RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy17655
         (68 letters)



>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein. 
          Length = 96

 Score = 49.6 bits (119), Expect = 7e-10
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 10 GVALVYVGQPLDTVKVKMQ----TYPQLYSSMIDCCKKVWRDEGL 50
          G     V  PLD VK ++Q       + Y  ++DC KK++++EG+
Sbjct: 16 GAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGI 60


>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
           Provisional.
          Length = 300

 Score = 30.5 bits (69), Expect = 0.031
 Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 7/39 (17%)

Query: 19  PLDTVKVKM-------QTYPQLYSSMIDCCKKVWRDEGL 50
           P DTV+ +M             Y+  +DC KK+ ++EGL
Sbjct: 230 PFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGL 268


>gnl|CDD|177643 PHA03415, PHA03415, putative internal virion protein; Provisional.
          Length = 1019

 Score = 26.9 bits (59), Expect = 0.74
 Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 32  QLYSSMIDCCKKVWRDEGLVREISKKEACNVFVYK 66
           ++ S+  D     W D+GL +EI+K+E       K
Sbjct: 306 RMNSNEADGLFAAW-DDGLEKEIAKREGFGTAQIK 339


>gnl|CDD|220010 pfam08768, DUF1794, Domain of unknown function (DUF1794).  This
           domain forms a beta barrel structure but the function is
           unknown. The GO annotation for this protein indicates
           that the protein has a function in nematode larval
           development and has a positive regulation on growth
           rate.
          Length = 155

 Score = 25.6 bits (57), Expect = 1.5
 Identities = 6/25 (24%), Positives = 15/25 (60%)

Query: 5   LIRNRGVALVYVGQPLDTVKVKMQT 29
           L   RG+  +  G+ +D  +++++T
Sbjct: 80  LAHPRGIVEIAEGEAVDGPRIELRT 104


>gnl|CDD|176515 cd08573, GDPD_GDE1, Glycerophosphodiester phosphodiesterase domain
           of mammalian glycerophosphodiester phosphodiesterase
           GDE1 and similar proteins.  This subfamily corresponds
           to the glycerophosphodiester phosphodiesterase domain
           (GDPD) present in mammalian GDE1 (also known as MIR16,
           membrane interacting protein of RGS16) and their
           metazoan homologs. GDE1 is widely expressed in mammalian
           tissues, including the heart, brain, liver, and kidney.
           It shows sequence homology to bacterial
           glycerophosphodiester phosphodiesterases (GP-GDEs, EC
           3.1.4.46), which catalyzes the hydrolysis of various
           glycerophosphodiesters, and produce
           sn-glycerol-3-phosphate (G3P) and the corresponding
           alcohols. GDE1 has been characterized as GPI-GDE (EC
           3.1.4.44) that selectively hydrolyzes extracellular
           glycerophosphoinositol (GPI) to generate glycerol
           phosphate and inositol. It functions as an integral
           membrane-bound glycoprotein interacting with regulator
           of G protein signaling protein RGS16, and is modulated
           by G protein-coupled receptor (GPCR) signaling. In
           addition, GDE1 may interact with PRA1 domain family,
           member 2 (PRAF2, also known as JM4), which is an
           interacting protein of the G protein-coupled chemokine
           receptor CCR5. The catalytic activity, which is
           dependent on the integrity of the GDPD domain, is
           required for GDE1 cellular function.
          Length = 258

 Score = 24.1 bits (53), Expect = 5.9
 Identities = 8/21 (38%), Positives = 11/21 (52%)

Query: 20  LDTVKVKMQTYPQLYSSMIDC 40
           +D +K   + YP LY   I C
Sbjct: 117 VDALKNLFKKYPGLYDKAIVC 137


>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
           Provisional.
          Length = 506

 Score = 24.1 bits (53), Expect = 6.9
 Identities = 8/21 (38%), Positives = 13/21 (61%), Gaps = 1/21 (4%)

Query: 4   DLIRNRGVALVYVGQPLDTVK 24
           DL +  G+A +Y+   L+ VK
Sbjct: 188 DL-KAHGIACIYISHKLNEVK 207


>gnl|CDD|201127 pfam00273, Serum_albumin, Serum albumin family. 
          Length = 178

 Score = 23.8 bits (52), Expect = 7.6
 Identities = 6/17 (35%), Positives = 8/17 (47%)

Query: 27 MQTYPQLYSSMIDCCKK 43
           +     Y  + DCCKK
Sbjct: 74 DEELLSKYGKLADCCKK 90


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0775    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,238,898
Number of extensions: 219411
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 186
Number of HSP's successfully gapped: 7
Length of query: 68
Length of database: 10,937,602
Length adjustment: 39
Effective length of query: 29
Effective length of database: 9,207,796
Effective search space: 267026084
Effective search space used: 267026084
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)