RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17656
(85 letters)
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural
genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A
3bin_A 2he7_A 2rq1_A
Length = 296
Score = 77.3 bits (190), Expect = 5e-19
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
++LLD ++ + +E+ AKG+DL RVC+HLNLLE DYFGL + + WL+
Sbjct: 21 KVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDS 75
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein;
1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4
PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A
2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Length = 294
Score = 70.4 bits (172), Expect = 2e-16
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
+T +D L + I+ G+ LFD+V + L E +FGL Y + WL++
Sbjct: 5 RVTTMDAEL-EFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL 58
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER
actin binding, masking, regulation, SELF-inhibition,
cell A membrane protein; 2.10A {Spodoptera frugiperda}
PDB: 2i1k_A 1e5w_A
Length = 575
Score = 66.5 bits (161), Expect = 9e-15
Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 13 PKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKY 72
PK+ ++ +T +D L + I++ G+ LFD+V + L E +FGL Y +
Sbjct: 2 PKSMNVR-------VTTMDAEL-EFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSK 53
Query: 73 DPQCWLEM 80
W+++
Sbjct: 54 GDLTWIKL 61
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein,
cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Length = 314
Score = 63.8 bits (155), Expect = 5e-14
Identities = 26/73 (35%), Positives = 36/73 (49%), Gaps = 5/73 (6%)
Query: 8 TESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLT 67
+ S+ + +P K I +D + + E K KG+DLFD VC L L E +FGL
Sbjct: 11 SFSSLKRKQP---KTFTVRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQ 66
Query: 68 YDNKYDPQCWLEM 80
Y D WL+M
Sbjct: 67 YT-IKDTVAWLKM 78
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton,
M phosphoprotein, cell adhesion, structural protein;
1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Length = 371
Score = 62.2 bits (151), Expect = 2e-13
Identities = 14/73 (19%), Positives = 28/73 (38%), Gaps = 4/73 (5%)
Query: 12 PPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY--- 68
T + K I +LDG++ + ++ D+ +C + + D + L
Sbjct: 75 NGDTMEYRKKQRPLKIRMLDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELM 134
Query: 69 -DNKYDPQCWLEM 80
+ K D WL+
Sbjct: 135 EEKKDDELNWLDH 147
>4dxa_B KREV interaction trapped protein 1; GTPase, FERM, protein-protein
interaction, GTP binding, CYTO protein binding; HET:
GSP; 1.95A {Homo sapiens}
Length = 322
Score = 46.9 bits (111), Expect = 6e-08
Identities = 8/63 (12%), Positives = 25/63 (39%), Gaps = 11/63 (17%)
Query: 11 APPKTKPLKGKIEVAHITLLDGSL--LDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTY 68
P+ + ++ I +DGS +++ + + + + L+ + YF +
Sbjct: 1 GSPEFEKVR-------IYRMDGSYRSVELKHGNNTTVQQIMEGM--RLSQETQQYFTIWI 51
Query: 69 DNK 71
++
Sbjct: 52 CSE 54
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein
cargo binding, cargo proteins, motor protein-protein
transport complex; 2.80A {Mus musculus}
Length = 655
Score = 46.5 bits (109), Expect = 1e-07
Identities = 9/54 (16%), Positives = 20/54 (37%)
Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
+T +DG+ + + +L + + D ++L +R F L
Sbjct: 267 PVTFMDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYIALFDKVSSLGS 320
>3au4_A Myosin-X; protein-protein complex, motor protein cargo
transportation, protein-apoptosis complex; 1.90A {Homo
sapiens} PDB: 3au5_A 3pzd_A
Length = 555
Score = 42.2 bits (98), Expect = 4e-06
Identities = 5/53 (9%), Positives = 17/53 (32%)
Query: 27 ITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLE 79
+ G +TI ++ +++ L + + ++ +E
Sbjct: 221 VYCHGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFEYNGHVDKAIE 273
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens}
SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A
3kyc_D* 3rzw_C
Length = 97
Score = 27.2 bits (60), Expect = 0.31
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 9 ESAPPKTKPLKGKIEVAHITL----LDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYF 64
+ A P T+ L K E +I L D S + ++ + L + C + +
Sbjct: 4 QEAKPSTEDLGDKKEGEYIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQG-VPMNSL 62
Query: 65 GLTYDNK 71
++ +
Sbjct: 63 RFLFEGQ 69
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 27.7 bits (61), Expect = 0.47
Identities = 8/36 (22%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 46 EDLFDRVCDHLNLLERDYFGLT--YDNKYDPQCWLE 79
DL + L+ L R + + WLE
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Score = 26.6 bits (58), Expect = 1.3
Identities = 9/67 (13%), Positives = 24/67 (35%), Gaps = 30/67 (44%)
Query: 43 AKGEDLFDRVCDHL------NLLE--RD-------YFG-------------LTYDNKYDP 74
A+ D+++R +H ++L+ + +FG + ++ D
Sbjct: 1642 AQ--DVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 75 QCWLEMV 81
+ E +
Sbjct: 1700 KLKTEKI 1706
>2ija_A Arylamine N-acetyltransferase 1; arylamide acetylase 1, structural
genomics, structural genomics consortium, SGC; 1.70A
{Homo sapiens} PDB: 2pqt_A* 2pfr_A*
Length = 295
Score = 27.4 bits (60), Expect = 0.51
Identities = 6/54 (11%), Positives = 18/54 (33%), Gaps = 2/54 (3%)
Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLE--RDYFGLTYDNKYDPQCW 77
L+ +L K + + + + + ++ F ++ K P+
Sbjct: 236 VHCLVGFTLTHRRFNYKDNTDLIEFKTLSEEEIEKVLKNIFNISLQRKLVPKHG 289
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 0.60
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 33 SLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEMVNY 83
S+ + +E K K E+ + H ++++ T+D+ +L+ Y
Sbjct: 427 SIPSIYLELKVKLENEYAL---HRSIVDHYNIPKTFDSDDLIPPYLD--QY 472
>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding,
hydrolase, ION transp magnesium, Cu+, membrane,
metal-binding; 3.20A {Legionella pneumophila subsp}
Length = 736
Score = 26.4 bits (59), Expect = 1.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 22 IEVAHITLLDGSLLDV 37
IE A +TLL G L +
Sbjct: 649 IESAGVTLLHGDLRGI 664
>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 645
Score = 25.9 bits (58), Expect = 1.6
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 22 IEVAHITLLDGSLLDV 37
+E I L+ L DV
Sbjct: 551 VESGDIVLIRDDLRDV 566
>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter,
adenosine triphosph archaeal proteins, cation transport
proteins; 10.00A {Archaeoglobus fulgidus}
Length = 723
Score = 25.9 bits (58), Expect = 1.9
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 22 IEVAHITLLDGSLLDV 37
+E I L+ L DV
Sbjct: 629 VESGDIVLIRDDLRDV 644
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 25.7 bits (57), Expect = 2.0
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 39 IERKAKGEDLFDRVCDHLNLLE---RDYF 64
+ER +DLFD + + L E R +F
Sbjct: 117 LERPLPAQDLFDYITEKGPLGEGPSRCFF 145
>2haf_A Putative translation repressor; alpha/beta, X-RAY
crystallography, structural genomics, PSI, protein
structure initiative; 2.88A {Vibrio cholerae} SCOP:
d.310.1.1 PDB: 2aj2_A
Length = 211
Score = 25.2 bits (55), Expect = 2.3
Identities = 5/32 (15%), Positives = 13/32 (40%)
Query: 1 MTMTEIDTESAPPKTKPLKGKIEVAHITLLDG 32
M+++ ++ + L VA ++ D
Sbjct: 1 MSLSNHSSDIEVGHSMNLTNHFLVAMPSMKDP 32
>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy
metal translocation; 2.20A {Sulfolobus solfataricus}
PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*
Length = 263
Score = 25.1 bits (56), Expect = 2.7
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 22 IEVAHITLLDGSLLDV 37
VA I L+ + +
Sbjct: 231 KNVADIILVSNDIGTL 246
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling,
transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A
3zuu_A 3uc4_A 3ujg_A 3udb_A
Length = 361
Score = 25.0 bits (55), Expect = 2.9
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 3/25 (12%)
Query: 43 AKGEDLFDRVCDHLNLLE---RDYF 64
A G +L++R+C+ E R +F
Sbjct: 98 ASGGELYERICNAGRFSEDEARFFF 122
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS
antifolate complex, methyltransfe multifunctional
enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB:
3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A*
3kjs_A*
Length = 521
Score = 24.8 bits (54), Expect = 4.4
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 9 ESAPPKTKPLKGKIEV 24
+S PPK +PL G++ V
Sbjct: 82 DSIPPKFRPLPGRLNV 97
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 24.5 bits (53), Expect = 5.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Query: 9 ESAPPKTKPLKGKIEV 24
ES P K KPL +I V
Sbjct: 110 ESIPKKFKPLSNRINV 125
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural
genomics, seattle structural genomics center for
infectious disease, ssgcid, niaid, DHFR; HET: NAP D16
UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Length = 515
Score = 24.4 bits (53), Expect = 5.5
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 9 ESAPPKTKPLKGKIEV 24
ES P + PLK +I V
Sbjct: 75 ESIPKASLPLKNRINV 90
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 24.3 bits (53), Expect = 6.0
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 43 AKGEDLFDRVCDHLNLLERD 62
+G +LFD+V + L E
Sbjct: 221 MEGGELFDKVVGNKRLKEAT 240
>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell
membrane, copper transport, hydrolase, ION transport,
magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus
fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I
Length = 287
Score = 24.0 bits (53), Expect = 6.4
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 22 IEVAHITLLDGSLLDV 37
+E I L+ L DV
Sbjct: 257 VESGDIVLIRDDLRDV 272
>2al6_A Focal adhesion kinase 1; transferase; 2.35A {Gallus gallus} SCOP:
a.11.2.1 b.55.1.5 d.15.1.4 PDB: 2j0m_A* 2aeh_A
Length = 375
Score = 24.0 bits (51), Expect = 7.5
Identities = 5/50 (10%), Positives = 13/50 (26%), Gaps = 1/50 (2%)
Query: 30 LDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQC-WL 78
+ + ++ D + +GL + + WL
Sbjct: 19 PTTWASIIRHGDATDVRGIIQKIVDCHKVKNVACYGLRLSHLQSEEVHWL 68
>1a9x_B Carbamoyl phosphate synthetase (small chain); amidotransferase,
thioester; HET: CYG ADP; 1.80A {Escherichia coli} SCOP:
c.8.3.1 c.23.16.1 PDB: 1bxr_B* 1ce8_B* 1jdb_C* 1cs0_B*
1m6v_B* 1c30_B* 1c3o_B* 1kee_B* 1t36_B*
Length = 379
Score = 24.0 bits (53), Expect = 7.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 18 LKGKIEVAHITLLDGSL 34
L + V H +L DG+L
Sbjct: 320 LPANLRVTHKSLFDGTL 336
>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain,
copper(II) transporter, MEMB protein, hydrolase; 1.59A
{Archaeoglobus fulgidus} PDB: 3sky_A*
Length = 280
Score = 24.0 bits (53), Expect = 8.0
Identities = 6/16 (37%), Positives = 8/16 (50%)
Query: 22 IEVAHITLLDGSLLDV 37
+E A I L+ DV
Sbjct: 238 VETADIVLVRNDPRDV 253
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer,
anticancer drug design; HET: YCF; 1.77A {Homo sapiens}
PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A*
2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A*
2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Length = 322
Score = 23.8 bits (52), Expect = 9.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 43 AKGEDLFDRVCDHLNLLERD 62
+G +LFD+V + L E
Sbjct: 96 MEGGELFDKVVGNKRLKEAT 115
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.139 0.420
Gapped
Lambda K H
0.267 0.0570 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,362,336
Number of extensions: 70465
Number of successful extensions: 187
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 39
Length of query: 85
Length of database: 6,701,793
Length adjustment: 53
Effective length of query: 32
Effective length of database: 5,221,980
Effective search space: 167103360
Effective search space used: 167103360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.8 bits)