BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17656
(85 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BIN|A Chain A, Structure Of The Dal-1 And Tslc1 (372-383) Complex
Length = 283
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
+ LLDGS +E++++G+ LFD+VC+HLNLLE+DYFGLTY + + + WL+
Sbjct: 7 VILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLD 59
>pdb|2HE7|A Chain A, Ferm Domain Of Epb41l3 (Dal-1)
Length = 283
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 41/53 (77%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
+ LLDGS +E++++G+ LFD+VC+HLNLLE+DYFGLTY + + + WL+
Sbjct: 7 VILLDGSEYTCDVEKRSRGQVLFDKVCEHLNLLEKDYFGLTYRDAENQKNWLD 59
>pdb|1GG3|A Chain A, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|B Chain B, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
pdb|1GG3|C Chain C, Crystal Structure Of The Protein 4.1r Membrane Binding
Domain
Length = 279
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
++LLD ++ + +E+ AKG+DL RVC+HLNLLE DYFGL + + WL+
Sbjct: 5 VSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD 57
>pdb|3QIJ|A Chain A, Primitive-Monoclinic Crystal Structure Of The Ferm
Domain Of Protein 4.1r
pdb|3QIJ|B Chain B, Primitive-Monoclinic Crystal Structure Of The Ferm
Domain Of Protein 4.1r
Length = 296
Score = 58.9 bits (141), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
++LLD ++ + +E+ AKG+DL RVC+HLNLLE DYFGL + + WL+
Sbjct: 22 VSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLD 74
>pdb|1H4R|B Chain B, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 35 LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
++ E K KG+DLFD VC L L E +FGL Y K D WL+M
Sbjct: 34 MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKM 78
>pdb|1H4R|A Chain A, Crystal Structure Of The Ferm Domain Of Merlin, The
Neurofibromatosis 2 Tumor Suppressor Protein
Length = 314
Score = 40.0 bits (92), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Query: 35 LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
++ E K KG+DLFD VC L L E +FGL Y K D WL+M
Sbjct: 34 MEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKM 78
>pdb|3U8Z|A Chain A, Human Merlin Ferm Domain
pdb|3U8Z|B Chain B, Human Merlin Ferm Domain
pdb|3U8Z|C Chain C, Human Merlin Ferm Domain
pdb|3U8Z|D Chain D, Human Merlin Ferm Domain
Length = 300
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 11 APPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN 70
P ++P K I +D + + E K KG+DLFD VC L L E +FGL Y
Sbjct: 1 GPLGSQP---KTFTVRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTI 56
Query: 71 KYDPQCWLEM 80
K D WL+M
Sbjct: 57 K-DTVAWLKM 65
>pdb|1ISN|A Chain A, Crystal Structure Of Merlin Ferm Domain
Length = 323
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
I +D + + E K KG+DLFD VC L L E +FGL Y K D WL+M
Sbjct: 7 VRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKM 60
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 34.7 bits (78), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY-DNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E YFGL Y DNK P WL++
Sbjct: 6 VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTIGLREVWYFGLHYVDNKGFP-TWLKL 60
>pdb|1SGH|A Chain A, Moesin Ferm Domain Bound To Ebp50 C-Terminal Peptide
Length = 297
Score = 33.5 bits (75), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 7 VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL 61
>pdb|1E5W|A Chain A, Structure Of Isolated Ferm Domain And First Long Helix
Of Moesin
Length = 346
Score = 33.5 bits (75), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 7 VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL 61
>pdb|2ZPY|A Chain A, Crystal Structure Of The Mouse Radxin Ferm Domain
Complexed With The Mouse Cd44 Cytoplasmic Peptide
Length = 312
Score = 33.1 bits (74), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 13 PKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY 72
P KP+ +T +D L + I+ G+ LFD+V + L E +FGL Y +
Sbjct: 2 PMPKPIN-----VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSK 55
Query: 73 DPQCWLEM 80
WL++
Sbjct: 56 GYSTWLKL 63
>pdb|2D10|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D10|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-1 C-Terminal Tail Peptide
pdb|2D11|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2D11|D Chain D, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nherf-2 C-Terminal Tail Peptide
pdb|2YVC|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|B Chain B, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
pdb|2YVC|C Chain C, Crystal Structure Of The Radixin Ferm Domain Complexed
With The Nep Cytoplasmic Tail
Length = 312
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 9 VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKL 63
>pdb|2D2Q|A Chain A, Crystal Structure Of The Dimerized Radixin Ferm Domain
pdb|2D2Q|B Chain B, Crystal Structure Of The Dimerized Radixin Ferm Domain
Length = 310
Score = 32.7 bits (73), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 7 VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKL 61
>pdb|2EMT|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMT|B Chain B, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Psgl-1
pdb|2EMS|A Chain A, Crystal Structure Analysis Of The Radixin Ferm Domain
Complexed With Adhesion Molecule Cd43
Length = 322
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 9 VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKL 63
>pdb|1J19|A Chain A, Crystal Structure Of The Radxin Ferm Domain Complexed
With The Icam-2 Cytoplasmic Peptide
Length = 317
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 7 VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKL 61
>pdb|1GC6|A Chain A, Crystal Structure Of The Radixin Ferm Domain Complexed
With Inositol-(1,4,5)-Triphosphate
pdb|1GC7|A Chain A, Crystal Structure Of The Radixin Ferm Domain
Length = 297
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 7 VRVTTMDAEL-EFAIQPNTTGKQLFDQVVKTVGLREVWFFGLQYVDSKGYSTWLKL 61
>pdb|2I1J|A Chain A, Moesin From Spodoptera Frugiperda At 2.1 Angstroms
Resolution
pdb|2I1K|A Chain A, Moesin From Spodoptera Frugiperda Reveals The
Coiled-Coil Domain At 3.0 Angstrom Resolution
Length = 575
Score = 32.0 bits (71), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I++ G+ LFD+V + L E +FGL Y + W+++
Sbjct: 8 RVTTMDAEL-EFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKL 61
>pdb|1EF1|A Chain A, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
pdb|1EF1|B Chain B, Crystal Structure Of The Moesin Ferm DomainTAIL DOMAIN
COMPLEX
Length = 294
Score = 31.2 bits (69), Expect = 0.16, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 35 LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
L+ I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 13 LEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL 58
>pdb|1OLZ|A Chain A, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|1OLZ|B Chain B, The Ligand-Binding Face Of The Semaphorins Revealed By The
High Resolution Crystal Structure Of Sema4d
pdb|3OL2|A Chain A, Receptor-Ligand Structure Of Human Semaphorin 4d With
Plexin B1
Length = 663
Score = 27.7 bits (60), Expect = 1.9, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 45 GEDLFDRVCDHLNLLERDYFGLTYDNK----YDP 74
G + F CDHLNL + G D K +DP
Sbjct: 106 GTNAFQPACDHLNLTSFKFLGKNEDGKGRCPFDP 139
>pdb|3VTE|A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase
From Cannabis Sativa
Length = 518
Score = 26.9 bits (58), Expect = 2.6, Method: Composition-based stats.
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 4/25 (16%)
Query: 25 AHITLLDGSLLDVTIERKAKGEDLF 49
AH+ +DG +LD RK+ GEDLF
Sbjct: 180 AHLVNVDGKVLD----RKSMGEDLF 200
>pdb|1GM6|A Chain A, 3-D Structure Of A Salivary Lipocalin From Boar
Length = 175
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 21 KIEVAHITLLDGSLLDVTIERKAKGEDL-FDRVCDHL 56
++ V HI +LD S L +RK GE F VCD +
Sbjct: 42 RVFVEHIRVLDNSSLAFKFQRKVNGECTDFYAVCDKV 78
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,727,401
Number of Sequences: 62578
Number of extensions: 98382
Number of successful extensions: 222
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 202
Number of HSP's gapped (non-prelim): 27
length of query: 85
length of database: 14,973,337
effective HSP length: 53
effective length of query: 32
effective length of database: 11,656,703
effective search space: 373014496
effective search space used: 373014496
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)