct: 166 SDG-LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML------PDPKNVHIIVSWMIAQT 218
Query: 121 ASFFSSFTLCPTELLK--IQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKG 178
+ + P + ++ + +Q+ + A + G ++I + +G + FKG
Sbjct: 219 VTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYT------GTVDCWRKIAKDEGPKAFFKG 272
Query: 179 FGPTVAREMPGYFVFFGGYEATRTLL 204
V R M G FV Y+ + +
Sbjct: 273 AWSNVLRGMGGAFVLV-LYDEIKKFV 297
Score = 60.0 bits (146), Expect = 3e-10
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 291 LATMAAGGVGGIALWTVIFPVDVIKSRVQA-------SSQQNTANFVTQMTDIVKKEGVL 343
L AGGV T + P++ +K +Q S+++ + + I K++G L
Sbjct: 8 LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 67
Query: 344 ALYNGLQPTLIRTIPASAVLFLVYEYSKKIMNTLF 378
+ + G +IR P A+ F + K+I
Sbjct: 68 SFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGV 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 2e-08
Identities = 39/277 (14%), Positives = 69/277 (24%), Gaps = 63/277 (22%)
Query: 41 MQTYPQLYSSMIDCCKKVWRDEGLVRGLYAGTIPAILANVAENSVLFACYGF---CQKII 97
S+ +++ + + L +L NV A F C KI+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLL------VLLNVQNAKAWNA---FNLSC-KIL 269
Query: 98 SLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGN-TSKIN 156
L+T K V D A + L + T P E+ + L+ L N
Sbjct: 270 -LTTRFKQVTDFLSAATTTHISLDHHSMTLT--PDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 157 ---LGLFG--------------------LTKQI------IRQDGLRGLFKGFG------- 180
L + LT I + R +F
Sbjct: 327 PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 181 -PTVA-----REMPGYFVFFGGYEATRTLLAPADKPKEECGTSDCDEFDFDSRKINLGLF 234
PT+ ++ V + + L + + + +
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI---YLELKVKLENEY 443
Query: 235 GLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGY 271
L + I+ + F YF G+
Sbjct: 444 ALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGH 479
Score = 49.1 bits (116), Expect = 2e-06
Identities = 58/435 (13%), Positives = 112/435 (25%), Gaps = 149/435 (34%)
Query: 28 VYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLVRGLYAGTIPAILANVAENSV-L 86
+V + L Y L S + K R ++ +Y + N +
Sbjct: 81 KFVEEVLR------INYKFLMSPI----KTEQRQPSMMTRMYIEQR-----DRLYNDNQV 125
Query: 87 FACYGFC--QKIISLSTGTKNVEDMS-ILANASAGC----LAS----------------F 123
FA Y Q + L + +L + G +A F
Sbjct: 126 FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
Query: 124 FSSFTLC--PTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKGFGP 181
+ + C P +L++ + ++ + S + + I Q LR L K
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLK---- 239
Query: 182 TVAREMPGYFVFFGGYEATRTLLAPADKPKEECGTSDCDEFDFDSR--------KINLGL 233
++ LL + + F+ + ++ L
Sbjct: 240 --SKPYE------------NCLLVLLNV----QNAKAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 234 FGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLA------PADKPKEE 287
T I D P + ++LL P D P+E
Sbjct: 282 SAATTTHISLDHHS---MTLTP----------------DEVKSLLLKYLDCRPQDLPREV 322
Query: 288 CG----ALATMAAGGVGGIALWT---------------------------------VIFP 310
L+ +A G+A W +FP
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP 382
Query: 311 VDV-IKSRV-----QASSQQNTANFVTQMTD---IVK--KEGVLALYNGLQPTLIRTIPA 359
I + + + + V ++ + K KE +++ + L +
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-SIYLELKVKLEN 441
Query: 360 SAVL--FLVYEYSKK 372
L +V Y+
Sbjct: 442 EYALHRSIVDHYNIP 456
Score = 37.1 bits (85), Expect = 0.011
Identities = 47/281 (16%), Positives = 76/281 (27%), Gaps = 79/281 (28%)
Query: 7 VATWKSGVIDFTAGSLGG-VALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLV 65
+ T V DF + + ++L + L +VK L +DC R + L
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-----SLLLKYLDC-----RPQDLP 319
Query: 66 RGLYAGTIPAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASF-- 123
R T P L+ +AE + ++ K+V L L
Sbjct: 320 R-EVLTTNPRRLSIIAE---------SIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEP 368
Query: 124 ---------FSSF---TLCPTELLKIQLQAAHEE-----ATKLGNTSKIN-------LGL 159
S F PT LL + + KL S + + +
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
Query: 160 FGLT--------------KQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLA 205
+ + I+ + F YF G+ L
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYSHIGHH-----LK 482
Query: 206 PADKPKEECGTSDCDEFDFDSRKINLGLFGLTKQIIRQDGL 246
+ P+ F R + L F +Q IR D
Sbjct: 483 NIEHPERM------TLF----RMVFLD-FRFLEQKIRHDST 512
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.066
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 7/27 (25%)
Query: 337 VKK-EGVLALYNGLQPTLIRTIPASAV 362
+KK + L LY + PA A+
Sbjct: 22 LKKLQASLKLY---ADD---SAPALAI 42
Score = 29.9 bits (66), Expect = 0.66
Identities = 8/25 (32%), Positives = 10/25 (40%), Gaps = 5/25 (20%)
Query: 272 EATRTLLAPADKPKEECGALATMAA 296
+A+ L A P ALA A
Sbjct: 26 QASLKLYADDSAP-----ALAIKAT 45
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein,
ribosome biogenesis, RNA-binding, rRNA processing; NMR
{Saccharomyces cerevisiae} PDB: 2osq_A
Length = 108
Score = 27.6 bits (62), Expect = 2.8
Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 14/69 (20%)
Query: 167 IRQDGLRGLFKGFGPTV-AREMPGY-FVFFGGYEATRTLLAPADKPKEECGTSDCDEFDF 224
+++ L +F FGP + + G+ FV F E+ A K EE F
Sbjct: 43 VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAES-------AAKAIEE-----VHGKSF 90
Query: 225 DSRKINLGL 233
++ + +
Sbjct: 91 ANQPLEVVY 99
Score = 26.9 bits (60), Expect = 5.3
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Query: 241 IRQDGLRGLFKGFGPTV-AREMPGY-FVFFGGYEA 273
+++ L +F FGP + + G+ FV F E+
Sbjct: 43 VQESELNEIFGPFGPMKEVKILNGFAFVEFEEAES 77
>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding
protei; 1.39A {Hypocrea virens}
Length = 120
Score = 27.4 bits (60), Expect = 3.5
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%)
Query: 170 DGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEECGTSDCDEFDFDSRKI 229
DG GL + + ++P F + GG A A CGT C + + I
Sbjct: 23 DGPNGLETRYHWSTQGQIPR-FPYIGGAAAV------AGWNSASCGT--CWKLQYSGHTI 73
Query: 230 NL 231
+
Sbjct: 74 YV 75
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein;
NMR {Homo sapiens}
Length = 101
Score = 26.9 bits (60), Expect = 4.1
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 167 IRQDGLRGLFKGFGP----TVAREMPGY-FVFF 194
+ L F +GP +AR PG+ FV F
Sbjct: 12 AGKGELERAFSYYGPLRTVWIARNPPGFAFVEF 44
Score = 26.9 bits (60), Expect = 4.1
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 241 IRQDGLRGLFKGFGP----TVAREMPGY-FVFF 268
+ L F +GP +AR PG+ FV F
Sbjct: 12 AGKGELERAFSYYGPLRTVWIARNPPGFAFVEF 44
>2iks_A DNA-binding transcriptional dual regulator; escherichia coli
structural genomics, PSI-2, protein structure
initiative; 1.85A {Escherichia coli}
Length = 293
Score = 27.9 bits (63), Expect = 5.9
Identities = 10/94 (10%), Positives = 19/94 (20%), Gaps = 20/94 (21%)
Query: 193 FFGGYEATRTLLAPADKPKEECGTSDCDEFDFDSRKINL--GLFGLTKQIIRQDGLRGLF 250
L + + + L L+ +R+ G R +
Sbjct: 123 QDDAEMLAEELR--------KFP----------AETVLYLGALPELSVSFLREQGFRTAW 164
Query: 251 KGFGPTVAREMPGYFVFFGGYEATRTLLAPADKP 284
K V + + L P
Sbjct: 165 KDDPREVHFLYANSYEREAAAQLFEKWLETHPMP 198
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and
splicing factor,...; protein-RNA complex RRM alpha-beta
sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR
{Streptococcus SP} PDB: 2i38_A
Length = 150
Score = 27.2 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 167 IRQDGLRGLFKGFGP----TVAREMPGY-FVFF 194
+ L F +GP VAR PG+ FV F
Sbjct: 85 GNKTELERAFGYYGPLRSVWVARNPPGFAFVEF 117
Score = 27.2 bits (60), Expect = 6.0
Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 5/33 (15%)
Query: 241 IRQDGLRGLFKGFGP----TVAREMPGY-FVFF 268
+ L F +GP VAR PG+ FV F
Sbjct: 85 GNKTELERAFGYYGPLRSVWVARNPPGFAFVEF 117
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein
structure initiative II(PSI II), NYSGXRC, 11232D),
structural genomics; 2.53A {Corynebacterium glutamicum}
Length = 366
Score = 27.6 bits (62), Expect = 6.8
Identities = 13/102 (12%), Positives = 21/102 (20%), Gaps = 20/102 (19%)
Query: 195 GGYEATRTLLAPADKPKEE---------CGTSDCDEFDFDSRKINLGLFGLTKQIIRQDG 245
A + L+ + D D + + L Q R G
Sbjct: 176 AIAPAAQALI--------DAGHRKIGILSIRLDRANNDGEVTRERLENAQYQVQRDRVRG 227
Query: 246 LRGLFKGFGPTVAREM---PGYFVFFGGYEATRTLLAPADKP 284
+F G +E + LL
Sbjct: 228 AMEVFIEAGIDPGTVPIMECWINNRQHNFEVAKELLETHPDL 269
>1jye_A Lactose operon repressor; gene regulation, protein stability,
protein DNA-binding, transcription; 1.70A {Escherichia
coli} SCOP: c.93.1.1 PDB: 1lbi_A 1lbg_A* 1lbh_A 1jyf_A
3edc_A 1efa_A* 1jwl_A* 2pe5_A* 1tlf_A* 2p9h_A* 2paf_A*
1cjg_A* 1l1m_A 1osl_A 2kei_A* 2kej_A* 2kek_A* 2bjc_A
1lqc_A 1lcc_A* ...
Length = 349
Score = 27.1 bits (61), Expect = 9.6
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 180 GPTVAREMPGYFVFFGGYEATRTLLAPADKP 210
E G + G++ T +L P
Sbjct: 209 QIQPIAEREGDWSAMSGFQQTMQMLNEGIVP 239
Score = 27.1 bits (61), Expect = 9.6
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 254 GPTVAREMPGYFVFFGGYEATRTLLAPADKP 284
E G + G++ T +L P
Sbjct: 209 QIQPIAEREGDWSAMSGFQQTMQMLNEGIVP 239
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.138 0.412
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,660,779
Number of extensions: 338817
Number of successful extensions: 758
Number of sequences better than 10.0: 1
Number of HSP's gapped: 723
Number of HSP's successfully gapped: 37
Length of query: 379
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 284
Effective length of database: 4,049,298
Effective search space: 1150000632
Effective search space used: 1150000632
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.1 bits)