Query psy17655
Match_columns 68
No_of_seqs 164 out of 1039
Neff 9.3
Searched_HMMs 29240
Date Fri Aug 16 19:36:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17655.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17655hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 99.7 7.1E-19 2.4E-23 105.1 3.9 63 4-67 205-270 (303)
2 1okc_A ADP, ATP carrier protei 99.7 7.2E-18 2.5E-22 100.4 6.3 57 8-65 218-280 (297)
3 2lck_A Mitochondrial uncouplin 99.7 2.6E-18 9E-23 102.6 3.2 66 1-67 1-79 (303)
4 1okc_A ADP, ATP carrier protei 99.7 7.8E-18 2.7E-22 100.2 5.1 64 3-67 9-82 (297)
5 2a3d_A Protein (de novo three- 62.4 9.6 0.00033 17.5 2.7 15 18-32 9-23 (73)
6 2acm_A Mucin-1; auto-catalytic 60.4 1.4 4.8E-05 20.5 -0.4 20 35-55 40-59 (66)
7 2jvw_A Uncharacterized protein 30.3 38 0.0013 16.8 2.0 32 36-68 16-47 (88)
8 2czy_A Paired amphipathic heli 30.1 7 0.00024 18.7 -0.7 23 20-42 11-33 (77)
9 1g1e_B SIN3A; four-helix bundl 29.4 11 0.00039 18.5 0.0 24 20-43 17-40 (89)
10 2cr7_A Paired amphipathic heli 29.3 6.4 0.00022 19.0 -0.9 22 20-41 17-38 (80)
11 3vjj_A P9-1; 3.00A {Rice black 29.0 28 0.00095 21.3 1.6 34 13-50 275-308 (368)
12 1e91_A Paired amphipathic heli 26.4 10 0.00034 18.5 -0.5 23 20-42 14-36 (85)
13 1yro_A Alpha-lactalbumin; Arg2 25.9 55 0.0019 17.1 2.3 20 37-58 88-107 (123)
14 2f05_A Paired amphipathic heli 25.1 15 0.00052 18.7 0.0 24 20-43 14-37 (105)
15 2fbd_A Lysozyme 1; digestive l 24.5 61 0.0021 16.9 2.3 20 37-58 89-108 (122)
16 1hml_A Alpha-lactalbumin; calc 24.2 61 0.0021 17.4 2.3 20 37-58 107-126 (142)
17 1iiz_A Lysozyme; hydrolase; 2. 22.4 62 0.0021 16.9 2.0 20 37-58 87-106 (120)
18 3f2e_A SIRV coat protein; four 21.9 22 0.00076 17.4 0.2 29 34-62 8-39 (100)
19 1b9o_A Protein (alpha-lactalbu 21.6 58 0.002 17.0 1.8 20 37-58 88-107 (123)
20 2z5i_I TM, tropomyosin alpha-1 20.6 37 0.0013 14.3 0.8 12 19-30 4-15 (40)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.75 E-value=7.1e-19 Score=105.10 Aligned_cols=63 Identities=22% Similarity=0.304 Sum_probs=57.6
Q ss_pred HHHH--HHHHHHHhhhChHHHHHHHHhhCCC-CCCcHHHHHHHHHHHhCcccccccCcccccccccc
Q psy17655 4 DLIR--NRGVALVYVGQPLDTVKVKMQTYPQ-LYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKS 67 (68)
Q Consensus 4 ~~~a--~ag~~~~~~~~P~d~vk~r~q~~~~-~~~~~~~~~~~i~~~~G~~~gly~G~~~~~~~~~~ 67 (68)
++++ ++|++++++++|+|++|+|+|.+.. .|.++++++++++++||+ +|||||+.|+++|..|
T Consensus 205 ~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~-~glyrG~~~~~~r~~p 270 (303)
T 2lck_A 205 HFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGP-RAFYKGFMPSFLRLGS 270 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCT-HHHHSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHhccccccCCHHHHHHHHHHHcCh-HHhhccHHHHHHHHHh
Confidence 4556 8999999999999999999999864 588999999999999999 9999999999999876
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.73 E-value=7.2e-18 Score=100.36 Aligned_cols=57 Identities=28% Similarity=0.427 Sum_probs=52.8
Q ss_pred HHHHHHHhhhChHHHHHHHHhhCCC------CCCcHHHHHHHHHHHhCcccccccCcccccccc
Q psy17655 8 NRGVALVYVGQPLDTVKVKMQTYPQ------LYSSMIDCCKKVWRDEGLVREISKKEACNVFVY 65 (68)
Q Consensus 8 ~ag~~~~~~~~P~d~vk~r~q~~~~------~~~~~~~~~~~i~~~~G~~~gly~G~~~~~~~~ 65 (68)
++|++++++++|+|++|+|+|++.. .|.+.++++++++++||+ +|||||+.|+++|.
T Consensus 218 ~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~-~glyrG~~~~~~r~ 280 (297)
T 1okc_A 218 TVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGP-KAFFKGAWSNVLRG 280 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCG-GGGGTTHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCc-CeEecchHHHHHhh
Confidence 8899999999999999999998752 578999999999999999 99999999999984
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.71 E-value=2.6e-18 Score=102.63 Aligned_cols=66 Identities=23% Similarity=0.291 Sum_probs=59.3
Q ss_pred ChhHHHH--HHHHHHHhhhChHHHHHHHHhhCCC-----------CCCcHHHHHHHHHHHhCcccccccCcccccccccc
Q psy17655 1 MKVDLIR--NRGVALVYVGQPLDTVKVKMQTYPQ-----------LYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKS 67 (68)
Q Consensus 1 ~~~~~~a--~ag~~~~~~~~P~d~vk~r~q~~~~-----------~~~~~~~~~~~i~~~~G~~~gly~G~~~~~~~~~~ 67 (68)
|..++++ ++|+++.++++|+|++|+|+|++.. .|+++++++++++++||+ ++||||+.+.+++..|
T Consensus 1 ~~~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~-~glyrG~~~~l~~~~~ 79 (303)
T 2lck_A 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP-RSLYNGLVAGLQRQMS 79 (303)
T ss_dssp CCCHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCH-HHHHSSHHHHHHHHHH
T ss_pred CchhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCH-HHHHcCCHHHHHHHHH
Confidence 4567778 9999999999999999999999753 578999999999999999 9999999999998765
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.71 E-value=7.8e-18 Score=100.21 Aligned_cols=64 Identities=20% Similarity=0.364 Sum_probs=57.4
Q ss_pred hHHHH--HHHHHHHhhhChHHHHHHHHhhCCC--------CCCcHHHHHHHHHHHhCcccccccCcccccccccc
Q psy17655 3 VDLIR--NRGVALVYVGQPLDTVKVKMQTYPQ--------LYSSMIDCCKKVWRDEGLVREISKKEACNVFVYKS 67 (68)
Q Consensus 3 ~~~~a--~ag~~~~~~~~P~d~vk~r~q~~~~--------~~~~~~~~~~~i~~~~G~~~gly~G~~~~~~~~~~ 67 (68)
.++++ ++|+++.++++|+|++|+|+|++.. .|+++++++++++++||+ ++||||+.+.+++..|
T Consensus 9 ~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~-~glyrG~~~~l~~~~~ 82 (297)
T 1okc_A 9 KDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF-LSFWRGNLANVIRYFP 82 (297)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCG-GGGGTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccch-hheecccHHHHHHHHH
Confidence 35666 8999999999999999999999742 578999999999999999 9999999999998765
No 5
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=62.39 E-value=9.6 Score=17.52 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=11.6
Q ss_pred ChHHHHHHHHhhCCC
Q psy17655 18 QPLDTVKVKMQTYPQ 32 (68)
Q Consensus 18 ~P~d~vk~r~q~~~~ 32 (68)
+-+..+|+|+|.-..
T Consensus 9 qrlaaiktrlqalgg 23 (73)
T 2a3d_A 9 QRLAAIKTRLQALGG 23 (73)
T ss_dssp HHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHhcC
Confidence 456779999998754
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=60.43 E-value=1.4 Score=20.52 Aligned_cols=20 Identities=10% Similarity=0.368 Sum_probs=16.5
Q ss_pred CcHHHHHHHHHHHhCcccccc
Q psy17655 35 SSMIDCCKKVWRDEGLVREIS 55 (68)
Q Consensus 35 ~~~~~~~~~i~~~~G~~~gly 55 (68)
+++.+.+..|++++++ .|++
T Consensus 40 r~is~L~lqIykq~~F-Lgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGF-LGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTE-EEEE
T ss_pred HHHHHHHHHHHccCCe-eeee
Confidence 4677888899999999 8875
No 7
>2jvw_A Uncharacterized protein; solution structure, alpha helical protein, structural GE unknown function, PSI-2, protein structure initiative; NMR {Vibrio fischeri}
Probab=30.28 E-value=38 Score=16.77 Aligned_cols=32 Identities=19% Similarity=0.176 Sum_probs=21.5
Q ss_pred cHHHHHHHHHHHhCcccccccCccccccccccC
Q psy17655 36 SMIDCCKKVWRDEGLVREISKKEACNVFVYKSS 68 (68)
Q Consensus 36 ~~~~~~~~i~~~~G~~~gly~G~~~~~~~~~~~ 68 (68)
..-..+..+....|| .++..-+-.++...-||
T Consensus 16 tLE~ilt~Lv~~YGW-~~L~~~i~I~CF~~~PS 47 (88)
T 2jvw_A 16 TLQKLLTELVEHYGW-EELSYMVNINCFKKDPS 47 (88)
T ss_dssp CHHHHHHHHHHHTCH-HHHHHHTTSSSTTSSCC
T ss_pred hHHHHHHHHHHHhCH-HHHHhhcccccCCCCCc
Confidence 345566677777787 77777766666666554
No 8
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=30.06 E-value=7 Score=18.71 Aligned_cols=23 Identities=30% Similarity=0.637 Sum_probs=13.7
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHH
Q psy17655 20 LDTVKVKMQTYPQLYSSMIDCCK 42 (68)
Q Consensus 20 ~d~vk~r~q~~~~~~~~~~~~~~ 42 (68)
++.||.|.|.++..|....+.++
T Consensus 11 l~~VK~~F~~~p~~Y~~FL~im~ 33 (77)
T 2czy_A 11 LDQVKIRFGSDPATYNGFLEIMK 33 (77)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHH
Confidence 57788888876444444444333
No 9
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=29.44 E-value=11 Score=18.51 Aligned_cols=24 Identities=17% Similarity=0.527 Sum_probs=17.0
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHH
Q psy17655 20 LDTVKVKMQTYPQLYSSMIDCCKK 43 (68)
Q Consensus 20 ~d~vk~r~q~~~~~~~~~~~~~~~ 43 (68)
+.-||.|.|.++..|....+.++.
T Consensus 17 vnkVK~rF~~~p~~Y~~FL~IL~~ 40 (89)
T 1g1e_B 17 VNKIKNRFQGQPDIYKAFLEILHT 40 (89)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHH
Confidence 567899998876666666666553
No 10
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=29.27 E-value=6.4 Score=19.01 Aligned_cols=22 Identities=27% Similarity=0.617 Sum_probs=12.8
Q ss_pred HHHHHHHHhhCCCCCCcHHHHH
Q psy17655 20 LDTVKVKMQTYPQLYSSMIDCC 41 (68)
Q Consensus 20 ~d~vk~r~q~~~~~~~~~~~~~ 41 (68)
++.||.|.|.++..|....+.+
T Consensus 17 l~~VK~rF~~~p~~Y~~FL~im 38 (80)
T 2cr7_A 17 LDQVKIRFGSDPATYNGFLEIM 38 (80)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHH
Confidence 5678888886544444443433
No 11
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=29.01 E-value=28 Score=21.30 Aligned_cols=34 Identities=18% Similarity=0.316 Sum_probs=23.6
Q ss_pred HHhhhChHHHHHHHHhhCCCCCCcHHHHHHHHHHHhCc
Q psy17655 13 LVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGL 50 (68)
Q Consensus 13 ~~~~~~P~d~vk~r~q~~~~~~~~~~~~~~~i~~~~G~ 50 (68)
++.--+|+|.+|-.++.. .+....+.+.++.+|+
T Consensus 275 aTFdnypfdllRfqL~Sl----istp~~I~e~i~K~GL 308 (368)
T 3vjj_A 275 ATFDNYPFDLLRFQLSSL----ISTPALIREKIAKEGL 308 (368)
T ss_dssp HHCTTCBHHHHHHHCSSC----CCCCHHHHHHHHHSCS
T ss_pred ecCCCCCHHHHHHHhhhh----ccChHHHHHHHHhcCc
Confidence 445569999988766643 3445677777888886
No 12
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=26.42 E-value=10 Score=18.53 Aligned_cols=23 Identities=17% Similarity=0.550 Sum_probs=16.0
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHH
Q psy17655 20 LDTVKVKMQTYPQLYSSMIDCCK 42 (68)
Q Consensus 20 ~d~vk~r~q~~~~~~~~~~~~~~ 42 (68)
++-||.|.|.++..|....+.++
T Consensus 14 v~kVK~rF~~~p~~Y~~FL~il~ 36 (85)
T 1e91_A 14 VNKIKTRFLDHPEIYRSFLEILH 36 (85)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcChHHHHHHHHHHH
Confidence 56788998887656666666554
No 13
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=25.93 E-value=55 Score=17.12 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHhCcccccccCc
Q psy17655 37 MIDCCKKVWRDEGLVREISKKE 58 (68)
Q Consensus 37 ~~~~~~~i~~~~G~~~gly~G~ 58 (68)
...|.++|++++|+ .. |.++
T Consensus 88 ~i~CAk~I~~~~G~-~a-W~~w 107 (123)
T 1yro_A 88 DIACAKKILAIKGI-DY-WKAY 107 (123)
T ss_dssp HHHHHHHHHHHTCG-GG-STTH
T ss_pred HHHHHHHHHHhcCc-ch-hHHH
Confidence 47899999999998 54 5444
No 14
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=25.08 E-value=15 Score=18.71 Aligned_cols=24 Identities=17% Similarity=0.528 Sum_probs=16.7
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHH
Q psy17655 20 LDTVKVKMQTYPQLYSSMIDCCKK 43 (68)
Q Consensus 20 ~d~vk~r~q~~~~~~~~~~~~~~~ 43 (68)
++.||+|.|.++..|....+.++.
T Consensus 14 vnkVK~rF~d~p~vY~~FL~IL~~ 37 (105)
T 2f05_A 14 VNKIKTRFLDHPEIYRSFLEILHT 37 (105)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccChHHHHHHHHHHHH
Confidence 567899998876666666666553
No 15
>2fbd_A Lysozyme 1; digestive lysozime, hydrolase; HET: PEG; 1.90A {Musca domestica} PDB: 2h5z_A* 3cb7_A
Probab=24.49 E-value=61 Score=16.91 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhCcccccccCc
Q psy17655 37 MIDCCKKVWRDEGLVREISKKE 58 (68)
Q Consensus 37 ~~~~~~~i~~~~G~~~gly~G~ 58 (68)
...|.++|++++|+ .. |.++
T Consensus 89 ~i~CAk~I~~~~G~-~a-W~~w 108 (122)
T 2fbd_A 89 SVTCARKIKSQQGW-TA-WSTW 108 (122)
T ss_dssp HHHHHHHHHHHHCG-GG-STTH
T ss_pred HHHHHHHHHHhcCC-cc-chhh
Confidence 47899999999998 54 4444
No 16
>1hml_A Alpha-lactalbumin; calcium-binding protein; 1.70A {Homo sapiens} SCOP: d.2.1.2
Probab=24.23 E-value=61 Score=17.42 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHhCcccccccCc
Q psy17655 37 MIDCCKKVWRDEGLVREISKKE 58 (68)
Q Consensus 37 ~~~~~~~i~~~~G~~~gly~G~ 58 (68)
...|.++|++++|+ .. |.++
T Consensus 107 ~i~CAk~I~~~~G~-~a-W~~w 126 (142)
T 1hml_A 107 DIMCAKKILDIKGI-DY-WLAH 126 (142)
T ss_dssp HHHHHHHHHHHTCG-GG-STHH
T ss_pred HHHHHHHHHHhcCc-ch-hHHH
Confidence 47899999999998 54 4444
No 17
>1iiz_A Lysozyme; hydrolase; 2.40A {Antheraea mylitta} SCOP: d.2.1.2 PDB: 1gd6_A
Probab=22.38 E-value=62 Score=16.86 Aligned_cols=20 Identities=15% Similarity=0.292 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhCcccccccCc
Q psy17655 37 MIDCCKKVWRDEGLVREISKKE 58 (68)
Q Consensus 37 ~~~~~~~i~~~~G~~~gly~G~ 58 (68)
...|.++|++++|+ .. |.++
T Consensus 87 ~v~CAk~I~~~~G~-~a-W~~w 106 (120)
T 1iiz_A 87 ASTCAKKIYKRTKF-DA-WSGW 106 (120)
T ss_dssp HHHHHHHHHHHHTT-TT-CHHH
T ss_pred HHHHHHHHHHhcCc-ch-HHHH
Confidence 47899999999998 54 4444
No 18
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=21.94 E-value=22 Score=17.40 Aligned_cols=29 Identities=17% Similarity=0.265 Sum_probs=13.0
Q ss_pred CCcHHHHHHHHHHHhCc---ccccccCccccc
Q psy17655 34 YSSMIDCCKKVWRDEGL---VREISKKEACNV 62 (68)
Q Consensus 34 ~~~~~~~~~~i~~~~G~---~~gly~G~~~~~ 62 (68)
+.+.-+-...++.+.|+ -+.+|+|+...+
T Consensus 8 ftsvne~vsavltqygvtgpnraiyqgfglkv 39 (100)
T 3f2e_A 8 FTAVAEQVSAVLSQYGITGPNRAIYQGFGLKV 39 (100)
T ss_dssp CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhcCCCccHHHHhhhhHHH
Confidence 33333444445555554 023566655443
No 19
>1b9o_A Protein (alpha-lactalbumin); calcium-binding protein, high resolution; 1.15A {Homo sapiens} SCOP: d.2.1.2 PDB: 1a4v_A 1alc_A 1hmk_A 1hfy_A 1f6r_A 1f6s_A 2g4n_A 1fkq_A 1fkv_A 1hfz_A 1hfx_A
Probab=21.62 E-value=58 Score=17.04 Aligned_cols=20 Identities=25% Similarity=0.283 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHhCcccccccCc
Q psy17655 37 MIDCCKKVWRDEGLVREISKKE 58 (68)
Q Consensus 37 ~~~~~~~i~~~~G~~~gly~G~ 58 (68)
...|.++|++++|+ .. |.++
T Consensus 88 ~i~CAk~I~~~~G~-~a-W~~w 107 (123)
T 1b9o_A 88 DIMCAKKILDIKGI-DY-WLAH 107 (123)
T ss_dssp HHHHHHHHHHHTTT-HH-HHTT
T ss_pred HHHHHHHHHHhcCc-ch-hHHH
Confidence 47899999999998 54 4444
No 20
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=20.59 E-value=37 Score=14.27 Aligned_cols=12 Identities=42% Similarity=0.631 Sum_probs=9.0
Q ss_pred hHHHHHHHHhhC
Q psy17655 19 PLDTVKVKMQTY 30 (68)
Q Consensus 19 P~d~vk~r~q~~ 30 (68)
-+|.||-+||.-
T Consensus 4 ~MdAIKKKMq~l 15 (40)
T 2z5i_I 4 SMDAIKKKMQML 15 (40)
T ss_dssp -CHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 458899998875
Done!