RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17655
(68 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 46.9 bits (112), Expect = 3e-08
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 10 GVALVYVGQPLDTVKVKMQTYPQL-----YSSMIDCCKKVWRDEGL 50
G V V QP D VKV+ Q + Y S ++ K + R+EG+
Sbjct: 115 GALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGI 160
Score = 43.8 bits (104), Expect = 4e-07
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 10 GVALVYVGQPLDTVKVKMQ-TYPQLYSSMIDCCKKVWRDEGL 50
G + P+D VK + + Y S C + R EG
Sbjct: 213 GFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGP 254
Score = 43.8 bits (104), Expect = 4e-07
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 11/52 (21%)
Query: 10 GVALVYVGQPLDTVKVKMQT-----------YPQLYSSMIDCCKKVWRDEGL 50
+ PLDT KV++Q Y ++ + R EG
Sbjct: 12 ACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGP 63
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 42.6 bits (101), Expect = 1e-06
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 6/38 (15%)
Query: 19 PLDTVKVKMQT------YPQLYSSMIDCCKKVWRDEGL 50
P DTV+ +M +Y+ +DC +K+ +DEG
Sbjct: 229 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGP 266
Score = 39.2 bits (92), Expect = 2e-05
Identities = 9/40 (22%), Positives = 20/40 (50%), Gaps = 8/40 (20%)
Query: 19 PLDTVKVKMQT--------YPQLYSSMIDCCKKVWRDEGL 50
P++ VK+ +Q + Y +IDC ++ +++G
Sbjct: 27 PIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGF 66
Score = 38.4 bits (90), Expect = 3e-05
Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 9/46 (19%)
Query: 11 VALVYVGQPLDTVKVKMQ------TYPQLYSSMIDCCKKVWRDEGL 50
+ VY PLD + ++ + ++ + +C K+++ +GL
Sbjct: 127 LCFVY---PLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGL 169
>1ej6_D Sigma2; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_X
Length = 418
Score = 28.0 bits (61), Expect = 0.19
Identities = 10/47 (21%), Positives = 16/47 (34%)
Query: 5 LIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLV 51
LI N V V T + Q + M+ R +G++
Sbjct: 303 LIDNNSVPAVSRNIHGWTGRAGNQLHGFQVRRMVTEFCDRLRRDGVM 349
>2vak_A Sigma A; double-stranded RNA binding, RNA, viral protein; 2.34A
{Avian orthoreovirus}
Length = 423
Score = 26.8 bits (58), Expect = 0.50
Identities = 9/47 (19%), Positives = 17/47 (36%)
Query: 5 LIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDCCKKVWRDEGLV 51
+ N+GV +P ++ + + C + W GLV
Sbjct: 308 VFANQGVINQAQNRPGFSMNGGTPVHELNLLTTAQECIRQWVMAGLV 354
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 0.84
Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 20/71 (28%)
Query: 3 VDLIRNRGVALVYVGQPLDTVKVKMQTYPQLYSSMIDC----CKKVWRDEGL---VREIS 55
V+++ RG + V P D ++ Y MI + E L V +
Sbjct: 1783 VEVVFYRG-MTMQVAVPRD--ELGRSNY-----GMIAINPGRVAASFSQEALQYVVERVG 1834
Query: 56 KK-----EACN 61
K+ E N
Sbjct: 1835 KRTGWLVEIVN 1845
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 1.4
Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 14/68 (20%)
Query: 6 IRNRGVALVYVGQPLDTVKVKMQTYPQL--YSSMIDCCKKVWRDEGLVREISK---KEAC 60
IR+ A G L+T++ QL Y I C + E LV I K
Sbjct: 507 IRHDSTAWNASGSILNTLQ-------QLKFYKPYI--CDNDPKYERLVNAILDFLPKIEE 557
Query: 61 NVFVYKSS 68
N+ K +
Sbjct: 558 NLICSKYT 565
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase,
recombination; 3.80A {Enterobacteria phage MU}
Length = 193
Score = 23.7 bits (52), Expect = 5.8
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 3 VDLIRNRGVALVYVGQPLDT 22
V +R RG+ + +DT
Sbjct: 77 VGELRERGINFRSLTDSIDT 96
>3pdk_A Phosphoglucosamine mutase; 4-domain architecture, mixed A/B fold,
phosphohexomutase; 2.70A {Bacillus anthracis}
Length = 469
Score = 23.6 bits (52), Expect = 5.8
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 12 ALVYVGQPLDTVKVKMQTYPQL 33
+ +PL + +M +PQL
Sbjct: 372 IMKMTKKPLSELAGEMTKFPQL 393
>3i3w_A Phosphoglucosamine mutase; csgid, IDP02164, isomerase, magne
metal-binding, phosphoprotein, structural genomics; HET:
SEP; 2.30A {Francisella tularensis subsp}
Length = 443
Score = 23.6 bits (52), Expect = 6.1
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 12 ALVYVGQPLDTVKVKMQTYPQL 33
+P+ K++ + Q
Sbjct: 348 IFSQADKPVSEFKLQGELMQQT 369
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.407
Gapped
Lambda K H
0.267 0.0779 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,005,995
Number of extensions: 43097
Number of successful extensions: 96
Number of sequences better than 10.0: 1
Number of HSP's gapped: 91
Number of HSP's successfully gapped: 13
Length of query: 68
Length of database: 6,701,793
Length adjustment: 38
Effective length of query: 30
Effective length of database: 5,640,795
Effective search space: 169223850
Effective search space used: 169223850
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.3 bits)