BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17657
(652 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QF2|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QF2|B Chain B, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid And
Gdp.
pdb|2QEW|A Chain A, Rat Cytosolic Pepck, In Complex With Manganese Ion.
pdb|2QEY|A Chain A, Rat Cytosolic Pepck In Complex With Gtp
pdb|2QF1|A Chain A, Rat Cytosolic Pepck In Complex With Oxaloacetic Acid.
pdb|2RK7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate
pdb|2RK8|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RK8|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphonoformate
pdb|2RKA|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKA|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate
pdb|2RKD|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With 3-
Phosphonopropionate
pdb|2RKE|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Sulfoacetate.
pdb|3DT2|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT4|C Chain C, The Structure Of Rat Cytosolic Pepck In Complex With
Oxalate And Gtp
pdb|3DT7|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DT7|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With Beta-
Sulfopyruvate And Gtp
pdb|3DTB|A Chain A, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
pdb|3DTB|B Chain B, The Structure Of Rat Cytosolic Pepck In Complex With
Phosphoglycolate And Gdp
Length = 624
Score = 743 bits (1919), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/617 (58%), Positives = 447/617 (72%), Gaps = 20/617 (3%)
Query: 29 LVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVN 88
++ G L S+ ++ KF+ +A LC+P+ IHICDG+EEE +L M + +++++K+ N
Sbjct: 17 VIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDN 76
Query: 89 CWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGC 148
CWLA T+P DVAR+E KT I T + D VP K G +SQLG W+S D+++A RFPGC
Sbjct: 77 CWLALTDPRDVARIESKTVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGC 135
Query: 149 MKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRA 208
MK RTMYVIPFSMGP+GSPL+K+G+E+TDSPYVVASMRIMTRMG +VL+ + + EF++
Sbjct: 136 MKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALG-DGEFIKC 194
Query: 209 LHSVGTPSSGVHEYPH-WPCDPQRTIILHKPDTMEIAXXXXXXXXXXXXXKKCFALRINQ 267
LHSVG P + W C+P+ T+I H PD EI KKCFALRI
Sbjct: 195 LHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIAS 254
Query: 268 --VKEP-----NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320
KE + ILG+TNPEGKK ++AAAFPSACGKTNLAM+ PTL WKVECVGDDI
Sbjct: 255 RLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDI 314
Query: 321 AWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEG 380
AWMKFD +GNLRAINPE+GFFGVAPGTS TNP A++TI NT+FTNV TSD GVYWEG
Sbjct: 315 AWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEG 374
Query: 381 LEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAII 440
++E P TI W + W P AHPNSRFC PA++CP +DP W+SP+GVPI II
Sbjct: 375 IDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGII 434
Query: 441 FGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQ 500
FGGRRP GVPLVYEA WQHGVFVGA+MRSEATAAAEHKGK I++DPFAMRPFFGYNFG+
Sbjct: 435 FGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKVIMHDPFAMRPFFGYNFGK 494
Query: 501 YLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRR 560
YL HWL + RP KLPKIFHVNWFRKDK+GKF+WPGFG+N RVL+W+F R+ G + +
Sbjct: 495 YLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSA-K 553
Query: 561 FSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGS 620
+PIGY+P + +NL L +VN++ELF I K+FWE+E+ I+KY DQV +
Sbjct: 554 LTPIGYVP--KEDALNLKGLG-------DVNVEELFGISKEFWEKEVEEIDKYLEDQVNA 604
Query: 621 DLPPAIHAEISGLRQRL 637
DLP I E+ L+QR+
Sbjct: 605 DLPYEIERELRALKQRI 621
>pdb|3MOE|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Beta-Sulfopyruvate And Gtp
pdb|3MOF|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOF|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Oxalate And Gtp
pdb|3MOH|A Chain A, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
pdb|3MOH|B Chain B, The Structure Of Rat Cytosolic Pepck Mutant A467g In
Complex With Phosphoglycolate And Gdp
Length = 624
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/617 (58%), Positives = 446/617 (72%), Gaps = 20/617 (3%)
Query: 29 LVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVN 88
++ G L S+ ++ KF+ +A LC+P+ IHICDG+EEE +L M + +++++K+ N
Sbjct: 17 VIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDN 76
Query: 89 CWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGC 148
CWLA T+P DVAR+E KT I T + D VP K G +SQLG W+S D+++A RFPGC
Sbjct: 77 CWLALTDPRDVARIESKTVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGC 135
Query: 149 MKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRA 208
MK RTMYVIPFSMGP+GSPL+K+G+E+TDSPYVVASMRIMTRMG +VL+ + + EF++
Sbjct: 136 MKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALG-DGEFIKC 194
Query: 209 LHSVGTPSSGVHEYPH-WPCDPQRTIILHKPDTMEIAXXXXXXXXXXXXXKKCFALRINQ 267
LHSVG P + W C+P+ T+I H PD EI KKCFALRI
Sbjct: 195 LHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIAS 254
Query: 268 --VKEP-----NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320
KE + ILG+TNPEGKK ++AAAFPSACGKTNLAM+ PTL WKVECVGDDI
Sbjct: 255 RLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDI 314
Query: 321 AWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEG 380
AWMKFD +GNLRAINPE+GFFGVAPGTS TNP A++TI NT+FTNV TSD GVYWEG
Sbjct: 315 AWMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEG 374
Query: 381 LEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAII 440
++E P TI W + W P AHPNSRFC PA++CP +DP W+SP+GVPI II
Sbjct: 375 IDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGII 434
Query: 441 FGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQ 500
FGGRRP GVPLVYEA WQHGVFVGA+MRSEATA AEHKGK I++DPFAMRPFFGYNFG+
Sbjct: 435 FGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAGAEHKGKVIMHDPFAMRPFFGYNFGK 494
Query: 501 YLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRR 560
YL HWL + RP KLPKIFHVNWFRKDK+GKF+WPGFG+N RVL+W+F R+ G + +
Sbjct: 495 YLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSA-K 553
Query: 561 FSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGS 620
+PIGY+P + +NL L +VN++ELF I K+FWE+E+ I+KY DQV +
Sbjct: 554 LTPIGYVP--KEDALNLKGLG-------DVNVEELFGISKEFWEKEVEEIDKYLEDQVNA 604
Query: 621 DLPPAIHAEISGLRQRL 637
DLP I E+ L+QR+
Sbjct: 605 DLPYEIERELRALKQRI 621
>pdb|1KHB|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Native Data
pdb|1KHF|A Chain A, Pepck Complex With Pep
pdb|1KHG|A Chain A, Pepck
pdb|1M51|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|1NHX|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|A Chain A, Pepck Complex With A Gtp-Competitive Inhibitor
pdb|2GMV|B Chain B, Pepck Complex With A Gtp-Competitive Inhibitor
Length = 625
Score = 738 bits (1904), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 360/619 (58%), Positives = 448/619 (72%), Gaps = 24/619 (3%)
Query: 29 LVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVN 88
+V G L S+ + +F+ +A LC+P IHICDG+EEEN +L +M + ++R++K+ N
Sbjct: 18 VVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDN 77
Query: 89 CWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGC 148
CWLA T+P DVAR+E KT I T + D VP K G+ SQLG W+S D+++A RFPGC
Sbjct: 78 CWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGC 136
Query: 149 MKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRA 208
MK RTMYVIPFSMGP+GSPLSK+G+E+TDSPYVVASMRIMTRMG VL+ + + EFV+
Sbjct: 137 MKGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEALG-DGEFVKC 195
Query: 209 LHSVGTPSSGVHEYP---HWPCDPQRTIILHKPDTMEIAXXXXXXXXXXXXXKKCFALRI 265
LHSVG P + P +WPC+P+ T+I H PD EI KKCFALR+
Sbjct: 196 LHSVGCPLP--LQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRM 253
Query: 266 NQ--VKEP-----NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGD 318
KE + +LG+TNPEG+K ++AAAFPSACGKTNLAM+ P+L WKVECVGD
Sbjct: 254 ASRLAKEEGWLAEHMLVLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGD 313
Query: 319 DIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYW 378
DIAWMKFD +G+LRAINPE+GFFGVAPGTS TNP A++TI NT+FTNV TSD GVYW
Sbjct: 314 DIAWMKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYW 373
Query: 379 EGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISA 438
EG++E TI W + W+ P AHPNSRFC PA++CP +D W+SP+GVPI
Sbjct: 374 EGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEG 433
Query: 439 IIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNF 498
IIFGGRRP GVPLVYEA WQHGVFVGA+MRSEATAAAEHKGK I++DPFAMRPFFGYNF
Sbjct: 434 IIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNF 493
Query: 499 GQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTV 558
G+YL HWL + + P KLPKIFHVNWFRKDK+GKF+WPGFG+N RVL+W+F R++G K
Sbjct: 494 GKYLAHWLSMAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDG-KAS 552
Query: 559 RRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQV 618
+ +PIGYIP + +NL L ++N+ ELF I K+FW++E+ IEKY DQV
Sbjct: 553 TKLTPIGYIP--KEDALNLKGLG-------HINMMELFSISKEFWDKEVEDIEKYLVDQV 603
Query: 619 GSDLPPAIHAEISGLRQRL 637
+DLP I EI L+QR+
Sbjct: 604 NADLPCEIEREILALKQRI 622
>pdb|1KHE|A Chain A, Pepck Complex With Nonhydrolyzable Gtp Analog, Mad Data
Length = 625
Score = 701 bits (1810), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 349/619 (56%), Positives = 430/619 (69%), Gaps = 24/619 (3%)
Query: 29 LVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVN 88
+V G L S+ + +F+ +A LC+P IHICDG+EEEN +L + + ++R++K+ N
Sbjct: 18 VVQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQXEEEGILRRLKKYDN 77
Query: 89 CWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGC 148
CWLA T+P DVAR+E KT I T + D VP K G+ SQLG W S D+++A RFPGC
Sbjct: 78 CWLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWXSEEDFEKAFNARFPGC 136
Query: 149 MKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRA 208
K RT YVIPFS GP+GSPLSK+G+E+TDSPYVVAS RI TR G VL+ + + EFV+
Sbjct: 137 XKGRTXYVIPFSXGPLGSPLSKIGIELTDSPYVVASXRIXTRXGTPVLEALG-DGEFVKC 195
Query: 209 LHSVGTPSSGVHEYP---HWPCDPQRTIILHKPDTMEIAXXXXXXXXXXXXXKKCFALRI 265
LHSVG P + P +WPC+P+ T+I H PD EI KKCFALR
Sbjct: 196 LHSVGCPLP--LQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRX 253
Query: 266 NQ--VKEP-----NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGD 318
KE + +LG+TNPEG+K ++AAAFPSACGKTNLA P+L WKVECVGD
Sbjct: 254 ASRLAKEEGWLAEHXLVLGITNPEGEKKYLAAAFPSACGKTNLAXXNPSLPGWKVECVGD 313
Query: 319 DIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYW 378
DIAW KFD +G+LRAINPE+GFFGVAPGTS TNP A++TI NT+FTNV TSD GVYW
Sbjct: 314 DIAWXKFDAQGHLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYW 373
Query: 379 EGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISA 438
EG++E TI W + W+ P AHPNSRFC PA++CP +D W+SP+GVPI
Sbjct: 374 EGIDEPLASGVTITSWKNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEG 433
Query: 439 IIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNF 498
IIFGGRRP GVPLVYEA WQHGVFVGA+ RSEATAAAEHKGK I +DPFA RPFFGYNF
Sbjct: 434 IIFGGRRPAGVPLVYEALSWQHGVFVGAAXRSEATAAAEHKGKIIXHDPFAXRPFFGYNF 493
Query: 499 GQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTV 558
G+YL HWL + P KLPKIFHVNWFRKDK+GKF+WPGFG+N RVL+W F R++G K
Sbjct: 494 GKYLAHWLSXAQHPAAKLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWXFNRIDG-KAS 552
Query: 559 RRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQV 618
+ +PIGYIP + +NL L ++N ELF I K+FW++E+ IEKY DQV
Sbjct: 553 TKLTPIGYIP--KEDALNLKGLG-------HINXXELFSISKEFWDKEVEDIEKYLVDQV 603
Query: 619 GSDLPPAIHAEISGLRQRL 637
+DLP I EI L+QR+
Sbjct: 604 NADLPCEIEREILALKQRI 622
>pdb|2FAF|A Chain A, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAF|B Chain B, The Structure Of Chicken Mitochondrial Pepck.
pdb|2FAH|A Chain A, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|B Chain B, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|C Chain C, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2FAH|D Chain D, The Structure Of Mitochondrial Pepck, Complex With Mn And
Gdp
pdb|2QZY|A Chain A, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
pdb|2QZY|B Chain B, The Structure Of Chicken Mitochondrial Pepck In Complex
With Pep
Length = 608
Score = 676 bits (1745), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 330/614 (53%), Positives = 416/614 (67%), Gaps = 21/614 (3%)
Query: 34 LSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLAS 93
LS++ F+ E+ LC+P+++ +CDG+EEE K +L+ + D + + K+ NCWLA
Sbjct: 5 LSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLAR 64
Query: 94 TNPADVARVEDKTFICTVNRSDVVPDHKPGVKS-QLGNWISPADYDEAIKTRFPGCMKDR 152
T+P DVARVE KT + T +SD VP P QLGNW+SP + A++ RFPGCM R
Sbjct: 65 TDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGCMAGR 124
Query: 153 TMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRALHSV 212
+YVIPFSMGP SPL+K+GV++TDSPYVV SMRIMTR+G AVL + +D+FVR LHSV
Sbjct: 125 PLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVGPAVLQRL--DDDFVRCLHSV 182
Query: 213 GTPSSGVHEY-PHWPCDPQRTIILHKPDTMEIAXXXXXXXXXXXXXKKCFALRINQVKEP 271
G P WPCDP R ++ H P I KKCFALRI
Sbjct: 183 GRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASRMAQ 242
Query: 272 NN-------RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMK 324
ILGVT+P G+K ++AAAFPSACGKTNLAM+ P+L W++ CVGDDIAWMK
Sbjct: 243 QQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMK 302
Query: 325 FDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEE 384
FD+EG LRAINPE GFFGVAPGTS TNP AM TI NT+FTNVG SD GVYW+GL+E
Sbjct: 303 FDDEGRLRAINPERGFFGVAPGTSSRTNPNAMATIARNTIFTNVGLRSDGGVYWDGLDEP 362
Query: 385 TNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGR 444
T P T WLG+PW P AHPNSRFC PA +CP MDP W P+GVPI AIIFGGR
Sbjct: 363 TEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQCPIMDPRWDDPEGVPIDAIIFGGR 422
Query: 445 RPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQH 504
RP GVPLV EAF W+HGVF+G++MRSEATAAAEHKG +++DPFAMRPFFGYN G+YL+H
Sbjct: 423 RPRGVPLVVEAFGWRHGVFMGSAMRSEATAAAEHKGGRLMHDPFAMRPFFGYNAGRYLEH 482
Query: 505 WLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPI 564
WL R N +LP++FHVNWF +D +G+F+WPGFG N RVL WIF R+ G T R +PI
Sbjct: 483 WLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWIFGRIQGRDTARP-TPI 541
Query: 565 GYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPP 624
G++P ++L L V+ +LF ++K FWE+E + +Y+ + G+DLP
Sbjct: 542 GWVP--KEGDLDLGGLP-------GVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPR 592
Query: 625 AIHAEISGLRQRLK 638
+ AE+ GL +R++
Sbjct: 593 DVMAELEGLEERVR 606
>pdb|2ZCI|A Chain A, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|B Chain B, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|C Chain C, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
pdb|2ZCI|D Chain D, Structure Of A Gtp-Dependent Bacterial Pep-Carboxykinase
From Corynebacterium Glutamicum
Length = 610
Score = 481 bits (1237), Expect = e-136, Method: Compositional matrix adjust.
Identities = 258/623 (41%), Positives = 360/623 (57%), Gaps = 33/623 (5%)
Query: 30 VHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRV--RKHV 87
+ G+ + + +LL +I ++ L +P+ + DG++ E + + +V+ T+ ++ K
Sbjct: 9 LQGEAPTKNKELLNWIADAVELFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRP 68
Query: 88 NCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPG 147
N +LA +NP+DVARVE +TFIC+ D P + NW P + + + G
Sbjct: 69 NSYLARSNPSDVARVESRTFICSEKEEDAGPTN---------NWAPPQAMKDEMSKHYAG 119
Query: 148 CMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVR 207
MK RTMYV+PF MGP+ P K+GV++TDS YVV SMRIMTRMG LD+I N FVR
Sbjct: 120 SMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMGIEALDKIGANGSFVR 179
Query: 208 ALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIAXXXXXXXXXXXXXKKCFALRINQ 267
LHSVG P E WPC+ + I P+T EI KKC+ALRI
Sbjct: 180 CLHSVGAPLEPGQEDVAWPCNDTK-YITQFPETKEIWSYGSGYGGNAILAKKCYALRIAS 238
Query: 268 VKEPNN-------RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320
V IL + NPEGK +AAAFPSACGKTNLAM+ PT+ W + VGDDI
Sbjct: 239 VMAREEGWMAEHMLILKLINPEGKAYHIAAAFPSACGKTNLAMITPTIPGWTAQVVGDDI 298
Query: 321 AWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIF-HNTMFTNVGTTSDDGVYWE 379
AW+K E+G L A+NPE+GFFGVAPGT+ +NP AM+T+ NT+FTNV T D ++WE
Sbjct: 299 AWLKLREDG-LYAVNPENGFFGVAPGTNYASNPIAMKTMEPGNTLFTNVALTDDGDIWWE 357
Query: 380 GLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAI 439
G++ + A + DW+G W AAHPNSR+CV + PA P++ +GV I AI
Sbjct: 358 GMDGDA--PAHLIDWMGNDWTPESDENAAHPNSRYCVAIDQSPAAAPEFNDWEGVKIDAI 415
Query: 440 IFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAA-AEHKGKAILNDPFAMRPFFGYNF 498
+FGGRR + VPLV + +DW+HG VGA + S TAA AE K + +DP AM PF GYN
Sbjct: 416 LFGGRRADTVPLVTQTYDWEHGTMVGALLASGQTAASAEAKVGTLRHDPMAMLPFIGYNA 475
Query: 499 GQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTV 558
G+YLQ+W+D+ + K+P IF VNWFR+ +DG+F+WPGFGDN RVL W+ R+ G+
Sbjct: 476 GEYLQNWIDMGNKGGDKMPSIFLVNWFRRGEDGRFLWPGFGDNSRVLKWVIDRIEGH--- 532
Query: 559 RRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQV 618
+G + DL D ++KE + W ++ +Y +
Sbjct: 533 -----VGADETVVGHTAKAEDLDLDGLDTPIEDVKEALTAPAEQWANDVEDNAEYLT-FL 586
Query: 619 GSDLPPAIHAEISGLRQRLKSYH 641
G +P +H++ L+ R+ + H
Sbjct: 587 GPRVPAEVHSQFDALKARISAAH 609
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,219,354
Number of Sequences: 62578
Number of extensions: 945056
Number of successful extensions: 2347
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2309
Number of HSP's gapped (non-prelim): 11
length of query: 652
length of database: 14,973,337
effective HSP length: 105
effective length of query: 547
effective length of database: 8,402,647
effective search space: 4596247909
effective search space used: 4596247909
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)