RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17653
         (379 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 97.9 bits (242), Expect = 7e-24
 Identities = 56/292 (19%), Positives = 107/292 (36%), Gaps = 37/292 (12%)

Query: 12  SGVIDFTAGSLGGVALVYVGQPLDTVKVKMQT--------YPQLYSSMIDCCKKVWRDEG 63
           S + DF AG +          P++ VK+ +Q           + Y  +IDC  ++ +++G
Sbjct: 5   SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQG 64

Query: 64  LVRGLYAGTIPAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASAGCLASF 123
                + G +  ++      ++ FA     ++I                 N ++G  A  
Sbjct: 65  -FLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGA 123

Query: 124 FSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFKGFGPTV 183
            S   + P +  + +L A        G   +   GL     +I + DGLRGL++GF  +V
Sbjct: 124 TSLCFVYPLDFARTRLAAD----VGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 179

Query: 184 AREMPGYFVFFGGYEATRT---------LLAPADKPKEECGTSDCDEFDFDSRKINL--- 231
              +     +FG Y+  +          ++      +     +    + FD+ +  +   
Sbjct: 180 QGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQ 239

Query: 232 -----------GLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFFGGYE 272
                      G     ++I + +G +  FKG    V R M G FV    Y+
Sbjct: 240 SGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGGAFVLV-LYD 290



 Score = 91.3 bits (225), Expect = 2e-21
 Identities = 58/297 (19%), Positives = 108/297 (36%), Gaps = 41/297 (13%)

Query: 107 EDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQI 166
           + +S L +  AG +A+  S   + P E +K+ LQ  H   +K  +  K   G+     +I
Sbjct: 2   QALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHA--SKQISAEKQYKGIIDCVVRI 59

Query: 167 IRQDGLRGLFKGFGPTVAREMPGYFVFFGGYEATRTLLAPADKPKEEC------------ 214
            ++ G    ++G    V R  P   + F   +  + +        ++             
Sbjct: 60  PKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGG 119

Query: 215 ---GTSDCDEFDFDSRKINL--------------GLFGLTKQIIRQDGLRGLFKGFGPTV 257
               TS C  +  D  +  L              GL     +I + DGLRGL++GF  +V
Sbjct: 120 AAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSV 179

Query: 258 AREMPGYFVFFGGYEATRTLLAPADKPKEECGALATMAAGGVGGIALWTVIFPVDVIKSR 317
              +     +FG Y+  + +        +    + +             V +P D ++ R
Sbjct: 180 QGIIIYRAAYFGVYDTAKGM----LPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRR 235

Query: 318 VQASSQQNTA-----NFVTQMTDIVKKEGVLALYNGLQPTLIRTIPASAVLFLVYEY 369
           +   S +  A       V     I K EG  A + G    ++R +   A + ++Y+ 
Sbjct: 236 MMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAFVLVLYDE 291



 Score = 62.4 bits (150), Expect = 1e-11
 Identities = 35/201 (17%), Positives = 74/201 (36%), Gaps = 18/201 (8%)

Query: 4   HKEVATWKSGVIDFTAGSLGGVALVYVGQPLDTVKVKMQTYPQL------YSSMIDCCKK 57
            +    W+    +  +G   G   +    PLD  + ++            ++ + +C  K
Sbjct: 102 DRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITK 161

Query: 58  VWRDEGLVRGLYAGTIPAILANVAENSVLFACYGFCQKIISLSTGTKNVEDMSILANASA 117
           +++ +GL RGLY G   ++   +   +  F  Y   + ++        +    I    +A
Sbjct: 162 IFKSDGL-RGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTA 220

Query: 118 GCLASFFSSFTLCPTELLKIQLQAAHEEATKLGNTSKINLGLFGLTKQIIRQDGLRGLFK 177
                 +   T+      ++ +Q+  + A  +        G     ++I + +G +  FK
Sbjct: 221 VAGLVSYPFDTVRR----RMMMQSGRKGADIMYT------GTVDCWRKIAKDEGPKAFFK 270

Query: 178 GFGPTVAREMPGYFVFFGGYE 198
           G    V R M G FV    Y+
Sbjct: 271 GAWSNVLRGMGGAFVLV-LYD 290


>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
           C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 98

 Score = 25.2 bits (55), Expect = 5.9
 Identities = 9/54 (16%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 215 GTSDCDEFDFDSRKINLGLFGLTKQIIRQDGLRGLFKGFGPTVAREMPGYFVFF 268
           G+S   +    + ++ +G   L   ++++  +  +F  +G  V   +   F F 
Sbjct: 4   GSSGKTDPRSMNSRVFIG--NLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFV 55


>d1miob_ c.92.2.3 (B:) Nitrogenase iron-molybdenum protein, beta
           chain {Clostridium pasteurianum [TaxId: 1501]}
          Length = 457

 Score = 26.6 bits (58), Expect = 6.0
 Identities = 24/203 (11%), Positives = 44/203 (21%), Gaps = 33/203 (16%)

Query: 92  FCQKIISLSTGTKNVEDMSILANASAGCLASFFSSFTLCPTELLKIQLQAAHEEATKLGN 151
            CQ + ++      + +    ++ S GC +   +  +    E       +  E A+  G 
Sbjct: 21  TCQPVGAMYAALG-IHNCLPHSHGSQGCCSYHRTVLSRHFKEPAMASTSSFTEGASVFGG 79

Query: 152 TSKINLGLFGLTKQ--------------IIRQDGLRGLFKGF---------GPTVAREMP 188
            S I   +  +                     D L                   +    P
Sbjct: 80  GSNIKTAVKNIFSLYNPDIIAVHTTCLSETLGDDLPTYISQMEDAGSIPEGKLVIHTNTP 139

Query: 189 GYFV--FFGGYEATRTL---LAPADKPKEECGTSDCDEF---DFDSRKINLGLFGLTKQI 240
            Y      G     + +   L+     K              D    K       +   I
Sbjct: 140 SYVGSHVTGFANMVQGIVNYLSENTGAKNGKINVIPGFVGPADMREIKRLFEAMDI-PYI 198

Query: 241 IRQDGLRGLFKGFGPTVAREMPG 263
           +  D    L             G
Sbjct: 199 MFPDTSGVLDGPTTGEYKMYPEG 221


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.412 

Gapped
Lambda     K      H
   0.267   0.0613    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,337,426
Number of extensions: 60512
Number of successful extensions: 105
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 5
Length of query: 379
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 292
Effective length of database: 1,213,086
Effective search space: 354221112
Effective search space used: 354221112
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)