RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17656
         (85 letters)



>d1gg3a3 d.15.1.4 (A:1-81) Erythroid membrane protein 4.1R {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 81

 Score = 79.4 bits (196), Expect = 4e-22
 Identities = 25/55 (45%), Positives = 37/55 (67%)

Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
           ++LLD ++ +  +E+ AKG+DL  RVC+HLNLLE DYFGL   +    + WL+ 
Sbjct: 4  KVSLLDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDS 58


>d1ef1a3 d.15.1.4 (A:4-87) Moesin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 84

 Score = 74.4 bits (183), Expect = 5e-20
 Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)

Query: 26 HITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
           +T +D  L +  I+    G+ LFD+V   + L E  +FGL Y +      WL++
Sbjct: 5  RVTTMDAEL-EFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL 58


>d1h4ra3 d.15.1.4 (A:20-103) Merlin {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 84

 Score = 72.0 bits (177), Expect = 3e-19
 Identities = 25/60 (41%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 21 KIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNLLERDYFGLTYDNKYDPQCWLEM 80
          K     I  +D  + +   E K KG+DLFD VC  L L E  +FGL Y  K D   WL+M
Sbjct: 1  KTFTVRIVTMDAEM-EFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIK-DTVAWLKM 58


>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 77

 Score = 23.5 bits (51), Expect = 2.5
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 4/37 (10%)

Query: 26 HITL----LDGSLLDVTIERKAKGEDLFDRVCDHLNL 58
          +I L     D S +   ++     + L +  C    +
Sbjct: 2  YIKLKVIGQDSSEIHFKVKMTTHLKKLKESYCQRQGV 38


>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis
           [TaxId: 1423]}
          Length = 186

 Score = 24.0 bits (51), Expect = 2.6
 Identities = 9/55 (16%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 4   TEIDTESAPPKTKPLKGKIEVAHITLLDGSLLDVTIERKAKGEDLFDRVCDHLNL 58
            +  +  +    +P+    E   +   D  +L +  ++    E +F     H NL
Sbjct: 134 PKDQSNGSYKTIQPMGSLFEQTLLLFYDAVILKLMEKKGLDSETMFTH---HANL 185


>d1wm3a_ d.15.1.1 (A:) SUMO-2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 72

 Score = 23.1 bits (50), Expect = 2.7
 Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 4/37 (10%)

Query: 26 HITL----LDGSLLDVTIERKAKGEDLFDRVCDHLNL 58
          HI L     DGS++   I+R      L    C+   L
Sbjct: 1  HINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGL 37


>d1jd1a_ d.79.1.1 (A:) Highdosage growth inhibitor YER057cp
          (YEO7_YEAST) {Baker's yeast (Saccharomyces cerevisiae)
          [TaxId: 4932]}
          Length = 126

 Score = 23.6 bits (50), Expect = 3.2
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 1/82 (1%)

Query: 2  TMTEIDTESAPPKTKPLKGKIEVAHITLLDGSL-LDVTIERKAKGEDLFDRVCDHLNLLE 60
          T+T +  ESAP         ++V ++  L G + +    +                    
Sbjct: 2  TLTPVICESAPAAAASYSHAMKVNNLIFLSGQIPVTPDNKLVEGSIADKAEQVIQNIKNV 61

Query: 61 RDYFGLTYDNKYDPQCWLEMVN 82
           +    + D       +L  +N
Sbjct: 62 LEASNSSLDRVVKVNIFLADIN 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.139    0.420 

Gapped
Lambda     K      H
   0.267   0.0674    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 336,394
Number of extensions: 13553
Number of successful extensions: 41
Number of sequences better than 10.0: 1
Number of HSP's gapped: 41
Number of HSP's successfully gapped: 10
Length of query: 85
Length of database: 2,407,596
Length adjustment: 50
Effective length of query: 35
Effective length of database: 1,721,096
Effective search space: 60238360
Effective search space used: 60238360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.0 bits)