BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17655
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 31.2 bits (69), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 6/58 (10%)

Query: 10  GVALVYVGQPLDTVKVKMQTYPQL-----YSSMIDCCKKVWRDEGLVREISKKEACNV 62
           G   V V QP D VKV+ Q   +      Y S ++  K + R+EG +R + K  + NV
Sbjct: 115 GALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEG-IRGLWKGTSPNV 171


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 29.3 bits (64), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 6/40 (15%)

Query: 16  VGQPLDTVKVKMQTYPQ------LYSSMIDCCKKVWRDEG 49
           V  P DTV+ +M           +Y+  +DC +K+ +DEG
Sbjct: 226 VSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEG 265


>pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus
           Thuringiensis
          Length = 242

 Score = 28.1 bits (61), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 5   LIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDC-CKKVWRDEGLVREISKKEACNVF 63
           ++++ G A + +  P  T K +  +YP+LY   + C     W  E LV+E   K    + 
Sbjct: 142 VLKSDGYACIAILGP--TAKPRENSYPRLYGKDVVCNTXXPWEFEQLVKEQGFKVVDGIG 199

Query: 64  VYK 66
           VYK
Sbjct: 200 VYK 202


>pdb|3LDU|A Chain A, The Crystal Structure Of A Possible Methylase From
           Clostridium Difficile 630
          Length = 385

 Score = 25.4 bits (54), Expect = 8.9,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 30/49 (61%), Gaps = 4/49 (8%)

Query: 22  TVKVKMQTYPQLYS----SMIDCCKKVWRDEGLVREISKKEACNVFVYK 66
           ++K K+ + P + +    ++++  KK + ++GL++E  +K    VF++K
Sbjct: 103 SIKSKLYSTPDVQAIVKKAIVESLKKSYLEDGLLKEDKEKYPIFVFIHK 151


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.136    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,831,026
Number of Sequences: 62578
Number of extensions: 55212
Number of successful extensions: 140
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 140
Number of HSP's gapped (non-prelim): 5
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)