Query psy17656
Match_columns 85
No_of_seqs 113 out of 499
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 19:37:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17656.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17656hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qij_A Protein 4.1; cytoskelet 99.7 3.9E-17 1.3E-21 119.0 6.4 65 19-83 14-78 (296)
2 1h4r_A Merlin; FERM, neurofibr 99.6 6.7E-16 2.3E-20 112.2 7.4 65 17-83 17-81 (314)
3 1ef1_A Moesin; membrane, FERM 99.6 2.2E-15 7.5E-20 108.3 7.8 61 22-83 1-61 (294)
4 2i1j_A Moesin; FERM, coiled-co 99.6 9.3E-15 3.2E-19 115.3 8.3 63 20-83 2-64 (575)
5 3ivf_A Talin-1; FERM domain, c 99.5 1.1E-13 3.8E-18 102.8 6.9 65 19-83 82-150 (371)
6 2al6_A Focal adhesion kinase 1 99.2 1.8E-11 6.2E-16 91.5 6.6 63 21-83 6-73 (375)
7 2j0j_A Focal adhesion kinase 1 99.2 2.4E-11 8.2E-16 95.7 6.2 61 23-83 8-73 (656)
8 3au4_A Myosin-X; protein-prote 99.1 2.3E-10 7.8E-15 88.8 8.5 62 20-82 214-276 (555)
9 3pvl_A Myosin VIIA isoform 1; 99.1 1.7E-10 5.9E-15 92.1 7.4 54 19-72 260-313 (655)
10 4dxa_B KREV interaction trappe 98.4 9.9E-08 3.4E-12 69.6 3.2 49 22-74 5-57 (322)
11 4eku_A Protein-tyrosine kinase 98.2 2.8E-06 9.7E-11 64.3 7.0 65 19-83 18-93 (392)
12 2kc2_A Talin-1, F1; FERM, adhe 97.8 0.00017 5.8E-09 47.5 7.9 51 20-70 9-59 (128)
13 1vd2_A Protein kinase C, IOTA 96.1 0.048 1.6E-06 33.6 7.7 55 20-75 4-58 (89)
14 2al3_A TUG long isoform; TUG U 96.0 0.0098 3.3E-07 37.0 4.4 49 21-70 8-56 (90)
15 1wgr_A Growth factor receptor- 94.9 0.096 3.3E-06 32.9 6.2 49 19-67 6-54 (100)
16 3dbh_I NEDD8; cell cycle, acti 94.3 0.24 8.1E-06 28.6 6.6 42 18-59 8-49 (88)
17 2k8h_A Small ubiquitin protein 94.1 0.28 9.5E-06 30.9 7.0 45 16-60 20-64 (110)
18 3v6c_B Ubiquitin; structural g 94.0 0.22 7.5E-06 29.3 6.2 42 18-59 13-54 (91)
19 1wz0_A Ubiquitin-like protein 94.0 0.33 1.1E-05 30.2 7.2 42 19-60 21-62 (104)
20 3a4r_A Nfatc2-interacting prot 93.7 0.27 9.1E-06 28.8 6.0 43 19-61 4-47 (79)
21 1ttn_A DC-UBP, dendritic cell- 93.6 0.18 6.2E-06 30.8 5.4 45 15-59 16-60 (106)
22 1wm3_A Ubiquitin-like protein 93.4 0.2 7E-06 28.7 5.1 38 23-60 2-39 (72)
23 1wyw_B Ubiquitin-like protein 93.3 0.22 7.6E-06 29.9 5.4 43 17-59 16-58 (97)
24 2eke_C Ubiquitin-like protein 93.1 0.34 1.2E-05 30.4 6.2 43 16-59 25-67 (106)
25 2d07_B Ubiquitin-like protein 92.9 0.3 1E-05 29.5 5.6 42 19-60 14-55 (93)
26 3pge_A SUMO-modified prolifera 92.9 0.24 8.2E-06 34.4 5.6 65 2-68 8-73 (200)
27 3mtn_B UBA80, ubcep1, ubiquiti 92.8 0.32 1.1E-05 27.7 5.4 39 21-59 2-40 (85)
28 2io1_B Small ubiquitin-related 92.7 0.27 9.3E-06 29.9 5.2 41 20-60 5-45 (94)
29 2io0_B Small ubiquitin-related 92.7 0.3 1E-05 29.6 5.4 40 21-60 4-43 (91)
30 3dad_A FH1/FH2 domain-containi 92.2 0.24 8.4E-06 37.0 5.3 58 21-81 14-85 (339)
31 4dwf_A HLA-B-associated transc 92.0 0.57 1.9E-05 27.2 5.8 39 21-59 4-42 (90)
32 3kyd_D Small ubiquitin-related 91.9 0.36 1.2E-05 30.8 5.2 42 18-59 36-77 (115)
33 1ndd_A NEDD8, protein (ubiquit 91.9 0.35 1.2E-05 26.8 4.6 45 23-68 1-45 (76)
34 3a9j_A Ubiquitin; protein comp 91.8 0.4 1.4E-05 26.5 4.8 45 23-68 1-45 (76)
35 4gmv_A RAS-associated and plec 91.6 0.49 1.7E-05 34.3 6.2 46 21-66 30-75 (281)
36 4hcn_B Polyubiquitin, ubiquiti 91.6 0.38 1.3E-05 28.8 4.8 44 16-59 16-59 (98)
37 2dzi_A Ubiquitin-like protein 91.6 0.78 2.7E-05 25.8 6.0 39 21-59 6-44 (81)
38 3n3k_B Ubiquitin; hydrolase, p 91.6 0.29 9.9E-06 27.9 4.1 39 22-60 3-41 (85)
39 2uyz_B Small ubiquitin-related 91.4 0.55 1.9E-05 26.6 5.3 38 22-59 3-40 (79)
40 1wh3_A 59 kDa 2'-5'-oligoadeny 91.2 0.75 2.6E-05 26.4 5.8 47 21-68 6-52 (87)
41 3phx_B Ubiquitin-like protein 91.2 0.7 2.4E-05 26.1 5.5 39 21-59 3-41 (79)
42 2dzk_A UBX domain-containing p 90.9 1.5 5.1E-05 27.2 7.3 50 17-67 8-57 (109)
43 4eew_A Large proline-rich prot 90.7 0.91 3.1E-05 26.2 5.8 42 18-59 13-54 (88)
44 3k9o_B Ubiquitin, UBB+1; E2-25 90.3 0.6 2.1E-05 27.4 4.8 37 23-59 2-38 (96)
45 1yx5_B Ubiquitin; proteasome, 90.0 0.68 2.3E-05 27.5 4.9 37 23-59 1-37 (98)
46 1wgy_A RAP guanine nucleotide 89.5 1.5 5.2E-05 27.6 6.3 62 19-81 6-67 (104)
47 1wx8_A Riken cDNA 4931431F19; 89.4 2.1 7.1E-05 25.1 7.1 40 19-59 14-53 (96)
48 1q1o_A Cell division control p 89.4 1.2 4E-05 27.8 5.7 53 22-74 5-68 (98)
49 2hj8_A Interferon-induced 17 k 89.2 1.5 5.3E-05 25.5 6.0 39 21-59 3-41 (88)
50 4fbj_B NEDD8; effector-HOST ta 89.0 0.91 3.1E-05 26.6 4.8 37 23-59 1-37 (88)
51 3u30_A Ubiquitin, linear DI-ub 88.7 1 3.5E-05 29.4 5.4 44 16-59 14-57 (172)
52 2kk8_A Uncharacterized protein 88.2 1.8 6.2E-05 25.2 5.8 49 19-68 7-55 (84)
53 2faz_A Ubiquitin-like containi 88.2 1.4 4.7E-05 24.7 5.1 46 22-68 2-49 (78)
54 3vdz_A Ubiquitin-40S ribosomal 88.0 1.9 6.4E-05 26.4 6.0 41 19-59 32-72 (111)
55 1sif_A Ubiquitin; hydrophobic 88.0 1.1 3.8E-05 26.1 4.8 38 22-59 9-46 (88)
56 2jxx_A Nfatc2-interacting prot 87.9 2.3 7.9E-05 26.1 6.3 45 17-61 20-65 (97)
57 3uf8_A Ubiquitin-like protein 87.8 1.2 4.1E-05 30.5 5.5 53 9-62 8-60 (209)
58 3ivf_A Talin-1; FERM domain, c 87.4 1.9 6.4E-05 31.4 6.6 61 22-83 3-67 (371)
59 1yqb_A Ubiquilin 3; structural 87.3 2.6 8.9E-05 25.3 6.3 51 16-68 16-66 (100)
60 1wy8_A NP95-like ring finger p 87.1 2.5 8.7E-05 24.2 6.0 47 21-68 6-54 (89)
61 2ojr_A Ubiquitin; lanthide-bin 86.8 1.9 6.6E-05 26.3 5.6 39 21-59 34-72 (111)
62 1v2y_A 3300001G02RIK protein; 86.5 1.2 4.1E-05 27.7 4.5 40 20-59 5-44 (105)
63 2kdi_A Ubiquitin, vacuolar pro 86.3 1.6 5.6E-05 26.9 5.1 41 19-59 6-46 (114)
64 2wyq_A HHR23A, UV excision rep 86.2 2.8 9.7E-05 23.7 5.8 36 21-56 4-39 (85)
65 3hk0_A Growth factor receptor- 85.6 1.8 6.3E-05 30.8 5.6 47 21-67 7-53 (256)
66 1oey_A P67-PHOX, neutrophil cy 84.9 4.6 0.00016 24.3 7.0 47 22-71 5-51 (83)
67 2bwf_A Ubiquitin-like protein 84.0 3.2 0.00011 22.8 5.2 44 23-68 5-48 (77)
68 2l76_A Nfatc2-interacting prot 83.9 5.7 0.0002 24.5 7.0 43 18-61 17-59 (95)
69 3b08_A Polyubiquitin-C, ubiqui 83.5 5.9 0.0002 24.5 7.3 48 20-68 74-121 (152)
70 3b08_A Polyubiquitin-C, ubiqui 82.4 2.6 8.8E-05 26.2 4.8 37 23-59 1-37 (152)
71 1wx7_A Ubiquilin 3; ubiquitin- 81.9 6.3 0.00021 23.6 6.6 49 18-68 13-61 (106)
72 2dhz_A RAP guanine nucleotide 81.9 5.2 0.00018 25.7 6.1 61 21-81 8-73 (120)
73 3m62_B UV excision repair prot 81.7 2.1 7.2E-05 26.0 4.0 37 23-59 2-38 (106)
74 3tca_A Amyloid beta A4 precurs 81.4 4.5 0.00015 27.7 6.1 46 21-66 33-78 (291)
75 2kzr_A Ubiquitin thioesterase 81.0 1.4 4.9E-05 25.6 3.0 45 23-69 1-46 (86)
76 3q3f_A Ribonuclease/ubiquitin 80.3 4.5 0.00015 27.5 5.7 41 19-59 102-142 (189)
77 2bye_A Phospholipase C, epsilo 79.7 3.1 0.0001 26.5 4.4 52 17-68 4-60 (110)
78 3tix_A Ubiquitin-like protein 79.1 4.5 0.00015 28.3 5.4 42 18-60 53-94 (207)
79 1v86_A DNA segment, CHR 7, way 79.1 7.7 0.00026 22.9 6.7 40 19-59 14-53 (95)
80 1wju_A NEDD8 ultimate buster-1 78.9 8.9 0.00031 23.5 6.4 51 18-69 11-65 (100)
81 1we6_A Splicing factor, putati 78.7 5 0.00017 24.3 5.1 40 20-59 25-68 (111)
82 1s3s_G P47 protein; AAA ATPase 78.1 7.8 0.00027 24.5 6.0 49 20-68 50-98 (127)
83 1wj4_A KIAA0794 protein; UBX d 78.1 10 0.00036 23.8 7.1 48 18-67 39-86 (124)
84 1uh6_A Ubiquitin-like 5; beta- 77.5 10 0.00034 23.3 6.8 41 19-59 25-65 (100)
85 2klc_A Ubiquilin-1; ubiquitin- 77.1 7.5 0.00026 23.2 5.5 40 19-59 22-61 (101)
86 3rt3_B Ubiquitin-like protein 76.8 9.3 0.00032 24.1 6.2 40 20-59 79-118 (159)
87 1wf9_A NPL4 family protein; be 76.6 6.5 0.00022 23.8 5.2 35 23-58 8-43 (107)
88 2pjh_A Protein NPL4, nuclear p 76.4 1.6 5.3E-05 25.6 2.1 46 21-68 3-48 (80)
89 3l0w_B Monoubiquitinated proli 76.4 4.8 0.00016 26.5 4.8 37 23-59 1-37 (169)
90 1uel_A HHR23B, UV excision rep 76.0 9.5 0.00032 22.3 5.9 34 23-56 1-34 (95)
91 3rt3_B Ubiquitin-like protein 75.7 5.2 0.00018 25.4 4.7 37 23-59 3-39 (159)
92 3v7o_A Minor nucleoprotein VP3 75.4 0.57 2E-05 33.3 0.0 50 9-59 8-57 (227)
93 2daj_A KIAA0977 protein, COBL- 75.3 12 0.0004 23.0 6.9 63 18-83 6-68 (91)
94 1j8c_A Ubiquitin-like protein 75.0 13 0.00043 23.2 7.1 39 20-59 30-68 (125)
95 2cr5_A Reproduction 8; UBX dom 74.9 12 0.0004 22.9 6.9 47 19-67 20-66 (109)
96 3b1l_X E3 ubiquitin-protein li 76.6 0.63 2.2E-05 26.0 0.0 37 23-59 1-37 (76)
97 3plu_A Ubiquitin-like modifier 73.7 11 0.00036 23.1 5.5 44 16-59 15-58 (93)
98 1wia_A Hypothetical ubiquitin- 72.7 11 0.00039 21.7 5.5 36 21-56 6-41 (95)
99 2l05_A Serine/threonine-protei 72.6 9.7 0.00033 23.6 5.1 37 23-59 18-54 (95)
100 3qx1_A FAS-associated factor 1 71.8 12 0.00041 21.6 5.4 45 21-67 6-50 (84)
101 2kdb_A Homocysteine-responsive 70.5 15 0.00051 22.1 5.8 40 17-56 18-59 (99)
102 2kan_A Uncharacterized protein 69.3 15 0.0005 21.6 5.9 38 21-59 14-51 (94)
103 2gow_A HCG-1 protein, ubiquiti 68.6 17 0.00059 22.9 5.9 35 21-55 16-50 (125)
104 1wgh_A Ubiquitin-like 3, HCG-1 68.0 16 0.00054 22.8 5.6 37 19-55 13-49 (116)
105 1pqs_A Cell division control p 67.8 7 0.00024 23.0 3.6 41 34-74 3-47 (77)
106 1c1y_B Proto-onkogene serine/t 67.3 15 0.0005 21.9 5.0 36 24-59 3-38 (77)
107 1wxm_A A-RAF proto-oncogene se 66.3 14 0.00048 22.4 4.8 36 24-59 9-44 (86)
108 2l7r_A Ubiquitin-like protein 66.0 12 0.0004 21.9 4.5 46 20-68 17-62 (93)
109 1wgd_A Homocysteine-responsive 64.9 13 0.00045 21.4 4.5 38 21-58 6-47 (93)
110 1rrb_A RAF-1 RBD, RAF proto-on 64.0 14 0.00049 23.3 4.7 36 24-59 20-55 (107)
111 3u5e_m 60S ribosomal protein L 63.6 1.5 5E-05 27.6 0.0 37 23-59 1-37 (128)
112 3ix6_A TS, tsase, thymidylate 62.7 1.6 5.3E-05 32.9 0.0 50 9-59 8-57 (360)
113 3ai5_A Yeast enhanced green fl 62.0 19 0.00063 26.3 5.7 40 20-59 231-270 (307)
114 1we7_A SF3A1 protein; structur 61.3 24 0.00083 21.3 5.5 40 20-59 23-72 (115)
115 1v5o_A 1700011N24RIK protein; 61.0 23 0.00079 20.9 6.3 38 22-59 7-48 (102)
116 3cf6_E RAP guanine nucleotide 60.1 62 0.0021 25.6 9.2 59 15-75 345-403 (694)
117 2c5l_C Phosphoinositide-specif 57.9 33 0.0011 21.7 6.6 50 20-69 5-64 (117)
118 3u30_A Ubiquitin, linear DI-ub 54.9 38 0.0013 21.6 6.5 40 21-60 95-134 (172)
119 3u5c_f 40S ribosomal protein S 53.8 2.7 9.3E-05 27.5 0.0 37 23-59 1-37 (152)
120 1wgg_A Ubiquitin carboxyl-term 53.5 32 0.0011 20.2 5.3 38 21-59 6-44 (96)
121 3ny5_A Serine/threonine-protei 52.8 35 0.0012 21.1 5.0 36 24-59 15-50 (96)
122 1v5t_A 8430435I17RIK protein; 51.2 21 0.00071 20.6 3.7 37 22-59 7-44 (90)
123 3m63_B Ubiquitin domain-contai 50.9 6.9 0.00024 23.5 1.5 40 19-59 25-64 (101)
124 1se9_A Ubiquitin family; ubiqu 50.3 46 0.0016 21.1 5.6 36 21-56 15-51 (126)
125 2lxa_A Ubiquitin-like protein 50.0 18 0.0006 21.3 3.2 36 23-58 2-40 (87)
126 2kd0_A LRR repeats and ubiquit 48.3 36 0.0012 19.3 4.9 38 21-59 11-48 (85)
127 3goe_A DNA repair protein RAD6 47.3 44 0.0015 20.0 6.7 59 19-82 6-64 (82)
128 4da1_A Protein phosphatase 1K, 44.1 4.8 0.00016 29.5 0.0 44 17-61 25-68 (389)
129 1ip9_A BEM1 protein; ubiquitin 38.7 64 0.0022 19.4 5.7 37 21-58 11-47 (85)
130 2xzm_9 RPS31E; ribosome, trans 38.5 6.6 0.00022 26.9 0.0 37 23-59 1-37 (189)
131 2daf_A FLJ35834 protein; hypot 37.6 77 0.0026 20.0 5.3 40 20-59 13-53 (118)
132 3o27_A Putative uncharacterize 36.5 26 0.00089 20.4 2.4 25 50-74 31-55 (68)
133 2dzm_A FAS-associated factor 1 35.8 71 0.0024 19.1 5.9 41 21-62 8-49 (100)
134 4a20_A Ubiquitin-like protein 34.2 75 0.0026 18.9 6.5 40 19-58 16-58 (98)
135 2kkc_A Sequestosome-1; P62, PB 33.6 83 0.0028 19.2 6.8 58 20-78 3-77 (102)
136 4dbg_A Ranbp-type and C3HC4-ty 33.1 85 0.0029 19.2 5.3 49 21-69 21-76 (105)
137 2kmm_A Guanosine-3',5'-BIS(dip 33.1 55 0.0019 17.6 3.4 27 24-52 2-28 (73)
138 3shq_A UBLCP1; phosphatase, hy 32.1 93 0.0032 22.4 5.3 38 21-59 4-41 (320)
139 2bt6_A Adrenodoxin 1; rutheniu 31.4 72 0.0025 18.7 4.0 31 21-54 5-35 (108)
140 1x1m_A Ubiquitin-like protein 30.7 57 0.002 19.3 3.4 39 21-59 11-63 (107)
141 3i9v_5 NADH-quinone oxidoreduc 28.5 30 0.001 23.8 2.0 53 22-81 87-139 (207)
142 1otg_A 5-carboxymethyl-2-hydro 27.7 60 0.0021 19.9 3.2 54 21-77 59-115 (125)
143 1oqy_A HHR23A, UV excision rep 27.6 56 0.0019 24.2 3.5 36 21-56 6-41 (368)
144 2bps_A YUKD protein; ubiquitin 27.1 99 0.0034 18.1 5.7 50 21-70 3-56 (81)
145 2l32_A Small archaeal modifier 26.9 90 0.0031 17.6 4.4 37 23-63 1-37 (74)
146 3hui_A Ferredoxin; cytochrome 26.9 1.2E+02 0.004 18.8 4.6 38 18-59 17-54 (126)
147 2ktr_A Sequestosome-1; autopha 26.8 1.2E+02 0.0042 19.0 6.6 57 21-78 19-92 (117)
148 1wjn_A Tubulin-folding protein 25.5 1E+02 0.0035 17.7 5.9 52 18-70 5-59 (97)
149 2za4_B Barstar; protein-protei 24.9 67 0.0023 18.6 2.9 29 35-65 4-32 (90)
150 3e6q_A Putative 5-carboxymethy 24.2 62 0.0021 20.8 2.9 46 19-67 79-124 (146)
151 1wxv_A BAG-family molecular ch 23.6 1.1E+02 0.0036 17.2 6.0 38 21-59 6-48 (92)
152 3vpp_A C-type lectin domain fa 22.8 1.2E+02 0.0041 17.5 3.9 23 59-81 61-83 (132)
153 3jyu_A Ubiquitin carboxyl-term 22.1 1.9E+02 0.0064 19.6 7.6 37 35-71 154-190 (231)
154 4a3p_A Ubiquitin carboxyl-term 20.2 2E+02 0.0069 19.2 5.0 27 35-61 142-168 (217)
No 1
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=99.68 E-value=3.9e-17 Score=118.99 Aligned_cols=65 Identities=38% Similarity=0.709 Sum_probs=60.0
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY 83 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~ 83 (85)
..+.+.|+|.+|||+..++.|+++++|++|++.||++|||.|.+||||+|.+.+++.+|||++|+
T Consensus 14 ~~~~~~~~V~lldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~k~ 78 (296)
T 3qij_A 14 LYFQGHCKVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSAKE 78 (296)
T ss_dssp ---CCEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTTSB
T ss_pred CCceEEEEEEccCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccchh
Confidence 45778999999999999999999999999999999999999999999999998899999999874
No 2
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=99.62 E-value=6.7e-16 Score=112.20 Aligned_cols=65 Identities=37% Similarity=0.556 Sum_probs=58.2
Q ss_pred CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656 17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY 83 (85)
Q Consensus 17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~ 83 (85)
+++++.+.|+|.++|| ++++.++++++|++|++.||++|||.|.+||||.|. .+++.+|||++|+
T Consensus 17 ~~~~~~~~~~V~lldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~-~~~~~~wL~~~~~ 81 (314)
T 1h4r_A 17 RKQPKTFTVRIVTMDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYT-IKDTVAWLKMDKK 81 (314)
T ss_dssp ----CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEE-ETTEEEECCTTSB
T ss_pred CCCCCeeEEEEEeCCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEE-eCCcCeeCCCccC
Confidence 3467999999999999 788999999999999999999999999999999999 7789999999875
No 3
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=99.60 E-value=2.2e-15 Score=108.30 Aligned_cols=61 Identities=28% Similarity=0.530 Sum_probs=57.4
Q ss_pred eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656 22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY 83 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~ 83 (85)
.+.|+|.++|| +.++.++++++|++|++.||++|||.|.+||||.|.+.++..+|||++++
T Consensus 1 ~i~~~V~l~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~~~ 61 (294)
T 1ef1_A 1 TISVRVTTMDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKLNKK 61 (294)
T ss_dssp CEEEEEEETTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCSSSB
T ss_pred CEEEEEEECCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeecccccC
Confidence 37899999999 67899999999999999999999999999999999999999999999875
No 4
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=99.55 E-value=9.3e-15 Score=115.27 Aligned_cols=63 Identities=27% Similarity=0.523 Sum_probs=59.0
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY 83 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~ 83 (85)
++.+.|+|.++|| +++|.|+++++|++||+.||.+|||.|.+||||.|.+.++..+|||++++
T Consensus 2 ~k~i~v~V~llDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~k~ 64 (575)
T 2i1j_A 2 PKSMNVRVTTMDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLYKK 64 (575)
T ss_dssp -CEEEEEEECSSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTTSB
T ss_pred CceEEEEEEeCCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhcccc
Confidence 5789999999999 67899999999999999999999999999999999999999999999875
No 5
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=99.45 E-value=1.1e-13 Score=102.75 Aligned_cols=65 Identities=18% Similarity=0.394 Sum_probs=55.3
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC----CCCeeccccCCC
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK----YDPQCWLEMVNY 83 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~----~~~~~WLd~~K~ 83 (85)
..+.+.|+|.|+||+...+.++++++|+++++.||++|||.|.+||||.+.+. ++...||+++|+
T Consensus 82 ~~~~~~~~V~l~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~~k~ 150 (371)
T 3ivf_A 82 RKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDHGRT 150 (371)
T ss_dssp EECEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCTTSB
T ss_pred cCceeEEEEECcCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhcCch
Confidence 34678999999999999999999999999999999999999999999999874 578899999875
No 6
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Probab=99.22 E-value=1.8e-11 Score=91.47 Aligned_cols=63 Identities=11% Similarity=0.149 Sum_probs=57.3
Q ss_pred CeEEEEEEecCCC----EEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC-CCCeeccccCCC
Q psy17656 21 KIEVAHITLLDGS----LLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK-YDPQCWLEMVNY 83 (85)
Q Consensus 21 ~~~~~~V~LLD~t----~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLd~~K~ 83 (85)
....|+|.|+||+ ...|.+++.++|++|++.||++|+|.|.+||||++.+. .++.+||+++++
T Consensus 6 ~~~~l~V~l~~g~~~~~~~~~~~~~~tt~~dl~~~v~~~lgL~~~~~FgL~~~~~~~~~~~wL~~~~~ 73 (375)
T 2al6_A 6 VLKVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMG 73 (375)
T ss_dssp EEEEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEETTSSCEEEECTTSB
T ss_pred ccceEEEEecCCCCCCceEEEEeCCCCCHHHHHHHHHHHcCCCeEeEEEEEEEEcCCCceEeeCCccc
Confidence 4567789999998 99999999999999999999999999999999999875 578899999874
No 7
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=99.18 E-value=2.4e-11 Score=95.66 Aligned_cols=61 Identities=11% Similarity=0.147 Sum_probs=56.6
Q ss_pred EEEEEEecCCC----EEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC-CCCeeccccCCC
Q psy17656 23 EVAHITLLDGS----LLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK-YDPQCWLEMVNY 83 (85)
Q Consensus 23 ~~~~V~LLD~t----~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~-~~~~~WLd~~K~ 83 (85)
-.|.|.+.|+. ...+.+..++++++|++.||++|+|.|.+||||+|.+. .++.+||+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~i~~~v~~~l~i~~~~~fgL~~~~~~~~~~~wl~~~~~ 73 (656)
T 2j0j_A 8 KVFHYFENSSEPTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWLHLDMG 73 (656)
T ss_dssp EEECCCCCSSCGGGCEEEEEECTTCBHHHHHHHHHHHTTCSCGGGEEEEEEESSSCCEEEECTTSB
T ss_pred hheEEeccCCCCCCceeEEEeCCCCcHHHHHHHHHHhcCcceeeeEEEEEeecccCceeeeCCCCc
Confidence 46779999988 99999999999999999999999999999999999987 699999999875
No 8
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=99.11 E-value=2.3e-10 Score=88.79 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=55.0
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc-cceeeEEEecCCCCeeccccCC
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE-RDYFGLTYDNKYDPQCWLEMVN 82 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLd~~K 82 (85)
++.+.|+|.++||+...+.+++.++|++|++.||++|||.| .+||||.+.+ .+..+||++++
T Consensus 214 ~~~~~~~V~l~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~~~-~~~~~~L~~~~ 276 (555)
T 3au4_A 214 RQEMTSTVYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYN-GHVDKAIESRT 276 (555)
T ss_dssp TCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEEES-SSCEEECCTTS
T ss_pred CCCcceEEEecCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEEEe-CCeeEecCCCC
Confidence 56799999999999999999999999999999999999998 8999998765 45667887764
No 9
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=99.09 E-value=1.7e-10 Score=92.14 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=50.2
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCC
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY 72 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~ 72 (85)
.++.+.|+|.++||+..+|.|++.++|+++++.||++|||.|.+||||.|.+.+
T Consensus 260 ~~~~i~~~V~llDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~~~~d 313 (655)
T 3pvl_A 260 SKKPIMLPVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFD 313 (655)
T ss_dssp HTCCEEEEEEETTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEEEETT
T ss_pred cCCceEEEEEecCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEEecCC
Confidence 346789999999999999999999999999999999999999999999998654
No 10
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein interaction, GTP binding, CYTO protein binding; HET: GSP; 1.95A {Homo sapiens} PDB: 3u7d_A
Probab=98.43 E-value=9.9e-08 Score=69.62 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=42.6
Q ss_pred eEEEEEEecCCCEEEEEecc--CccHhHHHHHHHhhcCCc--ccceeeEEEecCCCC
Q psy17656 22 IEVAHITLLDGSLLDVTIER--KAKGEDLFDRVCDHLNLL--ERDYFGLTYDNKYDP 74 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~~v~~--ka~G~~Ll~~Vc~~L~L~--E~dYFGL~y~d~~~~ 74 (85)
.+.|+|.++||+...++|+. .++|+++ |++|+|. +.+||||.+.++..+
T Consensus 5 ~~~i~V~l~dg~~~~~~i~~~~~tt~~el----~e~lgL~~~~~~~FaL~~~~~~~e 57 (322)
T 4dxa_B 5 FEKVRIYRMDGSYRSVELKHGNNTTVQQI----MEGMRLSQETQQYFTIWICSENLS 57 (322)
T ss_dssp CCEEEEECTTSCEEEEECTTGGGCCHHHH----HTTSSCCTTGGGGEEEEEECSSCE
T ss_pred ceEEEEEEECCcEEEEEEcCCCCCcHHHH----HHHhCcCccccCeeEEEEECCccc
Confidence 46899999999999999999 9999999 5678886 789999999986543
No 11
>4eku_A Protein-tyrosine kinase 2-beta; proline-rich tyrosine kinase 2, FERM domain, transferase; 3.25A {Homo sapiens}
Probab=98.23 E-value=2.8e-06 Score=64.27 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=55.2
Q ss_pred CCCeEEEEEEe------cCCCEEEEEeccCccHhHHHHHHH--hhcCC--cccceeeEEEec-CCCCeeccccCCC
Q psy17656 19 KGKIEVAHITL------LDGSLLDVTIERKAKGEDLFDRVC--DHLNL--LERDYFGLTYDN-KYDPQCWLEMVNY 83 (85)
Q Consensus 19 ~~~~~~~~V~L------LD~t~~~~~v~~ka~G~~Ll~~Vc--~~L~L--~E~dYFGL~y~d-~~~~~~WLd~~K~ 83 (85)
.......+|.. |||+...+.++..++.+++++.|| ..+|+ .+.+||||++.+ ..++.+||+++++
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~k~v~~d~~ttV~dVi~~i~~~~kiG~~i~~~~~FgL~~~~~~~~~~~wL~~~~~ 93 (392)
T 4eku_A 18 KEDVRILKVCFYSNSFNPGKNFKLVKCTVQTEIREIITSILLSGRIGPNIRLAECYGLRLKHMKSDEIHWLHPQMT 93 (392)
T ss_dssp GGGEEEEEEEECCSSSCGGGEEEEEEEETTCBHHHHHHHHHHTTTTCSSCCCGGGEEEEEEESSSCCEEEECTTSB
T ss_pred cceeeeEEEEecccccCCCCCeEEEEeCCCCcHHHHHHHHHHHhhcCCCcCccceEEEEEEECCCCceEECCCCCc
Confidence 34556777788 999999999999999999999999 56764 799999999975 5678899999875
No 12
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.75 E-value=0.00017 Score=47.53 Aligned_cols=51 Identities=16% Similarity=0.431 Sum_probs=43.5
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN 70 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d 70 (85)
++....+|.+|||+..++.|+...+-..+...||+.+||...+-|+|....
T Consensus 9 ~k~r~LkV~llDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~ 59 (128)
T 2kc2_A 9 SHMRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVREL 59 (128)
T ss_dssp SEEEEEEEECTTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEEC
T ss_pred cCCccEEEEcCCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccc
Confidence 355689999999999999999999988888899999999855547998754
No 13
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=96.07 E-value=0.048 Score=33.61 Aligned_cols=55 Identities=13% Similarity=0.117 Sum_probs=48.5
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCe
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQ 75 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~ 75 (85)
+..+.+++.+-++ .+.+.+++...=++|.+.|.+.+.+...+-|.+.|.|..|..
T Consensus 4 ~~~vkvK~~~~gd-i~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~DEeGD~ 58 (89)
T 1vd2_A 4 GSQVRVKAYYRGD-IMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWIDEEGDP 58 (89)
T ss_dssp SSCEEEEEESSSC-EEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEECCSSSCC
T ss_pred CCeEEEEEEeCCe-EEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEECCCCCc
Confidence 4568999999876 778999999999999999999999998999999999987643
No 14
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=96.03 E-value=0.0098 Score=36.98 Aligned_cols=49 Identities=8% Similarity=0.204 Sum_probs=42.3
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN 70 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d 70 (85)
.-+.+.|...++....+.|.+.+.=.++++.+|+++++ +.+-++|.|.+
T Consensus 8 ~~m~v~Vl~~n~rr~~VKvtp~t~L~~VL~eaC~K~gl-~~~~~~Lkh~~ 56 (90)
T 2al3_A 8 GGSAVSVLAPNGRRHTVKVTPSTVLLQVLEDTCRRQDF-NPSEYDLKFQR 56 (90)
T ss_dssp --CCEEEECTTSCEEEECCCTTSBHHHHHHHHHHHTTC-CGGGCEEEETT
T ss_pred CccEEEEEcCCCcEEEEEECCCCCHHHHHHHHHHHhCC-ChhhCeEEeCC
Confidence 34589999999999999999999999999999999999 56666999864
No 15
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=94.92 E-value=0.096 Score=32.89 Aligned_cols=49 Identities=18% Similarity=0.330 Sum_probs=42.9
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~ 67 (85)
..+...|+|...||+...+.|++..+++++.+..++..++.....+.|-
T Consensus 6 ~~~k~vvkvf~~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLv 54 (100)
T 1wgr_A 6 SGRPHVVKVYSEDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLV 54 (100)
T ss_dssp CCSCEEEEEEETTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEE
T ss_pred cCCCEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEE
Confidence 3455799999999999999999999999999999999998877666654
No 16
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=94.29 E-value=0.24 Score=28.58 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.....+.+.|..++|..+.+.+.+.++-.+|-.++++..++.
T Consensus 8 ~~~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 49 (88)
T 3dbh_I 8 GSGGSMLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 49 (88)
T ss_dssp SCCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCCCcEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 456779999999999999999999999999999999999875
No 17
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=94.06 E-value=0.28 Score=30.92 Aligned_cols=45 Identities=13% Similarity=0.209 Sum_probs=39.8
Q ss_pred CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
+...+..+.++|...++..+.|.|.+.++=+.|++..|+..++.-
T Consensus 20 ~~~~~~~I~IkVk~~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~ 64 (110)
T 2k8h_A 20 CKEETALVAVKVVNADGAEMFFRIKSRTALKKLIDTYCKKQGISR 64 (110)
T ss_dssp CCCCCCCEEEEEEETTSCCEEEEECTTSSHHHHHHHHHHHHTCCS
T ss_pred CCCCCCeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 344567799999999999999999999999999999999999853
No 18
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=94.03 E-value=0.22 Score=29.34 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=38.2
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+..+.+.|..++|..+.+.+.+.++-.+|-.++++..++.
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 54 (91)
T 3v6c_B 13 VPRGSMQIFVNTLTGTHITLEVEPSDTIENVKAKIQDKEGIP 54 (91)
T ss_dssp CCCCSEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCCCeEEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence 356779999999999999999999999999999999999874
No 19
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=94.00 E-value=0.33 Score=30.18 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=38.4
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
....+.++|...++..+.|.|.+.++=..|++..|++.++.-
T Consensus 21 ~~~~I~IkVk~~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~ 62 (104)
T 1wz0_A 21 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 62 (104)
T ss_dssp CSCCEEEEEECSSSCEEEEEECTTSCHHHHHHHHHHHHTCCT
T ss_pred CCCeEEEEEECCCCCEEEEEEcCCChHHHHHHHHHHHhCCCc
Confidence 456799999999999999999999999999999999999853
No 20
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=93.69 E-value=0.27 Score=28.80 Aligned_cols=43 Identities=7% Similarity=0.089 Sum_probs=38.1
Q ss_pred CCCeEEEEEEecCCC-EEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656 19 KGKIEVAHITLLDGS-LLDVTIERKAKGEDLFDRVCDHLNLLER 61 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t-~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~ 61 (85)
.+..+.++|...+|. .+.|.|.+.++=+.|++..|+..++.-.
T Consensus 4 ~~~~i~ikV~~~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~ 47 (79)
T 3a4r_A 4 GSQELRLRVQGKEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGH 47 (79)
T ss_dssp CCCCEEEEEECSSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTC
T ss_pred CCCEEEEEEEeCCCCEEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 446699999999996 8999999999999999999999998643
No 21
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=93.60 E-value=0.18 Score=30.82 Aligned_cols=45 Identities=13% Similarity=0.082 Sum_probs=37.3
Q ss_pred CCCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 15 TKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 15 ~~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
+.+..+..+.+.|..++|..+.+.|.+..+-.+|-.++++..++.
T Consensus 16 ~~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 60 (106)
T 1ttn_A 16 PPPNSGYECQLRLRLSTGKDLKLVVRSTDTVFHMKRRLHAAEGVE 60 (106)
T ss_dssp -----CCSEEEEEEETTTEEEEEEECTTSHHHHHHHHHHHTTCCC
T ss_pred CCCCCCCeEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHHCcC
Confidence 445677889999999999999999999999999999999998874
No 22
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=93.41 E-value=0.2 Score=28.67 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=35.1
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
+.++|...+|..+.|.|.+.++=+.|++..|+..++.-
T Consensus 2 i~lkV~~~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~ 39 (72)
T 1wm3_A 2 INLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 39 (72)
T ss_dssp EEEEEECTTSCEEEEEECTTSCTHHHHHHHHHHHTCCT
T ss_pred EEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 67899999999999999999999999999999999853
No 23
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=93.32 E-value=0.22 Score=29.95 Aligned_cols=43 Identities=12% Similarity=0.154 Sum_probs=37.4
Q ss_pred CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
...+..+.+.|..++|..+.+.|.+..+=..|.+.+++..++.
T Consensus 16 ~~~~~~m~I~Vk~~~g~~~~l~v~~~~tv~~lK~~i~~~~gip 58 (97)
T 1wyw_B 16 KKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 58 (97)
T ss_dssp ---CCEEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 3456779999999999999999999999999999999999984
No 24
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=93.15 E-value=0.34 Score=30.35 Aligned_cols=43 Identities=7% Similarity=-0.041 Sum_probs=38.6
Q ss_pred CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
....+..+.++|.. +|.++.|.|.+.++=+.|++..|+..++.
T Consensus 25 ~~~~~~~I~IkV~~-~g~~i~fkIk~tt~l~kL~~ay~ek~gi~ 67 (106)
T 2eke_C 25 EVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE 67 (106)
T ss_dssp CCCCCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCCCCeEEEEEec-CCcEEEEEeCCCCHHHHHHHHHHHHhCCC
Confidence 34466789999999 99999999999999999999999999985
No 25
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=92.91 E-value=0.3 Score=29.51 Aligned_cols=42 Identities=19% Similarity=0.276 Sum_probs=38.1
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
....+.++|...+|..+.|.|.+.++=+.|++..|++.++.-
T Consensus 14 ~~~~i~ikV~~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 55 (93)
T 2d07_B 14 NNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 55 (93)
T ss_dssp -CCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHHHTCCG
T ss_pred CCCeEEEEEECCCCCEEEEEEccCCHHHHHHHHHHHHhCCCc
Confidence 457899999999999999999999999999999999999853
No 26
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=92.87 E-value=0.24 Score=34.45 Aligned_cols=65 Identities=12% Similarity=0.119 Sum_probs=40.3
Q ss_pred ccccccccCCCCCCCC-CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 2 TMTEIDTESAPPKTKP-LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 2 ~~~~~~~~~~~~~~~~-~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
+-.|+.+++.+-++|. .++..+.++|. .+|.++.|.|.+.++=..|++..|++.|+.- .-+-+.|
T Consensus 8 ~~~~~~~~~~~~~kp~~~~~~~I~LkV~-~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~-~~~RF~F 73 (200)
T 3pge_A 8 SDSEVNQEAKPEVKPEVKPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM-DSLRFLY 73 (200)
T ss_dssp -----------------CCCCCEEEEEE-CSSCEEEEEECTTSCTHHHHHHHHHHHSSCG-GGEEEEE
T ss_pred chhhhccccccccCCCCCCCCeEEEEEe-cCCCEEEEEEecCCHHHHHHHHHHHHhCCCh-hhEEEEE
Confidence 3345666666655543 56788999997 4999999999999999999999999999843 3333444
No 27
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=92.84 E-value=0.32 Score=27.67 Aligned_cols=39 Identities=13% Similarity=0.184 Sum_probs=35.4
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.|..+++..+.+++.+.++-.+|-+++++..++.
T Consensus 2 s~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~ 40 (85)
T 3mtn_B 2 SHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 40 (85)
T ss_dssp -CEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 358899999999999999999999999999999999974
No 28
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=92.74 E-value=0.27 Score=29.86 Aligned_cols=41 Identities=20% Similarity=0.276 Sum_probs=37.0
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
+..+.++|..+++.++.|.|.+.++=+.|++..|++.++.-
T Consensus 5 ~~~i~ikVk~~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~ 45 (94)
T 2io1_B 5 NDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 45 (94)
T ss_dssp -CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCCG
T ss_pred CCeEEEEEECCCCCEEEEEECCCCHHHHHHHHHHHHhCCCc
Confidence 35689999999999999999999999999999999999853
No 29
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=92.73 E-value=0.3 Score=29.60 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=36.8
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
..+.++|...+|.++.|.|.+.++=+.|++..|+..++.-
T Consensus 4 ~~i~ikVk~~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~ 43 (91)
T 2io0_B 4 DHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSM 43 (91)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHTTCCS
T ss_pred CeEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHhCCCc
Confidence 4689999999999999999999999999999999999854
No 30
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=92.25 E-value=0.24 Score=37.04 Aligned_cols=58 Identities=9% Similarity=0.021 Sum_probs=43.8
Q ss_pred CeEEEEEEecCCCEE-------------EEEeccCccHhHHHHHHHhhcCCcc-cceeeEEEecCCCCeeccccC
Q psy17656 21 KIEVAHITLLDGSLL-------------DVTIERKAKGEDLFDRVCDHLNLLE-RDYFGLTYDNKYDPQCWLEMV 81 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~-------------~~~v~~ka~G~~Ll~~Vc~~L~L~E-~dYFGL~y~d~~~~~~WLd~~ 81 (85)
-.+.|+|+.|||+.. .+.++.+..=...+..||+++++.. .+.+-|||.+.. .|||++
T Consensus 14 ~~~~~~vq~l~d~dpf~~~~~~ep~r~~l~~fd~~~pL~~~i~~v~~~~~~p~~~e~yaLQ~~~~~---~Yl~~~ 85 (339)
T 3dad_A 14 SVVTVRVQYLEDTDPFASANFPEPRRAPTCSLDGALPLGAQIPAVHRLLGAPLKLEDSALQVSPSG---YYLDTE 85 (339)
T ss_dssp CEEEEEEEECCCSSTTSCCCCCSSSSCCEEEEETTSCGGGTHHHHHHHHTCSSCSSSEEEEETTTC---CBCCTT
T ss_pred ceeEEEEEeecCCCccccCCCCCCCCCCceeccCcCCHHHHHHHHHHhccCCCcccceeeeecCCC---Ceeccc
Confidence 468999999999862 2334555555667789999999998 789999997643 477743
No 31
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=91.99 E-value=0.57 Score=27.24 Aligned_cols=39 Identities=5% Similarity=0.101 Sum_probs=36.1
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..|.+.|..++|..+.++|.+..+-.+|-.++++..++.
T Consensus 4 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 42 (90)
T 4dwf_A 4 DSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP 42 (90)
T ss_dssp CEEEEEEEETTCCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred cEEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 568999999999999999999999999999999999874
No 32
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=91.93 E-value=0.36 Score=30.84 Aligned_cols=42 Identities=12% Similarity=0.162 Sum_probs=36.9
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+..+.++|.-.|+.++.|.|.+.++=+.|++..|++.++.
T Consensus 36 ~~~~~I~LKV~~qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~ 77 (115)
T 3kyd_D 36 KEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 77 (115)
T ss_dssp ---CEEEEEEECTTSCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred CCCCeEEEEEEcCCCCEEEEEEccCChHHHHHHHHHHHhCCC
Confidence 346789999999999999999999999999999999999974
No 33
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=91.90 E-value=0.35 Score=26.77 Aligned_cols=45 Identities=22% Similarity=0.315 Sum_probs=36.9
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
|.+.|..++|..+.+++.+.++-.+|-+.+++..++. .+..-|.|
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~~ 45 (76)
T 1ndd_A 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP-PQQQRLIY 45 (76)
T ss_dssp CEEEEECTTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred CEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEEE
Confidence 4678899999999999999999999999999999875 33344444
No 34
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=91.77 E-value=0.4 Score=26.54 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=37.2
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
|.+.|..++|..+.+++++.++-.+|-+.+++..++. .+..-|.|
T Consensus 1 M~i~vk~~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~-~~~q~L~~ 45 (76)
T 3a9j_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF 45 (76)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred CEEEEEcCCCCEEEEEECCCCcHHHHHHHHHHHHCcC-HHHeEEEE
Confidence 4678899999999999999999999999999999875 33444555
No 35
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=91.60 E-value=0.49 Score=34.32 Aligned_cols=46 Identities=15% Similarity=0.162 Sum_probs=40.3
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeE
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGL 66 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL 66 (85)
+.+.|+|.+.||+...+.|++..++.+|.+..+...++...+...|
T Consensus 30 ~k~ivkv~~~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~~~W~L 75 (281)
T 4gmv_A 30 KKLVIRVHMSDDSSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSL 75 (281)
T ss_dssp CEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHSCCCCCTTCEE
T ss_pred ccEEEEEEecCCCEEEEEECCCCcHHHHHHHHHHhcCCCCCCCeEE
Confidence 5689999999999999999999999999999998888876665544
No 36
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=91.59 E-value=0.38 Score=28.84 Aligned_cols=44 Identities=11% Similarity=0.222 Sum_probs=35.9
Q ss_pred CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
+...+..+.+.|..++|..+.+.|.+.++-.+|-.++++..++.
T Consensus 16 ~~~~~~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 59 (98)
T 4hcn_B 16 LYFQGRPMQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 59 (98)
T ss_dssp ------CCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CCCCCCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 44567789999999999999999999999999999999999974
No 37
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=91.56 E-value=0.78 Score=25.79 Aligned_cols=39 Identities=15% Similarity=0.119 Sum_probs=35.6
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.|..++|..+.+++.+.++-.+|-+++.+..++.
T Consensus 6 ~~m~i~vk~~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~ 44 (81)
T 2dzi_A 6 SGMQLTVKALQGRECSLQVPEDELVSTLKQLVSEKLNVP 44 (81)
T ss_dssp SSEEEEEEETTSCEEEEEECSSCBHHHHHHHHHHHTCCC
T ss_pred CcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 568999999999999999999999999999999999874
No 38
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=91.56 E-value=0.29 Score=27.93 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=34.9
Q ss_pred eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
.+.+.|..+++..+.+++.+.++-.+|-+++++..++..
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~ 41 (85)
T 3n3k_B 3 HMRIVVKTLMGRTIILEVEPSDTIENVKAKIQDKEGIPP 41 (85)
T ss_dssp -CEEEEECGGGCEEEEECCTTCBHHHHHHHHHHHHCCCG
T ss_pred eEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCCH
Confidence 478899999999999999999999999999999998743
No 39
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=91.44 E-value=0.55 Score=26.56 Aligned_cols=38 Identities=11% Similarity=0.119 Sum_probs=35.2
Q ss_pred eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.+.+.|..++|..+.+.|.+..+=.+|.+.+++..++.
T Consensus 3 ~m~i~vk~~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~ 40 (79)
T 2uyz_B 3 YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGVP 40 (79)
T ss_dssp EEEEEEECTTCCEEEEEEETTSCTHHHHHHHHHHHTCC
T ss_pred eEEEEEECCCCCEEEEEECCCChHHHHHHHHHHHHCCC
Confidence 47899999999999999999999999999999999975
No 40
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=91.25 E-value=0.75 Score=26.40 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=39.1
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
..+.+.|..+++..+.+++++.++-.+|-.++++..++. .+..-|.|
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~-~~~qrL~~ 52 (87)
T 1wh3_A 6 SGIQVFVKNPDGGSYAYAINPNSFILGLKQQIEDQQGLP-KKQQQLEF 52 (87)
T ss_dssp SSEEEEEEETTTEEEEEEECSSSBHHHHHHHHHHHTCCC-TTTEEEEE
T ss_pred CCEEEEEEcCCCCEEEEEeCCCChHHHHHHHHHHHhCCC-hHHEEEEE
Confidence 468999999999999999999999999999999999864 33334444
No 41
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=91.22 E-value=0.7 Score=26.13 Aligned_cols=39 Identities=8% Similarity=-0.070 Sum_probs=35.9
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.|..++|..+.+++++.++-.+|-.++.+..++.
T Consensus 3 ~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 41 (79)
T 3phx_B 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (79)
T ss_dssp CCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred CCEEEEEEeCCCCEEEEEECCcChHHHHHHHHHhhcCCC
Confidence 358899999999999999999999999999999999875
No 42
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=90.94 E-value=1.5 Score=27.15 Aligned_cols=50 Identities=18% Similarity=0.137 Sum_probs=39.6
Q ss_pred CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656 17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67 (85)
Q Consensus 17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~ 67 (85)
........++|+|+||+.+.-.+....+=++|++-|-.+.+.. ..-|-|.
T Consensus 8 ~~~~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~-~~~f~L~ 57 (109)
T 2dzk_A 8 RDRSTIARIQFRLPDGSSFTNQFPSDAPLEEARQFAAQTVGNT-YGNFSLA 57 (109)
T ss_dssp CCCSCCEEEEEECSSSCEEEEEECTTSBHHHHHHHHHHHHTTS-SCSCEEE
T ss_pred CCCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhccCCC-CCceEEE
Confidence 3455678999999999999999999999999999999887532 2345554
No 43
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=90.70 E-value=0.91 Score=26.22 Aligned_cols=42 Identities=5% Similarity=0.069 Sum_probs=37.1
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+..+.+.|..++|..+.+++++..+-.+|-.++++..++.
T Consensus 13 ~~~~~m~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 54 (88)
T 4eew_A 13 EEPDSLEVLVKTLDSQTRTFIVGAQMNVKEFKEHIAASVSIP 54 (88)
T ss_dssp --CCEEEEEEEETTSCEEEEEEETTCBHHHHHHHHHHHHTCC
T ss_pred cCCCeEEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 455679999999999999999999999999999999999874
No 44
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=90.34 E-value=0.6 Score=27.39 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=34.2
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.+++.+.++-.+|-..+++..++.
T Consensus 2 m~i~vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~gip 38 (96)
T 3k9o_B 2 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 38 (96)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred cEEEEEeCCCCEEEEEECCCCCHHHHHHHHHhhhCCC
Confidence 5788999999999999999999999999999999874
No 45
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=90.04 E-value=0.68 Score=27.48 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=33.6
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.+++++.++-.+|-.++++..++.
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~ 37 (98)
T 1yx5_B 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (98)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHTCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4678999999999999999999999999999999874
No 46
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=89.45 E-value=1.5 Score=27.60 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=48.1
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccC
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMV 81 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~ 81 (85)
+...+.|+|...|.+..++.+...+.+++++..|.+.++..|.+ .=|.=....|++.=|.|+
T Consensus 6 ~sD~i~~~Vy~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~-l~Lv~v~ssGEk~~lqp~ 67 (104)
T 1wgy_A 6 SGEEIFCHVYITEHSYVSVKAKVSSIAQEILKVVAEKIQYAEED-LALVAITFSGEKHELQPN 67 (104)
T ss_dssp CSSCCCEEEECSSSCEEEECCCTTCBSHHHHHHHHHHHTSCGGG-EEEEEECSSCCCCBCCTT
T ss_pred CCCceEEEEEeccCceEEEEEeccchHHHHHHHHHHHhcCCccc-eEEEEEccCCcEeecCCc
Confidence 34567899999999999999999999999999999999986654 234444556666655554
No 47
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=89.42 E-value=2.1 Score=25.12 Aligned_cols=40 Identities=5% Similarity=0.038 Sum_probs=36.0
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
....+.+.|..+ +..+.+++.+..+-.+|-+++++..++.
T Consensus 14 ~~~~m~i~Vk~~-g~~~~~~v~~~~TV~~LK~~I~~~~gip 53 (96)
T 1wx8_A 14 SSRIIRVSVKTP-QDCHEFFLAENSNVRRFKKQISKYLHCN 53 (96)
T ss_dssp CSCEEEEEEECS-SSEEEEEEETTCCHHHHHHHHHHHTCSC
T ss_pred CCCcEEEEEEEC-CeEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 457799999999 8899999999999999999999999874
No 48
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=89.36 E-value=1.2 Score=27.83 Aligned_cols=53 Identities=9% Similarity=0.154 Sum_probs=42.2
Q ss_pred eEEEEEEecCC-------CEEEEEeccCccHhHHHHHHHhhcCCccc----ceeeEEEecCCCC
Q psy17656 22 IEVAHITLLDG-------SLLDVTIERKAKGEDLFDRVCDHLNLLER----DYFGLTYDNKYDP 74 (85)
Q Consensus 22 ~~~~~V~LLD~-------t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~----dYFGL~y~d~~~~ 74 (85)
.+.++|+.-++ -...+.|.+...=++|.+.+.+.+++... .-+.|+|.|.+|-
T Consensus 5 sikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~~~i~~~~klkYkDEdGD 68 (98)
T 1q1o_A 5 SILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGD 68 (98)
T ss_dssp CEEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCSSCCCCCCCEEEECSSSC
T ss_pred cEEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCccccccceeEEEEEcCCCC
Confidence 37888887642 25778899999999999999999998633 3389999998764
No 49
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=89.23 E-value=1.5 Score=25.47 Aligned_cols=39 Identities=8% Similarity=-0.070 Sum_probs=35.5
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.|..++|..+.+++++.++-.+|-.++++..++.
T Consensus 3 ~~m~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~gip 41 (88)
T 2hj8_A 3 EPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 41 (88)
T ss_dssp CEEEEEEEETTSCEEEEEEESSSBHHHHHHHHHHHTCSC
T ss_pred ccEEEEEECCCCCEEEEEECCCCcHHHHHHHHHHHhCCC
Confidence 358899999999999999999999999999999998874
No 50
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=88.96 E-value=0.91 Score=26.56 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=33.7
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.+++++.++-.+|-.++.+..++.
T Consensus 1 M~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 37 (88)
T 4fbj_B 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKEGIP 37 (88)
T ss_dssp CEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEcCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 4678999999999999999999999999999999874
No 51
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=88.73 E-value=1 Score=29.35 Aligned_cols=44 Identities=14% Similarity=0.187 Sum_probs=36.5
Q ss_pred CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
+.-....|.+.|..++|..+.++|++.++-.+|-.++++..++.
T Consensus 14 ~~~~~~~m~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 57 (172)
T 3u30_A 14 LVPRGSHMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 57 (172)
T ss_dssp -----CCEEEEEEETTTEEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCCCCCcEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 33456779999999999999999999999999999999999874
No 52
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=88.22 E-value=1.8 Score=25.24 Aligned_cols=49 Identities=8% Similarity=0.014 Sum_probs=40.5
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
.+..|.+.|..+.|..+++++++.++-.+|-.++.+..++. .+..-|.|
T Consensus 7 ~~~~~~i~vk~l~g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~ 55 (84)
T 2kk8_A 7 HHSHMKFLVENLNGSSFELEVDYRDTLLVVKQKIERSQHIP-VSKQTLIV 55 (84)
T ss_dssp CCCCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred ccCceEEEEEecCCcEEEEEECCCChHHHHHHHHHHHHCcC-hHHEEEEE
Confidence 35678999999999999999999999999999999999974 33334444
No 53
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=88.16 E-value=1.4 Score=24.69 Aligned_cols=46 Identities=20% Similarity=0.252 Sum_probs=37.3
Q ss_pred eEEEEEEecCCCEE-EEE-eccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 22 IEVAHITLLDGSLL-DVT-IERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 22 ~~~~~V~LLD~t~~-~~~-v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
.+.+.|..++|..+ .++ +++.++-.+|-.++++..++. .+..-|.|
T Consensus 2 ~m~i~Vk~~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip-~~~qrL~~ 49 (78)
T 2faz_A 2 SMWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVE-PGLQRLFY 49 (78)
T ss_dssp CEEEEEEETTSSCEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred cEEEEEEECCCCEEEEEeccCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 47889999999885 898 999999999999999999874 33334444
No 54
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=88.00 E-value=1.9 Score=26.44 Aligned_cols=41 Identities=12% Similarity=0.143 Sum_probs=37.2
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
....+.+.|..++|..+.+.+.+.++-.+|-.++++..++.
T Consensus 32 ~~~~m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 3vdz_A 32 ELLAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp GGGCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCccEEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCCC
Confidence 34569999999999999999999999999999999999875
No 55
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=87.97 E-value=1.1 Score=26.14 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=34.5
Q ss_pred eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
-|.+.|..++|..+.+++++.++-.+|-+++++..++.
T Consensus 9 ~~~i~v~~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 46 (88)
T 1sif_A 9 GLQLFIKTLTGKTFTVEMEPSDTIENLKAKIQDKEGIP 46 (88)
T ss_dssp -CEEEEEETTSCEEEEECCTTSBHHHHHHHHHHHHCCC
T ss_pred ceEEEEEeCCCCEEEEEECCCChHHHHHHHHHHHHCcC
Confidence 47889999999999999999999999999999999874
No 56
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=87.88 E-value=2.3 Score=26.11 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=39.3
Q ss_pred CCCCCeEEEEEEecCCC-EEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656 17 PLKGKIEVAHITLLDGS-LLDVTIERKAKGEDLFDRVCDHLNLLER 61 (85)
Q Consensus 17 ~~~~~~~~~~V~LLD~t-~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~ 61 (85)
...+..+.++|.--|+. .+.|.|.+.++=+.|++.-|+..++...
T Consensus 20 ~~~~~~I~LkV~~~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~ 65 (97)
T 2jxx_A 20 TETSQQLQLRVQGKEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGR 65 (97)
T ss_dssp CCSCSEEEEEEEESSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSS
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEECCCChHHHHHHHHHHHHCCCcc
Confidence 45668899999999995 8999999999999999999999998543
No 57
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=87.77 E-value=1.2 Score=30.51 Aligned_cols=53 Identities=9% Similarity=-0.019 Sum_probs=38.6
Q ss_pred cCCCCCCCCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccc
Q psy17656 9 ESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERD 62 (85)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~d 62 (85)
++.-+|+...+...+.++|.- +++++.|.|.+.++=+-|++.-|++.++.-..
T Consensus 8 ~~~~~~~~~~~~~~i~ikv~~-~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~ 60 (209)
T 3uf8_A 8 HSGEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDS 60 (209)
T ss_dssp ----------CCSEEEEEEEC-SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGG
T ss_pred cCCcccceeCCCCcEEEEEEc-CCCEEEEEEeeCCHHHHHHHHHHHhhCCChhe
Confidence 445555566788899999987 88899999999999999999999999985443
No 58
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=87.39 E-value=1.9 Score=31.37 Aligned_cols=61 Identities=15% Similarity=0.142 Sum_probs=50.9
Q ss_pred eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcC---CcccceeeEEEecCC-CCeeccccCCC
Q psy17656 22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLN---LLERDYFGLTYDNKY-DPQCWLEMVNY 83 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~---L~E~dYFGL~y~d~~-~~~~WLd~~K~ 83 (85)
.++.+|++. +++..+.++++++-.+....|.+.++ ..+.+-+||--.+.+ ....||+..+.
T Consensus 3 ~~~~~~~~~-~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~~~ 67 (371)
T 3ivf_A 3 ALSLKISIG-NVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAGKA 67 (371)
T ss_dssp CEEEEEEET-TEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTTSB
T ss_pred cEEEEEEec-ceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCCCC
Confidence 367788888 88899999999999999999999997 457788899998763 45699998874
No 59
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=87.31 E-value=2.6 Score=25.34 Aligned_cols=51 Identities=8% Similarity=0.095 Sum_probs=41.1
Q ss_pred CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
++.....+.+.|..++++ +.+++++.++-.+|-+++.+..++. .+..-|.|
T Consensus 16 ~~~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip-~~~QrLi~ 66 (100)
T 1yqb_A 16 PRGSPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH-PDQLVLIF 66 (100)
T ss_dssp CSCCTTEEEEEEECSSCE-EEEEEETTCBHHHHHHHHHHHHTCC-GGGEEEEE
T ss_pred CCCCCCeEEEEEEcCCCc-EEEEECCCCcHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 455678899999999996 6899999999999999999999874 33334444
No 60
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=87.10 E-value=2.5 Score=24.21 Aligned_cols=47 Identities=23% Similarity=0.303 Sum_probs=38.1
Q ss_pred CeEEEEEEecCC-CEEEE-EeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 21 KIEVAHITLLDG-SLLDV-TIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 21 ~~~~~~V~LLD~-t~~~~-~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
..+.+.|..++| ..+.+ .+.+.++-.+|-..+++..++. .+..-|.|
T Consensus 6 ~~m~i~Vk~~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip-~~~qrL~~ 54 (89)
T 1wy8_A 6 SGMWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVR-PECQRLFY 54 (89)
T ss_dssp SCEEEEEEETTCSCEEEEEEECTTCBHHHHHHHHHHHSCCC-TTTEEEEE
T ss_pred CcEEEEEEECCCCceEEEEecCCCCCHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 568999999999 78999 5999999999999999998874 33334444
No 61
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=86.83 E-value=1.9 Score=26.26 Aligned_cols=39 Identities=13% Similarity=0.177 Sum_probs=35.9
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.|..+++..+.+++.+.++-.+|-.++++..++.
T Consensus 34 ~~m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (111)
T 2ojr_A 34 LAMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 72 (111)
T ss_dssp SCEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CeEEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 469999999999999999999999999999999999874
No 62
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=86.49 E-value=1.2 Score=27.73 Aligned_cols=40 Identities=18% Similarity=0.207 Sum_probs=36.0
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
+..|.+.|..++|+.++++|++.++-.+|-..|-+..++.
T Consensus 5 ~~~M~I~Vk~l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~ 44 (105)
T 1v2y_A 5 SSGMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLK 44 (105)
T ss_dssp CCSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEEecCCCEEEEEECCCChHHHHHHHHHHHhCCC
Confidence 3459999999999999999999999999999999888764
No 63
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=86.31 E-value=1.6 Score=26.92 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=37.5
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.+..+.+.|..++|..+.+++++.++-.+|-.++.+..++.
T Consensus 6 ~~~~~~i~vk~l~G~~~~l~v~~~~TV~~LK~~I~~~~gip 46 (114)
T 2kdi_A 6 HHGEFQIFAKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 46 (114)
T ss_dssp CCCCCEEEEEETTCCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred cCCcEEEEEEeCCCcEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 45778999999999999999999999999999999999874
No 64
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=86.24 E-value=2.8 Score=23.66 Aligned_cols=36 Identities=8% Similarity=0.091 Sum_probs=32.9
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHL 56 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L 56 (85)
..+.+.|..++|..+.+++++.++-.+|-.++.+.+
T Consensus 4 ~~m~i~vk~~~g~~~~~~v~~~~TV~~lK~~i~~~~ 39 (85)
T 2wyq_A 4 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEK 39 (85)
T ss_dssp CCEEEEEEETTSCEEEEEECTTSBHHHHHHHHHHHH
T ss_pred ceEEEEEEECCCCEEEEEECCCCCHHHHHHHHHhhc
Confidence 458899999999999999999999999999999983
No 65
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=85.61 E-value=1.8 Score=30.79 Aligned_cols=47 Identities=15% Similarity=0.127 Sum_probs=34.8
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~ 67 (85)
....|+|.+-||+..++.|++..++.+|.+.+...-+..+.++.-|-
T Consensus 7 ~~~ivkv~~~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~ 53 (256)
T 3hk0_A 7 AKQDVKVFSEDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLV 53 (256)
T ss_dssp -CEEEEEEETTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEE
T ss_pred CceEEEEEecCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEE
Confidence 44689999999999999999999999999999987777766665553
No 66
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=84.92 E-value=4.6 Score=24.29 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=39.3
Q ss_pred eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC
Q psy17656 22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK 71 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~ 71 (85)
.+.++|+.-+ .+.+.+.+.+.=++|.++|++.|.+. .+--=|.|.+.
T Consensus 5 ~~~VKV~~~~--tvairvp~~~~y~~L~~~l~~kL~l~-~~~~~LsYk~~ 51 (83)
T 1oey_A 5 AYTLKVHYKY--TVVMKTQPGLPYSQVRDMVSKKLELR-LEHTKLSYRPR 51 (83)
T ss_dssp CEEEEEESSS--EEEEEECTTCCHHHHHHHHHHHTTCC-GGGCCEEECCT
T ss_pred cEEEEEEEEE--EEEEECCCCCCHHHHHHHHHHHhCCC-cceeEEEeeCC
Confidence 4788898873 78889999999999999999999996 34457889885
No 67
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=84.02 E-value=3.2 Score=22.85 Aligned_cols=44 Identities=11% Similarity=0.068 Sum_probs=35.8
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
+.+.|.. +|..+.+.+.+.++-.+|-.++.+..++. .+..-|.|
T Consensus 5 m~i~vk~-~g~~~~~~v~~~~tV~~LK~~i~~~~~i~-~~~qrL~~ 48 (77)
T 2bwf_A 5 LNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP-VANQRLIY 48 (77)
T ss_dssp EEEEEEE-TTEEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred EEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHhCCC-HHHEEEEE
Confidence 6778888 88899999999999999999999999874 33344444
No 68
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=83.88 E-value=5.7 Score=24.55 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=37.3
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER 61 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~ 61 (85)
.....+.++|. -+|.+..|.|.+.++=+.|++.-|++.|+.-.
T Consensus 17 ~~~~~IniKV~-~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~ 59 (95)
T 2l76_A 17 ETPRLFPLKIR-CRADLVRLPLRMSEPLQSVVDHMATHLGVSPS 59 (95)
T ss_dssp SCCCCEEEEEE-CSSSEEEEEECSSSCTHHHHHHHHHHHTSCGG
T ss_pred CCCCeEEEEEE-cCCcEEEEEEecCChHHHHHHHHHhhcCCChh
Confidence 45566999999 48999999999999999999999999998543
No 69
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=83.50 E-value=5.9 Score=24.46 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=39.4
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
...+.+.|..++|..+.+++.+.++-.+|-.++++..++. .+-.-|.|
T Consensus 74 ~~~~~i~Vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~-~~~qrL~~ 121 (152)
T 3b08_A 74 RGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP-PDQQRLIF 121 (152)
T ss_dssp TTCEEEEEEESSSCEEEEEECTTCBHHHHHHHHHHHHCCC-GGGEEEEE
T ss_pred ccccceeeeecCCCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhhEEEEE
Confidence 3457888999999999999999999999999999998875 33344555
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=82.39 E-value=2.6 Score=26.19 Aligned_cols=37 Identities=14% Similarity=0.213 Sum_probs=33.6
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.+++++.++-.+|-..+++..++.
T Consensus 1 M~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~gip 37 (152)
T 3b08_A 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 37 (152)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 4678889999999999999999999999999999975
No 71
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=81.89 E-value=6.3 Score=23.58 Aligned_cols=49 Identities=8% Similarity=0.131 Sum_probs=38.9
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
.....+.+.|..++++ +.+++.+..+-.+|-.++.+..++. .+..-|.|
T Consensus 13 ~~~~~m~I~Vk~~~g~-~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~ 61 (106)
T 1wx7_A 13 QDPHLIKVTVKTPKDK-EDFSVTDTCTIQQLKEEISQRFKAH-PDQLVLIF 61 (106)
T ss_dssp CCSSEEEEEEECSSCE-EEEEEETTCCHHHHHHHHHHHHTCC-TTTEEEEE
T ss_pred CCCceEEEEEEeCCCc-EEEEECCCCcHHHHHHHHHHHHCcC-hhhEEEEE
Confidence 3567899999999985 6899999999999999999999874 33334444
No 72
>2dhz_A RAP guanine nucleotide exchange factor (GEF)- like 1; LINK guanine nucleotide exchange factor II, LINK-gefii, RA domain, structural genomics; NMR {Homo sapiens}
Probab=81.87 E-value=5.2 Score=25.69 Aligned_cols=61 Identities=16% Similarity=0.165 Sum_probs=47.7
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc-----ceeeEEEecCCCCeeccccC
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER-----DYFGLTYDNKYDPQCWLEMV 81 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~-----dYFGL~y~d~~~~~~WLd~~ 81 (85)
..+.|+|-..|.+.+++.+...+.+++++..|.+.++..|. +-.=|.=....|++.=|.|+
T Consensus 8 Dei~~~VY~~Dhsy~tvr~~v~~sa~eIl~~va~kl~~~e~~~~~~~~l~Lv~V~ssGEk~vlqp~ 73 (120)
T 2dhz_A 8 DEIFCRVYMPDHSYVTIRSRLSASVQDILGSVTEKLQYSEEPAGREDSLILVAVSSSGEKVLLQPT 73 (120)
T ss_dssp CCEEECEECTTSCCCCEEECTTCCHHHHHHHHHHHSTTCSSTTSCCSCCEEEEEETTCCCEECCTT
T ss_pred CcEEEEEEeccCceEEEEEeccccHHHHHHHHHHHhccccccccccCceEEEEEccCCcEeecCCc
Confidence 56889999999999999999999999999999999998664 12344444556666655544
No 73
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=81.68 E-value=2.1 Score=25.99 Aligned_cols=37 Identities=3% Similarity=-0.021 Sum_probs=33.3
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.++|++..+-.+|-.++.+..++.
T Consensus 2 m~I~Vk~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 38 (106)
T 3m62_B 2 VSLTFKNFKKEKVPLDLEPSNTILETKTKLAQSISCE 38 (106)
T ss_dssp -CEEEECTTCCEEEECCCTTSBHHHHHHHHHHTTTSC
T ss_pred EEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCCC
Confidence 5788999999999999999999999999999999874
No 74
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=81.36 E-value=4.5 Score=27.68 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=39.1
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeE
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGL 66 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL 66 (85)
+-+.|+|...||+...+.|++..+..++.+.++...++.......|
T Consensus 33 ~k~~v~v~~~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~~~~l 78 (291)
T 3tca_A 33 KKLVVKVHMDDSSTKSLMVDERQLARDVLDNLFEKTHCDCNVDWCL 78 (291)
T ss_dssp CEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCTTEEE
T ss_pred cceEEEEEcCCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCCCeEE
Confidence 4478999999999999999999999999999999988865544444
No 75
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=81.02 E-value=1.4 Score=25.59 Aligned_cols=45 Identities=7% Similarity=0.067 Sum_probs=35.6
Q ss_pred EEEEEEecCCCEEEEE-eccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656 23 EVAHITLLDGSLLDVT-IERKAKGEDLFDRVCDHLNLLERDYFGLTYD 69 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~-v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~ 69 (85)
|.++|..++|+.. +. +++.++-.+|...|.+..++. .+.+.|.|-
T Consensus 1 m~i~vr~~~G~~~-v~~l~~~~Tv~~Lk~~I~~~~gi~-~~~qrL~~~ 46 (86)
T 2kzr_A 1 WRVRCKAKGGTHL-LQGLSSRTRLRELQGQIAAITGIA-PGSQRILVG 46 (86)
T ss_dssp CCEEEEETTEEEE-ECSCCTTCBHHHHHHHHHHHTCCC-TTTCCCEES
T ss_pred CEEEEEcCCCCEE-eeecCCCCCHHHHHHHHHHHhCCC-ccceEEEeC
Confidence 4578999999654 77 999999999999999999864 345566663
No 76
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=80.27 E-value=4.5 Score=27.53 Aligned_cols=41 Identities=12% Similarity=0.141 Sum_probs=36.9
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.+-.|.+.|..++|..+.++|++..+-.+|-.++++..++.
T Consensus 102 d~~eMqI~VKtl~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp 142 (189)
T 3q3f_A 102 DHYGGQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 142 (189)
T ss_dssp CCCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred cccceeeeeecCCCCEEEEEeCCCCcHHHHHHHHHhccCCC
Confidence 44558899999999999999999999999999999998874
No 77
>2bye_A Phospholipase C, epsilon 1; RAS association domain, ubiquitin superfold; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=79.75 E-value=3.1 Score=26.50 Aligned_cols=52 Identities=13% Similarity=0.132 Sum_probs=40.3
Q ss_pred CCCCCeEEEEEEec--CCCEEEEEeccCccHhHHHHHHHhhcCCc---ccceeeEEE
Q psy17656 17 PLKGKIEVAHITLL--DGSLLDVTIERKAKGEDLFDRVCDHLNLL---ERDYFGLTY 68 (85)
Q Consensus 17 ~~~~~~~~~~V~LL--D~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~---E~dYFGL~y 68 (85)
++.+..+.|+|+-. |..-..|.+...+++++|+.+|....+.. ..+||=.+=
T Consensus 4 ~~~~~tf~v~V~gv~~~ePftI~~~~~~STAkdvl~qaL~ka~~~~~~~~~YvL~EE 60 (110)
T 2bye_A 4 RKCLQTHRVTVHGVPGPEPFTVFTINGGTKAKQLLQQILTNEQDIKPVTTDYFLMEE 60 (110)
T ss_dssp SSCCCCCEEEESSCSSSSSSEEEECCTTCCHHHHHHHHHCCSSSSCCCCCSEEEEEE
T ss_pred cccCcEEEEEEcCCCCCCCcEEEEecCCCcHHHHHHHHHHHhcCCCCCcccEEEEEE
Confidence 35677788888844 44456789999999999999999988874 567876554
No 78
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=79.13 E-value=4.5 Score=28.35 Aligned_cols=42 Identities=7% Similarity=-0.054 Sum_probs=36.3
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
.....+.++|. .||.++.|.|.+.++=+.|++..|++.++.-
T Consensus 53 dp~e~InLKVk-~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~ 94 (207)
T 3tix_A 53 KPETHINLKVS-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEM 94 (207)
T ss_dssp --CCEEEEEEE-CSSCEEEEEEETTSCTHHHHHHHHHHTTCCG
T ss_pred CCCCcEEEEEe-cCCCEEEEEEccCChHHHHHHHHHHHhCCCc
Confidence 45678999997 5999999999999999999999999999754
No 79
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=79.08 E-value=7.7 Score=22.88 Aligned_cols=40 Identities=15% Similarity=0.191 Sum_probs=34.2
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
....+.+.|. ..+..+.+++++.++-.+|-.++.+..++.
T Consensus 14 ~~~~~~i~Vk-~~g~~~~i~v~~~~TV~~LK~~I~~~tgip 53 (95)
T 1v86_A 14 GKELVDLKII-WNKTKHDVKVPLDSTGSELKQKIHSITGLP 53 (95)
T ss_dssp CCCCEEEEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCSC
T ss_pred CCceEEEEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4466888998 468889999999999999999999998863
No 80
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=78.93 E-value=8.9 Score=23.54 Aligned_cols=51 Identities=12% Similarity=0.221 Sum_probs=41.8
Q ss_pred CCCCeEEEEEEecC----CCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEe
Q psy17656 18 LKGKIEVAHITLLD----GSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYD 69 (85)
Q Consensus 18 ~~~~~~~~~V~LLD----~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~ 69 (85)
+......+.|.+.+ +..++++|++..+..+|-..|.+..++ ..+..=|-|.
T Consensus 11 ~~tg~ati~V~~~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gi-p~~qQrLI~~ 65 (100)
T 1wju_A 11 RTTGIATIEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGL-QENYIKIVIN 65 (100)
T ss_dssp SCCCEEEEEEECCTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTC-CSTTCEEEET
T ss_pred hhcceEEEEEEecCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCc-CHHHeEEEeC
Confidence 34567789999999 778999999999999999999999997 4555555554
No 81
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=78.67 E-value=5 Score=24.30 Aligned_cols=40 Identities=10% Similarity=0.297 Sum_probs=35.8
Q ss_pred CCeEEEEEEec---CCCEEEEEecc-CccHhHHHHHHHhhcCCc
Q psy17656 20 GKIEVAHITLL---DGSLLDVTIER-KAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 20 ~~~~~~~V~LL---D~t~~~~~v~~-ka~G~~Ll~~Vc~~L~L~ 59 (85)
...+.+.|..+ +|..+.+++.+ .++-.+|-.++.+..++.
T Consensus 25 ~~~i~i~Vk~~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip 68 (111)
T 1we6_A 25 PGPATIRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIP 68 (111)
T ss_dssp CSCEEEEECCTTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCC
T ss_pred CCcEEEEEEecccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCC
Confidence 45699999999 88899999998 999999999999998874
No 82
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=78.12 E-value=7.8 Score=24.48 Aligned_cols=49 Identities=18% Similarity=0.120 Sum_probs=39.0
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
.....++|+|+||+.+.-.+....+=++|++-|..++.-.+...|-|.-
T Consensus 50 ~~~t~IqIRlpdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t 98 (127)
T 1s3s_G 50 EPTTNIQIRLADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMT 98 (127)
T ss_dssp SCCCCEEEEETTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEec
Confidence 3457899999999999999999999999999998876423345566643
No 83
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=78.08 E-value=10 Score=23.84 Aligned_cols=48 Identities=21% Similarity=0.247 Sum_probs=37.2
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~ 67 (85)
.......++|+|+||+.+.-.+....+=++|++-|-.+ +. ...-|-|.
T Consensus 39 ~~~~~t~IqIRlPdG~rl~~rF~~~~tl~~V~~fV~~~-~~-~~~~F~L~ 86 (124)
T 1wj4_A 39 VNGPKAQLMLRYPDGKREQITLPEQAKLLALVKHVQSK-GY-PNERFELL 86 (124)
T ss_dssp CSSCEEEEEEECTTSCEEEEEEETTSCHHHHHHHHHHH-HC-CTTTEEEE
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CC-CCCCeEEe
Confidence 34567899999999999988999999999999999766 32 22345554
No 84
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=77.46 E-value=10 Score=23.31 Aligned_cols=41 Identities=10% Similarity=-0.051 Sum_probs=36.7
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
-...+.+.|..+.|..+.++|++..+-.+|-..|.+.-++.
T Consensus 25 ~~~mm~I~VKtl~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip 65 (100)
T 1uh6_A 25 AATMIEVVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTR 65 (100)
T ss_dssp CCCEEEEEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred CCCeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 34569999999999999999999999999999999998874
No 85
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=77.09 E-value=7.5 Score=23.20 Aligned_cols=40 Identities=5% Similarity=0.075 Sum_probs=35.0
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
....+.+.|..+ +..+.+++.+.++-.+|-.++.+..++.
T Consensus 22 ~~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 61 (101)
T 2klc_A 22 HPKIMKVTVKTP-KEKEEFAVPENSSVQQFKEEISKRFKSH 61 (101)
T ss_dssp -CCCEEEEEECS-SCEEEEEECSCCCHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEEEeC-CcEEEEEECCCCCHHHHHHHHHHHHCcC
Confidence 346689999998 7889999999999999999999999874
No 86
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=76.78 E-value=9.3 Score=24.10 Aligned_cols=40 Identities=8% Similarity=-0.067 Sum_probs=36.4
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
+..+.+.|..++|..+.+++++..+-.+|-.++.+..++.
T Consensus 79 ~~~m~i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gip 118 (159)
T 3rt3_B 79 DEPLSILVRNNKGRSSTYEVRLTQTVAHLKQQVSGLEGVQ 118 (159)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHHHHTCC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHCCC
Confidence 4568899999999999999999999999999999998875
No 87
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=76.65 E-value=6.5 Score=23.79 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=31.9
Q ss_pred EEEEEEecCCCEEEEEec-cCccHhHHHHHHHhhcCC
Q psy17656 23 EVAHITLLDGSLLDVTIE-RKAKGEDLFDRVCDHLNL 58 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~-~ka~G~~Ll~~Vc~~L~L 58 (85)
|.++|+.++|+. .++|+ +.++=.+|.++|.+.+++
T Consensus 8 M~irvrs~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gi 43 (107)
T 1wf9_A 8 TMLRVRSRDGLE-RVSVDGPHITVSQLKTLIQDQLQI 43 (107)
T ss_dssp EEEEEECSSCEE-EEEECCTTSBHHHHHHHHHHHSCC
T ss_pred EEEEEECCCCCE-EEEECCCCCcHHHHHHHHHHHhCc
Confidence 789999999966 78999 999999999999999996
No 88
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=76.41 E-value=1.6 Score=25.62 Aligned_cols=46 Identities=11% Similarity=0.288 Sum_probs=35.9
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
+.+.++|+..+| ...+++++.++-.+|++.|.+.+++. .+.|.+.+
T Consensus 3 ~~m~lRvrs~~G-~~Ri~v~~~~t~~~L~~~I~~~~~i~-~~~~~l~~ 48 (80)
T 2pjh_A 3 ESIIIRVQSPDG-VKRITATKRETAATFLKKVAKEFGFQ-NNGFSVYI 48 (80)
T ss_dssp CCCCCEEECSSE-EEECCCCSSCCHHHHHHHHHHHTCCC-TTTCCCCC
T ss_pred CcEEEEEECCCC-CEEEEcCCcChHHHHHHHHHHHcCCC-CCcceEEe
Confidence 346788999999 55677999999999999999999964 24455544
No 89
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=76.40 E-value=4.8 Score=26.53 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=33.7
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.+++++.++-.+|-.++.+..++.
T Consensus 1 MqI~Vk~~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip 37 (169)
T 3l0w_B 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (169)
T ss_dssp CEEEEEETTSCEEEEECCTTCBHHHHHHHHHHHHCCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 4678999999999999999999999999999999864
No 90
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.99 E-value=9.5 Score=22.28 Aligned_cols=34 Identities=9% Similarity=0.159 Sum_probs=30.8
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHL 56 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L 56 (85)
|.+.|..++|..+.+++++.++-.+|-.++.+.+
T Consensus 1 M~I~Vk~~~g~~~~~~v~~~~TV~~LK~~I~~~~ 34 (95)
T 1uel_A 1 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEK 34 (95)
T ss_dssp CEEEEEETTCCEEEEECCTTSBHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCEEEEEECCCCHHHHHHHHHHhhc
Confidence 4678889999999999999999999999999984
No 91
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=75.67 E-value=5.2 Score=25.36 Aligned_cols=37 Identities=11% Similarity=0.223 Sum_probs=34.4
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
+.+.|..++|..+.+++++.++-.+|-..+.+..++.
T Consensus 3 m~i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip 39 (159)
T 3rt3_B 3 WDLTVKMLAGNEFQVSLSSSMSVSELKAQITQKIGVH 39 (159)
T ss_dssp CEEEEEETTSCEEEEECCTTCCHHHHHHHHHHHHCCC
T ss_pred eEEEEEECCCCEEEEEeCCCCcHHHHHHHHHHHhCCC
Confidence 6788999999999999999999999999999999985
No 92
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=75.42 E-value=0.57 Score=33.34 Aligned_cols=50 Identities=10% Similarity=-0.032 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 9 ESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
++..+|+-..++..+.++| -.||.++.|.|.+.++=+.|++..|++.++.
T Consensus 8 ~~~~~~~~~~p~e~InLKV-~qdGseV~FKIKrtTpL~KLM~AYcERqGLs 57 (227)
T 3v7o_A 8 HSGEVKPEVKPETHINLKV-SDGSSEIFFKIKKTTPLRRLMEAFAKRQGKE 57 (227)
T ss_dssp ---------------------------------------------------
T ss_pred cCCccCCCCCCCCeEEEEE-eCCCCEEEEEEccCChHHHHHHHHHHHhCCC
Confidence 3444444455678899999 6799999999999999999999999999874
No 93
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.30 E-value=12 Score=23.02 Aligned_cols=63 Identities=16% Similarity=0.113 Sum_probs=45.8
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCCC
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY 83 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K~ 83 (85)
-+.+.+...|.++-.+...+.|.|+..=++|+-.||+.-++.-..|-=| .......=||++|.
T Consensus 6 ~PE~TvRLvVNy~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll---~d~~~~e~LdLskS 68 (91)
T 2daj_A 6 SGEKTVRVVINFKKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLL---KDYQSQEPLDLTKS 68 (91)
T ss_dssp CCCSCEEEEEEETTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEE---SCSSCCCBCCTTSC
T ss_pred CCccEEEEEEeecCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEe---cCCCCCcccchhcc
Confidence 3558899999999887788899999999999999999988754443222 22222333677663
No 94
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=75.01 E-value=13 Score=23.25 Aligned_cols=39 Identities=5% Similarity=0.060 Sum_probs=35.1
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
...+.+.|..+ +..+.++|++..+-.+|-.++++..++.
T Consensus 30 ~~~m~I~Vk~~-g~~~~l~v~~~~TV~~LK~~I~~~~gip 68 (125)
T 1j8c_A 30 PKIIKVTVKTP-KEKEEFAVPENSSVQQFKEAISKRFKSQ 68 (125)
T ss_dssp CCCEEEEEECS-SCEEEEEECTTCCHHHHHHHHHHHHCSC
T ss_pred CCcEEEEEEeC-CeEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 46799999999 8899999999999999999999999874
No 95
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=74.85 E-value=12 Score=22.86 Aligned_cols=47 Identities=11% Similarity=0.210 Sum_probs=35.6
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~ 67 (85)
......+.|+|+||+.+.-.+....+=++|++-|-.+ +. ...-|-|.
T Consensus 20 ~~~~~~IqiRlpdG~r~~rrF~~~~tl~~v~~fv~~~-~~-~~~~f~L~ 66 (109)
T 2cr5_A 20 AEEVVTVALRCPNGRVLRRRFFKSWNSQVLLDWMMKV-GY-HKSLYRLS 66 (109)
T ss_dssp CSSEEEEEEECTTSCEEEEEEESSSBTHHHHHHHHHH-TC-CTTTEEEE
T ss_pred CCCcEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHhc-CC-CCCCeEEE
Confidence 3568999999999998888888888889999998754 21 23345554
No 96
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=76.55 E-value=0.63 Score=26.00 Aligned_cols=37 Identities=8% Similarity=0.073 Sum_probs=31.5
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.+++++.++-.+|-+.+++..++.
T Consensus 1 M~i~Vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~ 37 (76)
T 3b1l_X 1 MIVFVRFNSSYGFPVEVDSDTSILQLKEVVAKQQGVP 37 (76)
Confidence 3567888899888999999999999999999888864
No 97
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=73.67 E-value=11 Score=23.07 Aligned_cols=44 Identities=9% Similarity=-0.028 Sum_probs=37.0
Q ss_pred CCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 16 KPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 16 ~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
....+..+.+.|..+.|....+.+++..+=.+|-.++.+..|+.
T Consensus 15 ~~~~~~mIqI~Vk~~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip 58 (93)
T 3plu_A 15 VPRGSHMIEVVVNDRLGKKVRVKCLGEDSVGDFKKVLSLQIGTQ 58 (93)
T ss_dssp -----CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHHHTCC
T ss_pred cCCCCceEEEEEECCCCCEEEEEECCcCHHHHHHHHHHHHhCCC
Confidence 34567889999999999999999999999999999999999984
No 98
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=72.72 E-value=11 Score=21.75 Aligned_cols=36 Identities=6% Similarity=-0.104 Sum_probs=32.5
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHL 56 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L 56 (85)
..+.+.|..+++..+.++|.+..+-.+|-.++++..
T Consensus 6 ~~m~i~Vk~~~g~~~~~~v~~~~TV~~LK~~i~~~~ 41 (95)
T 1wia_A 6 SGINVRLKFLNDTEELAVARPEDTVGTLKSKYFPGQ 41 (95)
T ss_dssp CSEEEEEEETTTEEEEEEECSSSBHHHHHHHHSSST
T ss_pred CeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHhhC
Confidence 468999999999999999999999999999998765
No 99
>2l05_A Serine/threonine-protein kinase B-RAF; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=72.64 E-value=9.7 Score=23.59 Aligned_cols=37 Identities=11% Similarity=0.047 Sum_probs=33.6
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
-.++|.|++++...+.|.+.-+-++.+...++.=||.
T Consensus 18 ~~irvhLPNqQrT~V~VrpG~tlrdAL~KaLk~R~L~ 54 (95)
T 2l05_A 18 PIVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLI 54 (95)
T ss_dssp CEEEEEETTTEEEEEECCTTCBHHHHHHHHHHHHTCC
T ss_pred cEEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 3899999999999999999999999999999888884
No 100
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=71.85 E-value=12 Score=21.55 Aligned_cols=45 Identities=20% Similarity=0.245 Sum_probs=35.5
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~ 67 (85)
....++|+++||+.+.-......+-++|++-|-.+ + .+..-|-|.
T Consensus 6 ~~~~i~iRlpdG~r~~~~F~~~~tl~~v~~fv~~~-~-~~~~~f~L~ 50 (84)
T 3qx1_A 6 PVSKLRIRTPSGEFLERRFLASNKLQIVFDFVASK-G-FPWDEYKLL 50 (84)
T ss_dssp CEEEEEEECTTSCEEEEEEETTSBHHHHHHHHHHT-T-CCTTTEEEE
T ss_pred CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHc-C-CCCCCeEEE
Confidence 45689999999999888888999999999999763 3 244556665
No 101
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=70.47 E-value=15 Score=22.12 Aligned_cols=40 Identities=8% Similarity=-0.076 Sum_probs=31.4
Q ss_pred CCCCCeEEEEEEecCCC--EEEEEeccCccHhHHHHHHHhhc
Q psy17656 17 PLKGKIEVAHITLLDGS--LLDVTIERKAKGEDLFDRVCDHL 56 (85)
Q Consensus 17 ~~~~~~~~~~V~LLD~t--~~~~~v~~ka~G~~Ll~~Vc~~L 56 (85)
......+.+.|..+++. .+.+++++.++-.+|-.++.+.+
T Consensus 18 ~~~~~~m~I~VK~~~g~~~~i~l~v~~~~TV~~LK~~I~~~~ 59 (99)
T 2kdb_A 18 YFQGHPVTLIIKAPNQKYSDQTISCFLNWTVGKLKTHLSNVY 59 (99)
T ss_dssp -----CEEEEEECTTSSSCCEEEEECTTSBHHHHHHHHHHHS
T ss_pred CCCCCeEEEEEEcCCCCEEEEEEEcCCCCHHHHHHHHHHHHh
Confidence 34556799999999998 57888899999999999999876
No 102
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=69.28 E-value=15 Score=21.59 Aligned_cols=38 Identities=13% Similarity=0.101 Sum_probs=33.9
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.|..+.+ .++++|++..+-.+|-.++.+..++.
T Consensus 14 ~~~~I~Vk~~~~-~~~l~v~~~~TV~~LK~~I~~~~gip 51 (94)
T 2kan_A 14 RKIHVTVKFPSK-QFTVEVDRTETVSSLKDKIHIVENTP 51 (94)
T ss_dssp CCEEEEEECSSC-EEEEEECTTCBHHHHHHHHHHHSSSC
T ss_pred CCEEEEEEcCCc-EEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 458899999988 88999999999999999999998874
No 103
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=68.57 E-value=17 Score=22.94 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=32.1
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhh
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDH 55 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~ 55 (85)
..+.++|.+++|....+++++..+-.+|-+.|.+.
T Consensus 16 ~~m~I~vktl~G~~~~lev~~s~TV~~lK~~I~~~ 50 (125)
T 2gow_A 16 DMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 50 (125)
T ss_dssp TCEEEEEECTTSCEEEEEECTTSBHHHHHHHHHSS
T ss_pred CeEEEEEEeCCCCEEEEEeCCccHHHHHHHHHHHH
Confidence 45999999999999999999999999999999984
No 104
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=67.96 E-value=16 Score=22.84 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=33.6
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhh
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDH 55 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~ 55 (85)
....+.+.|.++.|....++|++..+-.+|-+.|.+.
T Consensus 13 ~~~~m~I~vKtl~G~t~~lev~~s~TV~~lK~kI~~~ 49 (116)
T 1wgh_A 13 PADMINLRLILVSGKTKEFLFSPNDSASDIAKHVYDN 49 (116)
T ss_dssp CSSSEEEEEECSSSCEEEEEECTTCBHHHHHHHHHHS
T ss_pred CCCeEEEEEEeCCCCEEEEEECCcCHHHHHHHHHHHh
Confidence 4556999999999999999999999999999999985
No 105
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=67.82 E-value=7 Score=23.04 Aligned_cols=41 Identities=10% Similarity=0.190 Sum_probs=33.7
Q ss_pred EEEEEeccCccHhHHHHHHHhhcCCc---c-cceeeEEEecCCCC
Q psy17656 34 LLDVTIERKAKGEDLFDRVCDHLNLL---E-RDYFGLTYDNKYDP 74 (85)
Q Consensus 34 ~~~~~v~~ka~G~~Ll~~Vc~~L~L~---E-~dYFGL~y~d~~~~ 74 (85)
...+.|.+...=++|.+.+.+.|++. + ..-+.|+|.|.+|-
T Consensus 3 ~~~i~V~~~i~f~~L~~kI~~kl~~~~~~~~~~~~~lkYkDEdGD 47 (77)
T 1pqs_A 3 IFTLLVEKVWNFDDLIMAINSKISNTHNNNISPITKIKYQDEDGD 47 (77)
T ss_dssp EEEEECTTCCCSHHHHHHHHHHTTTTTSSCSCSTTCCEEEETTTE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHcccccccccceeEEEEEcCCCC
Confidence 45677888999999999999999985 1 35689999998663
No 106
>1c1y_B Proto-onkogene serine/threonine protein kinase RAF-1; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: d.15.1.5 PDB: 1gua_B* 1rfa_A 3kud_B* 3kuc_B*
Probab=67.34 E-value=15 Score=21.87 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=32.6
Q ss_pred EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.++|+|++++...+.|.+.-+-++.+...++.=||.
T Consensus 3 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~ 38 (77)
T 1c1y_B 3 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ 38 (77)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCC
T ss_pred eEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 578999999999999999999999999999888874
No 107
>1wxm_A A-RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain (RBD), ubiquitin-like fold, A-RAF kinase, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=66.33 E-value=14 Score=22.44 Aligned_cols=36 Identities=17% Similarity=0.078 Sum_probs=33.4
Q ss_pred EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.++|+|++++...+.|.+.-+-++.+...++.=+|.
T Consensus 9 ~irvhLPn~QrT~V~VrpG~tlrdaL~KaLk~R~L~ 44 (86)
T 1wxm_A 9 TVKVYLPNKQRTVVTVRDGMSVYDSLDKALKVRGLN 44 (86)
T ss_dssp EEEEECSSSCEEEEECCSSCBSHHHHHHHHHTTTCC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 799999999999999999999999999999988885
No 108
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=65.99 E-value=12 Score=21.86 Aligned_cols=46 Identities=4% Similarity=-0.065 Sum_probs=34.5
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEE
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y 68 (85)
...+.+.|.. +..+.+++++.++-.+|-.++++..++. .+..-|.|
T Consensus 17 ~~~m~I~Vk~--g~~~~l~v~~~~TV~~LK~~I~~~~gip-~~~qrLi~ 62 (93)
T 2l7r_A 17 RGSMQLFVRA--QELHTFEVTGQETVAQIKAHVASLEGIA-PEDQVVLL 62 (93)
T ss_dssp ---CEEEEES--SSEEEEECCSSCBHHHHHHHHHHHHTCC-GGGCEEEE
T ss_pred CCcEEEEEEC--CCEEEEEeCCCCcHHHHHHHHHHHhCcC-hhHEEEEE
Confidence 3457777887 7889999999999999999999999864 33334444
No 109
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=64.92 E-value=13 Score=21.42 Aligned_cols=38 Identities=8% Similarity=-0.088 Sum_probs=32.3
Q ss_pred CeEEEEEEecCCC--EEEEEeccCccHhHHHHHHHhhc--CC
Q psy17656 21 KIEVAHITLLDGS--LLDVTIERKAKGEDLFDRVCDHL--NL 58 (85)
Q Consensus 21 ~~~~~~V~LLD~t--~~~~~v~~ka~G~~Ll~~Vc~~L--~L 58 (85)
..+.+.|..+++. .+++++++.++-.+|-.++.+.. ++
T Consensus 6 ~~m~i~Vk~~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i 47 (93)
T 1wgd_A 6 SGVTLLVKSPNQRHRDLELSGDRGWSVGHLKAHLSRVYPERP 47 (93)
T ss_dssp CCCEEEEECSSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCC
T ss_pred cEEEEEEEeCCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCC
Confidence 4588999999998 56677779999999999999987 65
No 110
>1rrb_A RAF-1 RBD, RAF proto-oncogene serine/threonine-protein kinase; RAS-binding domain, transferase, riken structural genomics/proteomics initiative; NMR {Rattus norvegicus} SCOP: d.15.1.5
Probab=64.04 E-value=14 Score=23.27 Aligned_cols=36 Identities=11% Similarity=0.020 Sum_probs=32.7
Q ss_pred EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.++|.|++++...+.|.+.-+-++.+....+.=||.
T Consensus 20 ~ir~hLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~ 55 (107)
T 1rrb_A 20 TIRVFLPNKQRTVVNVRNGMSLHDCLMKALKVRGLQ 55 (107)
T ss_dssp EEEEECTTTCCEEEECCTTCBHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCeEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 589999999999999999999999999998888874
No 111
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=63.65 E-value=1.5 Score=27.55 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.++|++.++-.+|-..+.+..++.
T Consensus 1 M~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~gip 37 (128)
T 3u5e_m 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (128)
T ss_dssp -------------------------------------
T ss_pred CEEEEEeCCCCEEEEEeCCCCCHHHHHHHHHHHhCcC
Confidence 3567888899999999999999999999999888864
No 112
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=62.71 E-value=1.6 Score=32.89 Aligned_cols=50 Identities=10% Similarity=-0.008 Sum_probs=0.0
Q ss_pred cCCCCCCCCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 9 ESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
++.-+|+...+...+.++|.- +|+++.|.|.+.++=+.|++..|++.++.
T Consensus 8 ~~~~~~~~~~~~~~I~LKV~~-~g~~v~FkIk~~t~l~kLm~aY~~r~G~~ 57 (360)
T 3ix6_A 8 HSGEVKPEVKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKE 57 (360)
T ss_dssp ---------------------------------------------------
T ss_pred ccCccccCCCCCCeEEEEEec-CCcEEEEEEecCChHHHHHHHHHHHhCCC
Confidence 445555556677788889986 78899999999999999999999999874
No 113
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=62.01 E-value=19 Score=26.29 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=36.0
Q ss_pred CCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 20 GKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 20 ~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
...+.+.|..++|..+.+++++.++-.+|-.+|.+..++.
T Consensus 231 ~~~MqI~VKtl~Gk~~~leV~~s~TV~dLK~kI~~~~GIp 270 (307)
T 3ai5_A 231 TGSMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIP 270 (307)
T ss_dssp CCCEEEEEECTTSCEEEEEECTTCBHHHHHHHHHHHHCCC
T ss_pred CCeEEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 3568889999999999999999999999999999999874
No 114
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=61.29 E-value=24 Score=21.26 Aligned_cols=40 Identities=8% Similarity=0.011 Sum_probs=33.6
Q ss_pred CCeEEEEEEecC----------CCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 20 GKIEVAHITLLD----------GSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 20 ~~~~~~~V~LLD----------~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
...+.+.|..++ |..+.++|++.++-.+|-.++.+..++.
T Consensus 23 ~~~i~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip 72 (115)
T 1we7_A 23 KGPVSIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMP 72 (115)
T ss_dssp CSCEEEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCC
T ss_pred CCCEEEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCC
Confidence 356888888864 5678999999999999999999998874
No 115
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=61.03 E-value=23 Score=20.90 Aligned_cols=38 Identities=0% Similarity=-0.157 Sum_probs=32.5
Q ss_pred eEEEEEEecCC----CEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 22 IEVAHITLLDG----SLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 22 ~~~~~V~LLD~----t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.|.+.|..+.+ ..+.++|++.++-.+|-.+|.+..++.
T Consensus 7 ~m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip 48 (102)
T 1v5o_A 7 GMLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVP 48 (102)
T ss_dssp CEEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCC
T ss_pred eEEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcC
Confidence 47888888754 688899999999999999999999874
No 116
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus}
Probab=60.15 E-value=62 Score=25.62 Aligned_cols=59 Identities=12% Similarity=0.063 Sum_probs=46.2
Q ss_pred CCCCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCe
Q psy17656 15 TKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQ 75 (85)
Q Consensus 15 ~~~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~ 75 (85)
.+.+......|+|...|.|...+.+...++++++...+.+.+++.|. +-|.=+...+..
T Consensus 345 ~~~~~~d~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~v~~~~~~ 403 (694)
T 3cf6_E 345 QPIRGSDEVLFKVYCIDHTYTTIRVPVAASVKEVISAVADKLGSGEG--LIIVKMNSGGEK 403 (694)
T ss_dssp CCCCTTSEEEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHHTCCSC--EEEEEECTTSCE
T ss_pred CCCCCCCceeEEEEccCCceeEEEeeccccHHHHHHHHHHHhCCccc--ceEEEEeecCcc
Confidence 34456678899999999999999999999999999999999998652 444444433433
No 117
>2c5l_C Phosphoinositide-specific phospholipase C PLC-epsilon; signaling protein/complex, RAS, ubiquitin superfold, oncogene, GTP-binding; HET: GTP; 1.9A {Homo sapiens} SCOP: d.15.1.5 PDB: 2byf_A
Probab=57.90 E-value=33 Score=21.75 Aligned_cols=50 Identities=10% Similarity=0.053 Sum_probs=38.7
Q ss_pred CCeEEEEEE--ecCCCEEEEEeccCccHhHHHHHHHhhcCCc--------ccceeeEEEe
Q psy17656 20 GKIEVAHIT--LLDGSLLDVTIERKAKGEDLFDRVCDHLNLL--------ERDYFGLTYD 69 (85)
Q Consensus 20 ~~~~~~~V~--LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~--------E~dYFGL~y~ 69 (85)
...+.|+|+ .+|-.-..+.+...+++++++.++....+.. ..+|+=.+-.
T Consensus 5 ~~tf~v~V~~v~p~~py~iv~vt~~STAqdvI~eaL~kag~~~~~~~~~~~~dYvLvEev 64 (117)
T 2c5l_C 5 EESFFVQVHDVSPEQPRTVIKAPRVSTAQDVIQQTLCKAKYSLSILSNPNPSDYVLLEEV 64 (117)
T ss_dssp CCEEEEEEESCCSSCCEEEEEEETTCBHHHHHHHHHHHTTTSHHHHHSCCGGGEEEEEEE
T ss_pred CceEEEEEecCCCCCCeEEEEeCCCCcHHHHHHHHHHHcCCccccccCCCchHeEEEEEE
Confidence 456778887 4555567889999999999999999997753 4567766655
No 118
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=54.95 E-value=38 Score=21.55 Aligned_cols=40 Identities=13% Similarity=0.146 Sum_probs=35.2
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE 60 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E 60 (85)
..+.+.|..++|..+.+.+.+..+-.+|-.+|....++..
T Consensus 95 gg~~i~Vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~ 134 (172)
T 3u30_A 95 GGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPP 134 (172)
T ss_dssp CCEEEEEEESSCCEEEEEECTTCBHHHHHHHHHHHHCCCG
T ss_pred ccccceeecccCcceeEEecCCCCHHHHHHHHHHHhCCCc
Confidence 4567788889999999999999999999999999998853
No 119
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=53.78 E-value=2.7 Score=27.55 Aligned_cols=37 Identities=11% Similarity=0.218 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..++|..+.++|++.++-.+|-.++.+..++.
T Consensus 1 MqI~VK~l~G~~~~l~V~~~~TV~~LK~~I~~~~gip 37 (152)
T 3u5c_f 1 MQIFVKTLTGKTITLEVESSDTIDNVKSKIQDKEGIP 37 (152)
T ss_dssp -------------------------------------
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHHHHhCCC
Confidence 4567888899999999999999999999999888763
No 120
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.51 E-value=32 Score=20.19 Aligned_cols=38 Identities=3% Similarity=-0.071 Sum_probs=32.7
Q ss_pred CeEEEEEEecCCCEE-EEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLL-DVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~-~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.|.. .+..+ ++++++.++-.+|-.++.+..++.
T Consensus 6 ~~m~i~Vk~-~g~~~~~l~v~~~~TV~~lK~~I~~~tgip 44 (96)
T 1wgg_A 6 SGYSVTVKW-GKEKFEGVELNTDEPPMVFKAQLFALTGVQ 44 (96)
T ss_dssp CEEEEEEEE-TTEEEEEEEEESSSCHHHHHHHHHHHTCCC
T ss_pred cEEEEEEEE-CCEEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 468888985 67788 699999999999999999998874
No 121
>3ny5_A Serine/threonine-protein kinase B-RAF; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics consortium; HET: MSE; 1.99A {Homo sapiens} SCOP: d.15.1.0
Probab=52.84 E-value=35 Score=21.06 Aligned_cols=36 Identities=11% Similarity=0.053 Sum_probs=32.1
Q ss_pred EEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 24 VAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.++|.|++++...+.|.+.-+-++.+...++.=+|.
T Consensus 15 ~irvhLPNqQrT~V~VrpG~tlrdaL~KaLk~R~L~ 50 (96)
T 3ny5_A 15 IVRVFLPNKQRTVVPARCGVTVRDSLKKALMMRGLI 50 (96)
T ss_dssp EEEEEETTTEEEEEECCTTCBHHHHHHHHHHTTTCC
T ss_pred EEEEECCCCceEEEEecCCcCHHHHHHHHHHHcCCC
Confidence 689999999999999999989999999998877774
No 122
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=51.18 E-value=21 Score=20.61 Aligned_cols=37 Identities=16% Similarity=0.035 Sum_probs=31.9
Q ss_pred eEEEEEEecCCCEEEE-EeccCccHhHHHHHHHhhcCCc
Q psy17656 22 IEVAHITLLDGSLLDV-TIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~-~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.+.+.|.. .+..+.+ ++++.++-.+|-.++.+..++.
T Consensus 7 ~m~i~Vk~-~g~~~~i~~v~~~~TV~~lK~~I~~~~gip 44 (90)
T 1v5t_A 7 GLPIIVKW-GGQEYSVTTLSEDDTVLDLKQFLKTLTGVL 44 (90)
T ss_dssp SCCEEEEE-TTEEEEECSCCSSSBHHHHHHHHHHHTCCC
T ss_pred eEEEEEEE-CCEEEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 46777875 7788889 9999999999999999999974
No 123
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=50.92 E-value=6.9 Score=23.47 Aligned_cols=40 Identities=8% Similarity=0.010 Sum_probs=31.3
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
.+..+.+.|.. .|..+.+.+.+.++-.+|-.++++..++.
T Consensus 25 ~~m~i~I~Vk~-~g~~~~l~v~~~~TV~~LK~~I~~~~gip 64 (101)
T 3m63_B 25 GAMSLNIHIKS-GQDKWEVNVAPESTVLQFKEAINKANGIP 64 (101)
T ss_dssp ----CCEEEEC-SSCCCCBCCCTTSBHHHHHHHHHHHHSCC
T ss_pred CCcEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHHHHCcC
Confidence 33446677776 88889999999999999999999999874
No 124
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=50.32 E-value=46 Score=21.12 Aligned_cols=36 Identities=17% Similarity=0.102 Sum_probs=31.7
Q ss_pred CeEEEEEEecCCCEE-EEEeccCccHhHHHHHHHhhc
Q psy17656 21 KIEVAHITLLDGSLL-DVTIERKAKGEDLFDRVCDHL 56 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~-~~~v~~ka~G~~Ll~~Vc~~L 56 (85)
..+.+.|.+++|+.+ .+.+++..+-..|-+.|....
T Consensus 15 ~~~~i~~kt~~G~~i~~l~v~psdTV~~lK~kI~~~~ 51 (126)
T 1se9_A 15 NQLEIKFRLTDGSDIGPKAFPDATTVSALKETVISEW 51 (126)
T ss_dssp CCEEEEEEETTSCEEEEEEECTTCBHHHHHHHHHHHS
T ss_pred ccEEEEEEECCCCEEEeeecCccCHHHHHHHHHHhhc
Confidence 578999999999888 699999999999999996544
No 125
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=50.01 E-value=18 Score=21.26 Aligned_cols=36 Identities=0% Similarity=-0.016 Sum_probs=29.8
Q ss_pred EEEEEEecCCCEEEEEec--cCccHhHHHHHH-HhhcCC
Q psy17656 23 EVAHITLLDGSLLDVTIE--RKAKGEDLFDRV-CDHLNL 58 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~--~ka~G~~Ll~~V-c~~L~L 58 (85)
+.+.|..+.|..+.++++ +..+-.+|-+++ .+.-|+
T Consensus 2 mqI~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gi 40 (87)
T 2lxa_A 2 VHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKAS 40 (87)
T ss_dssp CEEEEEECSSSCEECCEECCTTCBHHHHHHHHHHTTSCS
T ss_pred EEEEEEcCCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCC
Confidence 578899999998887755 999999999999 655564
No 126
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=48.33 E-value=36 Score=19.33 Aligned_cols=38 Identities=13% Similarity=0.180 Sum_probs=30.6
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.+ .+.|..+.+++++.++-.+|-.++.+..++.
T Consensus 11 ~~~~~~~-~~~g~~~~l~v~~~~TV~~LK~~I~~~~gip 48 (85)
T 2kd0_A 11 STIKLTV-KFGGKSIPLSVSPDCTVKDLKSQLQPITNVL 48 (85)
T ss_dssp CCEEEEE-EETTEEEEEEECTTSBHHHHHHHHHHHHCCC
T ss_pred CcEEEEE-EECCEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 4444444 4578889999999999999999999998874
No 127
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=47.31 E-value=44 Score=20.04 Aligned_cols=59 Identities=17% Similarity=0.305 Sum_probs=44.9
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccCC
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVN 82 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~K 82 (85)
.++.+.......-+..+.|.|.++++-..|+..-|..-++.-..-+-|.|-. -||+|+.
T Consensus 6 ~~~~~~~~~~~~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDG-----dRLdp~~ 64 (82)
T 3goe_A 6 HHKLITLLLRSSKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEG-----EWLDPND 64 (82)
T ss_dssp CCCEEEEEEEESSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETT-----EECCTTS
T ss_pred hhHHHHHhhhccCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcC-----cccCccC
Confidence 3566666666666778999999999999999999999998766555666632 5677654
No 128
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=44.06 E-value=4.8 Score=29.51 Aligned_cols=44 Identities=7% Similarity=-0.067 Sum_probs=0.0
Q ss_pred CCCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656 17 PLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLER 61 (85)
Q Consensus 17 ~~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~ 61 (85)
.+....+.++|.- ++.++.|.|.+.++=+.|++..|++.++...
T Consensus 25 ~~~~~~i~lkv~~-~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~ 68 (389)
T 4da1_A 25 VKPETHINLKVSD-GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMD 68 (389)
T ss_dssp ---------------------------------------------
T ss_pred CCCCCcEEEEEec-CCcEEEEEECCCChHHHHHHHHHHHhCCCcc
Confidence 3455677888876 7888999999999999999999999987533
No 129
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=38.69 E-value=64 Score=19.41 Aligned_cols=37 Identities=8% Similarity=0.213 Sum_probs=33.9
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCC
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNL 58 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L 58 (85)
+.+.+++..=|| .+-+.+.....=++|.+.++.+|.+
T Consensus 11 ~~~KVK~yy~DD-IiAIrvP~di~~~~L~dKi~~RLk~ 47 (85)
T 1ip9_A 11 KTTKIKFYYKDD-IFALMLKGDTTYKELRSKIAPRIDT 47 (85)
T ss_dssp CCEEEEECBTTC-CEEEEECSCCCHHHHHHHHHHHHTS
T ss_pred CceEEEEEecCc-EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 558999999887 8889999999999999999999999
No 130
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=38.54 E-value=6.6 Score=26.88 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=0.0
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
|.+.|..|+|..+.++|++..+-.+|-..|.+..++.
T Consensus 1 MqI~VKtL~GktitLeV~~sdTV~~LK~kI~~keGIP 37 (189)
T 2xzm_9 1 MQVQVKTLEGETKIYTLEQGTSVLDLKSQISQDMGFE 37 (189)
T ss_dssp -------------------------------------
T ss_pred CEEEEEcCCCCEEEEEECCcChHHHHHHHHHHHhCcC
Confidence 4567888999999999999999889988888877764
No 131
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.60 E-value=77 Score=20.04 Aligned_cols=40 Identities=10% Similarity=0.121 Sum_probs=34.3
Q ss_pred CCeEEEEEE-ecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 20 GKIEVAHIT-LLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 20 ~~~~~~~V~-LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
...+.++|. ..++..+++++.+.++-.+|-+.+...+++.
T Consensus 13 ~~~itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP 53 (118)
T 2daf_A 13 DSLATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIP 53 (118)
T ss_dssp SSCEEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCC
T ss_pred CccEEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCC
Confidence 345888887 6678899999999999999999999998874
No 132
>3o27_A Putative uncharacterized protein; swapped-hairpin fold, transcription factor, DNA binding PROT; 2.80A {Sulfolobus islandicus}
Probab=36.50 E-value=26 Score=20.36 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=21.3
Q ss_pred HHHHhhcCCcccceeeEEEecCCCC
Q psy17656 50 DRVCDHLNLLERDYFGLTYDNKYDP 74 (85)
Q Consensus 50 ~~Vc~~L~L~E~dYFGL~y~d~~~~ 74 (85)
..|.+.|+|.+-|.|-+.+.++++.
T Consensus 31 aeI~kaLgIk~gD~fel~ve~kdge 55 (68)
T 3o27_A 31 KDIAEALDIKPDDTFILNMEQKDGD 55 (68)
T ss_dssp HHHHHHTTCCTTCCEEEEEEEETTE
T ss_pred HHHHHHhCCCCCCEEEEEEecCCCe
Confidence 4688899999999999999877663
No 133
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.81 E-value=71 Score=19.14 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=32.7
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc-ccc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL-ERD 62 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~-E~d 62 (85)
..+.+.|.+ .|..+.+++++.++..+|-.++++.-++. +..
T Consensus 8 ~m~~~~vk~-~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~Q 49 (100)
T 2dzm_A 8 RMLDFRVEY-RDRNVDVVLEDTCTVGEIKQILENELQIPVSKM 49 (100)
T ss_dssp CEEEEEEEC-SSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTC
T ss_pred ceEEEEEEe-CCeEEEEEECCCCcHHHHHHHHHHHHCCChhHe
Confidence 345565555 67788999999999999999999999984 443
No 134
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=34.16 E-value=75 Score=18.87 Aligned_cols=40 Identities=0% Similarity=-0.044 Sum_probs=30.4
Q ss_pred CCCeEEEEEEecCCCEEEE--EeccCccHhHHHHHHHhhc-CC
Q psy17656 19 KGKIEVAHITLLDGSLLDV--TIERKAKGEDLFDRVCDHL-NL 58 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~--~v~~ka~G~~Ll~~Vc~~L-~L 58 (85)
....+.+.|..+.|..+.+ ++.+..+-.+|-+++++.. ++
T Consensus 16 ~~~~m~I~VKtl~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gi 58 (98)
T 4a20_A 16 DNAAVHLTLKKIQAPKFSIEHDFSPSDTILQIKQHLISEEKAS 58 (98)
T ss_dssp --CCEEEEEEECSSSCEEEEEEECTTCBHHHHHHHHHHTTSCS
T ss_pred CCCCEEEEEEcCCCCEEEEEEecCCCChHHHHHHHHHHHhcCC
Confidence 3466899999999997666 5569999999999994444 54
No 135
>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B
Probab=33.64 E-value=83 Score=19.24 Aligned_cols=58 Identities=16% Similarity=0.066 Sum_probs=36.8
Q ss_pred CCeEEEEEEec-----CCCEEEEEeccC-----------ccHhHHHHHHHhhc-CCcccceeeEEEecCCCCeecc
Q psy17656 20 GKIEVAHITLL-----DGSLLDVTIERK-----------AKGEDLFDRVCDHL-NLLERDYFGLTYDNKYDPQCWL 78 (85)
Q Consensus 20 ~~~~~~~V~LL-----D~t~~~~~v~~k-----------a~G~~Ll~~Vc~~L-~L~E~dYFGL~y~d~~~~~~WL 78 (85)
+..+.+++.|+ ++..-.|.+... ..=..|.+.|-+-. +|.+. -|-|.|.|.+|-..++
T Consensus 3 ~m~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~l~~~-~f~l~Y~DedGDlIti 77 (102)
T 2kkc_A 3 HMSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPALRPG-GFQAHYRAERGDLVAF 77 (102)
T ss_dssp CCEEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS-CEEEEEECTTCCEEEE
T ss_pred CceEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccccCCC-cEEEEEECCCCCEEEe
Confidence 45678888886 233455666531 24566666666554 34443 5999999988866554
No 136
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=33.14 E-value=85 Score=19.19 Aligned_cols=49 Identities=12% Similarity=0.005 Sum_probs=36.9
Q ss_pred CeEEEEEEecC--C--CEEEEEeccCccHhHHHHHHHhhcCCc---ccceeeEEEe
Q psy17656 21 KIEVAHITLLD--G--SLLDVTIERKAKGEDLFDRVCDHLNLL---ERDYFGLTYD 69 (85)
Q Consensus 21 ~~~~~~V~LLD--~--t~~~~~v~~ka~G~~Ll~~Vc~~L~L~---E~dYFGL~y~ 69 (85)
..++++|..-| + ..+.+++++..+-..|-+++.+..|+. -+.+||-+-.
T Consensus 21 ~~i~l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll 76 (105)
T 4dbg_A 21 QDIRLWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLA 76 (105)
T ss_dssp CCEEEEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEE
T ss_pred CcEEEEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEc
Confidence 45555555544 4 478899999999999999999999984 3567777654
No 137
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=33.14 E-value=55 Score=17.58 Aligned_cols=27 Identities=11% Similarity=0.102 Sum_probs=18.8
Q ss_pred EEEEEecCCCEEEEEeccCccHhHHHHHH
Q psy17656 24 VAHITLLDGSLLDVTIERKAKGEDLFDRV 52 (85)
Q Consensus 24 ~~~V~LLD~t~~~~~v~~ka~G~~Ll~~V 52 (85)
.+.|.++||+.. .+...++..+++..+
T Consensus 2 ~i~i~~p~g~~~--~~~~g~T~~dla~~i 28 (73)
T 2kmm_A 2 EVMVFTPKGEIK--RLPQGATALDFAYSL 28 (73)
T ss_dssp CEEEECTTCCEE--EECTTCBHHHHHHHH
T ss_pred eEEEEcCCCCEE--EcCCCCcHHHHHHHH
Confidence 467888898764 455667777777655
No 138
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=32.08 E-value=93 Score=22.39 Aligned_cols=38 Identities=16% Similarity=0.123 Sum_probs=33.3
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
..+.++|.. .|..+++++++.++..+|-.++++..|+.
T Consensus 4 ~~i~i~Vk~-~g~~~~v~v~~~~Tv~~lK~~I~~~tgVp 41 (320)
T 3shq_A 4 KEVVVIVKW-SGKEYPVDLTDQDTVEVLRHEIFRKTQVR 41 (320)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTSBHHHHHHHHHHHHCCC
T ss_pred ceEEEEEEE-CCEEEEEEECCCCcHHHHHHHHHHHHCcC
Confidence 457888886 78889999999999999999999999974
No 139
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=31.40 E-value=72 Score=18.72 Aligned_cols=31 Identities=26% Similarity=0.307 Sum_probs=22.1
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHh
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCD 54 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~ 54 (85)
+...+++...||...++.+.+ |+.|++..-+
T Consensus 5 ~m~~V~~~~~~g~~~~v~~~~---g~tLL~aa~~ 35 (108)
T 2bt6_A 5 DKITVHFINRDGETLTTKGKI---GDSLLDVVVQ 35 (108)
T ss_dssp CEEEEEEECTTSCEEEEEEET---TCBHHHHHHH
T ss_pred ceEEEEEECCCCCEEEEEECC---CChHHHHHHH
Confidence 355666666789877888755 7888877654
No 140
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=30.68 E-value=57 Score=19.29 Aligned_cols=39 Identities=10% Similarity=-0.099 Sum_probs=31.7
Q ss_pred CeEEEEEEecCC---CEEEEEec--------c-CccHhHHHHHHHhhc--CCc
Q psy17656 21 KIEVAHITLLDG---SLLDVTIE--------R-KAKGEDLFDRVCDHL--NLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~---t~~~~~v~--------~-ka~G~~Ll~~Vc~~L--~L~ 59 (85)
..+.+.|..+++ ..+.+.+. + ..+-.+|-..+++.. ++.
T Consensus 11 ~~~~i~Vk~~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip 63 (107)
T 1x1m_A 11 SDWHLAVKLADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVP 63 (107)
T ss_dssp CSCCEEEEETTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCC
T ss_pred CceEEEEEeCCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCC
Confidence 347889999998 78888844 4 489999999999998 764
No 141
>3i9v_5 NADH-quinone oxidoreductase subunit 5; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_5* 2fug_5* 3iam_5* 3ias_5* 3m9s_5*
Probab=28.54 E-value=30 Score=23.80 Aligned_cols=53 Identities=13% Similarity=0.139 Sum_probs=32.4
Q ss_pred eEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecCCCCeeccccC
Q psy17656 22 IEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMV 81 (85)
Q Consensus 22 ~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~~~~~~WLd~~ 81 (85)
.+.++|.+.++.-..=+|..-..|...++.=+ .|.||+.|.++.+.+.||.+.
T Consensus 87 ~v~vkv~v~~~~p~vPSit~i~p~A~w~ERE~-------~DmfGI~F~GhPdlRRiLl~~ 139 (207)
T 3i9v_5 87 RFFVRVYVPEEDPRLPTVTDLWGSANFLEREV-------YDLFGIVFEGHPDLRKILTPE 139 (207)
T ss_dssp CEEEEEEECSSCCBCCCCTTTCSTHHHHHHHH-------HHTSCCBCTTCSCCCCCSSCT
T ss_pred EEEEEEEecCCCCcCCchhhhhcccChhHhhh-------hhhcCcEeCCCCCCccccCCC
Confidence 44555555443221223344445666666533 378999999988888888764
No 142
>1otg_A 5-carboxymethyl-2-hydroxymuconate isomerase; 2.10A {Escherichia coli} SCOP: d.80.1.2
Probab=27.66 E-value=60 Score=19.94 Aligned_cols=54 Identities=15% Similarity=0.180 Sum_probs=35.9
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCC-cc--cceeeEEEecCCCCeec
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNL-LE--RDYFGLTYDNKYDPQCW 77 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L-~E--~dYFGL~y~d~~~~~~W 77 (85)
....+.|.++.|.. .-+++..++.+++.+.++++- .. .....+...+-+....|
T Consensus 59 ~fvhi~i~i~~GRs---~eqK~~L~~~v~~~l~~~l~~~~~~~~~~vsv~i~E~~~~~~~ 115 (125)
T 1otg_A 59 AFVHMTLKIGAGRS---LESRQQAGEMLFELIKTHFAALMESRLLALSFEIEELHPTLNF 115 (125)
T ss_dssp EEEEEEEEECTTCC---HHHHHHHHHHHHHHHHHHTHHHHTTSEEEEEEEEEECCSSSEE
T ss_pred ceEEEEEEECCCCC---HHHHHHHHHHHHHHHHHHhhhhcCCCceEEEEEEEEcCCccCH
Confidence 46788888888864 335667799999999999973 23 34455555554333355
No 143
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=27.63 E-value=56 Score=24.22 Aligned_cols=36 Identities=8% Similarity=0.105 Sum_probs=32.3
Q ss_pred CeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHL 56 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L 56 (85)
..|.+.|..++|..+.++|.+..+-.+|-..|....
T Consensus 6 ~~M~I~VKtl~Gk~~~leV~~~~TV~~LK~~I~~~~ 41 (368)
T 1oqy_A 6 SAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEK 41 (368)
T ss_dssp CCCCEEEEETTTEEEEECCCTTCBHHHHHHHHHHHT
T ss_pred ceEEEEEEeCCCCEEEEEeCCCChHHHHHHHHHHHh
Confidence 457899999999999999999999999999999854
No 144
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=27.09 E-value=99 Score=18.06 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=37.3
Q ss_pred CeEEEEEEe--cCCCEEEEEeccCccHhHHHHHHHhhcCCccc--ceeeEEEec
Q psy17656 21 KIEVAHITL--LDGSLLDVTIERKAKGEDLFDRVCDHLNLLER--DYFGLTYDN 70 (85)
Q Consensus 21 ~~~~~~V~L--LD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~--dYFGL~y~d 70 (85)
..+.+++-+ -.+.++.+.+...-+-+.|.+.|.+.+++... .-|-++..+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~N 56 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVN 56 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGG
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEec
Confidence 345666766 46779999999999999999999999998643 213455443
No 145
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=26.93 E-value=90 Score=17.56 Aligned_cols=37 Identities=11% Similarity=0.208 Sum_probs=26.0
Q ss_pred EEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccce
Q psy17656 23 EVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDY 63 (85)
Q Consensus 23 ~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dY 63 (85)
|.++|.+......++++...++-.+|++ .|+|.+...
T Consensus 1 M~v~Vkl~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~V 37 (74)
T 2l32_A 1 MNVTVEVVGEETSEVAVDDDGTYADLVR----AVDLSPHEV 37 (74)
T ss_dssp CEEEEECSSSSEEEEECSTTCSHHHHHH----TTCCCSSCC
T ss_pred CEEEEEEeCccceeEEcCCCCcHHHHHH----HcCCCcceE
Confidence 3567777754456678888777766665 888887765
No 146
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=26.93 E-value=1.2e+02 Score=18.83 Aligned_cols=38 Identities=11% Similarity=0.177 Sum_probs=27.2
Q ss_pred CCCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCc
Q psy17656 18 LKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 18 ~~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~ 59 (85)
...+...+++...+|...++.+.+ |+.|++..-+. ++.
T Consensus 17 ~~~~M~~Vt~~~~~G~~~~v~~~~---G~tLL~aa~~~-gi~ 54 (126)
T 3hui_A 17 RGSHMAKINFVDHTGETRTVEVEE---GATVMEAAIRN-AIP 54 (126)
T ss_dssp TTCSEEEEEEECTTSCEEEEEEET---TSBHHHHHHTT-TCT
T ss_pred CCCCceEEEEEeCCCCEEEEEECC---CCcHHHHHHHc-CCC
Confidence 455677888877899888888865 78888866543 443
No 147
>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}
Probab=26.84 E-value=1.2e+02 Score=19.03 Aligned_cols=57 Identities=16% Similarity=0.091 Sum_probs=36.6
Q ss_pred CeEEEEEEec-----CCCEEEEEeccC-----------ccHhHHHHHHHhhc-CCcccceeeEEEecCCCCeecc
Q psy17656 21 KIEVAHITLL-----DGSLLDVTIERK-----------AKGEDLFDRVCDHL-NLLERDYFGLTYDNKYDPQCWL 78 (85)
Q Consensus 21 ~~~~~~V~LL-----D~t~~~~~v~~k-----------a~G~~Ll~~Vc~~L-~L~E~dYFGL~y~d~~~~~~WL 78 (85)
..+.+++.|+ ++....|.+... ..=..|.+.|-+-. +|.+. -|-|.|.|.+|-..++
T Consensus 19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~L~~~-~f~l~YkDEdGDlItI 92 (117)
T 2ktr_A 19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPALRPG-GFQAHYRAERGDLVAF 92 (117)
T ss_dssp -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTTSCSS-CEEEEEECTTCCEEEE
T ss_pred ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccccCCC-cEEEEEECCCCCEEEe
Confidence 3578888887 344556777521 14456666666666 45544 4999999988766554
No 148
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=25.46 E-value=1e+02 Score=17.68 Aligned_cols=52 Identities=12% Similarity=0.173 Sum_probs=40.1
Q ss_pred CCCCeEEEEEEe---cCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEEEec
Q psy17656 18 LKGKIEVAHITL---LDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDN 70 (85)
Q Consensus 18 ~~~~~~~~~V~L---LD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d 70 (85)
.....+.+.|.. +++...+..+.+..+=++|-..+.+..++.- ...=|.|.+
T Consensus 5 ~~~~~v~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~-~~q~L~~~~ 59 (97)
T 1wjn_A 5 SSGQLLTLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPV-SELLLSYES 59 (97)
T ss_dssp SSSCEEEEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCT-TTCEEEEEC
T ss_pred ccCccEEEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCCh-hHeEEEEEc
Confidence 355678887765 6788899999999999999999999998743 334466664
No 149
>2za4_B Barstar; protein-protein complex, endonuclease, genetically modified FOOD, hydrolase, nuclease, secreted, cytoplasm; 1.58A {Bacillus amyloliquefaciens} PDB: 1b27_D 1a19_A 1x1w_D 3da7_C 1ab7_A 1bgs_E 1brs_D 1x1u_D 1x1y_D 1b3s_D 1b2s_D 1x1x_D 1ay7_B 1bta_A 1btb_A 1b2u_D 2hxx_A*
Probab=24.88 E-value=67 Score=18.60 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=21.6
Q ss_pred EEEEeccCccHhHHHHHHHhhcCCcccceee
Q psy17656 35 LDVTIERKAKGEDLFDRVCDHLNLLERDYFG 65 (85)
Q Consensus 35 ~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFG 65 (85)
+.++...=..=.++++.+.+.+++. +|||
T Consensus 4 i~id~~~i~~~~~~~~~l~~~l~~P--~~fG 32 (90)
T 2za4_B 4 AVINGEQIRSISDLHQTLKKELALP--EYYG 32 (90)
T ss_dssp EEEEGGGCCSHHHHHHHHHHHTTCC--TTCC
T ss_pred EEEeCCCcCCHHHHHHHHHHHhCCC--cccC
Confidence 3444555556788999999999885 7888
No 150
>3e6q_A Putative 5-carboxymethyl-2-hydroxymuconate isomer; structural genomics, APC7683, isomerase, PSI-2, protein STRU initiative; HET: GOL IMD; 1.75A {Pseudomonas aeruginosa}
Probab=24.23 E-value=62 Score=20.84 Aligned_cols=46 Identities=20% Similarity=0.215 Sum_probs=33.1
Q ss_pred CCCeEEEEEEecCCCEEEEEeccCccHhHHHHHHHhhcCCcccceeeEE
Q psy17656 19 KGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67 (85)
Q Consensus 19 ~~~~~~~~V~LLD~t~~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~ 67 (85)
....+.+.|.++.|.. .-+++..++.|++.++++++-.-..++.|.
T Consensus 79 ~~~FVhV~i~ll~GRt---~EqK~~L~e~v~~al~~~l~~~~~~~~~ls 124 (146)
T 3e6q_A 79 ERAYLHACLSILDGRD---AATRQALGESLCEVLAGAVAGGGEEGVQVS 124 (146)
T ss_dssp CCCEEEEEEEEETTCC---HHHHHHHHHHHHHHHHHHEEECSSSCEEEE
T ss_pred CccEEEEEEEECCCCC---HHHHHHHHHHHHHHHHHHhCCccCCceEEE
Confidence 4567888888888876 345677899999999999985321344444
No 151
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=23.59 E-value=1.1e+02 Score=17.23 Aligned_cols=38 Identities=13% Similarity=0.090 Sum_probs=31.8
Q ss_pred CeEEEEEEecCCCEEEEEeccC-----ccHhHHHHHHHhhcCCc
Q psy17656 21 KIEVAHITLLDGSLLDVTIERK-----AKGEDLFDRVCDHLNLL 59 (85)
Q Consensus 21 ~~~~~~V~LLD~t~~~~~v~~k-----a~G~~Ll~~Vc~~L~L~ 59 (85)
..+.+.|.. .+..+.+++.+. ++-.+|-.++.+..++.
T Consensus 6 ~~~~v~Vk~-~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip 48 (92)
T 1wxv_A 6 SGLTVTVTH-SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVP 48 (92)
T ss_dssp SSEEEEEEC-SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCC
T ss_pred CeEEEEEEE-CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcC
Confidence 458888888 477889999985 88899999999998874
No 152
>3vpp_A C-type lectin domain family 9 member A; dendritic cell, C-type lectin-like domain, membrane, immune; 1.64A {Homo sapiens}
Probab=22.78 E-value=1.2e+02 Score=17.51 Aligned_cols=23 Identities=17% Similarity=0.238 Sum_probs=17.3
Q ss_pred cccceeeEEEecCCCCeeccccC
Q psy17656 59 LERDYFGLTYDNKYDPQCWLEMV 81 (85)
Q Consensus 59 ~E~dYFGL~y~d~~~~~~WLd~~ 81 (85)
...-..||......+...|.|-.
T Consensus 61 ~~~~WIGl~~~~~~~~w~W~dg~ 83 (132)
T 3vpp_A 61 SYDYWVGLSQDGHSGRWLWQDGS 83 (132)
T ss_dssp CCEEEEEEEECTTTCCEEETTSC
T ss_pred CccEEEEecccCCCCceEecCCC
Confidence 34457799988777888998743
No 153
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=22.15 E-value=1.9e+02 Score=19.56 Aligned_cols=37 Identities=8% Similarity=-0.015 Sum_probs=28.2
Q ss_pred EEEEeccCccHhHHHHHHHhhcCCcccceeeEEEecC
Q psy17656 35 LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNK 71 (85)
Q Consensus 35 ~~~~v~~ka~G~~Ll~~Vc~~L~L~E~dYFGL~y~d~ 71 (85)
+.+.+.+.++-++|++.||+.++|....-+=|..+..
T Consensus 154 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~ 190 (231)
T 3jyu_A 154 LSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYM 190 (231)
T ss_dssp EEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSS
T ss_pred EEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecC
Confidence 4466789999999999999999996544455665543
No 154
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=20.24 E-value=2e+02 Score=19.17 Aligned_cols=27 Identities=0% Similarity=0.084 Sum_probs=23.2
Q ss_pred EEEEeccCccHhHHHHHHHhhcCCccc
Q psy17656 35 LDVTIERKAKGEDLFDRVCDHLNLLER 61 (85)
Q Consensus 35 ~~~~v~~ka~G~~Ll~~Vc~~L~L~E~ 61 (85)
..+.+.+..+-++|++.||+.+++...
T Consensus 142 ~~~~~Sk~~ti~~l~~~~~~~~~i~~~ 168 (217)
T 4a3p_A 142 VTRRFSKADTIDTIEKEIRKIFSIPDE 168 (217)
T ss_dssp EEEEECTTSBHHHHHHHHHHHTTCCTT
T ss_pred eEEEEcccchHHHHHHHHHHHhCCCCC
Confidence 557789999999999999999999643
Done!