Query psy17657
Match_columns 652
No_of_seqs 159 out of 457
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 19:38:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17657.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17657hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3749|consensus 100.0 2E-268 4E-273 2091.1 47.9 618 8-640 15-640 (640)
2 PRK04210 phosphoenolpyruvate c 100.0 9E-266 2E-270 2126.7 56.0 584 36-640 8-601 (601)
3 PF00821 PEPCK: Phosphoenolpyr 100.0 1E-266 2E-271 2138.2 44.0 577 43-639 1-586 (586)
4 cd00819 PEPCK_GTP Phosphoenolp 100.0 5E-261 1E-265 2086.2 53.6 569 41-633 1-579 (579)
5 COG1274 PckA Phosphoenolpyruva 100.0 8E-259 2E-263 2028.1 49.1 591 27-638 6-607 (608)
6 cd01919 PEPCK Phosphoenolpyruv 100.0 2E-116 4E-121 958.0 39.2 490 55-619 1-504 (515)
7 cd00820 PEPCK_HprK Phosphoenol 99.7 1.1E-17 2.4E-22 151.2 3.0 64 272-342 6-69 (107)
8 PTZ00311 phosphoenolpyruvate c 99.6 2.5E-11 5.4E-16 135.0 36.7 478 52-628 39-554 (561)
9 PRK09344 phosphoenolpyruvate c 99.5 1.7E-11 3.6E-16 136.1 33.7 471 51-628 13-521 (526)
10 cd00484 PEPCK_ATP Phosphoenolp 99.5 9.5E-11 2.1E-15 129.5 32.7 458 68-628 10-506 (508)
11 PF01293 PEPCK_ATP: Phosphoeno 99.4 1.2E-11 2.5E-16 136.0 22.8 385 68-523 11-409 (466)
12 PLN02597 phosphoenolpyruvate c 99.3 4.8E-09 1E-13 116.6 33.0 464 50-615 28-527 (555)
13 TIGR00224 pckA phosphoenolpyru 99.2 5.3E-08 1.2E-12 108.3 34.1 466 55-628 19-527 (532)
14 COG1866 PckA Phosphoenolpyruva 98.3 0.00079 1.7E-08 74.7 29.8 449 68-618 28-510 (529)
15 cd02023 UMPK Uridine monophosp 89.3 0.16 3.5E-06 49.0 1.1 33 288-320 2-35 (198)
16 cd01918 HprK_C HprK/P, the bif 89.0 0.37 8E-06 46.7 3.3 43 292-338 21-63 (149)
17 COG0572 Udk Uridine kinase [Nu 86.0 0.42 9.1E-06 49.2 1.8 38 283-320 6-44 (218)
18 PTZ00301 uridine kinase; Provi 85.1 0.5 1.1E-05 47.7 1.9 18 286-303 4-21 (210)
19 COG3842 PotA ABC-type spermidi 82.3 0.68 1.5E-05 50.6 1.6 40 281-323 29-72 (352)
20 PF00485 PRK: Phosphoribulokin 80.2 0.83 1.8E-05 44.4 1.3 16 288-303 2-17 (194)
21 PF07475 Hpr_kinase_C: HPr Ser 79.9 1.6 3.5E-05 43.5 3.2 58 272-337 10-67 (171)
22 TIGR02237 recomb_radB DNA repa 77.7 1.2 2.7E-05 43.2 1.6 22 281-304 10-31 (209)
23 COG4525 TauB ABC-type taurine 76.1 1.4 3.1E-05 45.7 1.6 17 287-303 33-49 (259)
24 TIGR00235 udk uridine kinase. 75.9 1.5 3.3E-05 43.0 1.7 22 280-303 3-24 (207)
25 PF13207 AAA_17: AAA domain; P 75.7 1.4 3E-05 38.7 1.3 31 289-320 3-33 (121)
26 TIGR00679 hpr-ser Hpr(Ser) kin 75.6 2.6 5.5E-05 45.5 3.4 91 239-338 103-196 (304)
27 KOG3220|consensus 75.2 0.99 2.1E-05 46.6 0.2 44 273-332 1-65 (225)
28 TIGR00554 panK_bact pantothena 74.8 1 2.2E-05 47.8 0.2 19 284-302 61-79 (290)
29 PRK06696 uridine kinase; Valid 74.6 1.8 3.9E-05 43.2 1.9 38 283-320 20-61 (223)
30 PRK05480 uridine/cytidine kina 74.3 1.9 4.1E-05 42.2 1.9 36 284-319 5-41 (209)
31 COG1116 TauB ABC-type nitrate/ 73.9 1.8 3.8E-05 45.6 1.7 20 281-302 27-46 (248)
32 PRK10078 ribose 1,5-bisphospho 73.7 2.1 4.5E-05 41.4 2.0 25 288-312 5-29 (186)
33 PF05496 RuvB_N: Holliday junc 72.8 1.6 3.5E-05 45.5 1.0 15 292-306 57-71 (233)
34 cd01394 radB RadB. The archaea 71.5 2.2 4.7E-05 41.9 1.6 22 281-304 17-38 (218)
35 COG4619 ABC-type uncharacteriz 71.4 3.4 7.4E-05 42.2 2.9 27 282-310 28-58 (223)
36 smart00382 AAA ATPases associa 71.2 2.6 5.5E-05 35.6 1.8 14 291-304 8-21 (148)
37 COG1117 PstB ABC-type phosphat 70.5 2.6 5.7E-05 44.1 2.0 32 280-313 30-65 (253)
38 PRK06547 hypothetical protein; 70.1 2.7 5.7E-05 41.1 1.8 22 283-304 13-34 (172)
39 cd01393 recA_like RecA is a b 69.7 2.6 5.6E-05 41.3 1.7 22 281-304 17-38 (226)
40 PRK14738 gmk guanylate kinase; 69.3 2.9 6.3E-05 41.4 1.9 24 278-302 7-30 (206)
41 PRK00300 gmk guanylate kinase; 69.2 3.1 6.7E-05 40.2 2.1 21 282-304 4-24 (205)
42 PRK09270 nucleoside triphospha 68.2 1.8 3.9E-05 43.3 0.3 22 282-303 30-51 (229)
43 PRK05428 HPr kinase/phosphoryl 67.8 6.5 0.00014 42.6 4.3 92 238-338 102-196 (308)
44 cd00983 recA RecA is a bacter 67.6 2.8 6E-05 45.5 1.5 22 281-304 53-74 (325)
45 PRK09825 idnK D-gluconate kina 67.1 2.4 5.2E-05 41.3 0.8 22 283-306 3-24 (176)
46 PRK08233 hypothetical protein; 67.0 3.3 7.1E-05 38.8 1.7 33 287-320 5-38 (182)
47 COG3839 MalK ABC-type sugar tr 66.8 3.1 6.7E-05 45.4 1.7 37 281-320 27-67 (338)
48 TIGR02322 phosphon_PhnN phosph 66.7 3.4 7.3E-05 39.2 1.8 16 288-303 4-19 (179)
49 cd02025 PanK Pantothenate kina 65.7 3 6.4E-05 42.2 1.2 16 288-303 2-17 (220)
50 cd00009 AAA The AAA+ (ATPases 65.2 4.2 9E-05 35.0 1.9 21 282-304 18-38 (151)
51 PLN03046 D-glycerate 3-kinase; 65.1 1.9 4.1E-05 48.8 -0.3 75 284-359 211-289 (460)
52 PRK00131 aroK shikimate kinase 64.3 4.4 9.6E-05 37.4 2.0 22 282-305 3-24 (175)
53 TIGR03263 guanyl_kin guanylate 64.3 4.1 8.8E-05 38.5 1.8 19 284-304 2-20 (180)
54 COG1127 Ttg2A ABC-type transpo 63.8 7.6 0.00016 41.3 3.7 57 278-340 29-89 (263)
55 COG1167 ARO8 Transcriptional r 63.8 27 0.00059 39.1 8.3 110 35-169 131-245 (459)
56 PLN02348 phosphoribulokinase 63.5 4.2 9.2E-05 45.3 2.0 21 283-303 47-67 (395)
57 PRK11545 gntK gluconate kinase 63.0 2.7 5.8E-05 40.3 0.3 13 292-304 2-14 (163)
58 cd02028 UMPK_like Uridine mono 62.8 3.8 8.2E-05 39.9 1.3 30 288-317 2-34 (179)
59 cd02024 NRK1 Nicotinamide ribo 62.8 3.7 8.1E-05 40.9 1.3 18 288-305 2-19 (187)
60 cd01123 Rad51_DMC1_radA Rad51_ 62.7 4.4 9.6E-05 39.9 1.8 22 281-304 17-38 (235)
61 PRK09354 recA recombinase A; P 62.5 3.9 8.6E-05 44.8 1.5 22 281-304 58-79 (349)
62 PF13671 AAA_33: AAA domain; P 62.3 4 8.6E-05 36.7 1.3 15 291-305 5-19 (143)
63 COG0478 RIO-like serine/threon 62.2 4.6 9.9E-05 43.6 1.9 54 132-200 43-96 (304)
64 PF00004 AAA: ATPase family as 61.7 3.1 6.6E-05 36.4 0.4 12 292-303 5-16 (132)
65 TIGR02012 tigrfam_recA protein 61.1 4.4 9.4E-05 43.9 1.5 22 281-304 53-74 (321)
66 cd03238 ABC_UvrA The excision 61.0 6.6 0.00014 38.6 2.6 25 278-304 16-40 (176)
67 TIGR02236 recomb_radA DNA repa 61.0 4.5 9.8E-05 42.3 1.6 22 281-304 93-114 (310)
68 TIGR03878 thermo_KaiC_2 KaiC d 60.8 4.5 9.8E-05 41.7 1.5 22 281-304 34-55 (259)
69 PLN00020 ribulose bisphosphate 60.7 3.5 7.6E-05 46.1 0.7 59 241-305 109-168 (413)
70 COG1125 OpuBA ABC-type proline 60.7 6.2 0.00013 42.5 2.5 40 278-320 22-65 (309)
71 PRK04301 radA DNA repair and r 60.6 4.7 0.0001 42.6 1.6 21 281-303 100-120 (317)
72 cd00227 CPT Chloramphenicol (C 60.5 5.4 0.00012 38.1 1.9 20 283-304 2-21 (175)
73 KOG0733|consensus 60.4 4.3 9.2E-05 47.9 1.3 51 245-304 188-242 (802)
74 COG1136 SalX ABC-type antimicr 60.2 5 0.00011 41.6 1.7 40 281-323 29-72 (226)
75 cd03270 ABC_UvrA_I The excisio 59.8 5.9 0.00013 39.8 2.1 24 278-303 16-39 (226)
76 PRK05541 adenylylsulfate kinas 59.8 6 0.00013 37.6 2.1 21 281-303 5-25 (176)
77 KOG0951|consensus 59.7 7.7 0.00017 48.9 3.4 37 253-305 302-345 (1674)
78 PF08303 tRNA_lig_kinase: tRNA 59.5 1.8 4E-05 43.1 -1.5 27 293-320 7-34 (168)
79 COG1124 DppF ABC-type dipeptid 58.8 6.2 0.00013 41.7 2.1 24 279-304 29-52 (252)
80 COG4608 AppF ABC-type oligopep 58.8 10 0.00022 40.5 3.6 42 279-323 35-80 (268)
81 PRK14731 coaE dephospho-CoA ki 58.2 5.9 0.00013 39.4 1.8 14 291-304 11-24 (208)
82 TIGR01313 therm_gnt_kin carboh 58.2 3 6.6E-05 38.9 -0.2 19 292-310 5-23 (163)
83 TIGR02868 CydC thiol reductant 57.8 6 0.00013 44.2 1.9 26 278-305 356-381 (529)
84 PF07724 AAA_2: AAA domain (Cd 57.7 4.3 9.3E-05 39.7 0.7 19 288-306 6-24 (171)
85 PRK08118 topology modulation p 57.5 6 0.00013 38.2 1.7 19 285-305 3-21 (167)
86 PRK08084 DNA replication initi 56.9 7 0.00015 39.6 2.1 23 280-304 42-64 (235)
87 TIGR01360 aden_kin_iso1 adenyl 56.4 3.3 7.2E-05 39.0 -0.3 20 285-304 3-22 (188)
88 PF08423 Rad51: Rad51; InterP 56.3 5.7 0.00012 41.2 1.3 20 282-303 37-56 (256)
89 PRK00889 adenylylsulfate kinas 56.2 8.4 0.00018 36.5 2.4 37 281-319 2-41 (175)
90 TIGR03238 dnd_assoc_3 dnd syst 56.1 7.1 0.00015 44.8 2.2 22 278-301 27-48 (504)
91 PRK08533 flagellar accessory p 55.8 7.1 0.00015 39.6 1.9 31 281-313 22-55 (230)
92 PRK11308 dppF dipeptide transp 55.7 12 0.00027 40.0 3.8 37 281-320 39-79 (327)
93 COG4598 HisP ABC-type histidin 55.3 23 0.0005 36.8 5.4 55 278-336 27-85 (256)
94 PRK14247 phosphate ABC transpo 55.3 7.6 0.00016 39.0 2.0 23 281-305 27-49 (250)
95 smart00564 PQQ beta-propeller 55.3 16 0.00034 25.4 3.1 25 315-340 3-27 (33)
96 COG4181 Predicted ABC-type tra 55.0 5.3 0.00011 41.0 0.8 52 283-340 36-92 (228)
97 PF13570 PQQ_3: PQQ-like domai 54.9 14 0.0003 27.4 2.9 22 315-337 18-39 (40)
98 PF04665 Pox_A32: Poxvirus A32 54.8 6 0.00013 41.4 1.2 16 288-303 16-31 (241)
99 KOG0060|consensus 54.5 8.7 0.00019 45.1 2.6 23 278-302 456-478 (659)
100 PRK07261 topology modulation p 54.2 6.6 0.00014 37.9 1.3 15 291-305 6-20 (171)
101 PF00910 RNA_helicase: RNA hel 54.1 4.8 0.0001 35.8 0.4 13 292-304 5-17 (107)
102 TIGR03881 KaiC_arch_4 KaiC dom 53.9 7.3 0.00016 38.5 1.6 21 281-303 18-38 (229)
103 cd03250 ABCC_MRP_domain1 Domai 53.7 8.8 0.00019 37.3 2.1 25 278-304 26-50 (204)
104 PRK01184 hypothetical protein; 53.3 5.4 0.00012 38.1 0.6 25 292-317 8-32 (184)
105 PRK07667 uridine kinase; Provi 53.3 8.6 0.00019 37.7 2.0 36 284-319 16-54 (193)
106 PRK14237 phosphate transporter 53.2 19 0.0004 37.0 4.5 54 232-304 9-65 (267)
107 cd03256 ABC_PhnC_transporter A 53.2 9.7 0.00021 37.8 2.4 22 281-304 25-46 (241)
108 PRK05439 pantothenate kinase; 53.1 8.7 0.00019 41.5 2.1 36 282-317 83-123 (311)
109 PRK03846 adenylylsulfate kinas 53.1 8.9 0.00019 37.5 2.1 40 280-321 21-64 (198)
110 cd00071 GMPK Guanosine monopho 53.0 7.2 0.00016 36.4 1.3 17 288-304 2-18 (137)
111 PLN02165 adenylate isopentenyl 52.2 8.9 0.00019 41.9 2.1 26 279-306 39-64 (334)
112 TIGR00960 3a0501s02 Type II (G 51.9 11 0.00024 37.0 2.5 22 281-304 27-48 (216)
113 cd02026 PRK Phosphoribulokinas 51.7 7.4 0.00016 40.8 1.3 33 288-321 2-37 (273)
114 cd03255 ABC_MJ0796_Lo1CDE_FtsE 51.6 11 0.00024 36.9 2.4 22 281-304 28-49 (218)
115 PLN02318 phosphoribulokinase/u 51.6 9.4 0.0002 45.1 2.3 54 231-305 32-85 (656)
116 cd01131 PilT Pilus retraction 51.5 14 0.0003 36.4 3.2 36 288-323 4-43 (198)
117 PTZ00132 GTP-binding nuclear p 51.5 13 0.00029 36.2 3.0 39 288-326 12-52 (215)
118 PTZ00035 Rad51 protein; Provis 51.5 8.1 0.00017 41.8 1.6 22 281-304 116-137 (337)
119 cd03226 ABC_cobalt_CbiO_domain 51.3 11 0.00024 36.7 2.4 22 281-304 24-45 (205)
120 COG1126 GlnQ ABC-type polar am 51.1 10 0.00022 39.8 2.2 37 281-320 26-66 (240)
121 cd03235 ABC_Metallic_Cations A 51.1 11 0.00023 36.9 2.3 22 281-304 23-44 (213)
122 TIGR02315 ABC_phnC phosphonate 51.0 11 0.00023 37.6 2.3 22 281-304 26-47 (243)
123 PF13401 AAA_22: AAA domain; P 51.0 7.6 0.00017 34.3 1.1 16 288-303 7-22 (131)
124 TIGR03864 PQQ_ABC_ATP ABC tran 50.5 8.9 0.00019 38.2 1.7 21 282-304 26-46 (236)
125 TIGR01978 sufC FeS assembly AT 50.5 10 0.00022 37.7 2.0 21 281-303 24-44 (243)
126 PRK15453 phosphoribulokinase; 50.5 7.9 0.00017 41.7 1.3 18 286-303 6-23 (290)
127 TIGR03608 L_ocin_972_ABC putat 50.3 9.9 0.00022 36.8 1.9 22 281-304 22-43 (206)
128 cd03261 ABC_Org_Solvent_Resist 50.0 12 0.00026 37.2 2.5 23 280-304 23-45 (235)
129 PRK02654 putative inner membra 49.7 28 0.0006 38.7 5.3 88 283-381 176-270 (375)
130 cd03225 ABC_cobalt_CbiO_domain 49.6 12 0.00027 36.3 2.4 21 281-303 25-45 (211)
131 cd03224 ABC_TM1139_LivF_branch 49.5 12 0.00026 36.6 2.4 22 281-304 24-45 (222)
132 PF13238 AAA_18: AAA domain; P 49.5 8.8 0.00019 33.4 1.3 13 291-303 4-16 (129)
133 PRK09361 radB DNA repair and r 49.4 9.4 0.0002 37.7 1.6 22 281-304 21-42 (225)
134 cd03247 ABCC_cytochrome_bd The 49.3 13 0.00029 35.5 2.6 25 278-304 23-47 (178)
135 PRK06762 hypothetical protein; 49.3 10 0.00022 35.5 1.8 17 288-304 5-21 (166)
136 PRK07429 phosphoribulokinase; 49.1 11 0.00023 40.8 2.1 21 283-303 6-26 (327)
137 cd03223 ABCD_peroxisomal_ALDP 49.1 11 0.00025 35.8 2.0 22 281-304 25-46 (166)
138 cd02019 NK Nucleoside/nucleoti 48.8 9.7 0.00021 31.5 1.3 29 289-317 3-32 (69)
139 COG2256 MGS1 ATPase related to 48.7 9.1 0.0002 43.2 1.5 38 253-306 30-69 (436)
140 cd03260 ABC_PstB_phosphate_tra 48.7 13 0.00029 36.6 2.5 22 281-304 24-45 (227)
141 PLN02796 D-glycerate 3-kinase 48.5 10 0.00022 41.8 1.7 55 286-341 101-159 (347)
142 TIGR01242 26Sp45 26S proteasom 48.4 8.9 0.00019 41.2 1.4 26 275-304 150-175 (364)
143 PRK10575 iron-hydroxamate tran 48.3 16 0.00034 37.4 3.0 21 282-304 36-56 (265)
144 PRK06620 hypothetical protein; 48.3 11 0.00025 37.9 2.0 23 280-304 41-63 (214)
145 TIGR03877 thermo_KaiC_1 KaiC d 48.2 11 0.00023 38.2 1.8 21 281-303 19-39 (237)
146 cd03254 ABCC_Glucan_exporter_l 48.1 12 0.00027 36.9 2.2 24 279-304 25-48 (229)
147 PF00005 ABC_tran: ABC transpo 47.8 13 0.00028 33.4 2.1 21 281-303 9-29 (137)
148 PF01935 DUF87: Domain of unkn 47.8 8.1 0.00018 38.2 0.9 28 262-304 15-42 (229)
149 PRK11124 artP arginine transpo 47.8 13 0.00029 37.0 2.4 22 281-304 26-47 (242)
150 TIGR01166 cbiO cobalt transpor 47.6 14 0.00031 35.5 2.5 21 280-302 15-35 (190)
151 cd03272 ABC_SMC3_euk Eukaryoti 47.4 12 0.00027 37.2 2.1 14 289-302 27-40 (243)
152 cd03269 ABC_putative_ATPase Th 47.3 13 0.00028 36.3 2.2 22 281-304 24-45 (210)
153 TIGR02881 spore_V_K stage V sp 47.0 12 0.00026 38.3 2.0 20 285-304 42-61 (261)
154 cd02029 PRK_like Phosphoribulo 47.0 9.7 0.00021 40.8 1.3 16 288-303 2-17 (277)
155 COG1222 RPT1 ATP-dependent 26S 46.9 9.5 0.00021 42.6 1.3 54 274-331 178-232 (406)
156 cd03271 ABC_UvrA_II The excisi 46.9 14 0.0003 38.8 2.4 26 276-303 14-39 (261)
157 TIGR01186 proV glycine betaine 46.9 17 0.00038 39.7 3.3 24 279-304 15-38 (363)
158 KOG0730|consensus 46.9 8.9 0.00019 45.4 1.1 57 240-306 429-489 (693)
159 cd03273 ABC_SMC2_euk Eukaryoti 46.7 11 0.00023 38.3 1.5 15 288-302 28-42 (251)
160 PRK11629 lolD lipoprotein tran 46.6 15 0.00032 36.7 2.4 22 281-304 33-54 (233)
161 cd03293 ABC_NrtD_SsuB_transpor 46.6 13 0.00029 36.5 2.2 22 281-304 28-49 (220)
162 PRK10247 putative ABC transpor 46.6 14 0.00031 36.7 2.4 22 281-304 31-52 (225)
163 PF13481 AAA_25: AAA domain; P 46.5 12 0.00025 35.6 1.7 29 272-303 22-50 (193)
164 cd03292 ABC_FtsE_transporter F 46.4 15 0.00033 35.8 2.5 22 281-304 25-46 (214)
165 cd03214 ABC_Iron-Siderophores_ 46.3 13 0.00029 35.6 2.0 22 281-304 23-44 (180)
166 cd03245 ABCC_bacteriocin_expor 46.2 15 0.00033 35.9 2.5 22 281-304 28-49 (220)
167 cd03268 ABC_BcrA_bacitracin_re 46.1 15 0.00033 35.7 2.4 21 281-303 24-44 (208)
168 cd03233 ABC_PDR_domain1 The pl 46.0 13 0.00028 36.5 2.0 21 281-303 31-51 (202)
169 PRK00081 coaE dephospho-CoA ki 46.0 11 0.00025 36.9 1.6 28 272-312 1-28 (194)
170 PRK13539 cytochrome c biogenes 45.8 13 0.00029 36.4 2.0 21 281-303 26-46 (207)
171 TIGR03371 cellulose_yhjQ cellu 45.8 10 0.00022 37.5 1.1 36 273-319 1-39 (246)
172 cd02020 CMPK Cytidine monophos 45.6 11 0.00024 33.8 1.3 17 288-304 2-18 (147)
173 cd03229 ABC_Class3 This class 45.4 16 0.00035 35.0 2.5 24 278-303 21-44 (178)
174 cd03257 ABC_NikE_OppD_transpor 45.4 13 0.00028 36.5 1.9 22 281-304 29-50 (228)
175 COG0396 sufC Cysteine desulfur 45.4 16 0.00035 38.7 2.6 33 280-314 27-59 (251)
176 PRK10416 signal recognition pa 45.3 10 0.00022 40.8 1.2 37 282-320 113-152 (318)
177 cd03266 ABC_NatA_sodium_export 45.2 14 0.00031 36.1 2.2 22 281-304 29-50 (218)
178 TIGR02204 MsbA_rel ABC transpo 45.0 13 0.00028 41.9 2.0 24 279-304 362-385 (576)
179 cd03248 ABCC_TAP TAP, the Tran 44.9 16 0.00036 36.0 2.5 22 281-304 38-59 (226)
180 PRK04328 hypothetical protein; 44.7 13 0.00028 38.1 1.8 21 281-303 21-41 (249)
181 cd03230 ABC_DR_subfamily_A Thi 44.6 17 0.00037 34.7 2.5 22 281-304 24-45 (173)
182 PRK11432 fbpC ferric transport 44.6 16 0.00035 39.6 2.6 37 281-320 30-70 (351)
183 PRK09452 potA putrescine/sperm 44.4 15 0.00034 40.2 2.4 22 281-304 38-59 (375)
184 cd03259 ABC_Carb_Solutes_like 44.3 17 0.00036 35.6 2.4 21 281-303 24-44 (213)
185 cd03296 ABC_CysA_sulfate_impor 44.3 17 0.00036 36.4 2.5 22 281-304 26-47 (239)
186 PF06414 Zeta_toxin: Zeta toxi 44.3 15 0.00032 36.1 2.0 24 281-304 11-34 (199)
187 TIGR03410 urea_trans_UrtE urea 44.2 17 0.00036 36.0 2.4 22 281-304 24-45 (230)
188 COG4003 Uncharacterized protei 44.1 33 0.00072 31.3 4.0 40 31-83 27-66 (98)
189 PRK06217 hypothetical protein; 44.1 12 0.00025 36.2 1.3 17 288-304 4-20 (183)
190 PLN03187 meiotic recombination 44.1 13 0.00028 40.7 1.8 22 281-304 124-145 (344)
191 cd03222 ABC_RNaseL_inhibitor T 44.0 14 0.00031 36.4 1.9 21 281-303 23-43 (177)
192 cd03262 ABC_HisP_GlnQ_permease 43.9 17 0.00036 35.4 2.3 22 281-304 24-45 (213)
193 PRK10751 molybdopterin-guanine 43.8 11 0.00025 37.4 1.2 28 286-313 7-37 (173)
194 TIGR02673 FtsE cell division A 43.7 17 0.00037 35.4 2.4 22 281-304 26-47 (214)
195 KOG0733|consensus 43.6 11 0.00024 44.7 1.2 29 274-306 538-566 (802)
196 cd03219 ABC_Mj1267_LivG_branch 43.6 17 0.00036 36.1 2.3 22 281-304 24-45 (236)
197 PRK15177 Vi polysaccharide exp 43.6 17 0.00037 36.1 2.4 22 281-304 11-32 (213)
198 KOG0727|consensus 43.6 11 0.00025 40.6 1.2 82 231-321 139-226 (408)
199 PF07728 AAA_5: AAA domain (dy 43.6 12 0.00027 33.9 1.3 14 291-304 5-18 (139)
200 PRK05973 replicative DNA helic 43.5 14 0.0003 38.5 1.8 22 281-304 62-83 (237)
201 COG4136 ABC-type uncharacteriz 43.1 18 0.0004 36.6 2.5 23 277-301 22-44 (213)
202 PRK13477 bifunctional pantoate 43.1 12 0.00026 43.1 1.4 60 286-362 285-345 (512)
203 cd03258 ABC_MetN_methionine_tr 43.1 17 0.00037 36.0 2.3 22 281-304 29-50 (233)
204 TIGR00017 cmk cytidylate kinas 43.0 14 0.0003 37.5 1.7 36 543-581 170-205 (217)
205 PRK14737 gmk guanylate kinase; 43.0 15 0.00033 36.2 1.9 17 286-302 5-21 (186)
206 COG0714 MoxR-like ATPases [Gen 42.9 12 0.00026 39.6 1.3 56 251-328 22-79 (329)
207 PRK11174 cysteine/glutathione 42.7 15 0.00033 41.6 2.1 26 278-305 371-396 (588)
208 PTZ00454 26S protease regulato 42.7 12 0.00025 41.6 1.2 25 276-304 174-198 (398)
209 PRK14261 phosphate ABC transpo 42.7 18 0.00039 36.4 2.5 22 281-304 30-51 (253)
210 PRK03992 proteasome-activating 42.5 13 0.00027 40.8 1.4 27 274-304 158-184 (389)
211 TIGR03005 ectoine_ehuA ectoine 42.5 16 0.00035 36.7 2.1 38 281-321 24-65 (252)
212 TIGR02238 recomb_DMC1 meiotic 42.4 14 0.00031 39.6 1.8 22 281-304 94-115 (313)
213 PTZ00361 26 proteosome regulat 42.3 11 0.00025 42.3 1.1 26 276-305 212-237 (438)
214 cd01124 KaiC KaiC is a circadi 42.3 12 0.00027 35.1 1.2 14 290-303 4-17 (187)
215 PRK11247 ssuB aliphatic sulfon 42.0 19 0.00041 37.1 2.5 22 281-304 36-57 (257)
216 PRK11650 ugpC glycerol-3-phosp 41.9 18 0.00039 39.3 2.5 38 280-320 27-68 (356)
217 PRK09473 oppD oligopeptide tra 41.9 15 0.00034 39.3 1.9 23 281-305 40-62 (330)
218 PRK11176 lipid transporter ATP 41.7 16 0.00034 41.4 2.0 23 280-304 366-388 (582)
219 PRK06067 flagellar accessory p 41.7 15 0.00032 36.7 1.7 22 281-304 23-44 (234)
220 COG1120 FepC ABC-type cobalami 41.7 19 0.00041 38.2 2.4 58 483-550 126-183 (258)
221 PRK11248 tauB taurine transpor 41.5 19 0.00042 36.7 2.5 22 281-304 25-46 (255)
222 cd03265 ABC_DrrA DrrA is the A 41.4 18 0.00038 35.7 2.1 21 282-304 25-45 (220)
223 PRK09087 hypothetical protein; 41.3 17 0.00037 36.9 2.0 20 283-304 44-63 (226)
224 cd03283 ABC_MutS-like MutS-lik 41.2 23 0.00049 35.3 2.9 18 283-302 25-42 (199)
225 cd03221 ABCF_EF-3 ABCF_EF-3 E 41.2 18 0.00039 33.8 2.0 21 281-303 24-44 (144)
226 PRK14734 coaE dephospho-CoA ki 41.2 15 0.00032 36.6 1.5 22 273-306 1-22 (200)
227 TIGR00972 3a0107s01c2 phosphat 41.1 20 0.00044 36.0 2.5 21 281-303 25-45 (247)
228 COG4178 ABC-type uncharacteriz 41.0 17 0.00036 42.9 2.1 18 282-301 418-435 (604)
229 cd03251 ABCC_MsbA MsbA is an e 41.0 21 0.00045 35.4 2.5 22 281-304 26-47 (234)
230 PRK06893 DNA replication initi 40.9 12 0.00027 37.6 1.0 18 285-304 41-58 (229)
231 PRK11144 modC molybdate transp 40.9 20 0.00043 38.7 2.6 37 281-320 22-62 (352)
232 PF11927 DUF3445: Protein of u 40.9 54 0.0012 34.3 5.6 71 234-312 75-155 (249)
233 PRK14239 phosphate transporter 40.8 20 0.00044 35.9 2.4 23 281-305 29-51 (252)
234 PRK00698 tmk thymidylate kinas 40.7 16 0.00036 34.9 1.7 19 286-304 4-22 (205)
235 cd00984 DnaB_C DnaB helicase C 40.7 16 0.00035 36.1 1.7 21 281-303 11-31 (242)
236 TIGR02655 circ_KaiC circadian 40.5 16 0.00034 41.3 1.8 22 281-304 19-40 (484)
237 TIGR02203 MsbA_lipidA lipid A 40.5 15 0.00033 41.3 1.7 24 280-305 355-378 (571)
238 PTZ00451 dephospho-CoA kinase; 40.3 15 0.00033 38.2 1.5 20 273-304 1-20 (244)
239 cd03278 ABC_SMC_barmotin Barmo 40.1 15 0.00032 36.4 1.3 18 287-304 24-41 (197)
240 COG2884 FtsE Predicted ATPase 40.1 21 0.00045 37.2 2.4 43 278-324 23-70 (223)
241 PF00625 Guanylate_kin: Guanyl 40.1 18 0.0004 34.8 1.9 19 283-303 2-20 (183)
242 PRK14274 phosphate ABC transpo 40.0 19 0.00041 36.5 2.1 23 281-305 36-58 (259)
243 PRK11022 dppD dipeptide transp 40.0 18 0.00039 38.7 2.1 24 279-304 29-52 (326)
244 cd03252 ABCC_Hemolysin The ABC 40.0 22 0.00047 35.4 2.5 22 281-304 26-47 (237)
245 PRK10908 cell division protein 39.9 22 0.00047 35.1 2.5 22 281-304 26-47 (222)
246 TIGR03797 NHPM_micro_ABC2 NHPM 39.8 20 0.00043 41.7 2.5 26 278-305 474-499 (686)
247 cd03264 ABC_drug_resistance_li 39.8 13 0.00029 36.2 1.0 16 289-304 29-44 (211)
248 cd01120 RecA-like_NTPases RecA 39.8 15 0.00033 32.8 1.2 14 291-304 5-18 (165)
249 PRK11000 maltose/maltodextrin 39.7 20 0.00044 39.0 2.4 22 281-304 27-48 (369)
250 PRK13649 cbiO cobalt transport 39.7 21 0.00046 36.7 2.5 22 281-304 31-52 (280)
251 TIGR02324 CP_lyasePhnL phospho 39.6 19 0.00041 35.5 2.0 22 281-304 32-53 (224)
252 cd02021 GntK Gluconate kinase 39.6 14 0.00029 34.0 0.9 21 291-311 5-25 (150)
253 PRK13657 cyclic beta-1,2-gluca 39.6 18 0.00038 41.2 2.0 22 281-304 359-380 (588)
254 cd03216 ABC_Carb_Monos_I This 39.6 23 0.0005 33.7 2.5 22 281-304 24-45 (163)
255 PLN02748 tRNA dimethylallyltra 39.5 18 0.00039 41.3 2.0 30 288-320 25-55 (468)
256 PRK10584 putative ABC transpor 39.4 19 0.00041 35.6 2.0 22 281-304 34-55 (228)
257 TIGR01184 ntrCD nitrate transp 39.4 22 0.00048 35.6 2.4 22 281-304 9-30 (230)
258 COG4133 CcmA ABC-type transpor 39.3 17 0.00037 37.5 1.7 19 282-302 27-45 (209)
259 TIGR00150 HI0065_YjeE ATPase, 39.3 20 0.00043 34.3 2.0 20 282-303 21-40 (133)
260 PF06745 KaiC: KaiC; InterPro 39.3 15 0.00033 36.2 1.3 21 281-303 17-37 (226)
261 cd03218 ABC_YhbG The ABC trans 39.3 21 0.00045 35.3 2.3 22 281-304 24-45 (232)
262 PRK10418 nikD nickel transport 39.2 22 0.00049 36.0 2.5 22 281-304 27-48 (254)
263 TIGR02211 LolD_lipo_ex lipopro 39.2 22 0.00048 34.8 2.4 22 281-304 29-50 (221)
264 PRK09183 transposase/IS protei 39.0 17 0.00038 37.6 1.7 34 282-317 101-137 (259)
265 cd03237 ABC_RNaseL_inhibitor_d 39.0 19 0.00042 36.8 2.0 21 282-304 24-44 (246)
266 cd03234 ABCG_White The White s 39.0 19 0.00041 35.7 1.9 21 282-304 32-52 (226)
267 TIGR00630 uvra excinuclease AB 38.8 18 0.00039 44.4 2.1 26 276-303 15-40 (924)
268 PF10662 PduV-EutP: Ethanolami 38.8 16 0.00035 35.5 1.3 14 290-303 6-19 (143)
269 PF13555 AAA_29: P-loop contai 38.7 24 0.00052 29.9 2.2 20 280-301 20-39 (62)
270 PRK13648 cbiO cobalt transport 38.7 21 0.00045 36.6 2.2 23 281-305 33-55 (269)
271 PRK13541 cytochrome c biogenes 38.6 24 0.00053 34.2 2.6 21 281-303 24-44 (195)
272 cd03228 ABCC_MRP_Like The MRP 38.6 24 0.00053 33.5 2.5 20 281-302 26-45 (171)
273 PRK13640 cbiO cobalt transport 38.6 23 0.00049 36.8 2.5 25 278-304 28-52 (282)
274 cd03246 ABCC_Protease_Secretio 38.6 24 0.00053 33.6 2.5 22 281-304 26-47 (173)
275 PRK13538 cytochrome c biogenes 38.6 20 0.00044 35.0 2.0 22 281-304 25-46 (204)
276 PRK00349 uvrA excinuclease ABC 38.6 18 0.0004 44.5 2.1 27 275-303 18-44 (943)
277 PRK14527 adenylate kinase; Pro 38.5 20 0.00044 34.7 2.0 40 593-632 143-188 (191)
278 PRK14250 phosphate ABC transpo 38.5 23 0.0005 35.6 2.5 22 281-304 27-48 (241)
279 cd00267 ABC_ATPase ABC (ATP-bi 38.2 25 0.00054 32.8 2.5 25 278-304 20-44 (157)
280 PRK14273 phosphate ABC transpo 38.2 23 0.00049 35.8 2.4 21 281-303 31-51 (254)
281 cd04155 Arl3 Arl3 subfamily. 38.1 20 0.00044 33.0 1.8 23 282-304 11-33 (173)
282 PRK10037 cell division protein 38.1 16 0.00034 37.1 1.2 33 273-316 1-36 (250)
283 cd04159 Arl10_like Arl10-like 38.0 18 0.00039 31.9 1.4 15 288-302 2-16 (159)
284 PRK10419 nikE nickel transport 38.0 21 0.00045 36.7 2.1 23 281-305 36-58 (268)
285 PRK10744 pstB phosphate transp 38.0 23 0.00051 36.0 2.4 22 281-304 37-58 (260)
286 TIGR03265 PhnT2 putative 2-ami 37.9 24 0.00052 38.3 2.6 37 281-320 28-68 (353)
287 PRK11264 putative amino-acid A 37.9 23 0.0005 35.5 2.3 22 281-304 27-48 (250)
288 PRK09580 sufC cysteine desulfu 37.8 21 0.00045 35.7 2.0 21 282-304 26-46 (248)
289 PRK13543 cytochrome c biogenes 37.8 23 0.00051 34.9 2.3 22 281-304 35-56 (214)
290 cd03295 ABC_OpuCA_Osmoprotecti 37.8 25 0.00053 35.3 2.5 21 281-303 25-45 (242)
291 PRK10253 iron-enterobactin tra 37.8 19 0.0004 36.9 1.7 21 282-304 32-52 (265)
292 PRK11831 putative ABC transpor 37.8 24 0.00052 36.2 2.5 25 278-304 28-52 (269)
293 cd03298 ABC_ThiQ_thiamine_tran 37.6 25 0.00054 34.3 2.5 37 281-320 22-62 (211)
294 TIGR01193 bacteriocin_ABC ABC- 37.6 20 0.00043 41.9 2.1 26 278-305 495-520 (708)
295 PRK14259 phosphate ABC transpo 37.3 25 0.00053 36.2 2.5 22 281-304 37-58 (269)
296 PRK07366 succinyldiaminopimela 37.2 1.9E+02 0.0041 30.9 9.2 108 38-170 70-184 (388)
297 PRK10619 histidine/lysine/argi 37.2 25 0.00055 35.6 2.5 25 278-304 26-50 (257)
298 PF06564 YhjQ: YhjQ protein; 37.2 17 0.00038 38.0 1.4 20 273-303 1-20 (243)
299 CHL00131 ycf16 sulfate ABC tra 37.2 24 0.00051 35.4 2.3 22 281-304 31-52 (252)
300 PRK13638 cbiO cobalt transport 37.2 24 0.00053 36.1 2.4 21 281-303 25-45 (271)
301 PRK10895 lipopolysaccharide AB 37.1 24 0.00053 35.2 2.4 22 281-304 27-48 (241)
302 TIGR02239 recomb_RAD51 DNA rep 37.1 19 0.00041 38.7 1.6 22 281-304 94-115 (316)
303 PRK09493 glnQ glutamine ABC tr 37.1 22 0.00049 35.4 2.1 22 281-304 25-46 (240)
304 PF00448 SRP54: SRP54-type pro 37.1 20 0.00044 35.8 1.8 35 286-320 2-39 (196)
305 PRK11607 potG putrescine trans 37.0 24 0.00053 38.7 2.5 37 281-320 43-83 (377)
306 PRK13632 cbiO cobalt transport 37.0 25 0.00054 36.1 2.5 20 281-302 33-52 (271)
307 TIGR02857 CydD thiol reductant 37.0 23 0.00051 39.6 2.4 25 279-305 344-368 (529)
308 PRK13540 cytochrome c biogenes 36.9 26 0.00056 34.2 2.4 20 282-303 26-45 (200)
309 cd03263 ABC_subfamily_A The AB 36.8 26 0.00057 34.3 2.5 22 281-304 26-47 (220)
310 cd03301 ABC_MalK_N The N-termi 36.8 26 0.00056 34.2 2.4 37 281-320 24-64 (213)
311 PRK14256 phosphate ABC transpo 36.7 24 0.00052 35.5 2.3 22 281-304 28-49 (252)
312 TIGR03538 DapC_gpp succinyldia 36.7 2.5E+02 0.0053 30.2 9.9 108 38-169 66-183 (393)
313 cd03369 ABCC_NFT1 Domain 2 of 36.7 25 0.00054 34.3 2.3 22 281-304 32-53 (207)
314 TIGR03796 NHPM_micro_ABC1 NHPM 36.3 22 0.00047 41.5 2.1 26 278-305 500-525 (710)
315 cd04119 RJL RJL (RabJ-Like) su 36.3 34 0.00074 30.8 3.0 34 288-321 3-38 (168)
316 PRK15093 antimicrobial peptide 36.2 23 0.0005 37.8 2.1 22 281-304 31-52 (330)
317 PRK14265 phosphate ABC transpo 36.2 26 0.00057 36.2 2.5 22 281-304 44-65 (274)
318 PRK13547 hmuV hemin importer A 36.2 25 0.00054 36.5 2.4 21 282-304 26-46 (272)
319 TIGR03771 anch_rpt_ABC anchore 36.0 23 0.0005 35.2 2.0 21 282-304 5-25 (223)
320 PLN03186 DNA repair protein RA 36.0 20 0.00043 39.2 1.6 21 281-303 121-141 (342)
321 PRK14262 phosphate ABC transpo 36.0 24 0.00052 35.4 2.1 22 281-304 27-48 (250)
322 PRK10789 putative multidrug tr 36.0 22 0.00048 40.5 2.1 22 281-304 339-360 (569)
323 TIGR01194 cyc_pep_trnsptr cycl 36.0 21 0.00046 40.6 1.9 26 278-305 363-388 (555)
324 cd00464 SK Shikimate kinase (S 36.0 19 0.00042 32.7 1.3 22 291-312 5-26 (154)
325 PRK00091 miaA tRNA delta(2)-is 35.9 17 0.00038 39.0 1.2 19 287-305 6-24 (307)
326 cd03249 ABC_MTABC3_MDL1_MDL2 M 35.7 28 0.0006 34.6 2.5 24 279-304 25-48 (238)
327 cd03236 ABC_RNaseL_inhibitor_d 35.7 24 0.00051 36.5 2.1 21 282-304 25-45 (255)
328 TIGR01842 type_I_sec_PrtD type 35.6 22 0.00047 40.2 2.0 25 279-305 340-364 (544)
329 PRK05416 glmZ(sRNA)-inactivati 35.6 22 0.00048 37.9 1.9 20 287-306 8-27 (288)
330 PRK14241 phosphate transporter 35.6 23 0.00051 35.8 2.0 21 282-304 29-49 (258)
331 PRK15079 oligopeptide ABC tran 35.6 24 0.00051 38.0 2.1 22 281-304 45-66 (331)
332 PRK14267 phosphate ABC transpo 35.6 26 0.00057 35.2 2.3 21 282-304 29-49 (253)
333 PRK10851 sulfate/thiosulfate t 35.5 27 0.00058 37.9 2.5 37 281-320 26-66 (353)
334 TIGR01189 ccmA heme ABC export 35.5 24 0.00052 34.2 2.0 21 282-304 25-45 (198)
335 COG0467 RAD55 RecA-superfamily 35.4 22 0.00048 36.2 1.8 21 281-303 21-41 (260)
336 PHA02244 ATPase-like protein 35.4 21 0.00045 39.9 1.7 26 292-317 126-151 (383)
337 COG1192 Soj ATPases involved i 35.4 19 0.0004 36.3 1.2 24 272-306 1-24 (259)
338 COG0468 RecA RecA/RadA recombi 35.0 21 0.00046 38.1 1.6 22 281-304 58-79 (279)
339 cd03294 ABC_Pro_Gly_Bertaine T 35.0 25 0.00055 36.1 2.2 24 279-304 46-69 (269)
340 TIGR00635 ruvB Holliday juncti 34.8 20 0.00044 36.9 1.5 15 291-305 36-50 (305)
341 PRK15481 transcriptional regul 34.7 1.6E+02 0.0034 32.1 8.3 107 38-170 123-231 (431)
342 PF01583 APS_kinase: Adenylyls 34.7 23 0.0005 34.7 1.7 36 282-319 1-39 (156)
343 PRK14249 phosphate ABC transpo 34.7 29 0.00063 35.0 2.5 22 281-304 28-49 (251)
344 PRK10790 putative multidrug tr 34.6 27 0.00058 39.8 2.5 25 278-304 362-386 (592)
345 cd04163 Era Era subfamily. Er 34.6 27 0.00058 30.9 2.0 18 285-302 3-20 (168)
346 PRK12269 bifunctional cytidyla 34.6 15 0.00033 44.7 0.6 38 259-306 17-55 (863)
347 TIGR02142 modC_ABC molybdenum 34.6 26 0.00056 37.8 2.2 39 279-320 19-61 (354)
348 PRK11300 livG leucine/isoleuci 34.5 28 0.00061 35.0 2.3 21 282-304 30-50 (255)
349 PLN02231 alanine transaminase 34.5 1.5E+02 0.0032 34.2 8.3 112 37-169 169-289 (534)
350 COG1132 MdlB ABC-type multidru 34.5 24 0.00051 40.1 2.0 26 279-306 351-376 (567)
351 cd03244 ABCC_MRP_domain2 Domai 34.5 30 0.00066 33.9 2.5 22 281-304 28-49 (221)
352 PRK04220 2-phosphoglycerate ki 34.4 20 0.00043 38.8 1.3 17 288-304 95-111 (301)
353 PRK11153 metN DL-methionine tr 34.4 28 0.00061 37.4 2.5 22 281-304 29-50 (343)
354 cd03253 ABCC_ATM1_transporter 34.4 26 0.00057 34.7 2.1 22 281-304 25-46 (236)
355 PLN02840 tRNA dimethylallyltra 34.3 24 0.00052 39.9 1.9 22 285-306 21-42 (421)
356 COG4549 Uncharacterized protei 34.3 74 0.0016 32.2 5.1 50 272-321 24-85 (178)
357 cd03290 ABCC_SUR1_N The SUR do 34.2 31 0.00067 33.9 2.5 20 281-302 25-44 (218)
358 PF13191 AAA_16: AAA ATPase do 34.1 21 0.00046 33.1 1.3 21 283-303 22-42 (185)
359 PRK09544 znuC high-affinity zi 34.0 30 0.00066 35.4 2.5 24 279-304 26-49 (251)
360 PRK15056 manganese/iron transp 34.0 30 0.00065 35.6 2.5 21 281-303 31-51 (272)
361 PRK14242 phosphate transporter 33.9 29 0.00063 34.9 2.4 22 281-304 30-51 (253)
362 COG1102 Cmk Cytidylate kinase 33.8 14 0.0003 37.4 0.0 28 288-315 3-30 (179)
363 PRK09984 phosphonate/organopho 33.7 29 0.00063 35.2 2.3 22 281-304 28-49 (262)
364 TIGR02323 CP_lyasePhnK phospho 33.7 28 0.00061 35.0 2.2 22 281-304 27-48 (253)
365 cd03232 ABC_PDR_domain2 The pl 33.5 26 0.00056 34.1 1.9 21 282-304 32-52 (192)
366 PRK14243 phosphate transporter 33.4 26 0.00057 35.8 2.0 22 281-304 34-55 (264)
367 PF09130 DUF1932: Domain of un 33.3 59 0.0013 27.7 3.8 44 592-638 29-72 (73)
368 PRK15112 antimicrobial peptide 33.1 32 0.00069 35.3 2.5 21 281-303 37-57 (267)
369 PRK10522 multidrug transporter 33.0 28 0.00061 39.4 2.3 24 280-305 346-369 (547)
370 PRK14244 phosphate ABC transpo 33.0 29 0.00062 35.0 2.1 22 282-305 30-51 (251)
371 TIGR00064 ftsY signal recognit 32.9 22 0.00048 37.3 1.4 35 286-320 73-110 (272)
372 PRK13645 cbiO cobalt transport 32.9 30 0.00065 35.9 2.3 22 281-304 35-56 (289)
373 PRK14271 phosphate ABC transpo 32.9 32 0.00069 35.6 2.5 22 281-304 45-66 (276)
374 PRK11701 phnK phosphonate C-P 32.9 31 0.00067 35.0 2.3 22 281-304 30-51 (258)
375 TIGR03269 met_CoM_red_A2 methy 32.8 30 0.00066 38.8 2.5 21 281-303 24-44 (520)
376 TIGR03258 PhnT 2-aminoethylpho 32.8 32 0.00069 37.6 2.6 20 281-302 29-48 (362)
377 TIGR03375 type_I_sec_LssB type 32.8 26 0.00057 40.8 2.1 26 278-305 486-511 (694)
378 PRK14270 phosphate ABC transpo 32.7 33 0.0007 34.6 2.5 22 281-304 28-49 (251)
379 TIGR00958 3a01208 Conjugate Tr 32.6 29 0.00062 40.9 2.4 25 278-304 502-526 (711)
380 TIGR00101 ureG urease accessor 32.5 30 0.00064 34.5 2.1 36 287-322 3-40 (199)
381 KOG1970|consensus 32.5 19 0.00041 42.3 0.8 29 283-313 110-138 (634)
382 cd03215 ABC_Carb_Monos_II This 32.5 33 0.00073 32.9 2.4 22 281-304 24-45 (182)
383 cd03299 ABC_ModC_like Archeal 32.4 33 0.00072 34.3 2.5 22 281-304 23-44 (235)
384 PRK08068 transaminase; Reviewe 32.4 2.1E+02 0.0045 30.6 8.6 108 38-170 72-186 (389)
385 TIGR01277 thiQ thiamine ABC tr 32.3 28 0.00062 34.1 1.9 25 279-305 20-44 (213)
386 TIGR03880 KaiC_arch_3 KaiC dom 32.3 26 0.00056 34.7 1.6 21 281-303 14-34 (224)
387 PRK14238 phosphate transporter 32.1 34 0.00073 35.2 2.5 22 281-304 48-69 (271)
388 COG0542 clpA ATP-binding subun 32.0 15 0.00033 44.3 0.0 45 276-326 512-556 (786)
389 PRK13849 putative crown gall t 31.9 21 0.00045 36.5 0.9 33 273-316 1-36 (231)
390 cd03297 ABC_ModC_molybdenum_tr 31.8 27 0.00059 34.2 1.7 19 286-304 24-42 (214)
391 PRK14240 phosphate transporter 31.8 33 0.00072 34.4 2.3 23 281-305 27-49 (250)
392 PRK13975 thymidylate kinase; P 31.7 28 0.0006 33.4 1.7 20 286-305 3-22 (196)
393 PRK11614 livF leucine/isoleuci 31.6 35 0.00075 34.0 2.4 21 282-304 30-50 (237)
394 PRK11231 fecE iron-dicitrate t 31.5 34 0.00074 34.6 2.4 22 281-304 26-47 (255)
395 PRK10771 thiQ thiamine transpo 31.5 36 0.00078 33.9 2.5 22 281-304 23-44 (232)
396 PRK08903 DnaA regulatory inact 31.5 31 0.00068 34.1 2.1 20 283-304 42-61 (227)
397 cd03112 CobW_like The function 31.4 19 0.00041 34.4 0.5 39 292-332 7-46 (158)
398 PRK13869 plasmid-partitioning 31.3 22 0.00048 39.3 1.1 34 272-316 120-156 (405)
399 PHA02518 ParA-like protein; Pr 31.3 25 0.00054 33.8 1.3 34 275-319 2-38 (211)
400 PRK10938 putative molybdenum t 31.2 29 0.00062 38.7 2.0 22 281-304 284-305 (490)
401 PRK04040 adenylate kinase; Pro 31.2 28 0.00061 34.4 1.7 16 288-303 5-20 (188)
402 cd03282 ABC_MSH4_euk MutS4 hom 31.1 40 0.00086 33.9 2.7 21 279-301 25-45 (204)
403 PRK14272 phosphate ABC transpo 31.1 31 0.00068 34.6 2.0 21 282-304 29-49 (252)
404 PRK13647 cbiO cobalt transport 31.0 36 0.00077 35.2 2.5 22 281-304 29-50 (274)
405 cd02027 APSK Adenosine 5'-phos 31.0 16 0.00034 34.5 -0.1 26 292-317 6-34 (149)
406 PRK03695 vitamin B12-transport 31.0 36 0.00077 34.5 2.4 24 279-304 18-41 (248)
407 TIGR00968 3a0106s01 sulfate AB 31.0 39 0.00084 33.9 2.7 21 281-303 24-44 (237)
408 TIGR01188 drrA daunorubicin re 31.0 35 0.00076 35.8 2.4 22 281-304 17-38 (302)
409 PRK09700 D-allose transporter 30.9 33 0.00072 38.4 2.4 21 281-303 287-307 (510)
410 PRK14236 phosphate transporter 30.9 37 0.0008 34.9 2.5 21 282-304 50-70 (272)
411 PRK10070 glycine betaine trans 30.8 34 0.00074 38.0 2.4 39 280-321 51-93 (400)
412 PRK13548 hmuV hemin importer A 30.8 35 0.00076 34.8 2.4 22 281-304 26-47 (258)
413 TIGR03873 F420-0_ABC_ATP propo 30.8 36 0.00078 34.5 2.4 22 281-304 25-46 (256)
414 TIGR00455 apsK adenylylsulfate 30.8 33 0.00072 32.9 2.1 36 283-320 18-57 (184)
415 cd03217 ABC_FeS_Assembly ABC-t 30.7 33 0.00071 33.6 2.0 20 282-303 25-44 (200)
416 TIGR03574 selen_PSTK L-seryl-t 30.7 18 0.0004 36.5 0.3 30 291-320 5-37 (249)
417 smart00072 GuKc Guanylate kina 30.7 31 0.00068 33.3 1.9 16 288-303 5-20 (184)
418 cd03267 ABC_NatA_like Similar 30.6 37 0.00079 34.1 2.4 20 281-302 45-64 (236)
419 PLN02772 guanylate kinase 30.5 31 0.00067 38.8 2.0 19 284-302 134-152 (398)
420 PRK11160 cysteine/glutathione 30.3 33 0.00073 39.2 2.3 26 278-305 361-386 (574)
421 PRK05057 aroK shikimate kinase 30.3 26 0.00056 33.9 1.2 24 288-311 7-30 (172)
422 COG4988 CydD ABC-type transpor 30.3 34 0.00074 40.0 2.4 22 280-303 344-365 (559)
423 TIGR03420 DnaA_homol_Hda DnaA 30.3 34 0.00074 33.4 2.1 20 283-304 38-57 (226)
424 PRK14260 phosphate ABC transpo 30.2 37 0.00081 34.5 2.4 22 281-304 31-52 (259)
425 PHA02519 plasmid partition pro 30.2 26 0.00057 38.7 1.4 35 272-317 105-142 (387)
426 PF07015 VirC1: VirC1 protein; 30.0 23 0.00051 37.0 0.9 22 273-305 1-22 (231)
427 PRK14252 phosphate ABC transpo 29.9 39 0.00085 34.5 2.5 22 281-304 40-61 (265)
428 CHL00195 ycf46 Ycf46; Provisio 29.9 25 0.00053 40.3 1.2 50 249-304 229-278 (489)
429 PRK14266 phosphate ABC transpo 29.8 40 0.00087 33.9 2.6 23 281-305 27-49 (250)
430 PF07931 CPT: Chloramphenicol 29.7 28 0.00061 34.6 1.4 42 283-336 1-43 (174)
431 COG0444 DppD ABC-type dipeptid 29.7 35 0.00075 37.4 2.2 20 282-303 30-49 (316)
432 TIGR03411 urea_trans_UrtD urea 29.5 41 0.0009 33.5 2.6 20 282-303 27-46 (242)
433 cd01130 VirB11-like_ATPase Typ 29.5 28 0.00061 33.8 1.3 19 283-303 25-43 (186)
434 PRK10261 glutathione transport 29.5 32 0.0007 39.9 2.0 23 281-305 40-62 (623)
435 PRK14255 phosphate ABC transpo 29.4 38 0.00082 34.1 2.3 22 281-304 29-50 (252)
436 PRK14530 adenylate kinase; Pro 29.4 22 0.00047 35.2 0.6 43 590-632 161-209 (215)
437 PRK07550 hypothetical protein; 29.4 3.4E+02 0.0073 29.0 9.5 108 37-169 68-181 (386)
438 PRK14729 miaA tRNA delta(2)-is 29.4 22 0.00048 38.3 0.6 30 288-320 7-36 (300)
439 TIGR02769 nickel_nikE nickel i 29.4 33 0.00071 35.1 1.9 22 281-304 35-56 (265)
440 cd01672 TMPK Thymidine monopho 29.3 28 0.00061 32.7 1.3 31 287-317 2-35 (200)
441 TIGR01192 chvA glucan exporter 29.3 33 0.00073 39.3 2.1 23 281-305 359-381 (585)
442 PTZ00377 alanine aminotransfer 29.3 1.8E+02 0.0038 32.6 7.6 114 37-169 116-236 (481)
443 COG0529 CysC Adenylylsulfate k 29.2 32 0.0007 35.3 1.7 35 281-317 21-58 (197)
444 PRK14275 phosphate ABC transpo 29.0 40 0.00088 35.1 2.5 21 281-303 63-83 (286)
445 TIGR02314 ABC_MetN D-methionin 28.9 39 0.00084 36.8 2.4 38 281-321 29-70 (343)
446 TIGR02640 gas_vesic_GvpN gas v 28.8 20 0.00044 36.9 0.2 15 292-306 28-42 (262)
447 PRK04182 cytidylate kinase; Pr 28.8 30 0.00064 32.3 1.3 19 288-306 3-21 (180)
448 PRK14254 phosphate ABC transpo 28.7 41 0.00089 35.1 2.5 21 282-304 64-84 (285)
449 cd03300 ABC_PotA_N PotA is an 28.7 42 0.0009 33.5 2.4 21 282-304 25-45 (232)
450 PF06068 TIP49: TIP49 C-termin 28.7 30 0.00064 38.9 1.5 45 254-306 25-71 (398)
451 TIGR03499 FlhF flagellar biosy 28.7 31 0.00068 36.2 1.6 35 286-320 195-234 (282)
452 TIGR02770 nickel_nikD nickel i 28.6 42 0.00091 33.4 2.4 22 281-304 10-31 (230)
453 PRK10261 glutathione transport 28.6 39 0.00084 39.3 2.5 24 278-303 345-368 (623)
454 TIGR01288 nodI ATP-binding ABC 28.6 40 0.00087 35.3 2.4 22 281-304 28-49 (303)
455 TIGR02982 heterocyst_DevA ABC 28.5 43 0.00093 33.1 2.5 21 281-303 29-49 (220)
456 cd03291 ABCC_CFTR1 The CFTR su 28.5 41 0.0009 35.3 2.5 22 281-304 61-82 (282)
457 PRK14248 phosphate ABC transpo 28.4 42 0.00091 34.3 2.4 20 282-303 46-65 (268)
458 PRK13646 cbiO cobalt transport 28.4 41 0.00088 35.0 2.4 22 281-304 31-52 (286)
459 PRK15134 microcin C ABC transp 28.4 38 0.00082 38.2 2.3 18 282-301 34-51 (529)
460 PRK06761 hypothetical protein; 28.3 30 0.00066 37.0 1.5 18 287-304 5-22 (282)
461 PRK09700 D-allose transporter 28.3 40 0.00086 37.8 2.5 37 281-320 29-69 (510)
462 PRK13650 cbiO cobalt transport 28.3 41 0.00088 34.9 2.4 22 281-304 31-52 (279)
463 PRK14253 phosphate ABC transpo 28.3 37 0.0008 34.1 2.0 22 282-305 28-49 (249)
464 PF00154 RecA: recA bacterial 28.3 32 0.00069 37.6 1.6 21 281-303 51-71 (322)
465 PRK14264 phosphate ABC transpo 28.2 43 0.00092 35.3 2.5 22 281-304 69-90 (305)
466 PRK07324 transaminase; Validat 28.2 1.9E+02 0.004 31.1 7.3 108 37-169 63-171 (373)
467 PRK08960 hypothetical protein; 28.1 3.3E+02 0.0072 29.1 9.2 46 38-83 71-121 (387)
468 PRK13637 cbiO cobalt transport 28.1 41 0.00089 35.1 2.4 20 281-302 31-50 (287)
469 PF01695 IstB_IS21: IstB-like 28.0 36 0.00078 33.4 1.8 33 283-317 47-82 (178)
470 PRK14268 phosphate ABC transpo 28.0 45 0.00097 33.9 2.5 22 281-304 36-57 (258)
471 cd03275 ABC_SMC1_euk Eukaryoti 28.0 34 0.00073 34.8 1.7 16 287-302 24-39 (247)
472 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 27.9 45 0.00097 33.3 2.5 22 281-304 46-67 (224)
473 PRK03839 putative kinase; Prov 27.9 31 0.00067 32.9 1.3 29 289-317 4-32 (180)
474 PLN03071 GTP-binding nuclear p 27.8 67 0.0015 32.0 3.7 50 279-328 7-58 (219)
475 cd03240 ABC_Rad50 The catalyti 27.7 32 0.0007 34.1 1.5 17 287-303 24-40 (204)
476 PHA00729 NTP-binding motif con 27.7 39 0.00085 35.2 2.1 35 600-637 170-204 (226)
477 TIGR03689 pup_AAA proteasome A 27.7 30 0.00065 39.9 1.4 26 275-304 210-235 (512)
478 PRK02496 adk adenylate kinase; 27.7 21 0.00046 34.1 0.2 31 290-320 6-36 (184)
479 PRK13631 cbiO cobalt transport 27.5 44 0.00094 35.8 2.5 23 281-305 50-72 (320)
480 PF08477 Miro: Miro-like prote 27.5 36 0.00077 29.5 1.5 12 291-302 5-16 (119)
481 smart00175 RAB Rab subfamily o 27.5 68 0.0015 28.9 3.4 41 291-331 6-48 (164)
482 COG0324 MiaA tRNA delta(2)-iso 27.4 26 0.00056 38.1 0.8 33 288-323 6-39 (308)
483 cd03279 ABC_sbcCD SbcCD and ot 27.4 38 0.00082 33.5 1.9 17 288-304 31-47 (213)
484 TIGR01846 type_I_sec_HlyB type 27.3 33 0.00072 40.0 1.7 23 281-305 481-503 (694)
485 KOG0064|consensus 27.3 29 0.00063 40.9 1.2 13 292-304 515-527 (728)
486 PRK08356 hypothetical protein; 27.2 37 0.00081 33.1 1.8 18 287-304 7-24 (195)
487 PRK14251 phosphate ABC transpo 27.2 47 0.001 33.4 2.5 22 281-304 28-49 (251)
488 PRK13635 cbiO cobalt transport 27.1 46 0.00099 34.6 2.5 20 281-302 31-50 (279)
489 PRK12338 hypothetical protein; 27.0 24 0.00053 38.4 0.5 33 287-320 6-38 (319)
490 TIGR01187 potA spermidine/putr 26.9 24 0.00051 37.6 0.4 12 292-303 3-14 (325)
491 cd02037 MRP-like MRP (Multiple 26.9 24 0.00053 33.3 0.4 34 275-319 1-37 (169)
492 cd00046 DEXDc DEAD-like helica 26.8 33 0.00072 29.0 1.2 16 289-304 4-19 (144)
493 cd04115 Rab33B_Rab33A Rab33B/R 26.8 42 0.0009 31.2 1.9 17 287-303 4-20 (170)
494 TIGR00174 miaA tRNA isopenteny 26.4 32 0.00069 36.9 1.2 18 288-305 2-19 (287)
495 TIGR01243 CDC48 AAA family ATP 26.4 33 0.00071 40.7 1.4 26 277-306 483-508 (733)
496 PF13521 AAA_28: AAA domain; P 26.4 29 0.00062 32.6 0.8 16 289-304 3-18 (163)
497 COG2255 RuvB Holliday junction 26.4 31 0.00068 37.7 1.1 14 293-306 60-73 (332)
498 PRK14269 phosphate ABC transpo 26.4 49 0.0011 33.3 2.5 21 282-304 27-47 (246)
499 PRK10938 putative molybdenum t 26.2 43 0.00093 37.3 2.2 20 281-302 27-46 (490)
500 cd01862 Rab7 Rab7 subfamily. 26.1 69 0.0015 29.2 3.2 15 288-302 3-17 (172)
No 1
>KOG3749|consensus
Probab=100.00 E-value=2e-268 Score=2091.09 Aligned_cols=618 Identities=63% Similarity=1.153 Sum_probs=606.5
Q ss_pred hheeeeeeeeecccCcccccceecCCcCCCCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccccccc
Q psy17657 8 GLLVATAVIHTSQSNKIGEFDLVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHV 87 (652)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~ 87 (652)
|+.+++.+|. ..++++||++|||.+|+++|++||+|+|+||||+.|||||||++|++.|++.|+++|++.+|.||+
T Consensus 15 ~~~~v~~~~~----~~~~~vpv~kGd~~~L~~~V~~Fv~~~~eL~qP~~i~ICdGSe~E~~~l~~~l~e~g~~~~l~~yd 90 (640)
T KOG3749|consen 15 GQSPVPTLIV----PNIGQVPVLKGDLDSLPPAVRTFVEECAELCQPDGIHICDGSEFENQELLDALEEEGGLRPLPKYD 90 (640)
T ss_pred ccccccccee----cccCcceeeecccccCCHHHHHHHHHHHHhcCcceeEecCCcHHHHHHHHHHHHHhcCcccchhhh
Confidence 5667777777 788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEeccCCCCccccccceEEEecCCCCcCCCCCCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCC
Q psy17657 88 NCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSP 167 (652)
Q Consensus 88 n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp 167 (652)
||||+|+||+||||||++|+|+|++++|++|+..+|++++|+|||++++|..++++||+|||+|||||||||||||+|||
T Consensus 91 n~~L~rtdp~DVarVeskT~i~t~~~~dtv~~~~eGv~~~lg~wms~~df~~~~~~rFpgcM~GRtMYVvPFSMGpvGsp 170 (640)
T KOG3749|consen 91 NCWLARTDPRDVARVESKTVIVTSSKRDTVPGPPEGVEGQLGHWMSEEDFDFAVDERFPGCMKGRTMYVVPFSMGPVGSP 170 (640)
T ss_pred cceeecCChhhhheeccceEEeccccccccCCCcccccccccccCCHHHHHHHHhhcCCccccCceEEEEeeccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeccCchHHHhhhhhcccccHHHHHHhcCCCCeeeeeecccCCCCCC-CCCCCCCCCCcceEEEEcCCCCeEEEe
Q psy17657 168 LSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRALHSVGTPSSGV-HEYPHWPCDPQRTIILHKPDTMEIASY 246 (652)
Q Consensus 168 ~s~~GVqlTDS~YVv~smrIMtR~g~~v~~~lg~~~~Fv~cvHSvG~Pl~~~-~~~~~WPcnp~k~~I~h~p~~r~I~S~ 246 (652)
+||||||||||||||+|||||||||..||++|| +++|||||||||+|++.. ..+++|||||++++|+|.|++||||||
T Consensus 171 lskiGiqlTDspyvV~smRimtR~g~~Vl~~l~-~~dFvrClHSVG~Prp~~~~~v~~wpcnPe~t~i~hkp~e~EI~s~ 249 (640)
T KOG3749|consen 171 LSKIGIQLTDSPYVVLSMRIMTRMGTPVLDALG-DGDFVRCLHSVGMPRPGQQKIVNPWPCNPERTLIAHKPDEREIWSF 249 (640)
T ss_pred chhceeEecCCceeeeehhHHHHhccHHHHHhc-ccchhhhhhhcCCCCCcccCCCCCCCCCcceeEEeecCccceeeee
Confidence 999999999999999999999999999999999 677999999999999998 455579999999999999999999999
Q ss_pred cCCCccccccccchhhhhhhhcccc-------ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecc
Q psy17657 247 GSGYGGNSLLGKKCFALRINQVKEP-------NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDD 319 (652)
Q Consensus 247 GSgYGGNaLLGKKcfALRiAS~~ar-------HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDD 319 (652)
|||||||||||||||||||||+||+ ||||||||||+|+|+||||||||||||||||||.|++|||||||||||
T Consensus 250 GsgyGgnsllGkKcFalriaS~iak~eGWLAEhmlIlgITnP~g~k~~iaaafpSacgktnLam~~p~lPGwKV~cVgdd 329 (640)
T KOG3749|consen 250 GSGYGGNSLLGKKCFALRIASRLAKDEGWLAEHMLILGITNPKGEKKYIAAAFPSACGKTNLAMMNPTLPGWKVECVGDD 329 (640)
T ss_pred ccCCCCCccccchhhhhhhhhhhhhhhhhHHHhHHHhcccCCCCCceEEEEecccccccchHhhcCCCCCCceEEEeccc
Confidence 9999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred eEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHHHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCC
Q psy17657 320 IAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPW 399 (652)
Q Consensus 320 IAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w 399 (652)
|||||||.|||||||||||||||||||||.+|||+||++|++||||||||.|+||+|||||+++++++++.+|+|+|++|
T Consensus 330 iaWmkf~~dG~l~ainPEngffgvapgts~~tnP~am~t~~~ntIftnvaeTsDg~~~weg~e~~l~~~v~it~wlgk~w 409 (640)
T KOG3749|consen 330 IAWMKFDADGRLRAINPENGFFGVAPGTSEKTNPNAMATIQKNTIFTNVAETSDGGVYWEGIEKPLAPGVTITSWLGKPW 409 (640)
T ss_pred eeEEEecCCCeEEEecccccccccCCCcccccCHHHHHHHHhccceeeeeeccCCceeeccccccccCCceeecccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceeEEEEecccCCCCCcceEeeCCCcchhhhhccchhhhhhccccc
Q psy17657 400 NKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHK 479 (652)
Q Consensus 400 ~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GVPIsAiiFGGRr~~tvPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~ 479 (652)
++++++||||||||||+||+|||+|||+||+|+|||||||||||||+++|||||||++|+||||+||.|+||+|||||++
T Consensus 410 ~~~~~~~aahPnsrf~~pa~Qcpii~p~Wesp~GVPI~AiiFggRRp~gvPLvyEa~~WehGVfvga~mrseataaae~~ 489 (640)
T KOG3749|consen 410 SIGDGEPAAHPNSRFCAPASQCPIIDPAWESPEGVPISAIIFGGRRPAGVPLVYEANSWEHGVFVGAAMRSEATAAAEHK 489 (640)
T ss_pred cCCCCCcCCCCcccccCchhhCCCcCccccCCCCCceeEEEecCCCCCCCceEEEccccccceeeeehhhhhhhHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceecCCcccCCCCCCChHHHHHHHHccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccce
Q psy17657 480 GKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVR 559 (652)
Q Consensus 480 ~g~v~~DPmAMlpF~gyn~gdY~~hWL~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a 559 (652)
++++|||||||+||+|||||+|++|||+|+++...++||||||||||||++|||||||||||+|||+||+|||+|+ +.+
T Consensus 490 gkiimhdP~amrpf~gynfgkYl~HWL~m~~~~~~~~PkIFhvNwfrk~~~gKfLWPGfgeN~RVlewI~rR~~ge-~~~ 568 (640)
T KOG3749|consen 490 GKIIMHDPFAMRPFFGYNFGKYLEHWLSMGQRPKAKLPKIFHVNWFRKDKEGKFLWPGFGENARVLEWIFRRVAGE-DSA 568 (640)
T ss_pred CceEeeCchhccccccCcHHHHHHHHHHhccCCCCCCCcEEEeeeeeeccCCCccCCCCcchhHHHHHHHHHhccc-hhc
Confidence 9999999999999999999999999999999976799999999999999999999999999999999999999998 999
Q ss_pred eeCccccCcCCCCCCCccCCCCCCCCCChhhhHHHhhccChHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHh
Q psy17657 560 RFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKS 639 (652)
Q Consensus 560 ~eTPiG~iP~~~~~~ldl~gL~~~~k~~~~~~~~~l~~v~~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl~~ 639 (652)
++||||++|++ ++|||+||. ..|+.+||+|+++||++|+++||+||++|+|.|||++|.+||++|++|+.+
T Consensus 569 ~~t~iG~vp~~--~~lnL~gl~-------~id~~~L~svpkdfW~qev~~ir~y~~~Qv~~dLP~~i~~el~~L~~rv~~ 639 (640)
T KOG3749|consen 569 KETPIGLVPKE--GALNLSGLG-------NIDLAELFSVPKDFWEQEVNDIRKYLEEQVGADLPPEIDAELDALEARVHQ 639 (640)
T ss_pred ccccccccccC--CceecccCC-------ccCHHHHhCCCHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhc
Confidence 99999999999 999999996 689999999999999999999999999999999999999999999999987
Q ss_pred h
Q psy17657 640 Y 640 (652)
Q Consensus 640 ~ 640 (652)
|
T Consensus 640 ~ 640 (640)
T KOG3749|consen 640 M 640 (640)
T ss_pred C
Confidence 5
No 2
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=100.00 E-value=9.1e-266 Score=2126.72 Aligned_cols=584 Identities=56% Similarity=1.021 Sum_probs=572.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccc--cccCeEEeccCCCCccccccceEEEecCC
Q psy17657 36 SVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVR--KHVNCWLASTNPADVARVEDKTFICTVNR 113 (652)
Q Consensus 36 ~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~--k~~n~~l~rsdP~DvARve~rTfI~t~~~ 113 (652)
..|++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||+ |+||||||||||+||||||+||||||+++
T Consensus 8 ~~n~~l~~wv~e~~~l~~Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~k~~~~~~~rsdp~DvARve~rTfI~s~~~ 87 (601)
T PRK04210 8 TKNPKLLEWVAEVAELTQPDRVVWCDGSEEEYDRLRDQAVEAGTEIKLNPEKRPNSFLARSDPSDVARVEDRTFICSEKE 87 (601)
T ss_pred cCCHHHHHHHHHHHHhhCCCEEEEeCCCHHHHHHHHHHHHHcCCEeeccCCCCCceeeccCChhhhhhcccceEEecCch
Confidence 4689999999999999999999999999999999999999999999995 89999999999999999999999999999
Q ss_pred CCcCCCCCCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcccccH
Q psy17657 114 SDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGK 193 (652)
Q Consensus 114 ~da~p~~~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMtR~g~ 193 (652)
+|+||+| |||+|++|+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||||||||||||+
T Consensus 88 ~dagp~n---------nw~~p~e~~~~l~~lf~G~M~GRTMyVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g~ 158 (601)
T PRK04210 88 EDAGPTN---------NWMDPAEMRETLKGLFKGCMRGRTMYVVPFSMGPLGSPFAKIGVEITDSPYVVHSMRIMTRMGK 158 (601)
T ss_pred hhcCCcc---------CcCCHHHHHHHHHHhcCCccCCCeEEEeeeeeCCCCCCcccceEEeeCCHHHHHhHHHHHhccH
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeeeeecccCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc--
Q psy17657 194 AVLDEIAKNDEFVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-- 271 (652)
Q Consensus 194 ~v~~~lg~~~~Fv~cvHSvG~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-- 271 (652)
+||+.||++++|||||||||+|++.+|.+++||||++ |||+|+|++|+|||||||||||||||||||||||||++||
T Consensus 159 ~~l~~l~~~~~Fv~~vHSvG~p~~~~~~~v~wpcn~~-r~i~h~pe~~~I~S~gSgYgGNaLLGkKc~ALRiAs~~ar~e 237 (601)
T PRK04210 159 AVLDVLGEDGEFVPCVHSVGAPLEPGQKDVPWPCNDT-KYIVHFPETREIWSYGSGYGGNALLGKKCFALRIASVMARDE 237 (601)
T ss_pred HHHHhhCCCCceeeeeccCCCCCCCCCCCCCCCCCCC-eEEEEeCCCcEEEEecCCCCCCccchhHHHHHHHHHHHhHhc
Confidence 9999999899999999999999999988999999976 7999999999999999999999999999999999999998
Q ss_pred -----ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCC
Q psy17657 272 -----NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPG 346 (652)
Q Consensus 272 -----HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapG 346 (652)
||||||||||+|+++||||||||||||||||||.|++||||||||||||||||+|+||+|||||||+||||||||
T Consensus 238 GWLAEHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~~gwkv~~VGDDIAwm~~~~dG~l~AiNPE~GfFGVapG 317 (601)
T PRK04210 238 GWLAEHMLILGVTSPEGRKTYFAAAFPSACGKTNLAMLIPPIPGWKVETVGDDIAWIRPGEDGRLYAINPEAGFFGVAPG 317 (601)
T ss_pred ccHHHhhHHheeeCCCCCEEEEEEecccccccccHhhcCCCCCCceeEEeecceeeeeECCCCcEEEEccCCCeeEeCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhhccC-CceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q psy17657 347 TSCNTNPQAMQTIFH-NTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMD 425 (652)
Q Consensus 347 tn~~tnP~am~~l~k-ntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~id 425 (652)
||++||||||++|++ |+||||||+|+||+||||||++++| .+++||+|++|+|+++.||||||||||+|++|||+||
T Consensus 318 tn~~tnP~am~~l~~~n~IFTNValt~DG~vwWeG~~~~~P--~~~~dw~G~~W~p~~~~paaHPNsRFt~p~~q~p~id 395 (601)
T PRK04210 318 TNEKTNPNAMATLKPGNVIFTNVALTDDGDVWWEGMTEEPP--AHLIDWQGNDWTPGSGEPAAHPNARFTVPASQCPNLD 395 (601)
T ss_pred CCCCcCHHHHHhcccCCeEEeeeEECCCCCeecCCCCCCCC--CcccccCCCcCCCCCCCCCCCCccceeccHHHCCcCC
Confidence 999999999999988 9999999999999999999999877 6899999999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecccCCCCCcceEeeCCCcchhhhhccchhhhhhcccccCcceecCCcccCCCCCCChHHHHHHH
Q psy17657 426 PDWQSPQGVPISAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQHW 505 (652)
Q Consensus 426 p~wedP~GVPIsAiiFGGRr~~tvPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~~g~v~~DPmAMlpF~gyn~gdY~~hW 505 (652)
|+||||+|||||||||||||++|+|||+|||||+||||+||+|+||+||||+|++|++|||||||||||||||||||+||
T Consensus 396 p~wedP~GVpIsaiiFGGRr~~t~PlV~ea~~W~hGV~~GAtm~SE~TAAa~G~~g~~r~dPmAmlpF~gy~~gdY~~hw 475 (601)
T PRK04210 396 PEWEDPAGVPISAIIFGGRRSDTVPLVTEAFDWQHGVYMGATMGSETTAAAEGKVGVVRRDPMAMLPFCGYNMGDYFQHW 475 (601)
T ss_pred ccccCCCCCEEEEEEECCcCCCCCCeeEEccCccchheeecchhhHHHHHHhccCCcEeeCcchhccccCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccceeeCccccCcCCCCCCCccCCCCCCCC
Q psy17657 506 LDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINLTDLYEDDK 585 (652)
Q Consensus 506 L~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a~eTPiG~iP~~~~~~ldl~gL~~~~k 585 (652)
|+|+++.+.++||||||||||||++|+|||||||||+|||+||++||+|+ +.|++||||+||+| ++|||+||+++
T Consensus 476 l~~g~~~~~~~PkIF~VNwFrkd~~G~flWPGfgeN~RVL~Wi~~R~~G~-~~a~eTpiG~iP~~--~dL~~~gl~~~-- 550 (601)
T PRK04210 476 LDFGKKLGSKLPKIFGVNWFRKDEDGKFLWPGFGENMRVLKWIVDRVEGE-ADAVETPIGYLPKY--EDLDLLGLDYS-- 550 (601)
T ss_pred HHHhcccCCCCCcEEEeeeeeecCCCCCcCCCCcchhHHHHHHHHhhcCc-cCceecCCeecCCc--ccCCCcCCCCC--
Confidence 99999975699999999999999999999999999999999999999999 99999999999999 99999999854
Q ss_pred CChhhhHHHhhccChHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHhh
Q psy17657 586 PNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSY 640 (652)
Q Consensus 586 ~~~~~~~~~l~~v~~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl~~~ 640 (652)
+++|++||+||+++|++|++++++||+ |+|++||++|+++|++|++||+++
T Consensus 551 ---~~~~~~lf~v~~~~w~~e~~~~~~~~~-~~~~~lP~~l~~~l~~l~~rl~~~ 601 (601)
T PRK04210 551 ---EEDYEKLFSVDVDEWLAELELIEELFE-KFGDRLPKELFEELEALKKRLLAA 601 (601)
T ss_pred ---HHHHHHHhCCCHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHHHHHHHHhhC
Confidence 999999999999999999999999998 789999999999999999999763
No 3
>PF00821 PEPCK: Phosphoenolpyruvate carboxykinase; InterPro: IPR008209 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents GTP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004611 phosphoenolpyruvate carboxykinase activity, 0005525 GTP binding, 0006094 gluconeogenesis; PDB: 2FAH_A 2FAF_A 2QZY_B 2ZCI_D 3MOE_A 3DT7_B 2RKD_A 2RKA_A 2RK8_A 2QF2_B ....
Probab=100.00 E-value=1e-266 Score=2138.19 Aligned_cols=577 Identities=59% Similarity=1.100 Sum_probs=490.1
Q ss_pred HHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--ccccCeEEeccCCCCccccccceEEEecCCCCcCCCC
Q psy17657 43 KFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRV--RKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDH 120 (652)
Q Consensus 43 ~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L--~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~ 120 (652)
+||+|+|+||+|++|||||||+||+++|+++|+++|++++| .+|||||||||||+||||||+||||||++++|++|+|
T Consensus 1 ~fV~e~a~l~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~~~~~~n~~l~~sdp~DvARve~~TfI~t~~~~d~~p~~ 80 (586)
T PF00821_consen 1 EFVAEVAELCQPDSIYICDGSEEENDRLRDELVEQGEEIPLNPPKHPNCYLHRSDPSDVARVESRTFICTEDKEDAGPTN 80 (586)
T ss_dssp HHHHHHHHHH-BSEEEE----HHHHHHHHHHHHHTTSEEEE-TTTSBSEEEE---TTSSS--GGGEEEE-SSHHHHSTTS
T ss_pred CHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHHcCCEEeCCCCCCCCcEEEecCccccceecCceEEEcCCccccCCcc
Confidence 69999999999999999999999999999999999999999 6899999999999999999999999999999999998
Q ss_pred CCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcccccHHHHHHhc
Q psy17657 121 KPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIA 200 (652)
Q Consensus 121 ~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMtR~g~~v~~~lg 200 (652)
|||+|++|+++|+++|+|||+|||||||||||||+|||+|++|||||||||||||||||||||++|||+||
T Consensus 81 ---------nw~~~~~~~~~l~~~f~G~M~GRtMyVipfsmGP~gsp~s~~gVqlTDS~YVv~sm~imtR~g~~v~~~l~ 151 (586)
T PF00821_consen 81 ---------NWMDPEEMKAELDELFPGCMKGRTMYVIPFSMGPIGSPFSKIGVQLTDSPYVVHSMRIMTRMGYAVLDRLG 151 (586)
T ss_dssp ---------SEE-HHHHHHHHHCCSTTTTTTSEEEEEEEEESSTTSTT-EEEEEEES-HHHHHHHHHHSEESHHHHHHHT
T ss_pred ---------CCCCHHHHHHHHHHhchhhhhhchHHhhHhhhCCCCCCCccceEEccCcHHHHHhHHHHHhcCHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeeecccCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ce
Q psy17657 201 KNDEFVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NN 273 (652)
Q Consensus 201 ~~~~Fv~cvHSvG~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HM 273 (652)
++++|||||||||+||+.++.+++|||||+++||+|||++|+|||||||||||||||||||||||||+||| ||
T Consensus 152 ~~~~Fv~~vHSvG~pl~~~~~~~~wpcn~~~~~I~h~p~~~~I~S~gsgYGGNaLlgKKc~aLRiAs~~ar~eGWLAEHM 231 (586)
T PF00821_consen 152 DDGEFVRCVHSVGAPLPPGQKDVNWPCNPDKRYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVIARDEGWLAEHM 231 (586)
T ss_dssp TT--SEEEEEE-S--SSTSS--BTB---GGG-EEEEECCCTEEEEES--SHHHHSTCCCCCCCHHHHHHHHHHT-EEESE
T ss_pred CCCceEeeecccCCcCCCCCCCCCCCCCccceEEEEECCCCeEEEeCCCcCcchhhhhhhhhHHHHHHHHHhhhHHhhhh
Confidence 88999999999999999998889999999999999999999999999999999999999999999999998 99
Q ss_pred eEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCH
Q psy17657 274 RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNP 353 (652)
Q Consensus 274 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP 353 (652)
||||||||+||++||||||||||||||||||.||+||||||||||||||||||+||||||||||+||||||||||++|||
T Consensus 232 lIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dG~lrAiNPE~GfFGVapGtn~~tnP 311 (586)
T PF00821_consen 232 LILGITNPEGRKTYIAAAFPSACGKTNLAMLQPTLPGWKVETVGDDIAWMRFGEDGRLRAINPENGFFGVAPGTNMKTNP 311 (586)
T ss_dssp EEEEEE-TTS-EEEEEEE-TTTSSHHHHHT---SSTT-EEEEEESS-EEEEE-TTSBEEEE---SEEEEE-TT-STTT-H
T ss_pred heeeEecCCCCEEEEEEecCcccccccHHhcCCCCCCcEEEEeeccchheeEcCCCcEEEeecccceEEeccCCCCCCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q psy17657 354 QAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQG 433 (652)
Q Consensus 354 ~am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~G 433 (652)
|||++|.+||||||||+|+||+||||||++++|+ +++||+|++|+|++++||||||||||+|++|||+|||+||||+|
T Consensus 312 ~am~~l~~ntIFTNVa~t~dG~vwWeG~~~~~p~--~~~dw~G~~W~~~~~~paaHPNsRft~pa~qcp~i~p~wedp~G 389 (586)
T PF00821_consen 312 NAMATLGKNTIFTNVALTDDGDVWWEGMDEEPPE--HLIDWQGEPWTPESGEPAAHPNSRFTAPASQCPNIDPEWEDPKG 389 (586)
T ss_dssp HHHHHTTBSEEEES-EEETTS-EE-TT-SS---T---EE-TTSSEE-TTSSS-SS-TT-EEEEEGGGSTTB-TTTT-TT-
T ss_pred HHHHHhhccceEeeeeecCCCceeeccCCCCCCc--ccccCCCCcCCCCCCCCCCCCcccccCCHhHCCCCCccccCCCc
Confidence 9999999999999999999999999999999884 89999999999999999999999999999999999999999999
Q ss_pred ceeEEEEecccCCCCCcceEeeCCCcchhhhhccchhhhhhcccccCcceecCCcccCCCCCCChHHHHHHHHccccCCC
Q psy17657 434 VPISAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPN 513 (652)
Q Consensus 434 VPIsAiiFGGRr~~tvPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~~g~v~~DPmAMlpF~gyn~gdY~~hWL~~g~~~~ 513 (652)
||||||||||||++|||||+|||||+||||+||||+||+||||+|++|++|||||||||||||||||||+|||+|+++.+
T Consensus 390 VpIsaiiFGGRr~~tvPlV~ea~~W~HGV~~gAtm~SE~TAAa~g~~g~~~~dPmAmlpF~gy~~gdY~~hwL~~~~~~~ 469 (586)
T PF00821_consen 390 VPISAIIFGGRRSDTVPLVYEAFNWQHGVFLGATMRSEATAAAEGKVGVVRRDPMAMLPFCGYNMGDYLQHWLSMGKKLG 469 (586)
T ss_dssp EEEEEEEEEEBBSSSS-SEEE-SSHHHHHHHHHT-EEEE-TTSSS-TTEEEE-GGGTTTT-SS-HHHHHHHHHHHGGSTT
T ss_pred ceEEEEEEeccCCCCCCceEEccCCCceeEEeeeecccccchhccCCCceecCCccccccCcCCHHHHHHHHHHhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred CCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccceeeCccccCcCCCCCCCccCCCCCCCCCChhhhHH
Q psy17657 514 VKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLK 593 (652)
Q Consensus 514 ~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a~eTPiG~iP~~~~~~ldl~gL~~~~k~~~~~~~~ 593 (652)
.|+||||||||||||++|||||||||||+|||+||++|++|+ +.|++||||+||+| ++|||+||+++ +++|+
T Consensus 470 ~k~PkIF~VNwFrk~~~G~flWPGfgen~RVL~Wi~~R~~g~-~~a~~TPiG~iP~~--~dL~~~gl~~~-----~~~~~ 541 (586)
T PF00821_consen 470 RKLPKIFHVNWFRKDEDGKFLWPGFGENSRVLKWIERRVEGE-VEAVETPIGYIPKY--EDLDLDGLDLS-----KEDYE 541 (586)
T ss_dssp GBS-EEEEEEST-B-TTSSBSS--GGGHHHHHHHHHHHHTTS-S-EEEETTEEEE-T--TTS--TTSSST-----TCTHH
T ss_pred cCCCcEEEEEeeEEcCCCccccCCCcccHHHHHHHHHHhcCc-cceeeCCCEecCCc--cccCCccCCCC-----HHHHH
Confidence 799999999999999999999999999999999999999999 99999999999999 99999999865 88999
Q ss_pred HhhccChHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHh
Q psy17657 594 ELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKS 639 (652)
Q Consensus 594 ~l~~v~~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl~~ 639 (652)
+||+||+++|++|++++++||++ +|++||++|+++|++|++||++
T Consensus 542 ~lfsv~~~~W~~E~~~~~~~~~~-~g~~lP~~l~~~l~~l~~rl~~ 586 (586)
T PF00821_consen 542 ELFSVDKDFWLAEIEEIREYFDK-FGDDLPKELFEELEELEKRLKK 586 (586)
T ss_dssp HHT---HHHHHHHHHHHHHHHHH-HGGGS-HHHHHHHHHHHHHHHT
T ss_pred HhcCcCHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHHHHHHhhC
Confidence 99999999999999999999985 5999999999999999999975
No 4
>cd00819 PEPCK_GTP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the GTP-dependent group.
Probab=100.00 E-value=5e-261 Score=2086.17 Aligned_cols=569 Identities=59% Similarity=1.095 Sum_probs=556.8
Q ss_pred HHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCC
Q psy17657 41 LLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDH 120 (652)
Q Consensus 41 v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~ 120 (652)
|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||+.|||||||||||+||||||+||||||++++|+||+|
T Consensus 1 l~~~v~e~~~l~~Pd~v~~cdGS~ee~~~l~~~~v~~G~~~~L~~~~~~~l~rs~p~DvARve~rTfI~s~~~~dagp~n 80 (579)
T cd00819 1 LLEWVEEAAELCQPDSVYICDGSEEEYDRLRDLMVEQGEEIRLNKYPNSYLARSDPSDVARVESRTFICSEDEEDAGPTN 80 (579)
T ss_pred CHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhcCcEeeCCCCCCCEEEeCCccccceeccceEEecCchhccCCcc
Confidence 57999999999999999999999999999999999999999999899999999999999999999999999999999998
Q ss_pred CCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcccccHHHHHHhc
Q psy17657 121 KPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIA 200 (652)
Q Consensus 121 ~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMtR~g~~v~~~lg 200 (652)
|||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||||||||||||++||+.||
T Consensus 81 ---------nw~~p~e~~~~l~~lf~G~M~GRTMYVipfsmGP~gSp~s~~gVqiTDS~YVv~sm~imtR~g~~vl~~lg 151 (579)
T cd00819 81 ---------NWMDPEEMKAELKELFKGCMRGRTMYVIPFSMGPLGSPISKIGVELTDSPYVVHSMRIMTRMGKAVLDALG 151 (579)
T ss_pred ---------ccCCHHHHHHHHHhhCCcccCCCeEEEEeeecCCCCCCcccceEEEeCCHHHHHhHHHHHhcCHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCeeeeeecccCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ce
Q psy17657 201 KNDEFVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NN 273 (652)
Q Consensus 201 ~~~~Fv~cvHSvG~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HM 273 (652)
+ ++|||||||||+||+.++.+ +|||||+||||+|||++|+|||||||||||||||||||||||||++|| ||
T Consensus 152 ~-~~Fv~~vHSvG~pl~~~~~~-~wpcn~~~~~I~h~pe~~~I~S~gSgYGGNaLlgKKcfaLRiAs~~ar~eGWLAEHM 229 (579)
T cd00819 152 E-GEFVPCLHSVGAPLSAGQKD-VWPCNPEKKYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVMARDEGWLAEHM 229 (579)
T ss_pred c-CCeeeeeccCCCcCCCCCCC-CCCCCCCccEEEEEcCCCeEEEecCCcCCCcccchhHHHHHHHHHHhHhcCcHHHhh
Confidence 7 89999999999999999877 899999999999999999999999999999999999999999999998 99
Q ss_pred eEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCH
Q psy17657 274 RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNP 353 (652)
Q Consensus 274 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP 353 (652)
||||||||+|+++||||||||||||||||||.|++|||||+||||||||||+++||+|||||||+||||||||||++|||
T Consensus 230 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~~gwkv~~vGDDIAwm~~~~dG~l~AINPE~GfFGVapGtn~~tnP 309 (579)
T cd00819 230 LILGVTNPEGEKKYFAAAFPSACGKTNLAMLIPPLPGWKVETVGDDIAWMKFGEDGRLYAINPEAGFFGVAPGTNAKTNP 309 (579)
T ss_pred HHheeeCCCCCEEEEEEEcccccccccHhhcCCCCCCceeEEeccceeeeEECCCCcEEEEcCCCCeeEeCCCCCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecC--CCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCC
Q psy17657 354 QAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWL--GRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSP 431 (652)
Q Consensus 354 ~am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~--G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP 431 (652)
|||++|++||||||||+|+||+||||||++++| .+++||+ |++|+++++.||||||||||+|++|||+|||+||||
T Consensus 310 ~am~~l~~n~IFTNVa~t~DG~vwWeG~~~e~p--~~~~~w~~~G~~w~~~~~~paAHPNsRFt~p~~q~p~idp~wedP 387 (579)
T cd00819 310 NAMATLHKNTIFTNVALTEDGDVWWEGLTEEPP--EHLTDWQGLGKRWTPGDGEPAAHPNSRFTAPASQCPNIDPEWENP 387 (579)
T ss_pred HHHHHhcCCceEEEEeEcCCCCeeCCCCCCCCC--CceeeccCCCCCCCCCCCCcCCCCcccccccHHHCCcCCccccCC
Confidence 999999999999999999999999999999887 6899999 999999999999999999999999999999999999
Q ss_pred CCceeEEEEecccCCCCCcceEeeCCCcchhhhhccchhhhhhcccccCcceecCCcccCCCCCCChHHHHHHHHccccC
Q psy17657 432 QGVPISAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKR 511 (652)
Q Consensus 432 ~GVPIsAiiFGGRr~~tvPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~~g~v~~DPmAMlpF~gyn~gdY~~hWL~~g~~ 511 (652)
+|||||||||||||++|+|||+|||||+||||+||+|+||+||||+|++|++|||||||||||||||||||+|||+||++
T Consensus 388 ~GVpI~aiiFGGRr~~tvPlV~ea~~W~hGV~~GA~m~SE~TAAa~g~~g~~r~dPmAmlPF~gy~~gdY~~hwL~~g~~ 467 (579)
T cd00819 388 EGVPIDAIIFGGRRPDTVPLVYEAFNWNHGVFIGASMGSETTAAAEGKVGVVRRDPFAMLPFCGYNMGDYFRHWLSFGRK 467 (579)
T ss_pred CCCEEEEEEECCcCCCCCCeEEEccCcccceeeechhhhHHHHHhhcCCCcEEeCcccccccCCCCHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccceeeCccccCcCCCCCCCccCCCCCCCCCChhhh
Q psy17657 512 PNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVN 591 (652)
Q Consensus 512 ~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a~eTPiG~iP~~~~~~ldl~gL~~~~k~~~~~~ 591 (652)
++.|+||||||||||||++|||||||||||+|||+||++||+|+ +.|++||||+||++ ++|||+||+++ .++
T Consensus 468 ~~~~~PkIF~VNwFrkd~~G~flwpgfgdn~rvL~Wi~~R~~g~-~~a~eTpiG~iP~~--~~ldl~gL~~~-----~~~ 539 (579)
T cd00819 468 LGAKLPKIFGVNWFRKDEDGKFLWPGFGENSRVLKWIFRRVEGK-ANAIETPIGYIPKY--GDLDLKGLGKS-----KLD 539 (579)
T ss_pred ccCCCCcEEEEeeeeecCCCCCcCCCccchhhHHHHHHHHhcCC-cCceecCCeecCCc--cccCccCCCCc-----hhh
Confidence 75699999999999999999999999999999999999999999 99999999999999 99999999754 566
Q ss_pred HHHhhccChHHHHHHHHHHHHHHhhhhCC-CCCHHHHHHHHHH
Q psy17657 592 LKELFYIDKDFWEQELNAIEKYFNDQVGS-DLPPAIHAEISGL 633 (652)
Q Consensus 592 ~~~l~~v~~~~W~~E~~~i~~~~~~~~g~-~lP~~i~~~l~~l 633 (652)
+ ||++++++|++|+.++++||+ ++|. +||++|+++|++|
T Consensus 540 ~--l~~~~~~~w~~e~~~i~~~~~-~~~~~~lP~~l~~~l~~l 579 (579)
T cd00819 540 F--LFSVDEDYWLQELIEIEEYLE-KIGRADLPQELFDELEAL 579 (579)
T ss_pred h--hcCCCHHHHHHHHHHHHHHHH-HhCCCCCCHHHHHHHhcC
Confidence 6 999999999999999999998 5677 9999999999875
No 5
>COG1274 PckA Phosphoenolpyruvate carboxykinase (GTP) [Energy production and conversion]
Probab=100.00 E-value=7.9e-259 Score=2028.11 Aligned_cols=591 Identities=52% Similarity=0.972 Sum_probs=576.6
Q ss_pred cceecCCcCCCCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccc--cccCeEEeccCCCCcccccc
Q psy17657 27 FDLVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVR--KHVNCWLASTNPADVARVED 104 (652)
Q Consensus 27 ~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~--k~~n~~l~rsdP~DvARve~ 104 (652)
++-+..+-...|+.+++||+|+|+||+|++||+||||+||+|+|+++|++.|++++|+ |+|||||+||||+||||||+
T Consensus 6 ~~~l~~~~~i~n~~l~~wi~ev~~l~~P~~V~~cdGS~eE~~~l~~~~v~aG~~i~Ln~~~~pn~~l~~s~psDvAR~e~ 85 (608)
T COG1274 6 IDGLDKLAPINNQGLKSWIEEVAELTEPDDVVVCDGSPEEYDYLCWKMVEAGEEIKLNPEKHPNSYLARSNPSDVARVEE 85 (608)
T ss_pred ccccccccccccHHHHHHHHHHHHhcCCCeEEEeCCCHHHHHHHHHHHHhcCceeecCcccCCCceEeecChhhhhhhhh
Confidence 3444555678999999999999999999999999999999999999999999999997 79999999999999999999
Q ss_pred ceEEEecCCCCcCCCCCCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhh
Q psy17657 105 KTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVAS 184 (652)
Q Consensus 105 rTfI~t~~~~da~p~~~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~s 184 (652)
||||||++++||||+| |||+|+||+++++++|+|||||||||||||||||++||++++|||||||+|||||
T Consensus 86 rTfI~s~~~~~agPtn---------Nw~~p~e~~~~m~~l~~G~MrGrtmyVvpf~mGP~~Spf~~~gVeiTDS~YVv~s 156 (608)
T COG1274 86 RTFICSPKEEDAGPTN---------NWMDPQEMRSEMNELFRGCMRGRTMYVVPFCMGPLNSPFTILGVELTDSPYVVHS 156 (608)
T ss_pred ceeeecccccccCCcc---------CCCCHHHHHHHHHHHHHhhhcCceEEEEeeeeCCCCCCcccceeEeecCceeeee
Confidence 9999999999999998 9999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccHHHHHHhcCCCCeeeeeecccCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhh
Q psy17657 185 MRIMTRMGKAVLDEIAKNDEFVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALR 264 (652)
Q Consensus 185 mrIMtR~g~~v~~~lg~~~~Fv~cvHSvG~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALR 264 (652)
|+||||||++||+.||+++.|||||||||.||.+++.+++||||+ .+||.||||+++||||||||||||||||||+|||
T Consensus 157 m~imtRmG~~vl~~lG~~g~Fvk~vHSvG~pL~pg~~dv~wPcn~-~k~i~hfped~~v~S~gsgYGGNall~KKC~ALR 235 (608)
T COG1274 157 MRIMTRMGKEVLEKLGDDGNFVKCVHSVGKPLDPGQKDVAWPCNE-TKYIRHFPEDREVWSFGSGYGGNALLGKKCLALR 235 (608)
T ss_pred hHHHHHHHHHHHHhcCCCCceeeeeeccCCCCCCCcccCcCCccc-ccceeecCCCcceEeecCCccchhhhhhhHHHHH
Confidence 999999999999999999999999999999999999999999995 5699999999999999999999999999999999
Q ss_pred hhhcccc-------ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCC
Q psy17657 265 INQVKEP-------NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPE 337 (652)
Q Consensus 265 iAS~~ar-------HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE 337 (652)
|||++|| |||||+|+||+||++||+|||||||||||||||.|++||||++|||||||||||+.||+|||||||
T Consensus 236 ias~~A~~EGWLAEHMlil~v~~PeGk~~yftaAFPSacGKTnlAMi~p~~pGWk~~~igDDIawik~~~DG~lyAvNPE 315 (608)
T COG1274 236 IASVMARDEGWLAEHMLILGVTNPEGKKYYFTAAFPSACGKTNLAMIPPTIPGWKAETIGDDIAWIKFGKDGRLYAVNPE 315 (608)
T ss_pred HHHHHhhhhhhHhhhheeeEecCCCCceEEEEeecccccCccchhhcCCCCCCcceeeccCceeeeeccCCCceEeeccc
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCCCCCHHHHhhcc-CCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCC-CCCCCCCCCCccc
Q psy17657 338 SGFFGVAPGTSCNTNPQAMQTIF-HNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKN-CSTPAAHPNSRFC 415 (652)
Q Consensus 338 ~GfFGVapGtn~~tnP~am~~l~-kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~-~~~paAHPNsRFt 415 (652)
+||||||||||++||||||++|+ .|+||||||+|+|||||||||+.++| .+++||+|+.|.++ .++||||||||||
T Consensus 316 ~GfFGVapGtn~~tnpnam~tl~~~n~IFTNV~lT~DGdvwWEG~~~~~p--~~l~dw~G~~w~~~~~g~paAHpNsRft 393 (608)
T COG1274 316 IGFFGVAPGTNEKTNPNAMATLHSGNTIFTNVALTDDGDVWWEGLEGEPP--EELIDWKGNDWRPGETGEPAAHPNSRFT 393 (608)
T ss_pred cceEEeecCCCccCChhHHHHhccCceEEeeeeecCCCCccccCCCCCCc--cccccCCCCccCCCCCCCCCCCCCcccc
Confidence 99999999999999999999998 89999999999999999999999877 57999999999995 5889999999999
Q ss_pred ccCCCCCCCCCCCCCCCCceeEEEEecccCCCCCcceEeeCCCcchhhhhccchhhhhhcccccCcceecCCcccCCCCC
Q psy17657 416 VPAAECPAMDPDWQSPQGVPISAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFG 495 (652)
Q Consensus 416 ~pa~qcp~idp~wedP~GVPIsAiiFGGRr~~tvPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~~g~v~~DPmAMlpF~g 495 (652)
+|++|||++||+||||+|||||||||||||++|||||+|||||+|||||||+|+||+|||++||+|++||||||||||||
T Consensus 394 ~pl~~~P~ld~ew~dP~GVpi~aiiFGgRr~~TvPlV~EA~~W~HGV~mGA~m~Se~TAA~~Gk~G~lr~dPmAmLpF~g 473 (608)
T COG1274 394 VPLSQCPNLDPEWDDPEGVPIDAIIFGGRRPTTVPLVTEAFDWEHGVFMGATMGSETTAAAEGKVGVLRRDPMAMLPFCG 473 (608)
T ss_pred cchhhCCccCccccCCCCceEeeEEecCcCCcccCceeeecccccceeeeeccccchhhhhhccccceecCcchhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccceeeCccccCcCCCCCCC
Q psy17657 496 YNFGQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVI 575 (652)
Q Consensus 496 yn~gdY~~hWL~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a~eTPiG~iP~~~~~~l 575 (652)
|||||||+|||+||++.++|+||||.|||||||++|+|||||||||+|||+||++|++|+ +.|++|||||||+| ++|
T Consensus 474 yn~~dYf~hwl~~G~k~~~k~PKIF~VNwFrr~e~G~Flwpgf~en~rvL~Wi~~R~e~~-~~a~eTpIG~iP~~--edL 550 (608)
T COG1274 474 YNMGDYFRHWLEFGRKLRDKLPKIFGVNWFRRGEDGRFLWPGFGENSRVLKWIVDRIEGD-ANAIETPIGYIPKY--EDL 550 (608)
T ss_pred ccHHHHHHHHHHHHHhhhccCCcEEEEEeEEEcCCCcEeCCCcccchhhhhhHHHHhccc-cCccccccccccch--hhc
Confidence 999999999999999976699999999999999999999999999999999999999999 99999999999999 999
Q ss_pred ccCCCCCCCCCChhhhHHHhhccChHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHH
Q psy17657 576 NLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLK 638 (652)
Q Consensus 576 dl~gL~~~~k~~~~~~~~~l~~v~~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl~ 638 (652)
|++|||++ .+|+++||+||.+.|++|+++|+|||. +||+++|++|.+||+.|++||.
T Consensus 551 ~~~Gld~s-----~ed~~~~f~id~~~w~~e~~~I~e~~~-~~g~~iP~~l~~e~~~~k~Rl~ 607 (608)
T COG1274 551 NLDGLDYS-----KEDVEKLFTIDAEGWLAEIERIWEYYS-FFGNKIPEELLDELEALKERLG 607 (608)
T ss_pred ccccccCC-----HHHHHHHhCcCHHHHHHHHHHHHHHHH-HhcccCcHHHHHHHHHHHHHhc
Confidence 99999865 999999999999999999999999997 8999999999999999999996
No 6
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=100.00 E-value=2.1e-116 Score=957.99 Aligned_cols=490 Identities=42% Similarity=0.667 Sum_probs=458.2
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhc-CcccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCCCCCccCcccccCC
Q psy17657 55 KDIHICDGTEEENKAILKKMVDT-NTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWIS 133 (652)
Q Consensus 55 ~~I~icdGS~eE~~~l~~~~~~~-G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~~Gv~~~l~nw~~ 133 (652)
+.||+|+ +.++|.++++++ |+.+.+ +|++|++++|.|+||++++||||++++.+++|.-++|. +..|+|++
T Consensus 1 ~~v~~n~----~~~~L~e~~~~~~g~~~~~---~~g~l~~~tg~~tgRsp~dkfIv~~~~~~~~~~w~~~w-~~~N~~~~ 72 (515)
T cd01919 1 DHIHIND----ENGRLLQQMLEEYGILRLT---KNGALAVTDPRDTGRSPSDKVIVTQDQRRTVPIPKTGL-SQLNRWLS 72 (515)
T ss_pred CceEECC----CHHHHHHHHHHhcCCEEEC---CCceEEECCCCccccCCCceEEeCCCccccCccccccc-cccCCCCC
Confidence 4699999 788999999999 988887 69999999999999999999999999999999655555 55689999
Q ss_pred HhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcccccH-HHHHHhcCCCCeeeeeecc
Q psy17657 134 PADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGK-AVLDEIAKNDEFVRALHSV 212 (652)
Q Consensus 134 p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMtR~g~-~v~~~lg~~~~Fv~cvHSv 212 (652)
++++++.+..+|++||+||||||+||+||| ++++++.++|||||+||+|+||+|+|++. ++|+.++. .|++|+||+
T Consensus 73 ~~~~~~~~~~~~~~~m~gr~myV~d~~~G~-~~~~~~~~r~it~~ay~~lf~~~m~~~p~~~~l~~~~~--p~~~ii~~~ 149 (515)
T cd01919 73 EEDFEKAFNARFPGLMKGRTLFVVDFFMGP-GSPLRLIVRELTDSPYVAAFMRIMTIMPTDEELAAFGD--PDVKCLNSV 149 (515)
T ss_pred HHHHHHHHHHHHHHHhcCCCEEEEeceECC-CCcccccEEEEEChHHHHHHHHHhccCCChHHHhhCCC--CCEEEEeCC
Confidence 999999999999999999999999999999 99999999999999999999999999999 77887763 799999999
Q ss_pred cCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ceeEeeeeCCCCcE
Q psy17657 213 GTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NNRILGVTNPEGKK 285 (652)
Q Consensus 213 G~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HMlIlgvt~P~G~~ 285 (652)
|.|+++.+ |||++.+++|+|+|++|+|||+||+||| ++|||+ ||++++++. ||.+++++++ +
T Consensus 150 g~~~~~~~----w~g~~s~~~I~~~~~~~~i~i~Gt~Y~G---e~KK~~-l~~~~~l~~~~g~L~~H~s~~~~~~g--~- 218 (515)
T cd01919 150 GCPLPLQK----WPGLPSLTLVAHNPDRREQIIFGTGYGG---EMKKGF-LRMMSRLAPEEGWLAMHMSANVGTNG--D- 218 (515)
T ss_pred CCcCCccC----CCCCCCCcEEEEEcccCEEEEecCcccc---chHHHH-HHHHHHHHHhcCceeeeceeeccCCC--C-
Confidence 99987653 9999988999999999999999999999 789997 999999886 9999987654 3
Q ss_pred EEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHHHhhccCCcee
Q psy17657 286 MFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMF 365 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~am~~l~kntIF 365 (652)
+++.++|||||||+|||. |++++|||||+||+. || ++|||.|+||+++|+|.++||++|++|+.++||
T Consensus 219 -~~~~~GlSGtGKTTLa~~------~~~~ligDD~~~w~~--~g---v~N~EgGcyak~~gls~e~eP~i~~ai~~~ail 286 (515)
T cd01919 219 -VLVFFGLSGTGKTTLSMD------PKRELIGDDEHWWKD--DG---VFNPEGGCYAKAIGLSVKTEPNIYKAIRKNAIF 286 (515)
T ss_pred -EEEEEecccCCCcccccC------CCcCeecccEEEEeC--CC---EEecCCceEEEecCCCcccCHHHHHHhcCCcEE
Confidence 899999999999999997 788999999999974 67 999999999999999999999999999999999
Q ss_pred eeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceeEEEEecccC
Q psy17657 366 TNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRR 445 (652)
Q Consensus 366 TNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GVPIsAiiFGGRr 445 (652)
+||++++||+|||++++ +|||+|||.|+++||+++++|++ ||||++|||+|||
T Consensus 287 eNV~~d~~g~v~~~~~s-------------------------~t~NtR~~yP~~~i~n~~~~~~~--g~~~~~IiFltrd 339 (515)
T cd01919 287 ENVAETSDGGIDFEDIS-------------------------AHPNTRVCYPASHIPIIDAAWES--AGHIEGVIFLTRD 339 (515)
T ss_pred EeeeEcCCCCEeCCCCC-------------------------CCchheEEeEHHhCCCCCCcccc--CCCccEEEEEecC
Confidence 99999999999999875 89999999999999999999999 9999999999999
Q ss_pred CC-CCcceEeeCCCcchhhhhccchhhhhhc--ccccCcceecCCcccCCCCCCChHHHHHHHHccccCCCCCCCcEEEe
Q psy17657 446 PE-GVPLVYEAFDWQHGVFVGASMRSEATAA--AEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNVKLPKIFHV 522 (652)
Q Consensus 446 ~~-tvPLV~ea~~W~HGVf~gAsm~SE~TAA--a~g~~g~v~~DPmAMlpF~gyn~gdY~~hWL~~g~~~~~k~PkIF~V 522 (652)
++ ++|||.+++ |+||||.++++.||+||| +.++.+++++|||+|+|||+|++++|.+||+++.++ +.|+||.|
T Consensus 340 a~gvlPpV~~lt-~eqavy~f~sg~T~ktAgteag~~~p~~~fs~cf~~PFl~~~p~~Ya~~l~e~~~~---~~~~i~lv 415 (515)
T cd01919 340 AFGVVPPVYRLT-WQQGVFVFAAGRTAATAGTEAGHKGKIPMFSPCFGRPFLGYHFTKYLEHLLSMMQH---PLPKIFLV 415 (515)
T ss_pred CCCCCCcEEEcc-HHHHHHHHHhhhhhhhcchhcccccCceeecccccCCcccCCHHHHHHHHHHHHhh---cCCcEEEE
Confidence 99 999999999 999999999999999999 778899999999999999999999999999999876 45999999
Q ss_pred eeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccceeeCcc--ccCcCCCCCCCccCCCCCCCCCChhhhHHHhhccCh
Q psy17657 523 NWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPI--GYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDK 600 (652)
Q Consensus 523 NwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a~eTPi--G~iP~~~~~~ldl~gL~~~~k~~~~~~~~~l~~v~~ 600 (652)
|||++|.+|+++|||+++|.|||+||++|+.++ +.++++|| |+||++ +++.++++ +++.++.+.++++.
T Consensus 416 Ntg~~gg~G~g~r~~~~~tr~il~~i~~g~~~~-~~~~~~pif~~~iP~~----~~gv~~~~----l~p~~~w~~~~~~~ 486 (515)
T cd01919 416 NTGRKGKEGKFKRPGFGETRAIIDAIFNGILDK-AETKLTPIFNLYIPKA----LNLVGLGH----LNPRNMMELFSQSK 486 (515)
T ss_pred eccccCCCCCcccCCHHHHHHHHHHHHhCCcCC-CCeEEccccCEEeCcc----cCCCCccc----CCHHHhhhhhhhhH
Confidence 999999889999999999999999999999999 99999999 999998 56666652 13788889999999
Q ss_pred HHHHHHHHHHHHHHhhhhC
Q psy17657 601 DFWEQELNAIEKYFNDQVG 619 (652)
Q Consensus 601 ~~W~~E~~~i~~~~~~~~g 619 (652)
+.|+++++..+++|+ ||.
T Consensus 487 ~~~~~l~~~f~~nf~-~~~ 504 (515)
T cd01919 487 EFWDKLVEDFEKYFV-DQV 504 (515)
T ss_pred HHHHHHHHHHHHHHH-Hhc
Confidence 999999999999998 563
No 7
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.68 E-value=1.1e-17 Score=151.17 Aligned_cols=64 Identities=30% Similarity=0.270 Sum_probs=51.6
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceee
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFG 342 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFG 342 (652)
|..-+.+.. | .+++-..|||||||+|+++.+ ..++++.|||+++|+.++.+++++++||.+|++
T Consensus 6 ~~vsl~i~~--g--e~v~I~GpSGsGKSTLl~~l~---~G~i~~~g~di~~~~~~~~~~~~~~~~q~lf~~ 69 (107)
T cd00820 6 HGVLVDVYG--K--VGVLITGDSGIGKTELALELI---KRKHRLVGDDNVEIREDSKDELIGRNPELGLEI 69 (107)
T ss_pred EeeEEEEcC--C--EEEEEEcCCCCCHHHHHHHhh---CCeEEEeeEeHHHhhhhhcCCEEEEechhcchh
Confidence 454444432 4 455666999999999998876 558999999999999888999999999998764
No 8
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=99.55 E-value=2.5e-11 Score=134.95 Aligned_cols=478 Identities=19% Similarity=0.228 Sum_probs=288.2
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCCCCCcc-Ccccc
Q psy17657 52 CKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVK-SQLGN 130 (652)
Q Consensus 52 ~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~~Gv~-~~l~n 130 (652)
+++..||+.- |.+ +|+++++++..+-.|. ..|..++.|.. =..|.-...||+-+...+.. |- +..|.
T Consensus 39 ~~~~~i~~Nl-~~~---~L~E~al~~~~~g~~t-~~GaL~v~TG~-~TGRSpkDKfIV~~~~~~d~------i~Wg~vN~ 106 (561)
T PTZ00311 39 LHNTTIHRNL-TVP---ELYEHALKYEKNTSIT-STGALCVYSGA-KTGRSPKDKRIVKEDSSEDD------IWWGKVNI 106 (561)
T ss_pred CCCCeEEeCC-CHH---HHHHHHHhhcCCcEEe-cCCceEEecCC-ccCCCCCceEEeCCCCcccc------cccCccCc
Confidence 4566777665 443 4677777322222332 13444444432 25677777888843322211 10 12347
Q ss_pred cCCHhhHHHHHHhcCCCcc-CCCeeEEEecccCCCCCCCCcceee-ccCchHHHhhhhhccc-ccHHHHHHhcCCCCeee
Q psy17657 131 WISPADYDEAIKTRFPGCM-KDRTMYVIPFSMGPVGSPLSKVGVE-ITDSPYVVASMRIMTR-MGKAVLDEIAKNDEFVR 207 (652)
Q Consensus 131 w~~p~~~~~~l~~~f~G~M-~GRTMYViPfsmGPigSp~s~~GVq-lTDS~YVv~smrIMtR-~g~~v~~~lg~~~~Fv~ 207 (652)
-++++++..-+++. ---+ ++|.+||+==-+|- .|-..+-|. ||..+|-.+-|+=|.. --.+.+...+ ..|.+
T Consensus 107 p~~~~~f~~L~~~~-~~yl~~~~~lyv~D~~vGa--Dp~~~l~vRvit~~a~~alF~~nmfirP~~~el~~~~--~~f~P 181 (561)
T PTZ00311 107 PLSEESFEINKKRA-IDYLNTRERLFVVDGYAGW--DPKYRLKVRVITTRAYHALFMRNMLIRPTNEELKKFG--EDFVP 181 (561)
T ss_pred cCCHHHHHHHHHHH-HHHHhcCCCEEEEeeeeec--CcccceeEEEEecHHHHHHHHHHCCCCCChHHhhccc--cCCCC
Confidence 78888887755444 3344 68999999877775 344444444 5778887776666554 3333232223 12333
Q ss_pred eeecccCCCCCCCCCCCCCCCC------cceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------cee
Q psy17657 208 ALHSVGTPSSGVHEYPHWPCDP------QRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NNR 274 (652)
Q Consensus 208 cvHSvG~Pl~~~~~~~~WPcnp------~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HMl 274 (652)
-+-.+=+| .|+||| ..++|+.+++.+.+.-.|+.|+|.. ||. .|+...++.. |.-
T Consensus 182 dftIi~~P--------~f~a~~~~~G~~se~~i~in~~~~~~lI~GT~YaGEi---KKg-iFt~~~~ll~~rg~l~lHas 249 (561)
T PTZ00311 182 DFTIYNAG--------EFKANRLIEGVTSETSVALNFKRREMVILGTQYAGEM---KKG-ILTVMMYLMPKQGVLPLHSS 249 (561)
T ss_pred CEEEEECC--------CCCCCcccCCCCcccEEEEEccCCeEEEEcccchhhh---HHH-HHHHHHHHHHHCCceeeeee
Confidence 22222222 233332 1367888899999999999999987 999 8888887775 543
Q ss_pred EeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHH
Q psy17657 275 ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQ 354 (652)
Q Consensus 275 Ilgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~ 354 (652)
-. .+.+|+..=+ ...||.|||+|+.- +|+ ..||||+. .+ ..|| ++ |-|-|.+--.-+.+.+..|.
T Consensus 250 a~--v~~~g~~~~f--fGlSGtGKtTLsa~----~~~--~li~DD~~-gW-~~~G-vf--n~EGGCYAK~i~Ls~e~EPe 314 (561)
T PTZ00311 250 AN--VGKKGDVTLF--FGLSGTGKTTLSAD----PNR--KLIGDDEH-VW-TDDG-VF--NIEGGCYAKCIDLSKETEPE 314 (561)
T ss_pred Ee--eCCCCCEEEE--EccCCCCHHHhccC----CCC--ceeecccc-cc-cCCc-eE--eecCceEEEecCCCcccChH
Confidence 33 1345654322 26899999999873 477 67999986 32 4688 44 89999999999999999999
Q ss_pred HHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCc
Q psy17657 355 AMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGV 434 (652)
Q Consensus 355 am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GV 434 (652)
++++++.++|+.||.+++++.+ .|+....-| -|.|-+-|.+..|+.... .-.|-
T Consensus 315 I~~Ai~fgavLENVv~d~~~~~---------------~df~d~s~T---------eNtR~ayP~~~I~na~~~--~~~~~ 368 (561)
T PTZ00311 315 IYNAIRFGAVLENVVLDKVTRE---------------VDFNDISIT---------ENTRCAYPLEHIPNAKIP--AVGGH 368 (561)
T ss_pred HHHhhccCceEEeeEEcCCCCc---------------ccCCCCccc---------ccceEEeEHHhccccCCC--CcCCC
Confidence 9999999999999999885221 122212222 489999999999998732 34556
Q ss_pred eeEEEEecccCCCCC-cceEeeCCCcchhhhhccchhhhhhccccc-CcceecCCccc------CCCCCCChHHHHHHHH
Q psy17657 435 PISAIIFGGRRPEGV-PLVYEAFDWQHGVFVGASMRSEATAAAEHK-GKAILNDPFAM------RPFFGYNFGQYLQHWL 506 (652)
Q Consensus 435 PIsAiiFGGRr~~tv-PLV~ea~~W~HGVf~gAsm~SE~TAAa~g~-~g~v~~DPmAM------lpF~gyn~gdY~~hWL 506 (652)
| +.|||=.|++.+| |+|..-.. +...| -=|.-+ ||...|+ .|+ ..|=|= -||+.-+-+.|-+--.
T Consensus 369 P-~~IifLT~DafGVlPPvskLt~-eQA~y--hFlsGy-TakvaGTE~Gv--tep~~tFS~CFg~PFl~l~p~~Ya~lL~ 441 (561)
T PTZ00311 369 P-KNIIFLTCDAFGVLPPVSKLTP-EQAMY--HFISGY-TAKVAGTEVGV--KEPTATFSACFGEPFLVLHPTVYAEMLA 441 (561)
T ss_pred C-CEEEEEeccccCCCCccccCCH-HHHHH--HHHccc-cccccccccCC--ccCccccccccCCcCCCCCHHHHHHHHH
Confidence 6 8899999988654 77766554 33333 111112 4444443 443 345555 7999999999966533
Q ss_pred ccccCCCCCCCcEEEeeeeecCCCCCcccCCCCc-hhHH-HHH----HHHhhcCC--ccceeeCc-ccc-CcCCCCCCCc
Q psy17657 507 DLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGD-NIRV-LDW----IFQRVNGN--KTVRRFSP-IGY-IPDYHHNVIN 576 (652)
Q Consensus 507 ~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfge-N~RV-L~W----I~~R~~G~--~~~a~eTP-iG~-iP~~~~~~ld 576 (652)
+.-+ ..--+++-|| .+-.|. .||. -.|+ |+. |-.=++|+ .+.-...| .|+ ||+.- ..++
T Consensus 442 eki~---~~~~~v~LvN---TGw~GG----~yg~~G~Ri~l~~TRaiv~ail~G~l~~~~~~~~p~Fgl~iP~~~-pgVp 510 (561)
T PTZ00311 442 EKIK---KHNTRVWLLN---TGWIGG----SYGSGGKRMPLKYTRAIIDAIHDGELKKAEYEKFPIFGLQIPKSC-AGVP 510 (561)
T ss_pred HHHH---HcCCCEEEee---cCccCC----cCCCCCcccCHHHHHHHHHHHhcCCccCCceeECCccCccccccC-CCCC
Confidence 3222 2337788888 543332 2344 3444 433 22223465 12334444 477 88862 2233
Q ss_pred cCCCCCCCCCChhhhHHHhhccChHHHHHHHHHHHHHHh---hhhCCCCCHHHHH
Q psy17657 577 LTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFN---DQVGSDLPPAIHA 628 (652)
Q Consensus 577 l~gL~~~~k~~~~~~~~~l~~v~~~~W~~E~~~i~~~~~---~~~g~~lP~~i~~ 628 (652)
.+-|+ +...| -|++.|.+.++++.+-|. +||-..+++++..
T Consensus 511 ~eiL~------Pr~~w-----~d~~ayd~~a~~La~~F~~nf~~f~~~~~~~i~~ 554 (561)
T PTZ00311 511 SELLD------PRNAW-----KDKAAFDKQLKELAAKFQKNFKKYADKASPEVLA 554 (561)
T ss_pred hhhcC------HhhcC-----CCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHh
Confidence 33332 11222 288888888887754443 2565556666653
No 9
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=99.54 E-value=1.7e-11 Score=136.13 Aligned_cols=471 Identities=18% Similarity=0.229 Sum_probs=290.6
Q ss_pred hcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCC-CcCCCCCCCccCccc
Q psy17657 51 LCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRS-DVVPDHKPGVKSQLG 129 (652)
Q Consensus 51 L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~-da~p~~~~Gv~~~l~ 129 (652)
+.+...|++.- |. +.|.+++++.++- .+. .-|...+.|.. =.+|.-..+||+-+... |..-. +.-+
T Consensus 13 ~~~~~~i~~n~-~~---~~L~e~a~~~~~g-~~t-~~Gal~~~tG~-~tGRSp~dk~iV~~~~~~~~i~w------g~~n 79 (526)
T PRK09344 13 ITNLSNVHYNL-SY---AELYEEALRRGEG-VLT-DTGALAVDTGK-FTGRSPKDKFIVRDPSTEDTIWW------GDDN 79 (526)
T ss_pred CCCcceeEeCC-CH---HHHHHHHHHcCCC-eec-cCCceEEecCC-ccCCCcCceeeecCccccccccc------cccC
Confidence 33446777744 43 3577788877743 222 24565555542 26777778888833222 11110 1123
Q ss_pred ccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCccee-eccCchHHHhhhhhcc-cccHHHHHHhcCCCCeee
Q psy17657 130 NWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGV-EITDSPYVVASMRIMT-RMGKAVLDEIAKNDEFVR 207 (652)
Q Consensus 130 nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GV-qlTDS~YVv~smrIMt-R~g~~v~~~lg~~~~Fv~ 207 (652)
+-++++.+..-+ ++.---+++|.+||++=-+|-- |--.+-| =+|+.+|-.+-|+-|. |-..+.++ ....||+=
T Consensus 80 ~~~~~~~f~~l~-~~~~~~l~~~~lyv~d~~vG~d--~~~~~~vrvi~~~a~~~lf~~nlf~~p~~~e~~--~~~Pd~~i 154 (526)
T PRK09344 80 KPISPEKFDALK-QKVLAYLSGKDLFVVDGFAGAD--PEYRLPVRVITELAWHALFVRNLFIRPSEEELA--SFEPDFTI 154 (526)
T ss_pred CCCCHHHHHHHH-HHHHHHhcCCcEEEEeeeecCC--hhHeeeEEEEecHHHHHHHHhhcCCCCChhHhc--cCCCCEEE
Confidence 557777765544 4446678889999999888863 3333333 3477777777666554 33333222 11233331
Q ss_pred eeecccCCCCCCCCCCCCCCC-------CcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ce
Q psy17657 208 ALHSVGTPSSGVHEYPHWPCD-------PQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NN 273 (652)
Q Consensus 208 cvHSvG~Pl~~~~~~~~WPcn-------p~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HM 273 (652)
- ....|+++ ++ ++|+.+++.+.++-.|+.|+|-- ||. .|+++.++.. |-
T Consensus 155 i------------~~p~~~~~~~~~g~~s~-~~i~~~~~~~~~~I~Gt~Y~GE~---KK~-~lt~~~~~l~~rg~l~lH~ 217 (526)
T PRK09344 155 I------------NAPKFKADPERDGTNSE-TFIAINFTERIVLIGGTDYAGEM---KKS-IFSVMNYLLPLKGVLPMHC 217 (526)
T ss_pred E------------EcCCCCCCccccCCCCC-ceEEEecccCeEEEEcchhHHHH---HHH-HHHHHHHHHHHCCcEeeeC
Confidence 1 11234444 44 58888899999999999999987 887 7888877664 65
Q ss_pred eEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCH
Q psy17657 274 RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNP 353 (652)
Q Consensus 274 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP 353 (652)
-- .+. .+|+. ++-...||.|||+|+.- +++ ..||||..= ++ |+-.+++ |-|.|--.-+.+.++.|
T Consensus 218 sa-~i~-~~g~~--~~ffGlSGtGKSTls~~----~~~--~li~DD~~~--~~-d~gvfn~--EgGcyaK~~dL~~~~EP 282 (526)
T PRK09344 218 SA-NVG-EEGDV--ALFFGLSGTGKTTLSAD----PNR--KLIGDDEHG--WD-DGGVFNF--EGGCYAKTINLSEEAEP 282 (526)
T ss_pred ee-ecC-CCCcE--EEEEeecCCCeeecccc----CCc--ceeccceEE--Ec-CCceEec--cceEEEEecCCCccccc
Confidence 32 122 33533 23336999999998754 576 569999863 25 6666654 99999999999999999
Q ss_pred HHHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCC
Q psy17657 354 QAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQG 433 (652)
Q Consensus 354 ~am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~G 433 (652)
.+..+++-++|..||.+++||.|.... ...| .|+|-..|.+..|+....- .|
T Consensus 283 ~I~~a~~~gavlENV~~d~~~~vdf~d----------------~s~T---------~NtR~~yP~~~i~n~~~~~---~~ 334 (526)
T PRK09344 283 EIYDAIRFGAVLENVVVDEDGTVDFDD----------------GSLT---------ENTRAAYPIEHIPNAVKPS---RA 334 (526)
T ss_pred hHhhhhccCceeeeEEECCCCcccCCC----------------Cccc---------ccceEEEEhHHhcCccccc---cC
Confidence 999999999999999999998875421 1222 5999999999999986532 33
Q ss_pred ceeEEEEecccCCC-CCcceEeeCCCcchh--h-hhccchhhhhhcccc--cCcceecCCcccCCCCCCChHHHHHHHHc
Q psy17657 434 VPISAIIFGGRRPE-GVPLVYEAFDWQHGV--F-VGASMRSEATAAAEH--KGKAILNDPFAMRPFFGYNFGQYLQHWLD 507 (652)
Q Consensus 434 VPIsAiiFGGRr~~-tvPLV~ea~~W~HGV--f-~gAsm~SE~TAAa~g--~~g~v~~DPmAMlpF~gyn~gdY~~hWL~ 507 (652)
=+..+|||=.+++. .+|+|..-. =.... | .|.| ++.|++..| ..+....-+|+ -||+.++...|-+.-.+
T Consensus 335 ~~p~~iifLt~Da~gvlPPvskLt-~eQA~y~FlsGyT--ak~agtE~G~tep~~tfs~cFg-~PF~p~~p~~ya~~L~~ 410 (526)
T PRK09344 335 GHPKNIIFLTADAFGVLPPVSKLT-PEQAMYHFLSGYT--AKVAGTERGVTEPQPTFSTCFG-APFLPLHPTVYAELLGE 410 (526)
T ss_pred CCCCEEEEEEcCCcCCCCcceeCC-HHHHHHHHHcCce--ecccccccCcccCCceeecccC-CCCcCCCHHHHHHHHHH
Confidence 34678999999986 568888774 44444 3 3876 333333322 22233446666 59999999999776444
Q ss_pred cccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHH-HHH----HHHhhcCCccc---e-eeCcccc-CcCCCCCCCcc
Q psy17657 508 LQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRV-LDW----IFQRVNGNKTV---R-RFSPIGY-IPDYHHNVINL 577 (652)
Q Consensus 508 ~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RV-L~W----I~~R~~G~~~~---a-~eTPiG~-iP~~~~~~ldl 577 (652)
.-++ .--+++-|| .+-.|. .+|...|+ |+. |..=++|. .. - ..--.|+ ||+. +
T Consensus 411 kl~~---~~~~vylvN---TGw~GG----~~g~g~ri~~~~Traii~ai~~G~-l~~~~~~~~p~fg~~vP~~------~ 473 (526)
T PRK09344 411 RIKA---HGAKVYLVN---TGWTGG----PYGTGKRISIKYTRAIINAILDGS-LDNAETTTDPIFGLAVPTS------V 473 (526)
T ss_pred HHHH---cCCCEEEEe---cccccC----CCCCCccCCHHHHHHHHHHHhcCC-ccCCCceeCCccCccCCCc------C
Confidence 3322 336777777 332221 13443443 222 33334566 32 2 2234577 7876 3
Q ss_pred CCCCCCCCCChhhhHHHhhc-cChHHHHHHHHHHH----HHHhhhhCCCCCHHHHH
Q psy17657 578 TDLYEDDKPNLNVNLKELFY-IDKDFWEQELNAIE----KYFNDQVGSDLPPAIHA 628 (652)
Q Consensus 578 ~gL~~~~k~~~~~~~~~l~~-v~~~~W~~E~~~i~----~~~~~~~g~~lP~~i~~ 628 (652)
.|++ .+-+...-. -|++.|.++++++. +.|+ ||...++++|.+
T Consensus 474 ~gv~-------~~~l~P~~~w~d~~~y~~~a~~La~~f~~nf~-~f~~~~~~~i~~ 521 (526)
T PRK09344 474 PGVD-------SEILDPRNTWADKAAYDEKAKKLARLFRENFE-KFEDTVGEEIVA 521 (526)
T ss_pred CCCC-------hHhcChhhccCCHHHHHHHHHHHHHHHHHHHH-HhccccCHHHHh
Confidence 4553 222222222 36777777777664 4554 675557777654
No 10
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=99.47 E-value=9.5e-11 Score=129.52 Aligned_cols=458 Identities=19% Similarity=0.260 Sum_probs=283.9
Q ss_pred HHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCCCCCcc-CcccccCCHhhHHHHHHhcCC
Q psy17657 68 KAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVK-SQLGNWISPADYDEAIKTRFP 146 (652)
Q Consensus 68 ~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~~Gv~-~~l~nw~~p~~~~~~l~~~f~ 146 (652)
..|.+++++.++-+-.. -|..++.|. .=..|.-...||+-+...+. .+- +..++-++++++..-+++..
T Consensus 10 ~eL~E~A~~~~eg~~t~--~GaL~v~TG-~~TGRSPkDkfIV~~~~t~~------~i~wg~vn~~~~~~~f~~L~~~~~- 79 (508)
T cd00484 10 AELYEEALKRGEGVLTS--TGALAVDTG-KKTGRSPKDKFIVDEPSSED------DIWWGKVNQPISEETFEILRERAV- 79 (508)
T ss_pred HHHHHHHHhCCCCEEec--CCCeEeccC-CccCCCCCceeEeCCCCccc------cccccccCcCCCHHHHHHHHHHHH-
Confidence 45677777776544322 244444443 23667777788883332221 111 12346788888776655543
Q ss_pred CccCCCeeEEEecccCCCCCCCCcceee-ccCchHHHhhhhhccc-ccHHHHHHhcCCCCeeeeeecccCCCCCCCCCCC
Q psy17657 147 GCMKDRTMYVIPFSMGPVGSPLSKVGVE-ITDSPYVVASMRIMTR-MGKAVLDEIAKNDEFVRALHSVGTPSSGVHEYPH 224 (652)
Q Consensus 147 G~M~GRTMYViPfsmGPigSp~s~~GVq-lTDS~YVv~smrIMtR-~g~~v~~~lg~~~~Fv~cvHSvG~Pl~~~~~~~~ 224 (652)
--.++|.+||+==.+|- .|-..+-|. ||..+|-.+-|+=|.. -..+.++... .+|+ .+=+ -.
T Consensus 80 ~yl~~~~lyv~D~~vGa--dp~~r~~vRvi~~~a~~alF~~nmfi~P~~eel~~f~--pdft----I~~~--------P~ 143 (508)
T cd00484 80 DYLNTKKLFVFDGFAGA--DPEYRLKVRVITERAWHALFMRNMFIRPTEEELENFG--PDFT----IYNA--------PK 143 (508)
T ss_pred HHhcCCCEEEEeeeeec--CcccceeeEEEECHHHHHHHHHhCCCCCChHHhccCC--cCEE----EEEC--------CC
Confidence 44566889999888886 455545444 5777887665555443 3333222211 2332 1211 23
Q ss_pred CCCCC------cceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ceeE-eeeeCCCCcEEEEEE
Q psy17657 225 WPCDP------QRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NNRI-LGVTNPEGKKMFVAA 290 (652)
Q Consensus 225 WPcnp------~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HMlI-lgvt~P~G~~~yvaa 290 (652)
|+|+| ..++|+.+++.+.+.-.|+.|+|.- ||. .|++..++.. |.-- + +.+|+. ++-
T Consensus 144 f~~~~~~~G~~s~~~iiin~~~~~~lI~GT~YaGEi---KKg-if~~~~~ll~~~g~l~lH~sanv---~~~~~~--~~f 214 (508)
T cd00484 144 FKANPETDGMNSETFVIINFAEREMVIGGTEYAGEM---KKG-IFSVMNYLLPKKGVLSMHCSANV---GKKGDV--ALF 214 (508)
T ss_pred CcCCccccCCCcccEEEEEccCCeEEEECccchhhh---HHH-HHHHHHHHHHhCCcEeecccccc---CCCCCE--EEE
Confidence 66554 2367888899999999999999987 999 7888777764 4432 2 344544 333
Q ss_pred EcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHHHhhccCCceeeeeee
Q psy17657 291 AFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGT 370 (652)
Q Consensus 291 AFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~am~~l~kntIFTNVa~ 370 (652)
..-||.|||+|+.- | .. ..||||.- .+ .+|| ++ |-|-|.+--.-|.+.+..|.++++++.++|+.||.+
T Consensus 215 fGlSGtGKtTLsa~-~--~r---~li~DDeh-gW-~~~G-vf--n~EGGcYaK~i~Ls~e~EP~I~~Ai~fgavlENVv~ 283 (508)
T cd00484 215 FGLSGTGKTTLSAD-P--NR---KLIGDDEH-GW-SDRG-VF--NIEGGCYAKCINLSEEKEPEIYNAIKFGAVLENVVV 283 (508)
T ss_pred EecCCCCHHHhccC-c--cC---Ceeccccc-cc-CCCc-eE--eecCceEEEecCCCcccChHHHHhhccCceEeeeEE
Confidence 36899999999852 2 22 78999984 32 5689 44 899999999999999999999999999999999999
Q ss_pred cCC-CcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceeEEEEecccCCCC-
Q psy17657 371 TSD-DGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRPEG- 448 (652)
Q Consensus 371 t~d-G~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GVPIsAiiFGGRr~~t- 448 (652)
+++ +.| |+.....| -|.|-+-|.+..|+....- .|=....|||=.|++-+
T Consensus 284 d~~~~~~----------------df~d~s~T---------eNtR~~yP~~~I~na~~~~---~~~~p~~iifLT~DafgV 335 (508)
T cd00484 284 DEETREV----------------DYDDDSIT---------ENTRAAYPIEHIPNAVIPG---VGGHPKNIIFLTADAFGV 335 (508)
T ss_pred cCCCCcc----------------CCCCCccc---------ccceEEeEHHHccccCCCC---cCCCCCEEEEEeccccCC
Confidence 864 222 33333444 4899999999999987653 33447889999998765
Q ss_pred CcceEeeCCCcchhhhhccchhhhhhccccc-CcceecCCcc------cCCCCCCChHHHHHHHHccccCCCCCCCcEEE
Q psy17657 449 VPLVYEAFDWQHGVFVGASMRSEATAAAEHK-GKAILNDPFA------MRPFFGYNFGQYLQHWLDLQKRPNVKLPKIFH 521 (652)
Q Consensus 449 vPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~-~g~v~~DPmA------MlpF~gyn~gdY~~hWL~~g~~~~~k~PkIF~ 521 (652)
+|+|..-.. +...| -=|.-+ ||...|+ .|+ ..|=| =-||+.-+-+.|-+--.+.-++ .--+++-
T Consensus 336 lPPvskLt~-eQA~y--~FlsGy-Tak~agTE~Gv--~ep~~tFS~cfg~PF~~~~p~~ya~~L~eki~~---~~~~v~L 406 (508)
T cd00484 336 LPPVSKLTP-EQAMY--HFLSGY-TAKVAGTERGI--TEPTATFSACFGAPFLPLHPTVYAEMLGEKIKK---HGAKVWL 406 (508)
T ss_pred CCccccCCH-HHHHH--HHHccc-cccccccccCC--cCCcccchhhcCCcCCCCCHHHHHHHHHHHHHH---cCCCEEE
Confidence 577776643 33333 111222 4444443 343 23443 3588999999997663333222 3377888
Q ss_pred eeeeecCCCCCcccCCCCchhHH-HHHH---H-HhhcCC--ccceeeCc-ccc-CcCCCCCCCccCCCCCCCCCChhhhH
Q psy17657 522 VNWFRKDKDGKFMWPGFGDNIRV-LDWI---F-QRVNGN--KTVRRFSP-IGY-IPDYHHNVINLTDLYEDDKPNLNVNL 592 (652)
Q Consensus 522 VNwFrkd~~GkfLWPGfgeN~RV-L~WI---~-~R~~G~--~~~a~eTP-iG~-iP~~~~~~ldl~gL~~~~k~~~~~~~ 592 (652)
|| .+=.|. .||.-.|+ |+.- + .=++|+ .+.-...| .|+ ||+. +.|++ .+-+
T Consensus 407 vN---TGw~GG----~yg~G~Ri~l~~Traiv~a~~~G~l~~~~~~~~~~fgl~iP~~------~~gvp-------~~~L 466 (508)
T cd00484 407 VN---TGWTGG----SYGVGKRIPLKYTRAIIDAILSGELNNAEYEKDPVFNLAIPTS------IPGVP-------SEIL 466 (508)
T ss_pred Ee---cCccCC----CCCCCccccHHHHHHHHHHHHcCCccCCCceECCccCcccccc------CCCCC-------hhhc
Confidence 88 543332 14555665 5542 2 223465 12334444 477 8886 34553 1222
Q ss_pred HHh-hccChHHHHHHHHHHHHHHh---hhhCCCCCHHHHH
Q psy17657 593 KEL-FYIDKDFWEQELNAIEKYFN---DQVGSDLPPAIHA 628 (652)
Q Consensus 593 ~~l-~~v~~~~W~~E~~~i~~~~~---~~~g~~lP~~i~~ 628 (652)
..- .=-|++.|.++++++.+-|. +||..+++++|.+
T Consensus 467 ~P~~~w~d~~~y~~~a~~La~~F~~nf~~f~~~~~~~i~~ 506 (508)
T cd00484 467 NPRNTWADKEAYDETAKKLAKLFIENFKKFADKVSEEIAA 506 (508)
T ss_pred CHhhcCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHh
Confidence 222 22378888888888765443 2676678888764
No 11
>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate. The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....
Probab=99.44 E-value=1.2e-11 Score=135.95 Aligned_cols=385 Identities=17% Similarity=0.195 Sum_probs=232.1
Q ss_pred HHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCCCCCcc-CcccccCCHhhHHHHHHhcCC
Q psy17657 68 KAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVK-SQLGNWISPADYDEAIKTRFP 146 (652)
Q Consensus 68 ~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~~Gv~-~~l~nw~~p~~~~~~l~~~f~ 146 (652)
+.|.+++++.|+-.-- ..|..++.|. +=.+|--.++||+-+.... .+ |- +..++-++++.+.+ |.++..
T Consensus 11 ~~L~e~a~~~~eg~lt--~~Gal~v~tG-~~TGRSp~dkfIV~~~~~~--~~----v~Wg~~n~~i~~e~f~~-L~~~v~ 80 (466)
T PF01293_consen 11 PELYEEAIKRGEGVLT--KTGALVVNTG-KFTGRSPKDKFIVDEPGTE--DK----VWWGSVNQPISEEQFEK-LLERVV 80 (466)
T ss_dssp HHHHHHHCHTTTEEE---TTSSEEE--T-T-SSB-GGGEEEE-STTTT--TT----S-BTTSBEEE-HHHHHH-HHHHHH
T ss_pred HHHHHHHHhcCCCEEc--cCCCEEEeCC-CccCCCCCceEEecCCccc--cc----cccccCCcccCHHHHHH-HHHHHH
Confidence 4588888886654432 2467777666 4578999999999443321 11 10 23345688988854 445557
Q ss_pred CccCCCeeEEEecccCCCCCCCCcceee-ccCchHHHhhhhhc-ccccHHHHHHhcCCCCeeeeeecccCCCCCCCCCCC
Q psy17657 147 GCMKDRTMYVIPFSMGPVGSPLSKVGVE-ITDSPYVVASMRIM-TRMGKAVLDEIAKNDEFVRALHSVGTPSSGVHEYPH 224 (652)
Q Consensus 147 G~M~GRTMYViPfsmGPigSp~s~~GVq-lTDS~YVv~smrIM-tR~g~~v~~~lg~~~~Fv~cvHSvG~Pl~~~~~~~~ 224 (652)
.-.++|.+||.==..|. +|-..+-|. ||+++|..+=++-| -|.-...++.. .-+|. -+|.-+-..++. ..
T Consensus 81 ~yL~~k~lyv~D~~vG~--d~~~~~~vRvit~~a~~aLF~~nL~~~p~~~e~~~f--~pd~t-I~~~p~f~~~p~---~~ 152 (466)
T PF01293_consen 81 DYLSTKELYVQDGYVGA--DPDYRIKVRVITERAWHALFARNLFIRPPPEELQNF--EPDFT-IINAPDFKADPE---ID 152 (466)
T ss_dssp HHHTTSEEEEEEEEESS--STTT-EEEEEEESSHHHHHHHHHHSB-GSHHHHHT---S-SEE-EEEETTS--TTC---HC
T ss_pred HHhcccceEEEEEEEec--CHHHceeEEEEeCcHHHHHHHHHhhcCCChhHhccc--CCCEE-EEeCCccccCCC---cC
Confidence 88899999999888887 555555554 69999998877544 45555544432 12322 122111100000 01
Q ss_pred CCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ceeEeeeeCCCCcEEEEEEEcCCccc
Q psy17657 225 WPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NNRILGVTNPEGKKMFVAAAFPSACG 297 (652)
Q Consensus 225 WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HMlIlgvt~P~G~~~yvaaAFPSaCG 297 (652)
..+++ ++|..+++.+.+.-.|+.|.|.- ||. .|+++..++. |--.=-.+ +|.. ...-.-||+|
T Consensus 153 -g~~s~-~~i~~d~~~~~~vI~Gt~Y~GEi---KK~-ift~~n~ll~~~g~l~mH~san~~~--~gd~--alfFGLSGTG 222 (466)
T PF01293_consen 153 -GTNSD-TFIIFDFERNVAVILGTRYAGEI---KKG-IFTVMNYLLPRNGVLPMHCSANVGK--DGDT--ALFFGLSGTG 222 (466)
T ss_dssp -T-SSS--EEEEETTTTEEEEES---THHH---HHH-HHHHHHHHHHHTT-EEEEEEEEEET--TSSE--EEEEESTTSS
T ss_pred -CCCCC-cEEEEccccCeEEEECCcccccc---hHH-HHHHHHHhhHhcCeEEEEeeeeeCC--CCCe--EEEEecCCCC
Confidence 23344 68999999999999999999996 998 8899888775 54322222 5655 2222589999
Q ss_pred chhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHHHhhccCCceeeeeeec-CCCcc
Q psy17657 298 KTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTT-SDDGV 376 (652)
Q Consensus 298 KTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~am~~l~kntIFTNVa~t-~dG~v 376 (652)
||+|.. .| +.+.+|||.-=+ + |+-+ +|-|-|+|--.-+.+.++.|+...+++..+|.-||.++ ++|.|
T Consensus 223 KTTLs~----d~--~r~ligDDe~~w--~-d~gv--~~~EggcyaKt~~l~~~~ep~i~~ai~~~avlENV~~d~~~~~v 291 (466)
T PF01293_consen 223 KTTLSA----DP--ERELIGDDEHGW--S-DGGV--FNFEGGCYAKTIDLSKESEPEIYNAIKFGAVLENVVVDEETREV 291 (466)
T ss_dssp HHHHHS----BT--TSEEEESSEEEE--E-SSEE--EES-SEEEEE-TT--TTTSHHHHHCCSTT-EEES-EEETTTSCE
T ss_pred cccccc----CC--cceEEeCceeee--c-CCce--EeecCceeeeecCCCcccchhHHHHhccCeeecceEEeCCCCcc
Confidence 999876 22 238999998532 3 5555 47899999999999999999999999989999999997 45444
Q ss_pred cccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceeEEEEecccCC-CCCcceEee
Q psy17657 377 YWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRP-EGVPLVYEA 455 (652)
Q Consensus 377 wWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GVPIsAiiFGGRr~-~tvPLV~ea 455 (652)
-+ .....+ -|.|-+-|.+..|+....- .|=.+++|||=.||+ ..+|+|..-
T Consensus 292 d~----------------~d~s~t---------~N~R~~~p~~~i~n~~~~~---~~~~p~~IifLt~Da~gvlPPvskL 343 (466)
T PF01293_consen 292 DF----------------DDDSIT---------ENTRAIYPREFIPNAVDPG---DGGHPKNIIFLTCDAFGVLPPVSKL 343 (466)
T ss_dssp ET----------------T--SS----------S--EEEEEGGGSSSB-SSS---EES-EEEEEEEE--TTS-S-SEEEE
T ss_pred CC----------------cccccc---------CceeEEEEhhHhhcccccc---ccCCCCEEEEEECCCCCCCCcceeC
Confidence 33 222222 3889999999999877643 233468999999997 679999999
Q ss_pred CCCcchhhhhccchhhhhhcccc--cCcceecCCcccCCCCCCChHHHHHHHHccccCCCCCCCcEEEee
Q psy17657 456 FDWQHGVFVGASMRSEATAAAEH--KGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNVKLPKIFHVN 523 (652)
Q Consensus 456 ~~W~HGVf~gAsm~SE~TAAa~g--~~g~v~~DPmAMlpF~gyn~gdY~~hWL~~g~~~~~k~PkIF~VN 523 (652)
.+=|-.-+..+...+..+++..+ ..+....-||+ -||+-|+...|-+.-.+.-++.+ -+++-||
T Consensus 344 t~~qa~~~F~~G~t~k~agtE~g~~ep~~~fs~~f~-~PF~~~~p~~ya~~l~~~~~~~~---~~~yl~N 409 (466)
T PF01293_consen 344 TPEQAMYYFLSGYTAKVAGTERGVTEPQATFSECFG-NPFMPLPPSVYAELLKEKIKKHG---VNCYLVN 409 (466)
T ss_dssp -HHHHHHHHHH-EEEEETTSBTTSSSEEEEE-GGG--GGG-SS-HHHHHHHHHHHHHHHT----EEEEEE
T ss_pred CHHHHHHHHHHHHHhhhcccccCccCCCCceecccC-CCCccCCHHHHHHHHHHHHHhcC---CCEEEEe
Confidence 77665555444444544444433 34567777888 69999999999888665544422 5667776
No 12
>PLN02597 phosphoenolpyruvate carboxykinase [ATP]
Probab=99.31 E-value=4.8e-09 Score=116.64 Aligned_cols=464 Identities=16% Similarity=0.195 Sum_probs=286.5
Q ss_pred hhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCC-cCCCCCCCccCcc
Q psy17657 50 NLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSD-VVPDHKPGVKSQL 128 (652)
Q Consensus 50 ~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~d-a~p~~~~Gv~~~l 128 (652)
--+++..||+.-..++ |.+++++.++=.-+. .-|...++|.. =..|.-..-||+-+...+ ..=.. ++..
T Consensus 28 ~~~~~~~v~~nl~~~~----Lye~Al~~~eG~l~~-~~GaL~v~TGk-~TGRSP~DKfIV~d~~t~~~iwWg----~g~v 97 (555)
T PLN02597 28 SGLKFTHVLYNLSPAE----LYEQAIKYEKGSFIT-STGALATLSGA-KTGRSPKDKRVVRDETTEDELWWG----KGSP 97 (555)
T ss_pred ccCCcceEEeCCCHHH----HHHHHHHhCCCeEEe-cCCCEEecCCC-cCCCCcccceecCCCCcccceecc----CCcc
Confidence 4478888998875443 666776655432221 12444554442 266777777887333222 11000 0113
Q ss_pred cccCCHhhHHHHHHhcCCCccCCCe-eEEEecccCCCCCCCCcceee-ccCchHHHhhhhhccc-ccHHHHHHhcCCCCe
Q psy17657 129 GNWISPADYDEAIKTRFPGCMKDRT-MYVIPFSMGPVGSPLSKVGVE-ITDSPYVVASMRIMTR-MGKAVLDEIAKNDEF 205 (652)
Q Consensus 129 ~nw~~p~~~~~~l~~~f~G~M~GRT-MYViPfsmGPigSp~s~~GVq-lTDS~YVv~smrIMtR-~g~~v~~~lg~~~~F 205 (652)
|.-++++.+. .|++++..-+++|. +||+==-.|- .|-..+-|. ||..+|-.+-|+-|.. --.+.++..+ .-+|
T Consensus 98 N~p~~~~~f~-~l~~~~~~~l~~~~~lfv~D~~~Ga--d~~~r~~vRvite~aw~alF~~nmfirP~~~el~~f~-~Pdf 173 (555)
T PLN02597 98 NIEMDEETFL-VNRERAVDYLNSLDKVFVNDQFLNW--DPENRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFG-TPDF 173 (555)
T ss_pred CccCCHHHHH-HHHHHHHHHHccCCCEEEEeeeecc--CccceeeEEEEeCHHHHHHHHHhcCCCCChHHhccCC-CCCE
Confidence 5667777765 56666677777765 9999877776 444555554 6888998887777654 3333333332 2345
Q ss_pred eeeeecccCCCCCCCCCCCCC--CCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ceeE-
Q psy17657 206 VRALHSVGTPSSGVHEYPHWP--CDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NNRI- 275 (652)
Q Consensus 206 v~cvHSvG~Pl~~~~~~~~WP--cnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HMlI- 275 (652)
+ -+|.-+.|-+ +|. ++.+ ++|+.+++.+.+.--||.|+|-. ||. .+++..++.. |.--
T Consensus 174 t-Ii~ap~f~a~------~~~~g~~Se-~~i~in~~~~~~lI~GT~YaGE~---KK~-iFs~~~~ll~~rg~l~mHasaN 241 (555)
T PLN02597 174 T-IYNAGQFPCN------RYTHYMTSS-TSIDLNLKRKEMVILGTQYAGEM---KKG-LFSLMHYLMPMRGILSLHSGCN 241 (555)
T ss_pred E-EEeCCCCCCC------ccccCCCCC-cEEEEEccCCeEEEEccchhhhh---HHH-HHHHHHHHHHHCCcEeecCeec
Confidence 4 3343333221 122 4566 58888899999999999999998 999 7888887775 4432
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecce-EEEEeCCCccEEEeCCCCceeeecCCCCCCCCHH
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI-AWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQ 354 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDI-AWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~ 354 (652)
+ +.+|+..=+. .-||.|||+|+.- ||+ ..||||- .| .++| -.|-|-|.+--.-+.+.+..|.
T Consensus 242 v---~~~g~~~lff--GlSGtGKTTLsad----~~~--~li~DDEHgW---~~~G---VfNfEGGCYAK~i~Ls~e~EPe 304 (555)
T PLN02597 242 M---GKDGDVALFF--GLSGTGKTTLSTD----PNR--YLIGDDEHCW---SDNG---VSNIEGGCYAKCIDLSEEKEPD 304 (555)
T ss_pred c---CCCCcEEEEE--ecCCCCccceecC----CCC--ceeecccccc---cCCc---eEeecCceEEEecCCCcccchH
Confidence 2 4456553333 6899999999853 788 7899985 46 5688 4579999999999999999999
Q ss_pred HHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCc
Q psy17657 355 AMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGV 434 (652)
Q Consensus 355 am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GV 434 (652)
++.+++.++|+.||.+++++.+ .|+....-| -|.|-+-|.+..|+.... -.|=
T Consensus 305 I~~Ai~fgavLENVv~d~~~~~---------------~df~D~s~T---------eNtR~aYPi~~I~na~~p---~~~~ 357 (555)
T PLN02597 305 IWNAIKFGTVLENVVFDEHTRE---------------VDYSDKSVT---------ENTRASYPIEYIPNAKIP---CVGP 357 (555)
T ss_pred HHHhcCCCceEEeeEECCCCCc---------------cCCcCCccc---------ccceEEeEHHhccccCCC---ccCC
Confidence 9999999999999999887543 122212222 489999999999998632 1222
Q ss_pred eeEEEEecccCCC-CCcceEeeCCCcchhh---hhccchhhhhhcccccCcceecCC-------cccCCCCCCChHHHHH
Q psy17657 435 PISAIIFGGRRPE-GVPLVYEAFDWQHGVF---VGASMRSEATAAAEHKGKAILNDP-------FAMRPFFGYNFGQYLQ 503 (652)
Q Consensus 435 PIsAiiFGGRr~~-tvPLV~ea~~W~HGVf---~gAsm~SE~TAAa~g~~g~v~~DP-------mAMlpF~gyn~gdY~~ 503 (652)
-.+.|||=.++.- .+|+|..-.. +...| .|=|.. .|..| .|+ ..| |+ .||+.-+-+.|-+
T Consensus 358 hP~~IifLT~DAfGVlPPvskLt~-eQA~yhFlsGyTak---vAGTE--~Gv--~ep~~tFS~CFG-~PFl~l~P~~Ya~ 428 (555)
T PLN02597 358 HPKNVILLACDAFGVLPPVSKLTL-AQTMYHFISGYTAL---VAGTE--DGI--KEPTATFSACFG-AAFIMLHPTKYAA 428 (555)
T ss_pred CCCEEEEEeccccCCCCccccCCH-HHHHHHHHhcceec---ccccc--CCC--CCCcccchhccC-CCCcCCCHHHHHH
Confidence 3578999999875 5577776655 33443 355432 22222 222 123 33 4999999999966
Q ss_pred HHHccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHH-HHH----HHHhhcCCc--cceeeCc-ccc-CcCCCCCC
Q psy17657 504 HWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRV-LDW----IFQRVNGNK--TVRRFSP-IGY-IPDYHHNV 574 (652)
Q Consensus 504 hWL~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RV-L~W----I~~R~~G~~--~~a~eTP-iG~-iP~~~~~~ 574 (652)
--.+.-+ ..--+++-|| .+=.|. .||.-.|+ |+. |-.=++|+- +.-...| .|+ ||+.
T Consensus 429 ~L~eki~---~~~~~vyLvN---TGw~GG----~yg~G~Ri~l~~TRaiv~ail~G~l~~~~~~~~p~Fgl~iP~~---- 494 (555)
T PLN02597 429 MLAEKMQ---KHGATAWLVN---TGWSGG----SYGVGKRMSLAYTRKIIDAIHSGSLLNAEYVKTPIFGLEVPTE---- 494 (555)
T ss_pred HHHHHHH---HcCCCEEEEe---cCccCC----CCCCcceechHHHHHHHHHHhcCCccCCcceECCccCcccccc----
Confidence 5333222 2347888888 553332 13555565 533 222234651 2334444 476 8876
Q ss_pred CccCCCCCCCCCChhhhHHHhhc-cChHHHHHHHHHHHHHHh
Q psy17657 575 INLTDLYEDDKPNLNVNLKELFY-IDKDFWEQELNAIEKYFN 615 (652)
Q Consensus 575 ldl~gL~~~~k~~~~~~~~~l~~-v~~~~W~~E~~~i~~~~~ 615 (652)
+.|++ .+-+..--. -|++.|.++++++.+-|.
T Consensus 495 --~~gVp-------~~iL~Pr~~w~d~~~yd~~a~~La~~F~ 527 (555)
T PLN02597 495 --IEGVP-------SEILDPENTWSDKKAYDETLNKLAGLFK 527 (555)
T ss_pred --CCCCC-------hhhcChhhcCCCHHHHHHHHHHHHHHHH
Confidence 23442 122222222 277788888877765543
No 13
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=99.20 E-value=5.3e-08 Score=108.30 Aligned_cols=466 Identities=18% Similarity=0.262 Sum_probs=280.3
Q ss_pred CeEEEEcCCHHHHHHHHHHHHhc-----CcccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCCCCCcc-Ccc
Q psy17657 55 KDIHICDGTEEENKAILKKMVDT-----NTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVK-SQL 128 (652)
Q Consensus 55 ~~I~icdGS~eE~~~l~~~~~~~-----G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~~Gv~-~~l 128 (652)
..||+.- |. .+|.+++++. ++-. |.. -|..++.|. .=..|.-...||+-+...+. -|- +..
T Consensus 19 ~~v~~Nl-~~---~~L~e~a~~~~~~~~~eg~-~t~-~Gal~v~TG-~~TGRSpkDK~IV~~~~t~~------~i~Wg~v 85 (532)
T TIGR00224 19 HDIVYNP-SY---AQLYEEELKPSLTGYEKGV-LTS-TGAVAVDTG-IFTGRSPKDKYIVEDETTKD------TIWWGPV 85 (532)
T ss_pred ceEEeCC-CH---HHHHHHHHhhccccCCCce-ecc-CCceEEecC-CeeCCCcCceEEeCCCCccc------ccccCcC
Confidence 5676655 33 3467777777 3322 221 355555443 23677777888873222210 010 122
Q ss_pred cccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCccee-eccCchHHHhhhhhcccccHHHHHHhcC-CCCee
Q psy17657 129 GNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGV-EITDSPYVVASMRIMTRMGKAVLDEIAK-NDEFV 206 (652)
Q Consensus 129 ~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GV-qlTDS~YVv~smrIMtR~g~~v~~~lg~-~~~Fv 206 (652)
|.-++++.+.. |++++.--+++|.|||+==-+|- .|-..+-| =||.-+|-.+-|+-|...-.. +.+.. ..+|.
T Consensus 86 N~p~~~~~f~~-L~~~v~~~l~~~~lyv~D~~~Ga--Dp~~rl~vRvite~AwhalF~~nmfirP~~--eel~~fePdft 160 (532)
T TIGR00224 86 NKPLSEETWQH-LKGLVTRQLSRKRLFVVDAFCGA--DPKYRLSVRVVTEVAWQAHFVKNMFIRPTE--EELAGFEPDFT 160 (532)
T ss_pred CcCCCHHHHHH-HHHHHHHHhcCCCEEEEeeeecc--CcccceeEEEEEcHHHHHHHHHhhCCCCCh--HHhccCCCCEE
Confidence 35577776644 33444444568999999888886 33333333 367888888777776543221 33321 22332
Q ss_pred eeeecccCCCCCCCCCCCCC---CCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ceeE-
Q psy17657 207 RALHSVGTPSSGVHEYPHWP---CDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NNRI- 275 (652)
Q Consensus 207 ~cvHSvG~Pl~~~~~~~~WP---cnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HMlI- 275 (652)
= +|.-+. .+..|. ++++ ++|+.+++.+.+.-.|+.|+|.. ||. -|.+..++.. |.--
T Consensus 161 I-~~~p~f------~~ad~~~~g~~S~-~~i~in~~~~~~lI~GT~YaGEi---KKg-iFs~~~~ll~~rg~l~lH~san 228 (532)
T TIGR00224 161 V-MNGAKF------TNPNWKEQGLNSE-NFVAFNLTERMQLIGGTWYGGEM---KKG-MFSMMNYLLPLKGILSMHCSAN 228 (532)
T ss_pred E-EeCCCC------CCCCcccCCCCcC-cEEEEecccCeEEEECcchhhhh---HHH-HHHHHHHHHHhCCeEeecCeee
Confidence 1 222221 111122 3455 68999999999999999999998 999 7777777765 5433
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHH
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQA 355 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~a 355 (652)
+ +.+|+. ++-..-||.|||+|+.- | .. ..||||=- .+ .+|| + .|-|-|.+--.-+.+.+..|.+
T Consensus 229 v---~~~g~~--~~ffGlSGtGKTTLsad-~--~r---~li~DDEh-gW-~~~G-v--fn~EGGCYaK~i~Ls~e~EPeI 292 (532)
T TIGR00224 229 V---GEKGDV--ALFFGLSGTGKTTLSTD-P--KR---RLIGDDEH-GW-DDDG-V--FNFEGGCYAKTIHLSEEKEPEI 292 (532)
T ss_pred e---CCCCCE--EEEEecCCCChhhhhcc-c--cc---cccccccc-cc-cCCc-e--EeecCceEEEecCCCcccchHH
Confidence 2 344654 33336899999999863 2 12 88999864 32 5689 3 3899999999999999999999
Q ss_pred HhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCce
Q psy17657 356 MQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVP 435 (652)
Q Consensus 356 m~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GVP 435 (652)
+++++.++|+.||.+++++.|-. ....-| -|.|-+-|.+..|+.... .-.|=-
T Consensus 293 ~~Ai~fgavLENVv~d~~~~vdf----------------~d~s~T---------eNtR~ayPi~~I~n~~~~--~~~~~~ 345 (532)
T TIGR00224 293 YNAIRRDALLENVVVREDGTVDF----------------DDGSKT---------ENTRVSYPIYHIDNIVKP--VSAAGH 345 (532)
T ss_pred HHhcCCCceEEeeeECCCCCccC----------------CCCccc---------ccceEEeEHHhccccCCC--CccCCC
Confidence 99999999999999988755432 111222 489999999999998532 112224
Q ss_pred eEEEEecccCCCCC-cceEeeCCCcchhh---hhccchhhhhhcccccCcceecCCccc------CCCCCCChHHHHHHH
Q psy17657 436 ISAIIFGGRRPEGV-PLVYEAFDWQHGVF---VGASMRSEATAAAEHKGKAILNDPFAM------RPFFGYNFGQYLQHW 505 (652)
Q Consensus 436 IsAiiFGGRr~~tv-PLV~ea~~W~HGVf---~gAsm~SE~TAAa~g~~g~v~~DPmAM------lpF~gyn~gdY~~hW 505 (652)
.+.|||=.++.-+| |+|..-.. +...| .|=|..+ |..| .| + ..|=|- -||+..+-..|-+--
T Consensus 346 p~~iifLT~DAfGVlPPvskLt~-eQA~yhFlsGyTakv---AGTE--~G-v-~ep~~tFS~Cfg~PFl~~~p~~Ya~lL 417 (532)
T TIGR00224 346 ATKVIFLTADAFGVLPPVSKLTP-EQTMYHFLSGFTAKL---AGTE--RG-I-TEPTPTFSACFGAAFLSLHPTQYAEVL 417 (532)
T ss_pred CCEEEEEeccccCCCCccccCCH-HHHHHHHHhcceecc---cccc--CC-C-CCCcccchhhcCCCCCCCCHHHHHHHH
Confidence 57899999987655 77766554 33444 3544322 2222 22 2 345554 899999999996653
Q ss_pred HccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHH-HHHH----HHhhcCC--ccceeeCc-ccc-CcCCCCCCCc
Q psy17657 506 LDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRV-LDWI----FQRVNGN--KTVRRFSP-IGY-IPDYHHNVIN 576 (652)
Q Consensus 506 L~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RV-L~WI----~~R~~G~--~~~a~eTP-iG~-iP~~~~~~ld 576 (652)
-+ +..+.--+++-|| .| |-|-| .|+ |+.- -.=++|+ .+.-...| .|+ ||++
T Consensus 418 ~~---ki~~~~~~v~LvN------TG---w~G~G--~Ri~l~~TRaiv~ail~G~l~~~~~~~~~~fgl~iP~~------ 477 (532)
T TIGR00224 418 VK---RMQAAGAQAYLVN------TG---WNGTG--KRISIKDTRAIIDAILDGSLENAEMFTLPIFNLAIPTE------ 477 (532)
T ss_pred HH---HHHHcCCCEEEEe------cC---cccCC--cEecHHHHHHHHHHHhcCCccCCCceECCccCcccccc------
Confidence 22 2222347788888 33 44555 454 4442 2223454 12233344 477 8886
Q ss_pred cCCCCCCCCCChhhhHHHh-hccChHHHHHHHHHHHHHHhh---hhCCC-CCHHHHH
Q psy17657 577 LTDLYEDDKPNLNVNLKEL-FYIDKDFWEQELNAIEKYFND---QVGSD-LPPAIHA 628 (652)
Q Consensus 577 l~gL~~~~k~~~~~~~~~l-~~v~~~~W~~E~~~i~~~~~~---~~g~~-lP~~i~~ 628 (652)
+.|++ .+-+..- .=-|++.|.+.++.+.+-|.+ ||... .++++.+
T Consensus 478 ~pgvp-------~~iL~Pr~~W~d~~~y~~~a~~La~~F~~Nf~~f~~~~~~~~v~~ 527 (532)
T TIGR00224 478 LPGVD-------TKILDPRNTYASKEQWQEKAETLANLFVDNFKKYADTPAGAALVA 527 (532)
T ss_pred CCCCC-------hhhcCHhhccCCHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHh
Confidence 34553 1222222 223778888888888766653 45433 5666543
No 14
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=98.33 E-value=0.00079 Score=74.70 Aligned_cols=449 Identities=18% Similarity=0.230 Sum_probs=273.9
Q ss_pred HHHHHHHHhcCccccc-----ccccCeEEeccCCCCccccccceEEEecCC-CCcCCCCCCCccCcccccCCHhhHHHHH
Q psy17657 68 KAILKKMVDTNTVKRV-----RKHVNCWLASTNPADVARVEDKTFICTVNR-SDVVPDHKPGVKSQLGNWISPADYDEAI 141 (652)
Q Consensus 68 ~~l~~~~~~~G~~~~L-----~k~~n~~l~rsdP~DvARve~rTfI~t~~~-~da~p~~~~Gv~~~l~nw~~p~~~~~~l 141 (652)
+.|-.+.++.|+-..- ..+.|.| .+|.-..-||+.++. +|..+. +.-+.-++++.+. .|
T Consensus 28 ~~L~e~~i~~~eg~lt~~Gal~~~TG~~--------TGRSPkDkfiV~~~~t~~~i~W------~~~Nkpi~~e~f~-~L 92 (529)
T COG1866 28 AQLYEEAIRRGEGVLTATGALRVDTGIY--------TGRSPKDKFIVRDDSTRDTIWW------GTRNKPISPETFD-RL 92 (529)
T ss_pred HHHHHHHhhcCCCccCCCCceEEecccc--------cCCCCCCceEEecCcccccccc------cccCccCCHHHHH-HH
Confidence 4566777777733222 1234444 445555556653332 333332 1234667766665 45
Q ss_pred HhcCCCccCCCeeEEEecccCCCCCCCCcceee-ccCchHHHhhhhhcc-cccHHHHHHhcCCCCeeeeeecccCCCCCC
Q psy17657 142 KTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVE-ITDSPYVVASMRIMT-RMGKAVLDEIAKNDEFVRALHSVGTPSSGV 219 (652)
Q Consensus 142 ~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVq-lTDS~YVv~smrIMt-R~g~~v~~~lg~~~~Fv~cvHSvG~Pl~~~ 219 (652)
..++---.+||.+||+=-+-|-= +-..+-|. ||-++|=.|=||=|. |-..+.+.. + .-+|+-- ++.. ....
T Consensus 93 ~~~~~~yl~~k~lfv~d~~~Ga~--~~~~l~vrvvte~Awh~lF~~nlfIrP~~e~l~~-~-~~dftvi--n~p~-f~~~ 165 (529)
T COG1866 93 KGDVTDYLSGKDLFVVDGFAGAD--PDYRLPVRVVTEVAWHALFIRNLFIRPTGEELST-F-KPDFTVI--NAPS-FKAD 165 (529)
T ss_pred HHHHHHHhccCcEEEEEeeecCC--ccceeeeEeehhhHHHHHHHHhcccccchhhhcc-C-CCCeEEE--eCCc-CCCC
Confidence 55666778899999998776642 22333333 578888777666553 555533222 1 3345421 1111 0000
Q ss_pred -CCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc--------ceeEeeeeCCCCcEEEEEE
Q psy17657 220 -HEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP--------NNRILGVTNPEGKKMFVAA 290 (652)
Q Consensus 220 -~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar--------HMlIlgvt~P~G~~~yvaa 290 (652)
..+ =+|.+ .+|+.+-+++.+.-=|+-|+|-- ||. +=|+|.. -|--....+++|...-|-
T Consensus 166 ~~~~---g~~Se-~~i~~n~~~~~~lIggT~YaGEM---KK~----~fs~mnylLP~~~i~~MHcsANvG~~gdvalFF- 233 (529)
T COG1866 166 PKRD---GLRSE-TFVAFNFTERIVLIGGTWYAGEM---KKG----IFSVMNYLLPLKGILSMHCSANVGEKGDVALFF- 233 (529)
T ss_pred hhhc---ccccc-cEEEEecccceeeeeccchhhhh---hhh----HHHHhhccccccccccceeccccCcCCCeEEEE-
Confidence 000 02344 57888888999999999999976 776 2233443 454555667778776555
Q ss_pred EcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHHHhhccCCceeeeeee
Q psy17657 291 AFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGT 370 (652)
Q Consensus 291 AFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~am~~l~kntIFTNVa~ 370 (652)
.-||.|||+|.- .|. =+.||||+- . ++++|.. |-|-|-+--+--.|.+.-|.+..+++..++..||-+
T Consensus 234 -GLSGTGKTTLSa----Dp~--R~LIGDDEH-g-W~d~GVF---N~EGGCYAK~I~Ls~e~EP~I~~Ai~~~avLENVVv 301 (529)
T COG1866 234 -GLSGTGKTTLSA----DPH--RRLIGDDEH-G-WDDRGVF---NFEGGCYAKTINLSEEKEPEIYAAIKRGAVLENVVV 301 (529)
T ss_pred -eccCCCcceecc----CCc--cccccCccc-c-cCCCceE---eecCccccccccCchhhchhHHHHhhccceeeeEEE
Confidence 479999999843 233 389999996 2 2677864 578888878888999999999999999999999999
Q ss_pred cCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCceeEEEEecccCCCC-C
Q psy17657 371 TSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRPEG-V 449 (652)
Q Consensus 371 t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GVPIsAiiFGGRr~~t-v 449 (652)
.+||.|=. ....- -.|+|...|....||..|.-.. ---..|||=.+|+-+ +
T Consensus 302 dedg~~Df----------------~D~Sl---------TeNTR~aYpi~~Ipn~~~~~~~---ghp~~iIfLTaDafGVl 353 (529)
T COG1866 302 DEDGTPDF----------------DDGSL---------TENTRAAYPIEHIPNVSPSVKA---GHPKNVIFLTADAFGVL 353 (529)
T ss_pred cCCCCcCC----------------ccccc---------cccccccchHhhccccCccccc---CCCceEEEEeccccCCC
Confidence 99976522 11112 2599999999999997775332 224589999999765 5
Q ss_pred cceEeeCCCcchhh---hhccchhhhhhcccccCcc--eecCCcccCCCCCCChHHHHHHHHccccCCCCCCCcEEEeee
Q psy17657 450 PLVYEAFDWQHGVF---VGASMRSEATAAAEHKGKA--ILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNVKLPKIFHVNW 524 (652)
Q Consensus 450 PLV~ea~~W~HGVf---~gAsm~SE~TAAa~g~~g~--v~~DPmAMlpF~gyn~gdY~~hWL~~g~~~~~k~PkIF~VNw 524 (652)
|+|..-.. +.-+| .|=| -.+|.+|-.+.+ --+.+=-=.||+.-+-+.|-.-=++.-++.+ =+.|-||
T Consensus 354 PPvsrLTp-eQamYhFlsG~T---aK~agTE~Gvtep~pTFStCFGaPFmp~hp~~YA~~L~~~i~~~~---~~vyLvN- 425 (529)
T COG1866 354 PPVSRLTP-EQAMYHFLSGYT---AKLAGTERGVTEPEPTFSTCFGAPFMPLHPTRYAELLGKLIKAHG---ANVYLVN- 425 (529)
T ss_pred CcchhcCH-HHHHHHHHcchh---hhccccccCCCCCCcccccccCCcccCCChhHHHHHHHHHHHHcC---CcEEEEe-
Confidence 88887663 33444 2333 344444433332 2223333368999999999877655544433 4566666
Q ss_pred eecCCCCCcccCC--CCchhHH-HHH----HHHhhcCC--ccc-eeeCcccc-CcCCCCCCCccCCCCCCCCCChhhhHH
Q psy17657 525 FRKDKDGKFMWPG--FGDNIRV-LDW----IFQRVNGN--KTV-RRFSPIGY-IPDYHHNVINLTDLYEDDKPNLNVNLK 593 (652)
Q Consensus 525 Frkd~~GkfLWPG--fgeN~RV-L~W----I~~R~~G~--~~~-a~eTPiG~-iP~~~~~~ldl~gL~~~~k~~~~~~~~ 593 (652)
.+ |-| ||.-.|+ |+. |-.-++|. .++ -...-+|+ ||..- ..+|...|+ +...|
T Consensus 426 --TG------WtGg~yg~GkRi~ik~TRall~a~l~G~l~nae~~~d~~f~l~iP~~~-pGV~~~iln------P~~tw- 489 (529)
T COG1866 426 --TG------WTGGAYGTGKRIPIKYTRALLDAILDGSLENAETKTDPIFGLAIPVAL-PGVDSDILN------PRNTW- 489 (529)
T ss_pred --cC------ccCCCCCCccccCHHHHHHHHHHHhccccccceeeecccccccccccC-CCCCccccC------hhhhh-
Confidence 33 444 3444554 332 22224454 122 23455687 88864 447777776 23444
Q ss_pred HhhccChHHHHHHHHHHHHHHhhhh
Q psy17657 594 ELFYIDKDFWEQELNAIEKYFNDQV 618 (652)
Q Consensus 594 ~l~~v~~~~W~~E~~~i~~~~~~~~ 618 (652)
-|+..|.+.++++.+-|.+-|
T Consensus 490 ----~dk~~y~~~a~~La~~F~~NF 510 (529)
T COG1866 490 ----ADKAAYDEKARRLAKLFIENF 510 (529)
T ss_pred ----ccHHHHHHHHHHHHHHHHHhh
Confidence 689999999999987775433
No 15
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=89.29 E-value=0.16 Score=49.04 Aligned_cols=33 Identities=30% Similarity=0.239 Sum_probs=25.9
Q ss_pred EEEEcCCcccchhhcccC-CCCCCceEEEeecce
Q psy17657 288 VAAAFPSACGKTNLAMLM-PTLYDWKVECVGDDI 320 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~-p~~pGwkve~VGDDI 320 (652)
|+-+.|||||||+||-.. ..+.+.++.+++.|-
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 455689999999998644 445788999999885
No 16
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=89.01 E-value=0.37 Score=46.74 Aligned_cols=43 Identities=33% Similarity=0.373 Sum_probs=33.4
Q ss_pred cCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCC
Q psy17657 292 FPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPES 338 (652)
Q Consensus 292 FPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~ 338 (652)
.|||+|||.||.-.= ..|+ ..|+||...++.. +|+|.|-.|+.
T Consensus 21 G~sG~GKStlal~L~-~~g~--~lvaDD~v~v~~~-~~~l~~~~p~~ 63 (149)
T cd01918 21 GPSGIGKSELALELI-KRGH--RLVADDRVVVKRE-GGRLVGRAPEA 63 (149)
T ss_pred cCCCCCHHHHHHHHH-HcCC--eEEECCEEEEEEE-CCEEEEeChHH
Confidence 799999999985210 1365 7999999999864 69999988875
No 17
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=85.98 E-value=0.42 Score=49.18 Aligned_cols=38 Identities=32% Similarity=0.186 Sum_probs=30.6
Q ss_pred CcEEEEEEEcCCcccchhhcc-cCCCCCCceEEEeecce
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM-LMPTLYDWKVECVGDDI 320 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM-l~p~~pGwkve~VGDDI 320 (652)
-+..-|+-|.+||||||++|= |.-.+++++|..|.-|=
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~ 44 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDD 44 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccc
Confidence 456788899999999999984 55668888888888663
No 18
>PTZ00301 uridine kinase; Provisional
Probab=85.15 E-value=0.5 Score=47.66 Aligned_cols=18 Identities=22% Similarity=0.335 Sum_probs=14.5
Q ss_pred EEEEEEcCCcccchhhcc
Q psy17657 286 MFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAM 303 (652)
+-|+-|.|||||||+||.
T Consensus 4 ~iIgIaG~SgSGKTTla~ 21 (210)
T PTZ00301 4 TVIGISGASGSGKSSLST 21 (210)
T ss_pred EEEEEECCCcCCHHHHHH
Confidence 346667889999999994
No 19
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=82.26 E-value=0.68 Score=50.65 Aligned_cols=40 Identities=33% Similarity=0.503 Sum_probs=28.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcccCCC----CCCceEEEeecceEEE
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLMPT----LYDWKVECVGDDIAWM 323 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~p~----~pGwkve~VGDDIAWm 323 (652)
++|+ |+|==.|||||||+|-+|..- -.| +|..-|-||.=+
T Consensus 29 ~~Ge--f~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~l 72 (352)
T COG3842 29 KKGE--FVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDV 72 (352)
T ss_pred cCCc--EEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCC
Confidence 4564 566668999999999876532 344 778878777643
No 20
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=80.21 E-value=0.83 Score=44.43 Aligned_cols=16 Identities=50% Similarity=0.588 Sum_probs=12.4
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
|+-|.|||||||+||=
T Consensus 2 IgI~G~sgSGKTTla~ 17 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAK 17 (194)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556789999998874
No 21
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=79.92 E-value=1.6 Score=43.50 Aligned_cols=58 Identities=24% Similarity=0.257 Sum_probs=39.3
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCC
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPE 337 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE 337 (652)
|-..+-|- |.- |.-..|||.|||.||.-.= .-|+ +.|+||...++...++.|.+-.|+
T Consensus 10 Hg~~v~i~---G~G--VLi~G~SG~GKS~lAl~Li-~rGh--~lvaDD~v~i~~~~~~~l~g~~p~ 67 (171)
T PF07475_consen 10 HGSLVDIG---GVG--VLITGPSGIGKSELALELI-KRGH--RLVADDRVEIRRIGGRTLIGRAPE 67 (171)
T ss_dssp ESEEEEET---TEE--EEEEESTTSSHHHHHHHHH-HTT---EEEESSEEEEEECTTCEEEEEE-G
T ss_pred eEEEEEEC---CEE--EEEECCCCCCHHHHHHHHH-HCCC--eEEeCCEEEEEECCCCEEEEeCCh
Confidence 55544443 333 3334799999999986210 1577 999999999998766669988887
No 22
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=77.68 E-value=1.2 Score=43.21 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=19.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+| |+|||||.||+-
T Consensus 10 ~~g~i~~i~G--~~GsGKT~l~~~ 31 (209)
T TIGR02237 10 ERGTITQIYG--PPGSGKTNICMI 31 (209)
T ss_pred CCCeEEEEEC--CCCCCHHHHHHH
Confidence 6788888884 999999999984
No 23
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=76.08 E-value=1.4 Score=45.68 Aligned_cols=17 Identities=47% Similarity=0.675 Sum_probs=13.5
Q ss_pred EEEEEcCCcccchhhcc
Q psy17657 287 FVAAAFPSACGKTNLAM 303 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAM 303 (652)
+++.-.|||||||+|-=
T Consensus 33 ~vv~lGpSGcGKTTLLn 49 (259)
T COG4525 33 LVVVLGPSGCGKTTLLN 49 (259)
T ss_pred EEEEEcCCCccHHHHHH
Confidence 46666899999999843
No 24
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=75.89 E-value=1.5 Score=43.04 Aligned_cols=22 Identities=32% Similarity=0.404 Sum_probs=16.2
Q ss_pred CCCCcEEEEEEEcCCcccchhhcc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+|+. |+-+.|||||||+||=
T Consensus 3 ~~~g~v--i~I~G~sGsGKSTl~~ 24 (207)
T TIGR00235 3 KPKGII--IGIGGGSGSGKTTVAR 24 (207)
T ss_pred CCCeEE--EEEECCCCCCHHHHHH
Confidence 455654 5555899999999973
No 25
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.74 E-value=1.4 Score=38.73 Aligned_cols=31 Identities=26% Similarity=0.315 Sum_probs=19.4
Q ss_pred EEEcCCcccchhhcccCCCCCCceEEEeecce
Q psy17657 289 AAAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320 (652)
Q Consensus 289 aaAFPSaCGKTnlAMl~p~~pGwkve~VGDDI 320 (652)
.-+.|||||||++|-..--.-|+++- -.||+
T Consensus 3 ~I~G~~gsGKST~a~~La~~~~~~~i-~~d~~ 33 (121)
T PF13207_consen 3 IISGPPGSGKSTLAKELAERLGFPVI-SMDDL 33 (121)
T ss_dssp EEEESTTSSHHHHHHHHHHHHTCEEE-EEHHH
T ss_pred EEECCCCCCHHHHHHHHHHHHCCeEE-Eecce
Confidence 34579999999998643322266543 44444
No 26
>TIGR00679 hpr-ser Hpr(Ser) kinase/phosphatase. The hprK gene of Enterococcus faecalis encodes a bifunctional enzyme: the HPr kinase/phosphatase
Probab=75.59 E-value=2.6 Score=45.53 Aligned_cols=91 Identities=15% Similarity=0.124 Sum_probs=56.6
Q ss_pred CCCeEEEecCCCccccccc--cchhhhhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhcc-cCCCCCCceEEE
Q psy17657 239 DTMEIASYGSGYGGNSLLG--KKCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAM-LMPTLYDWKVEC 315 (652)
Q Consensus 239 ~~r~I~S~GSgYGGNaLLG--KKcfALRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAM-l~p~~pGwkve~ 315 (652)
++..|-.+-|-+.+..+.. ...+.-++|-....|--.+-|- |+-.-+ ..+||.||+.||. |.- -|+ ..
T Consensus 103 ~~~~ip~l~t~~~~~~~~~~l~~~L~~~la~~~~~hg~~v~i~---g~gvli--~G~sg~GKS~lal~Li~--rg~--~l 173 (304)
T TIGR00679 103 ETYQVPILKTDLFSTELSFRLETYLNEQFAPTAAIHGVLVEVY---GVGVLI--TGKSGVGKSETALELIN--RGH--RL 173 (304)
T ss_pred HHhCCcEEEeCCcHHHHHHHHHHHHHHhhccceeeeeEEEEEC---CEEEEE--EcCCCCCHHHHHHHHHH--cCC--ce
Confidence 3444444445555544322 2233344454444577655443 333334 4899999999876 222 366 69
Q ss_pred eecceEEEEeCCCccEEEeCCCC
Q psy17657 316 VGDDIAWMKFDEEGNLRAINPES 338 (652)
Q Consensus 316 VGDDIAWmr~~~dGrl~AINPE~ 338 (652)
|+||...++-..+|+|.+--||.
T Consensus 174 vaDD~~~~~~~~~~~L~g~~p~~ 196 (304)
T TIGR00679 174 VADDAVEIYRLNGNRLFGRAQEL 196 (304)
T ss_pred eecCeEEEEEecCCEEEEeCChh
Confidence 99999999977789999887873
No 27
>KOG3220|consensus
Probab=75.18 E-value=0.99 Score=46.58 Aligned_cols=44 Identities=32% Similarity=0.612 Sum_probs=34.5
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhc-------------------ccCCCCCCce--EEEeecceEEEEeCCCccE
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLA-------------------MLMPTLYDWK--VECVGDDIAWMKFDEEGNL 331 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlA-------------------Ml~p~~pGwk--ve~VGDDIAWmr~~~dGrl 331 (652)
|+|+|+|+ | +|||||+.+ |+.|--|.|+ |+.-||+| + .+||.+
T Consensus 1 M~iVGLTG--g----------iatGKStVs~~f~~~G~~vIDaD~vaR~vv~PG~p~~~~ive~FG~ei--L--l~~G~i 64 (225)
T KOG3220|consen 1 MLIVGLTG--G----------IATGKSTVSQVFKALGIPVIDADVVAREVVEPGTPAYRRIVEAFGTEI--L--LEDGEI 64 (225)
T ss_pred CeEEEeec--c----------cccChHHHHHHHHHcCCcEecHHHHHHHHhcCCChHHHHHHHHhCcee--e--ccCCcc
Confidence 89999997 3 789999875 4567778887 88889999 3 567865
Q ss_pred E
Q psy17657 332 R 332 (652)
Q Consensus 332 ~ 332 (652)
.
T Consensus 65 n 65 (225)
T KOG3220|consen 65 N 65 (225)
T ss_pred c
Confidence 4
No 28
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=74.82 E-value=1 Score=47.84 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=15.9
Q ss_pred cEEEEEEEcCCcccchhhc
Q psy17657 284 KKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlA 302 (652)
+..-|+-|.|||||||+||
T Consensus 61 ~p~IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTA 79 (290)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 3456778899999999998
No 29
>PRK06696 uridine kinase; Validated
Probab=74.62 E-value=1.8 Score=43.15 Aligned_cols=38 Identities=26% Similarity=0.205 Sum_probs=26.2
Q ss_pred CcEEEEEEEcCCcccchhhcccC-CCCC--CceEEEee-cce
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLM-PTLY--DWKVECVG-DDI 320 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~-p~~p--Gwkve~VG-DDI 320 (652)
++..-|+-+.|||||||+||-.. -.++ |.+|-.++ ||.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf 61 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF 61 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence 45677888889999999998643 2343 65665555 554
No 30
>PRK05480 uridine/cytidine kinase; Provisional
Probab=74.26 E-value=1.9 Score=42.20 Aligned_cols=36 Identities=28% Similarity=0.318 Sum_probs=22.8
Q ss_pred cEEEEEEEcCCcccchhhcccC-CCCCCceEEEeecc
Q psy17657 284 KKMFVAAAFPSACGKTNLAMLM-PTLYDWKVECVGDD 319 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl~-p~~pGwkve~VGDD 319 (652)
+..-|+-+.|||||||+||-.. .-+++..+..++-|
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 3455666689999999998543 23444445545444
No 31
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=73.93 E-value=1.8 Score=45.55 Aligned_cols=20 Identities=50% Similarity=0.841 Sum_probs=15.5
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
++|+ ||+--.|||||||+|-
T Consensus 27 ~~GE--fvsilGpSGcGKSTLL 46 (248)
T COG1116 27 EKGE--FVAILGPSGCGKSTLL 46 (248)
T ss_pred CCCC--EEEEECCCCCCHHHHH
Confidence 4565 6666799999999984
No 32
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=73.70 E-value=2.1 Score=41.42 Aligned_cols=25 Identities=20% Similarity=0.139 Sum_probs=16.9
Q ss_pred EEEEcCCcccchhhcccCCCCCCce
Q psy17657 288 VAAAFPSACGKTNLAMLMPTLYDWK 312 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~p~~pGwk 312 (652)
++-..|||||||+|+-+.-...++.
T Consensus 5 i~l~G~sGsGKsTl~~~l~~~~~~~ 29 (186)
T PRK10078 5 IWLMGPSGSGKDSLLAALRQREQTQ 29 (186)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCe
Confidence 3345799999999987654343443
No 33
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=72.76 E-value=1.6 Score=45.47 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=12.9
Q ss_pred cCCcccchhhcccCC
Q psy17657 292 FPSACGKTNLAMLMP 306 (652)
Q Consensus 292 FPSaCGKTnlAMl~p 306 (652)
.|+|||||+||.+..
T Consensus 57 GPPG~GKTTLA~IIA 71 (233)
T PF05496_consen 57 GPPGLGKTTLARIIA 71 (233)
T ss_dssp SSTTSSHHHHHHHHH
T ss_pred CCCccchhHHHHHHH
Confidence 388999999999854
No 34
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=71.51 E-value=2.2 Score=41.87 Aligned_cols=22 Identities=36% Similarity=0.510 Sum_probs=18.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+| |+|||||.||+.
T Consensus 17 ~~g~i~~i~G--~~GsGKT~l~~~ 38 (218)
T cd01394 17 ERGTVTQVYG--PPGTGKTNIAIQ 38 (218)
T ss_pred cCCeEEEEEC--CCCCCHHHHHHH
Confidence 5688888884 999999999885
No 35
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=71.41 E-value=3.4 Score=42.20 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=18.8
Q ss_pred CCcEEEEEEEcCCcccchhh----cccCCCCCC
Q psy17657 282 EGKKMFVAAAFPSACGKTNL----AMLMPTLYD 310 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnl----AMl~p~~pG 310 (652)
.|+.+-++ .||||||+.| |-|.|+..|
T Consensus 28 ~Ge~iait--GPSG~GKStllk~va~Lisp~~G 58 (223)
T COG4619 28 AGEFIAIT--GPSGCGKSTLLKIVASLISPTSG 58 (223)
T ss_pred CCceEEEe--CCCCccHHHHHHHHHhccCCCCc
Confidence 47665555 8999999987 445555555
No 36
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.17 E-value=2.6 Score=35.64 Aligned_cols=14 Identities=43% Similarity=0.472 Sum_probs=12.1
Q ss_pred EcCCcccchhhccc
Q psy17657 291 AFPSACGKTNLAML 304 (652)
Q Consensus 291 AFPSaCGKTnlAMl 304 (652)
..|+|||||.+|+.
T Consensus 8 ~G~~G~GKTtl~~~ 21 (148)
T smart00382 8 VGPPGSGKTTLARA 21 (148)
T ss_pred ECCCCCcHHHHHHH
Confidence 37999999999874
No 37
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=70.53 E-value=2.6 Score=44.14 Aligned_cols=32 Identities=28% Similarity=0.380 Sum_probs=21.2
Q ss_pred CCCCcEEEEEEEcCCcccchhhcc----cCCCCCCceE
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAM----LMPTLYDWKV 313 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAM----l~p~~pGwkv 313 (652)
=|+++.+=+- .|||||||+|-= |...+||-+|
T Consensus 30 i~~~~VTAlI--GPSGcGKST~LR~lNRmndl~~~~r~ 65 (253)
T COG1117 30 IPKNKVTALI--GPSGCGKSTLLRCLNRMNDLIPGARV 65 (253)
T ss_pred ccCCceEEEE--CCCCcCHHHHHHHHHhhcccCcCceE
Confidence 3667666444 799999998742 3455677544
No 38
>PRK06547 hypothetical protein; Provisional
Probab=70.06 E-value=2.7 Score=41.12 Aligned_cols=22 Identities=36% Similarity=0.255 Sum_probs=16.1
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++...|+-+.|||||||+||=.
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~ 34 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGA 34 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3455666667899999999753
No 39
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=69.72 E-value=2.6 Score=41.30 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=18.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+=|+ .|||||||.||+.
T Consensus 17 ~~g~v~~I~--G~~GsGKT~l~~~ 38 (226)
T cd01393 17 PTGRITEIF--GEFGSGKTQLCLQ 38 (226)
T ss_pred cCCcEEEEe--CCCCCChhHHHHH
Confidence 458888777 5999999999984
No 40
>PRK14738 gmk guanylate kinase; Provisional
Probab=69.26 E-value=2.9 Score=41.43 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=16.6
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+.+|. +...|+-..|||||||+|+
T Consensus 7 ~~~~~-~~~~ivi~GpsG~GK~tl~ 30 (206)
T PRK14738 7 FNKPA-KPLLVVISGPSGVGKDAVL 30 (206)
T ss_pred cCCCC-CCeEEEEECcCCCCHHHHH
Confidence 34554 3445555699999999985
No 41
>PRK00300 gmk guanylate kinase; Provisional
Probab=69.24 E-value=3.1 Score=40.25 Aligned_cols=21 Identities=29% Similarity=0.433 Sum_probs=16.0
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+||-+
T Consensus 4 ~g~~i~i~--G~sGsGKstl~~~ 24 (205)
T PRK00300 4 RGLLIVLS--GPSGAGKSTLVKA 24 (205)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 46665555 6999999999764
No 42
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=68.21 E-value=1.8 Score=43.33 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=17.5
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.++..-++-+.|||||||+|+=
T Consensus 30 ~~~~~iigi~G~~GsGKTTl~~ 51 (229)
T PRK09270 30 PQRRTIVGIAGPPGAGKSTLAE 51 (229)
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 3566777778999999999764
No 43
>PRK05428 HPr kinase/phosphorylase; Provisional
Probab=67.80 E-value=6.5 Score=42.56 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=57.7
Q ss_pred CCCCeEEEecCCCccccccc--cchhhhhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhcc-cCCCCCCceEE
Q psy17657 238 PDTMEIASYGSGYGGNSLLG--KKCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAM-LMPTLYDWKVE 314 (652)
Q Consensus 238 p~~r~I~S~GSgYGGNaLLG--KKcfALRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAM-l~p~~pGwkve 314 (652)
-++..|--|-|.+.-..++. ...+.-++|-....|--.+-|-+ .=.-|+ .+||.|||.||. |.- -|+ .
T Consensus 102 a~~~~ipll~t~~~t~~~i~~l~~~L~~~la~~~~iHg~~v~V~G---~GvLi~--G~SG~GKSelALeLi~--rGh--~ 172 (308)
T PRK05428 102 AKEAGIPLLRTPLSTTRLISKLTNYLDRKLAPRTSVHGVLVDIYG---IGVLIT--GESGIGKSETALELIK--RGH--R 172 (308)
T ss_pred HHHcCCcEEEeCCcHHHHHHHHHHHHHHHhhhcceeeeEEEEECC---EEEEEE--cCCCCCHHHHHHHHHH--cCC--c
Confidence 33444444555555544443 23444455666566876665543 334444 799999998887 222 365 6
Q ss_pred EeecceEEEEeCCCccEEEeCCCC
Q psy17657 315 CVGDDIAWMKFDEEGNLRAINPES 338 (652)
Q Consensus 315 ~VGDDIAWmr~~~dGrl~AINPE~ 338 (652)
.|+||...++-..+..|.+-.||.
T Consensus 173 LVaDD~v~i~~~~~~~L~g~~p~~ 196 (308)
T PRK05428 173 LVADDAVDIKRIGPDTLEGRCPEL 196 (308)
T ss_pred eEecCeEEEEEecCCEEEeeCchh
Confidence 999999999965445598887775
No 44
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=67.65 E-value=2.8 Score=45.48 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=19.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+| |+|||||+||+.
T Consensus 53 p~G~iteI~G--p~GsGKTtLal~ 74 (325)
T cd00983 53 PKGRIIEIYG--PESSGKTTLALH 74 (325)
T ss_pred cCCeEEEEEC--CCCCCHHHHHHH
Confidence 6799999985 999999999984
No 45
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=67.07 E-value=2.4 Score=41.30 Aligned_cols=22 Identities=18% Similarity=0.252 Sum_probs=16.3
Q ss_pred CcEEEEEEEcCCcccchhhcccCC
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
|+...+. .|||||||+|+-...
T Consensus 3 ge~i~l~--G~sGsGKSTl~~~la 24 (176)
T PRK09825 3 GESYILM--GVSGSGKSLIGSKIA 24 (176)
T ss_pred CcEEEEE--CCCCCCHHHHHHHHH
Confidence 5555555 899999999986444
No 46
>PRK08233 hypothetical protein; Provisional
Probab=67.04 E-value=3.3 Score=38.80 Aligned_cols=33 Identities=27% Similarity=0.183 Sum_probs=19.9
Q ss_pred EEEEEcCCcccchhhcccC-CCCCCceEEEeecce
Q psy17657 287 FVAAAFPSACGKTNLAMLM-PTLYDWKVECVGDDI 320 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~-p~~pGwkve~VGDDI 320 (652)
-|+-+.|||+|||+||... .-+++.++ +.+|+.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~-~~~d~~ 38 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKA-LYFDRY 38 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCce-EEECCE
Confidence 3444568999999999843 33444422 334444
No 47
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=66.77 E-value=3.1 Score=45.43 Aligned_cols=37 Identities=35% Similarity=0.537 Sum_probs=21.4
Q ss_pred CCCcEEEEEEEcCCcccchhh----cccCCCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNL----AMLMPTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnl----AMl~p~~pGwkve~VGDDI 320 (652)
.+|+ |++-=.|||||||+| |-|..+..| .|.+=|.|+
T Consensus 27 ~~Ge--f~vllGPSGcGKSTlLr~IAGLe~~~~G-~I~i~g~~v 67 (338)
T COG3839 27 EDGE--FVVLLGPSGCGKSTLLRMIAGLEEPTSG-EILIDGRDV 67 (338)
T ss_pred cCCC--EEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEC
Confidence 3454 444458999999987 444454455 233334333
No 48
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=66.74 E-value=3.4 Score=39.19 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=13.2
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
++-..|||||||+||-
T Consensus 4 ~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 4 IYVVGPSGAGKDTLLD 19 (179)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556899999999984
No 49
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=65.72 E-value=3 Score=42.15 Aligned_cols=16 Identities=31% Similarity=0.272 Sum_probs=13.3
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
|+-+.|||||||+||-
T Consensus 2 igI~G~sGSGKTTla~ 17 (220)
T cd02025 2 IGIAGSVAVGKSTTAR 17 (220)
T ss_pred EEeeCCCCCCHHHHHH
Confidence 4567899999999985
No 50
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=65.17 E-value=4.2 Score=34.96 Aligned_cols=21 Identities=33% Similarity=0.404 Sum_probs=15.5
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.++..+|. .|+|||||.||..
T Consensus 18 ~~~~v~i~--G~~G~GKT~l~~~ 38 (151)
T cd00009 18 PPKNLLLY--GPPGTGKTTLARA 38 (151)
T ss_pred CCCeEEEE--CCCCCCHHHHHHH
Confidence 45555554 7999999999774
No 51
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=65.13 E-value=1.9 Score=48.78 Aligned_cols=75 Identities=19% Similarity=0.399 Sum_probs=40.7
Q ss_pred cEEEEEEEcCCcccchhhcccCCC-C--CCceEEEee-cceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHHHhhc
Q psy17657 284 KKMFVAAAFPSACGKTNLAMLMPT-L--YDWKVECVG-DDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTI 359 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl~p~-~--pGwkve~VG-DDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~am~~l 359 (652)
+-..|+-+.|||||||+|+-..-. + .|.++-.|. ||. .+-..+--+++.-||.+-.|.----+...+-+.+.++|
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDf-YLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L 289 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDF-YLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETL 289 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCc-cCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHH
Confidence 456777889999999999743311 1 366666554 444 23111112345557777665532112334444555554
No 52
>PRK00131 aroK shikimate kinase; Reviewed
Probab=64.29 E-value=4.4 Score=37.39 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=17.0
Q ss_pred CCcEEEEEEEcCCcccchhhcccC
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++...+++ .|+|||||++|=..
T Consensus 3 ~~~~i~l~--G~~GsGKstla~~L 24 (175)
T PRK00131 3 KGPNIVLI--GFMGAGKSTIGRLL 24 (175)
T ss_pred CCCeEEEE--cCCCCCHHHHHHHH
Confidence 46666666 79999999998643
No 53
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=64.26 E-value=4.1 Score=38.50 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=13.8
Q ss_pred cEEEEEEEcCCcccchhhccc
Q psy17657 284 KKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl 304 (652)
+...+. .|||||||+||-+
T Consensus 2 ~ii~l~--G~~GsGKsTl~~~ 20 (180)
T TIGR03263 2 LLIVIS--GPSGVGKSTLVKA 20 (180)
T ss_pred cEEEEE--CCCCCCHHHHHHH
Confidence 344444 6999999998764
No 54
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=63.79 E-value=7.6 Score=41.26 Aligned_cols=57 Identities=25% Similarity=0.318 Sum_probs=39.4
Q ss_pred eeCCCCcEEEEEEEcCCcccchhh----cccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNL----AMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGF 340 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnl----AMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~Gf 340 (652)
++=|+|+..=|- .|||||||.| +.+.++..| +|++-|.||.-+ .+-++|+|---.|+
T Consensus 29 l~V~~Gei~~ii--GgSGsGKStlLr~I~Gll~P~~G-eI~i~G~~i~~l---s~~~~~~ir~r~Gv 89 (263)
T COG1127 29 LDVPRGEILAIL--GGSGSGKSTLLRLILGLLRPDKG-EILIDGEDIPQL---SEEELYEIRKRMGV 89 (263)
T ss_pred eeecCCcEEEEE--CCCCcCHHHHHHHHhccCCCCCC-eEEEcCcchhcc---CHHHHHHHHhheeE
Confidence 344778877666 7999999987 345566777 688888887654 34456665555555
No 55
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=63.75 E-value=27 Score=39.10 Aligned_cols=110 Identities=25% Similarity=0.360 Sum_probs=73.8
Q ss_pred CCCCHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEE
Q psy17657 35 SSVSPKLLKFITESAN-----LCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFIC 109 (652)
Q Consensus 35 ~~l~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~ 109 (652)
..-.+.++++|++... -|.|++|+|+.|+++=.+.+++.+.+.|..+-... |.-+-++ -+.+.-.-.++-
T Consensus 131 ~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~vE~-PtY~~~~----~~~~~~g~~~~~ 205 (459)
T COG1167 131 TAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLVED-PTYPGAL----QALEALGARVIP 205 (459)
T ss_pred CCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEEcC-CCcHHHH----HHHHHcCCcEEe
Confidence 3455677777777665 69999999999999999988887776665555431 2111111 123333333332
Q ss_pred ecCCCCcCCCCCCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCC
Q psy17657 110 TVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLS 169 (652)
Q Consensus 110 t~~~~da~p~~~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s 169 (652)
.|...+| ++++.+.+.+... +=|=+||+|-.-=|.|.-+|
T Consensus 206 -------vp~d~~G--------~~~e~le~~~~~~-----~~k~~y~~P~~qNPtG~tms 245 (459)
T COG1167 206 -------VPVDEDG--------IDPEALEEALAQW-----KPKAVYVTPTFQNPTGVTMS 245 (459)
T ss_pred -------cCCCCCC--------CCHHHHHHHHhhc-----CCcEEEECCCCCCCCCCccC
Confidence 2222223 5788888888765 77999999999999999876
No 56
>PLN02348 phosphoribulokinase
Probab=63.50 E-value=4.2 Score=45.33 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=17.0
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
++..-|+-|.|||||||+||=
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~ 67 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMR 67 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 455677788999999999874
No 57
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=63.04 E-value=2.7 Score=40.25 Aligned_cols=13 Identities=31% Similarity=0.176 Sum_probs=11.1
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|||||||++|=.
T Consensus 2 G~sGsGKSTla~~ 14 (163)
T PRK11545 2 GVSGSGKSAVASE 14 (163)
T ss_pred CCCCCcHHHHHHH
Confidence 5899999999854
No 58
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=62.83 E-value=3.8 Score=39.90 Aligned_cols=30 Identities=30% Similarity=0.309 Sum_probs=18.8
Q ss_pred EEEEcCCcccchhhcccCCC-C--CCceEEEee
Q psy17657 288 VAAAFPSACGKTNLAMLMPT-L--YDWKVECVG 317 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~p~-~--pGwkve~VG 317 (652)
|+-+.+||||||+||-..-. + .|-++.+|.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~ 34 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVIS 34 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 45567999999999854322 2 244555553
No 59
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=62.79 E-value=3.7 Score=40.94 Aligned_cols=18 Identities=39% Similarity=0.429 Sum_probs=14.5
Q ss_pred EEEEcCCcccchhhcccC
Q psy17657 288 VAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~ 305 (652)
|+-+.+||||||+||-..
T Consensus 2 i~i~G~sgsGKTtla~~l 19 (187)
T cd02024 2 VGISGVTNSGKTTLAKLL 19 (187)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 456789999999998743
No 60
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=62.74 E-value=4.4 Score=39.91 Aligned_cols=22 Identities=23% Similarity=0.108 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+=|+ .|||||||.||+.
T Consensus 17 ~~g~i~~i~--G~~GsGKT~l~~~ 38 (235)
T cd01123 17 ETGSITEIF--GEFGSGKTQLCHQ 38 (235)
T ss_pred CCCeEEEEE--CCCCCCHHHHHHH
Confidence 457666665 8999999999974
No 61
>PRK09354 recA recombinase A; Provisional
Probab=62.53 E-value=3.9 Score=44.78 Aligned_cols=22 Identities=36% Similarity=0.658 Sum_probs=19.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+=|.| |+|||||+||+.
T Consensus 58 p~G~IteI~G--~~GsGKTtLal~ 79 (349)
T PRK09354 58 PRGRIVEIYG--PESSGKTTLALH 79 (349)
T ss_pred cCCeEEEEEC--CCCCCHHHHHHH
Confidence 7799999995 999999999984
No 62
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=62.31 E-value=4 Score=36.73 Aligned_cols=15 Identities=33% Similarity=0.474 Sum_probs=12.7
Q ss_pred EcCCcccchhhcccC
Q psy17657 291 AFPSACGKTNLAMLM 305 (652)
Q Consensus 291 AFPSaCGKTnlAMl~ 305 (652)
..|+|||||++|-..
T Consensus 5 ~G~pgsGKSt~a~~l 19 (143)
T PF13671_consen 5 CGPPGSGKSTLAKRL 19 (143)
T ss_dssp EESTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 479999999999853
No 63
>COG0478 RIO-like serine/threonine protein kinase fused to N-terminal HTH domain [Signal transduction mechanisms]
Probab=62.22 E-value=4.6 Score=43.63 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=37.2
Q ss_pred CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcccccHHHHHHhc
Q psy17657 132 ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIA 200 (652)
Q Consensus 132 ~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMtR~g~~v~~~lg 200 (652)
|+++++...|..|.+=-+--| ...+-.|.|||=+.|=++..+.|.+-| ++++||
T Consensus 43 ~~~~~~~~~L~~L~~l~lv~r-------------~~~~y~Gy~lT~~GyD~LAL~~l~~r~--~ve~iG 96 (304)
T COG0478 43 MDEEELLYRLKRLDKLKLVSR-------------RTISYEGYQLTFSGYDALALHALVKRG--IVEAIG 96 (304)
T ss_pred CCHHHHHHHHHHHHhcCceec-------------cCCcceeEEEEecchhHHHHHHHHHcC--hHHhhc
Confidence 566777767766643222111 356778999999999999999988766 446665
No 64
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=61.65 E-value=3.1 Score=36.43 Aligned_cols=12 Identities=50% Similarity=0.565 Sum_probs=10.4
Q ss_pred cCCcccchhhcc
Q psy17657 292 FPSACGKTNLAM 303 (652)
Q Consensus 292 FPSaCGKTnlAM 303 (652)
.|+|||||.+|=
T Consensus 5 G~~G~GKT~l~~ 16 (132)
T PF00004_consen 5 GPPGTGKTTLAR 16 (132)
T ss_dssp SSTTSSHHHHHH
T ss_pred CcCCCCeeHHHH
Confidence 699999999864
No 65
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=61.12 E-value=4.4 Score=43.91 Aligned_cols=22 Identities=36% Similarity=0.671 Sum_probs=19.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|++ |+|||||+||+-
T Consensus 53 p~G~iteI~G--~~GsGKTtLaL~ 74 (321)
T TIGR02012 53 PRGRIIEIYG--PESSGKTTLALH 74 (321)
T ss_pred cCCeEEEEEC--CCCCCHHHHHHH
Confidence 6799998885 899999999883
No 66
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=61.00 E-value=6.6 Score=38.59 Aligned_cols=25 Identities=28% Similarity=0.214 Sum_probs=18.2
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..=+. .|||||||+|.-+
T Consensus 16 l~i~~G~~~~l~--G~nG~GKSTLl~~ 40 (176)
T cd03238 16 VSIPLNVLVVVT--GVSGSGKSTLVNE 40 (176)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 344567776665 8999999999543
No 67
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=61.00 E-value=4.5 Score=42.28 Aligned_cols=22 Identities=18% Similarity=-0.028 Sum_probs=18.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|..+=|+ .|+|||||+|+|-
T Consensus 93 ~~g~i~ei~--G~~g~GKT~l~~~ 114 (310)
T TIGR02236 93 ETQAITEVF--GEFGSGKTQICHQ 114 (310)
T ss_pred CCCeEEEEE--CCCCCCHHHHHHH
Confidence 458888888 4999999999883
No 68
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=60.85 E-value=4.5 Score=41.68 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=18.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|..+-|+ .|+|||||.||+-
T Consensus 34 p~gs~~lI~--G~pGtGKT~l~~q 55 (259)
T TIGR03878 34 PAYSVINIT--GVSDTGKSLMVEQ 55 (259)
T ss_pred ECCcEEEEE--cCCCCCHHHHHHH
Confidence 568787777 8999999999984
No 69
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=60.75 E-value=3.5 Score=46.14 Aligned_cols=59 Identities=14% Similarity=0.089 Sum_probs=43.7
Q ss_pred CeEEEecCCCccccccccchhhhhhhhcccc-ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 241 MEIASYGSGYGGNSLLGKKCFALRINQVKEP-NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 241 r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
....||..=-||=.+ -|-|.=|++..+++ .|..+++.-|.|--.| .|+|||||-+|=+.
T Consensus 109 ~~~~~f~~~~g~~~~--~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~----GPPGcGKTllArai 168 (413)
T PLN00020 109 QRTRSFDNLVGGYYI--APAFMDKVAVHIAKNFLALPNIKVPLILGIW----GGKGQGKSFQCELV 168 (413)
T ss_pred hhhcchhhhcCcccc--CHHHHHHHHHHHHhhhhhccCCCCCeEEEee----CCCCCCHHHHHHHH
Confidence 456677665566554 56788889999998 7777888888775544 79999999886543
No 70
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=60.71 E-value=6.2 Score=42.45 Aligned_cols=40 Identities=33% Similarity=0.432 Sum_probs=23.3
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhc-ccC---CCCCCceEEEeecce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLA-MLM---PTLYDWKVECVGDDI 320 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlA-Ml~---p~~pGwkve~VGDDI 320 (652)
++=++|+ +++--.|||||||+|- |+. .+-.| +|.+=|.||
T Consensus 22 l~I~~ge--f~vliGpSGsGKTTtLkMINrLiept~G-~I~i~g~~i 65 (309)
T COG1125 22 LTIEEGE--FLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDI 65 (309)
T ss_pred EEecCCe--EEEEECCCCCcHHHHHHHHhcccCCCCc-eEEECCeec
Confidence 3445675 4455589999999874 432 23345 344445554
No 71
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=60.58 E-value=4.7 Score=42.60 Aligned_cols=21 Identities=14% Similarity=0.044 Sum_probs=18.3
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|..+-|+| |+|||||.|||
T Consensus 100 ~~g~vtei~G--~~GsGKT~l~~ 120 (317)
T PRK04301 100 ETQSITEFYG--EFGSGKTQICH 120 (317)
T ss_pred cCCcEEEEEC--CCCCCHhHHHH
Confidence 5688888884 99999999988
No 72
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=60.45 E-value=5.4 Score=38.08 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=15.8
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|+...++ .|||||||++|..
T Consensus 2 ~~~i~l~--G~~gsGKst~a~~ 21 (175)
T cd00227 2 GRIIILN--GGSSAGKSSIARA 21 (175)
T ss_pred CCEEEEE--CCCCCCHHHHHHH
Confidence 5555555 7999999999984
No 73
>KOG0733|consensus
Probab=60.36 E-value=4.3 Score=47.92 Aligned_cols=51 Identities=35% Similarity=0.449 Sum_probs=32.6
Q ss_pred EecCCCccccccccchhhh--hhhhcccc--ceeEeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 245 SYGSGYGGNSLLGKKCFAL--RINQVKEP--NNRILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 245 S~GSgYGGNaLLGKKcfAL--RiAS~~ar--HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|| +-.||+. ||++- ++...|-. -.+=|||..|.|-..| .|.|||||.||=.
T Consensus 188 ~f-~diGG~d----~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlH----GPPGCGKT~lA~A 242 (802)
T KOG0733|consen 188 SF-SDIGGLD----KTLAELCELIIHIKHPEVFSSLGVRPPRGVLLH----GPPGCGKTSLANA 242 (802)
T ss_pred ch-hhccChH----HHHHHHHHHHHHhcCchhHhhcCCCCCCceeee----CCCCccHHHHHHH
Confidence 55 5568875 46431 22222222 2345799999996655 8999999998864
No 74
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=60.19 E-value=5 Score=41.63 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=24.0
Q ss_pred CCCcEEEEEEEcCCcccchhhcccCC----CCCCceEEEeecceEEE
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLMP----TLYDWKVECVGDDIAWM 323 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~p----~~pGwkve~VGDDIAWm 323 (652)
++|+..-|. .|||||||+|-=+.. +-.| +|.+-|-|+.=+
T Consensus 29 ~~Ge~vaI~--GpSGSGKSTLLniig~ld~pt~G-~v~i~g~d~~~l 72 (226)
T COG1136 29 EAGEFVAIV--GPSGSGKSTLLNLLGGLDKPTSG-EVLINGKDLTKL 72 (226)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcccCCCCc-eEEECCEEcCcC
Confidence 457655555 899999999732222 2234 455666566544
No 75
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=59.80 E-value=5.9 Score=39.75 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=17.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=+.|+..=++ .|||||||+|++
T Consensus 16 l~i~~Ge~~~l~--G~sGsGKSTL~~ 39 (226)
T cd03270 16 VDIPRNKLVVIT--GVSGSGKSSLAF 39 (226)
T ss_pred eecCCCcEEEEE--cCCCCCHHHHHH
Confidence 444668755444 899999999973
No 76
>PRK05541 adenylylsulfate kinase; Provisional
Probab=59.78 E-value=6 Score=37.57 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=15.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++|....+ ..|||||||++|=
T Consensus 5 ~~~~~I~i--~G~~GsGKst~a~ 25 (176)
T PRK05541 5 PNGYVIWI--TGLAGSGKTTIAK 25 (176)
T ss_pred CCCCEEEE--EcCCCCCHHHHHH
Confidence 34554444 4899999999984
No 77
>KOG0951|consensus
Probab=59.74 E-value=7.7 Score=48.93 Aligned_cols=37 Identities=32% Similarity=0.433 Sum_probs=28.6
Q ss_pred ccccccchhhhhhhhcccc-------ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 253 NSLLGKKCFALRINQVKEP-------NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 253 NaLLGKKcfALRiAS~~ar-------HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
=+..|++. -.||.|.+.- |||+. .|.|.||||.|||.
T Consensus 302 ~aF~g~~s-LNrIQS~v~daAl~~~EnmLlC---------------APTGaGKTNVAvLt 345 (1674)
T KOG0951|consen 302 PAFFGKQS-LNRIQSKVYDAALRGDENMLLC---------------APTGAGKTNVAVLT 345 (1674)
T ss_pred hhcccchh-hhHHHHHHHHHHhcCcCcEEEe---------------ccCCCCchHHHHHH
Confidence 34566766 7899997764 88875 37789999999984
No 78
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=59.52 E-value=1.8 Score=43.11 Aligned_cols=27 Identities=33% Similarity=0.804 Sum_probs=18.8
Q ss_pred CCcccchhhcccCCCCCC-ceEEEeecce
Q psy17657 293 PSACGKTNLAMLMPTLYD-WKVECVGDDI 320 (652)
Q Consensus 293 PSaCGKTnlAMl~p~~pG-wkve~VGDDI 320 (652)
+-|||||++|+..-.|=| |- .+=.|||
T Consensus 7 tiGCGKTTva~aL~~LFg~wg-HvQnDnI 34 (168)
T PF08303_consen 7 TIGCGKTTVALALSNLFGEWG-HVQNDNI 34 (168)
T ss_pred CCCcCHHHHHHHHHHHcCCCC-ccccCCC
Confidence 569999999986554444 62 4556666
No 79
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=58.80 E-value=6.2 Score=41.71 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=17.8
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=..|+..=+. .|||||||+||.+
T Consensus 29 ~i~~Ge~lgiv--GeSGsGKSTL~r~ 52 (252)
T COG1124 29 EIERGETLGIV--GESGSGKSTLARL 52 (252)
T ss_pred EecCCCEEEEE--cCCCCCHHHHHHH
Confidence 33457665444 7999999999986
No 80
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=58.77 E-value=10 Score=40.50 Aligned_cols=42 Identities=26% Similarity=0.360 Sum_probs=30.2
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcc----cCCCCCCceEEEeecceEEE
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAM----LMPTLYDWKVECVGDDIAWM 323 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAM----l~p~~pGwkve~VGDDIAWm 323 (652)
+=.+|+..-+. +.||||||+||= |.++..| +|.+=|.||.=+
T Consensus 35 ~i~~ge~~glV--GESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~ 80 (268)
T COG4608 35 SIKEGETLGLV--GESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKL 80 (268)
T ss_pred EEcCCCEEEEE--ecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhc
Confidence 34578887777 899999999985 3355566 577778776544
No 81
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=58.22 E-value=5.9 Score=39.41 Aligned_cols=14 Identities=14% Similarity=0.169 Sum_probs=10.7
Q ss_pred EcCCcccchhhccc
Q psy17657 291 AFPSACGKTNLAML 304 (652)
Q Consensus 291 AFPSaCGKTnlAMl 304 (652)
..++|||||+++=+
T Consensus 11 tG~igsGKSt~~~~ 24 (208)
T PRK14731 11 TGGIGSGKSTVCRF 24 (208)
T ss_pred ECCCCCCHHHHHHH
Confidence 34689999998744
No 82
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=58.19 E-value=3 Score=38.91 Aligned_cols=19 Identities=16% Similarity=0.174 Sum_probs=14.6
Q ss_pred cCCcccchhhcccCCCCCC
Q psy17657 292 FPSACGKTNLAMLMPTLYD 310 (652)
Q Consensus 292 FPSaCGKTnlAMl~p~~pG 310 (652)
.|||||||++|.......|
T Consensus 5 G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 5 GVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CCCCCCHHHHHHHHHHhcC
Confidence 7999999999986544334
No 83
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=57.81 E-value=6 Score=44.21 Aligned_cols=26 Identities=35% Similarity=0.622 Sum_probs=20.9
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|++.=|. .|||||||+|+-+.
T Consensus 356 l~i~~G~~vaIv--G~SGsGKSTLl~lL 381 (529)
T TIGR02868 356 LDLPPGERVAIL--GPSGSGKSTLLMLL 381 (529)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 344679888777 89999999998764
No 84
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=57.70 E-value=4.3 Score=39.65 Aligned_cols=19 Identities=42% Similarity=0.445 Sum_probs=14.7
Q ss_pred EEEEcCCcccchhhcccCC
Q psy17657 288 VAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~p 306 (652)
+-=+.|||||||-||-...
T Consensus 6 ~ll~GpsGvGKT~la~~la 24 (171)
T PF07724_consen 6 FLLAGPSGVGKTELAKALA 24 (171)
T ss_dssp EEEESSTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 3445899999999987644
No 85
>PRK08118 topology modulation protein; Reviewed
Probab=57.49 E-value=6 Score=38.17 Aligned_cols=19 Identities=26% Similarity=0.380 Sum_probs=13.8
Q ss_pred EEEEEEEcCCcccchhhcccC
Q psy17657 285 KMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+..|. .|||||||+||=..
T Consensus 3 rI~I~--G~~GsGKSTlak~L 21 (167)
T PRK08118 3 KIILI--GSGGSGKSTLARQL 21 (167)
T ss_pred EEEEE--CCCCCCHHHHHHHH
Confidence 34444 69999999998643
No 86
>PRK08084 DNA replication initiation factor; Provisional
Probab=56.89 E-value=7 Score=39.63 Aligned_cols=23 Identities=9% Similarity=0.196 Sum_probs=17.6
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++++...|+. .|+|||||-||..
T Consensus 42 ~~~~~~l~l~--Gp~G~GKThLl~a 64 (235)
T PRK08084 42 QEHSGYIYLW--SREGAGRSHLLHA 64 (235)
T ss_pred CCCCCeEEEE--CCCCCCHHHHHHH
Confidence 4445566777 7999999999874
No 87
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=56.41 E-value=3.3 Score=38.97 Aligned_cols=20 Identities=10% Similarity=-0.079 Sum_probs=16.0
Q ss_pred EEEEEEEcCCcccchhhccc
Q psy17657 285 KMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl 304 (652)
...|+-..|+|||||++|..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~ 22 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEK 22 (188)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 44667778999999999854
No 88
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=56.31 E-value=5.7 Score=41.17 Aligned_cols=20 Identities=30% Similarity=0.345 Sum_probs=17.8
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|..+=|+ .|||||||.|+|
T Consensus 37 ~g~itEi~--G~~gsGKTql~l 56 (256)
T PF08423_consen 37 TGSITEIV--GESGSGKTQLCL 56 (256)
T ss_dssp TTSEEEEE--ESTTSSHHHHHH
T ss_pred CCcEEEEE--EecccccchHHH
Confidence 48889888 799999999987
No 89
>PRK00889 adenylylsulfate kinase; Provisional
Probab=56.23 E-value=8.4 Score=36.55 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=24.9
Q ss_pred CCCcEEEEEEEcCCcccchhhcccCC-C--CCCceEEEeecc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLMP-T--LYDWKVECVGDD 319 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~p-~--~pGwkve~VGDD 319 (652)
+.|+...++ .+||||||++|...- . ..|+++..|.-|
T Consensus 2 ~~g~~i~~~--G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 2 QRGVTVWFT--GLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CCCeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 356666666 899999999986322 1 257777766444
No 90
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=56.09 E-value=7.1 Score=44.84 Aligned_cols=22 Identities=23% Similarity=0.353 Sum_probs=18.4
Q ss_pred eeCCCCcEEEEEEEcCCcccchhh
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNL 301 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnl 301 (652)
++=++|+...++ .|||||||+|
T Consensus 27 l~i~~GEiv~L~--G~SGsGKSTL 48 (504)
T TIGR03238 27 KELPSSSLLFLC--GSSGDGKSEI 48 (504)
T ss_pred eeecCCCEEEEE--CCCCCCHHHH
Confidence 344679988888 8999999998
No 91
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=55.76 E-value=7.1 Score=39.65 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=20.9
Q ss_pred CCCcEEEEEEEcCCcccchhhcc--cCCC-CCCceE
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM--LMPT-LYDWKV 313 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM--l~p~-~pGwkv 313 (652)
|.|...-+. .|+|||||.||+ +.-. -+|+++
T Consensus 22 ~~g~~~~i~--G~~G~GKTtl~~~~~~~~~~~g~~~ 55 (230)
T PRK08533 22 PAGSLILIE--GDESTGKSILSQRLAYGFLQNGYSV 55 (230)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHHHHHHHHhCCCcE
Confidence 567766666 899999999974 2222 256655
No 92
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=55.71 E-value=12 Score=39.95 Aligned_cols=37 Identities=32% Similarity=0.486 Sum_probs=24.0
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC----CCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM----PTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~----p~~pGwkve~VGDDI 320 (652)
+.|+..-|. .|||||||+|+.+. ++..| +|.+=|.||
T Consensus 39 ~~Ge~~~Iv--G~sGsGKSTLl~~l~gl~~p~~G-~i~~~g~~l 79 (327)
T PRK11308 39 ERGKTLAVV--GESGCGKSTLARLLTMIETPTGG-ELYYQGQDL 79 (327)
T ss_pred CCCCEEEEE--CCCCCcHHHHHHHHHcCCCCCCc-EEEECCEEc
Confidence 468776555 89999999997643 33345 344444444
No 93
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=55.34 E-value=23 Score=36.82 Aligned_cols=55 Identities=20% Similarity=0.370 Sum_probs=39.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhc----ccCCCCCCceEEEeecceEEEEeCCCccEEEeCC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLA----MLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINP 336 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlA----Ml~p~~pGwkve~VGDDIAWmr~~~dGrl~AINP 336 (652)
++--+|.+.-|- ..||+||+++- +|.-|-.| ++.+=|.+|. +|.|.||+|.+.+.
T Consensus 27 L~A~~GdVisII--GsSGSGKSTfLRCiN~LE~P~~G-~I~v~geei~-~k~~~~G~l~~ad~ 85 (256)
T COG4598 27 LQANAGDVISII--GSSGSGKSTFLRCINFLEKPSAG-SIRVNGEEIR-LKRDKDGQLKPADK 85 (256)
T ss_pred eecCCCCEEEEe--cCCCCchhHHHHHHHhhcCCCCc-eEEECCeEEE-eeeCCCCCeeeCCH
Confidence 344467776666 68999999763 45555566 5677778886 88899999998553
No 94
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=55.31 E-value=7.6 Score=38.99 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=18.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|+..-+. .|||||||+|+-+.
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~i 49 (250)
T PRK14247 27 PDNTITALM--GPSGSGKSTLLRVF 49 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 458777666 89999999998653
No 95
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=55.28 E-value=16 Score=25.44 Aligned_cols=25 Identities=20% Similarity=0.489 Sum_probs=19.4
Q ss_pred EeecceEEEEeCCCccEEEeCCCCce
Q psy17657 315 CVGDDIAWMKFDEEGNLRAINPESGF 340 (652)
Q Consensus 315 ~VGDDIAWmr~~~dGrl~AINPE~Gf 340 (652)
++.|++.++- ..||+|+|+|++.|-
T Consensus 3 ~~~~~~v~~~-~~~g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVG-STDGTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEE-cCCCEEEEEEcccCc
Confidence 4556677665 579999999999885
No 96
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=54.96 E-value=5.3 Score=41.01 Aligned_cols=52 Identities=31% Similarity=0.511 Sum_probs=38.6
Q ss_pred CcEEEEEEEcCCcccchhhcccCCCC---CCceEEEeecceEEEEeCCCcc--EEEeCCCCce
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMPTL---YDWKVECVGDDIAWMKFDEEGN--LRAINPESGF 340 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p~~---pGwkve~VGDDIAWmr~~~dGr--l~AINPE~Gf 340 (652)
|+..=|. .|||+||++|-|+..-+ .+=.|...|-++.=| |+|+| +|+-| .||
T Consensus 36 Ge~vaiV--G~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~l--dEd~rA~~R~~~--vGf 92 (228)
T COG4181 36 GETVAIV--GPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKL--DEDARAALRARH--VGF 92 (228)
T ss_pred CceEEEE--cCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhc--CHHHHHHhhccc--eeE
Confidence 7766555 79999999998876443 344799999999866 89995 56644 455
No 97
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=54.90 E-value=14 Score=27.41 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=18.1
Q ss_pred EeecceEEEEeCCCccEEEeCCC
Q psy17657 315 CVGDDIAWMKFDEEGNLRAINPE 337 (652)
Q Consensus 315 ~VGDDIAWmr~~~dGrl~AINPE 337 (652)
.|.||...+- +.||+|||+|++
T Consensus 18 ~v~~g~vyv~-~~dg~l~ald~~ 39 (40)
T PF13570_consen 18 AVAGGRVYVG-TGDGNLYALDAA 39 (40)
T ss_dssp EECTSEEEEE--TTSEEEEEETT
T ss_pred EEECCEEEEE-cCCCEEEEEeCC
Confidence 6778888886 679999999987
No 98
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=54.76 E-value=6 Score=41.36 Aligned_cols=16 Identities=31% Similarity=0.245 Sum_probs=13.4
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
++-+.|||||||||.|
T Consensus 16 ~viIG~sGSGKT~li~ 31 (241)
T PF04665_consen 16 MVIIGKSGSGKTTLIK 31 (241)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556899999999977
No 99
>KOG0060|consensus
Probab=54.55 E-value=8.7 Score=45.07 Aligned_cols=23 Identities=39% Similarity=0.830 Sum_probs=18.2
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlA 302 (652)
..=|+|+.--|| .|||||||+|-
T Consensus 456 ~~V~~g~~LLIt--G~sG~GKtSLl 478 (659)
T KOG0060|consen 456 LEVPSGQNLLIT--GPSGCGKTSLL 478 (659)
T ss_pred eEecCCCeEEEE--CCCCCchhHHH
Confidence 344678887888 79999999983
No 100
>PRK07261 topology modulation protein; Provisional
Probab=54.22 E-value=6.6 Score=37.93 Aligned_cols=15 Identities=33% Similarity=0.244 Sum_probs=12.5
Q ss_pred EcCCcccchhhcccC
Q psy17657 291 AFPSACGKTNLAMLM 305 (652)
Q Consensus 291 AFPSaCGKTnlAMl~ 305 (652)
..|||||||+||-..
T Consensus 6 ~G~~GsGKSTla~~l 20 (171)
T PRK07261 6 IGYSGSGKSTLARKL 20 (171)
T ss_pred EcCCCCCHHHHHHHH
Confidence 469999999999754
No 101
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=54.07 E-value=4.8 Score=35.84 Aligned_cols=13 Identities=38% Similarity=0.416 Sum_probs=11.5
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|||||||.||..
T Consensus 5 G~~G~GKS~l~~~ 17 (107)
T PF00910_consen 5 GPPGIGKSTLAKE 17 (107)
T ss_pred CCCCCCHHHHHHH
Confidence 6889999999885
No 102
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=53.88 E-value=7.3 Score=38.52 Aligned_cols=21 Identities=29% Similarity=0.331 Sum_probs=16.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|+..-|+ .|+|||||.||+
T Consensus 18 ~~G~~~~i~--G~~G~GKT~l~~ 38 (229)
T TIGR03881 18 PRGFFVAVT--GEPGTGKTIFCL 38 (229)
T ss_pred cCCeEEEEE--CCCCCChHHHHH
Confidence 457666666 599999999986
No 103
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=53.67 E-value=8.8 Score=37.34 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=19.6
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|..+
T Consensus 26 ~~i~~G~~~~i~--G~nG~GKSTLl~~ 50 (204)
T cd03250 26 LEVPKGELVAIV--GPVGSGKSSLLSA 50 (204)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHH
Confidence 334568888777 8999999998764
No 104
>PRK01184 hypothetical protein; Provisional
Probab=53.30 E-value=5.4 Score=38.10 Aligned_cols=25 Identities=16% Similarity=0.139 Sum_probs=15.7
Q ss_pred cCCcccchhhcccCCCCCCceEEEee
Q psy17657 292 FPSACGKTNLAMLMPTLYDWKVECVG 317 (652)
Q Consensus 292 FPSaCGKTnlAMl~p~~pGwkve~VG 317 (652)
.|+|||||++|-+.. -.|+.+--.|
T Consensus 8 G~~GsGKsT~a~~~~-~~g~~~i~~~ 32 (184)
T PRK01184 8 GMPGSGKGEFSKIAR-EMGIPVVVMG 32 (184)
T ss_pred CCCCCCHHHHHHHHH-HcCCcEEEhh
Confidence 368899999987532 2465544334
No 105
>PRK07667 uridine kinase; Provisional
Probab=53.26 E-value=8.6 Score=37.70 Aligned_cols=36 Identities=14% Similarity=0.116 Sum_probs=24.4
Q ss_pred cEEEEEEEcCCcccchhhcccC-CCC--CCceEEEeecc
Q psy17657 284 KKMFVAAAFPSACGKTNLAMLM-PTL--YDWKVECVGDD 319 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl~-p~~--pGwkve~VGDD 319 (652)
+..-|+-+.+||||||++|=.. ..+ .|.++.++.-|
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~D 54 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHID 54 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence 3366777889999999987533 222 56676666655
No 106
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=53.22 E-value=19 Score=36.96 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=33.7
Q ss_pred eEEEEcCCCCeEEEecC---CCccccccccchhhhhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 232 TIILHKPDTMEIASYGS---GYGGNSLLGKKCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 232 ~~I~h~p~~r~I~S~GS---gYGGNaLLGKKcfALRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|.-+|+...+..+-. .|++..+| + -+.++=..|+..-+. .|||||||+|.-+
T Consensus 9 ~~~~~~~~~~~~l~~~nl~~~~~~~~il-------~----------~vsl~i~~Ge~~~I~--G~nGsGKSTLl~~ 65 (267)
T PRK14237 9 RHIITFPEEEIALSTKDLHVYYGKKEAI-------K----------GIDMQFEKNKITALI--GPSGSGKSTYLRS 65 (267)
T ss_pred ceeEecCCCCeEEEEeeEEEEECCeeeE-------e----------eeEEEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 56777788887776532 23332221 1 112333468887777 8999999999754
No 107
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.17 E-value=9.7 Score=37.78 Aligned_cols=22 Identities=27% Similarity=0.310 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~ 46 (241)
T cd03256 25 NPGEFVALI--GPSGAGKSTLLRC 46 (241)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457777666 7999999999764
No 108
>PRK05439 pantothenate kinase; Provisional
Probab=53.13 E-value=8.7 Score=41.50 Aligned_cols=36 Identities=31% Similarity=0.251 Sum_probs=23.6
Q ss_pred CCcEEEEEEEcCCcccchhhcccCC-CC----CCceEEEee
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMP-TL----YDWKVECVG 317 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p-~~----pGwkve~VG 317 (652)
.++..-|+-|.|||||||+||=..- -+ .|-+|.+|.
T Consensus 83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~ 123 (311)
T PRK05439 83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVT 123 (311)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEe
Confidence 3556677778899999999984221 12 344566555
No 109
>PRK03846 adenylylsulfate kinase; Provisional
Probab=53.08 E-value=8.9 Score=37.52 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=26.5
Q ss_pred CCCCcEEEEEEEcCCcccchhhcccCCC-C--CCceEEEe-ecceE
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAMLMPT-L--YDWKVECV-GDDIA 321 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl~p~-~--pGwkve~V-GDDIA 321 (652)
.++|....++ .+||||||+||-+.-. + .|+.+-++ ||+|.
T Consensus 21 ~~~~~~i~i~--G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 21 GHKGVVLWFT--GLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred CCCCEEEEEE--CCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 4567777777 6799999998864432 2 36655555 56654
No 110
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=52.99 E-value=7.2 Score=36.39 Aligned_cols=17 Identities=29% Similarity=0.378 Sum_probs=13.1
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..|||||||+|+-+
T Consensus 2 i~i~GpsGsGKstl~~~ 18 (137)
T cd00071 2 IVLSGPSGVGKSTLLKR 18 (137)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34458999999998764
No 111
>PLN02165 adenylate isopentenyltransferase
Probab=52.17 E-value=8.9 Score=41.94 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=20.2
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
.|+.|+...|+ .|+|||||.||...-
T Consensus 39 ~~~~g~iivIi--GPTGSGKStLA~~LA 64 (334)
T PLN02165 39 QNCKDKVVVIM--GATGSGKSRLSVDLA 64 (334)
T ss_pred cCCCCCEEEEE--CCCCCcHHHHHHHHH
Confidence 47778866555 799999999998544
No 112
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=51.89 E-value=11 Score=36.96 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (216)
T TIGR00960 27 TKGEMVFLV--GHSGAGKSTFLKL 48 (216)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777666 8999999999754
No 113
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=51.65 E-value=7.4 Score=40.79 Aligned_cols=33 Identities=24% Similarity=0.202 Sum_probs=19.4
Q ss_pred EEEEcCCcccchhhcc-cCCCCC--CceEEEeecceE
Q psy17657 288 VAAAFPSACGKTNLAM-LMPTLY--DWKVECVGDDIA 321 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM-l~p~~p--Gwkve~VGDDIA 321 (652)
++-+.|||||||+|+= |.-.++ |-. -+.+||+.
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~~~~~~-vi~~Dd~~ 37 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFGSDLVT-VICLDDYH 37 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhCCCceE-EEECcccc
Confidence 3455799999999875 333333 322 23356663
No 114
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=51.60 E-value=11 Score=36.88 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+=+
T Consensus 28 ~~G~~~~l~--G~nGsGKSTLl~~ 49 (218)
T cd03255 28 EKGEFVAIV--GPSGSGKSTLLNI 49 (218)
T ss_pred cCCCEEEEE--cCCCCCHHHHHHH
Confidence 468776666 8999999998653
No 115
>PLN02318 phosphoribulokinase/uridine kinase
Probab=51.57 E-value=9.4 Score=45.08 Aligned_cols=54 Identities=26% Similarity=0.294 Sum_probs=33.8
Q ss_pred ceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 231 RTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 231 k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+--|+-.|+ -.||--||- ++.|.+-.++. +. ++..-|+-|.|||||||+||-..
T Consensus 32 ~~~i~~~~~---~~sfd~g~~---------~~ira~qlL~~--------~~-~~riIIGIaGpSGSGKTTLAk~L 85 (656)
T PLN02318 32 RYEIVPIQD---PLSFEKGFF---------VVIRACQLLAQ--------KN-DGIILVGVAGPSGAGKTVFTEKV 85 (656)
T ss_pred ceEEEeCCC---ccccccchh---------hhhHHHHHHHh--------cC-CCeEEEEEECCCCCcHHHHHHHH
Confidence 334555554 468887763 34555544443 22 23567777889999999998643
No 116
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=51.54 E-value=14 Score=36.44 Aligned_cols=36 Identities=17% Similarity=0.196 Sum_probs=22.2
Q ss_pred EEEEcCCcccchhhccc--C--CCCCCceEEEeecceEEE
Q psy17657 288 VAAAFPSACGKTNLAML--M--PTLYDWKVECVGDDIAWM 323 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl--~--p~~pGwkve~VGDDIAWm 323 (652)
|.-+.|+|||||+|+-. . +.-.+-++-++.|.+..+
T Consensus 4 ilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~ 43 (198)
T cd01131 4 VLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFV 43 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCcccc
Confidence 45568999999998531 1 212244566777766543
No 117
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=51.53 E-value=13 Score=36.24 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=23.7
Q ss_pred EEEEcCCcccchhhc--ccCCCCCCceEEEeecceEEEEeC
Q psy17657 288 VAAAFPSACGKTNLA--MLMPTLYDWKVECVGDDIAWMKFD 326 (652)
Q Consensus 288 vaaAFPSaCGKTnlA--Ml~p~~pGwkve~VGDDIAWmr~~ 326 (652)
++--.|+|||||+|. ++....+.=-..++|.|+.=+.+.
T Consensus 12 v~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~ 52 (215)
T PTZ00132 12 LILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFY 52 (215)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEE
Confidence 455579999999998 233333221235677776555543
No 118
>PTZ00035 Rad51 protein; Provisional
Probab=51.48 E-value=8.1 Score=41.82 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=18.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+ .|+|||||.|++.
T Consensus 116 ~~G~iteI~--G~~GsGKT~l~~~ 137 (337)
T PTZ00035 116 ETGSITELF--GEFRTGKTQLCHT 137 (337)
T ss_pred CCCeEEEEE--CCCCCchhHHHHH
Confidence 458888888 4999999999874
No 119
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=51.34 E-value=11 Score=36.70 Aligned_cols=22 Identities=27% Similarity=0.333 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~ 45 (205)
T cd03226 24 YAGEIIALT--GKNGAGKTTLAKI 45 (205)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358777777 8999999999654
No 120
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=51.11 E-value=10 Score=39.83 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=24.3
Q ss_pred CCCcEEEEEEEcCCcccchhhcc----cCCCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM----LMPTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM----l~p~~pGwkve~VGDDI 320 (652)
.+|++.-|+ .|||||||+|-- |.++-.| .+.+-|+++
T Consensus 26 ~~Gevv~ii--GpSGSGKSTlLRclN~LE~~~~G-~I~i~g~~~ 66 (240)
T COG1126 26 EKGEVVVII--GPSGSGKSTLLRCLNGLEEPDSG-SITVDGEDV 66 (240)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHCCcCCCCc-eEEECCEec
Confidence 468888887 599999998743 4444455 344445444
No 121
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=51.10 E-value=11 Score=36.89 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++|+..-+. .|||||||+|+-+
T Consensus 23 ~~Ge~~~l~--G~nGsGKSTLl~~ 44 (213)
T cd03235 23 KPGEFLAIV--GPNGAGKSTLLKA 44 (213)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777666 8999999999764
No 122
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=51.03 E-value=11 Score=37.57 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~~ 47 (243)
T TIGR02315 26 NPGEFVAII--GPSGAGKSTLLRC 47 (243)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458776666 8999999999654
No 123
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=51.01 E-value=7.6 Score=34.27 Aligned_cols=16 Identities=31% Similarity=0.422 Sum_probs=11.5
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
+.--.|+|||||.++.
T Consensus 7 ~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 7 LVISGPPGSGKTTLIK 22 (131)
T ss_dssp EEEEE-TTSSHHHHHH
T ss_pred cEEEcCCCCCHHHHHH
Confidence 3344799999999876
No 124
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=50.54 E-value=8.9 Score=38.22 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=17.4
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|+.+
T Consensus 26 ~Ge~~~i~--G~nGsGKSTLl~~ 46 (236)
T TIGR03864 26 PGEFVALL--GPNGAGKSTLFSL 46 (236)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 58777777 8999999999765
No 125
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=50.48 E-value=10 Score=37.67 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.=
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (243)
T TIGR01978 24 KKGEIHAIM--GPNGSGKSTLSK 44 (243)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 457777776 899999999864
No 126
>PRK15453 phosphoribulokinase; Provisional
Probab=50.48 E-value=7.9 Score=41.66 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=14.8
Q ss_pred EEEEEEcCCcccchhhcc
Q psy17657 286 MFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAM 303 (652)
.-|+-|.+||||||++|-
T Consensus 6 piI~ItG~SGsGKTTva~ 23 (290)
T PRK15453 6 PIIAVTGSSGAGTTTVKR 23 (290)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456777899999999875
No 127
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=50.31 E-value=9.9 Score=36.78 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 22 ~~Ge~~~i~--G~nGsGKSTLl~~ 43 (206)
T TIGR03608 22 EKGKMYAII--GESGSGKSTLLNI 43 (206)
T ss_pred eCCcEEEEE--CCCCCCHHHHHHH
Confidence 358776666 8999999998654
No 128
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.01 E-value=12 Score=37.18 Aligned_cols=23 Identities=30% Similarity=0.405 Sum_probs=18.0
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
=+.|+..-+. .|||||||+|+-+
T Consensus 23 i~~Ge~~~l~--G~nGsGKSTLl~~ 45 (235)
T cd03261 23 VRRGEILAII--GPSGSGKSTLLRL 45 (235)
T ss_pred EcCCCEEEEE--CCCCCCHHHHHHH
Confidence 3468877777 8999999998653
No 129
>PRK02654 putative inner membrane protein translocase component YidC; Provisional
Probab=49.67 E-value=28 Score=38.74 Aligned_cols=88 Identities=25% Similarity=0.479 Sum_probs=60.9
Q ss_pred CcEEEEEEEcCCcccchhhcccCC-----CCCCceEEEeecceEEEEeCCCccEEEeCC-CCceeeecCCCCCCCCHHHH
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMP-----TLYDWKVECVGDDIAWMKFDEEGNLRAINP-ESGFFGVAPGTSCNTNPQAM 356 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p-----~~pGwkve~VGDDIAWmr~~~dGrl~AINP-E~GfFGVapGtn~~tnP~am 356 (652)
|+++-|- |=+-.||.--..+.. -.|-|+|. =|+|.+ ++++||.+-|..| ++-.=|.+||...++-=.-.
T Consensus 176 g~~~~~~--~q~~~g~~~~~~~~~~~~~~~~p~~~v~-kg~~~~--~~~~~g~~~al~pgd~ti~~~ipg~aa~~gflfi 250 (375)
T PRK02654 176 GESVKIQ--LQTTEGKPFSQLLAEYPNSKLSPTWKVT-KGEERV--KVSEDGTIEALAPGDATIQGTIPGLAANSGFLFI 250 (375)
T ss_pred cceeEEE--EecCCCCcHHHHHhcCCccccCceeEEe-cCceeE--EECCCCcEEEecCCceEEEEeecceecccCceeh
Confidence 4444444 455556654333321 13789884 699985 6699999999999 46677889998888877777
Q ss_pred hhccCCceeeeeeec-CCCcccccCC
Q psy17657 357 QTIFHNTMFTNVGTT-SDDGVYWEGL 381 (652)
Q Consensus 357 ~~l~kntIFTNVa~t-~dG~vwWeG~ 381 (652)
++|-+ |+.. +||.++|+=.
T Consensus 251 ~alg~------vg~~~~dg~i~wdi~ 270 (375)
T PRK02654 251 KALGQ------VGFYDVDGAINWDIL 270 (375)
T ss_pred Hhhcc------cCccCCCCceeHHHH
Confidence 77743 5554 6999999743
No 130
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=49.55 E-value=12 Score=36.33 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|+-
T Consensus 25 ~~G~~~~l~--G~nGsGKSTLl~ 45 (211)
T cd03225 25 KKGEFVLIV--GPNGSGKSTLLR 45 (211)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 357776666 899999999964
No 131
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=49.50 E-value=12 Score=36.60 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~ 45 (222)
T cd03224 24 PEGEIVALL--GRNGAGKTTLLKT 45 (222)
T ss_pred cCCeEEEEE--CCCCCCHHHHHHH
Confidence 357766666 8999999999764
No 132
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=49.45 E-value=8.8 Score=33.39 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=9.1
Q ss_pred EcCCcccchhhcc
Q psy17657 291 AFPSACGKTNLAM 303 (652)
Q Consensus 291 AFPSaCGKTnlAM 303 (652)
..++|+|||++|-
T Consensus 4 ~G~~GsGKtTia~ 16 (129)
T PF13238_consen 4 SGIPGSGKTTIAK 16 (129)
T ss_dssp EESTTSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3567777777765
No 133
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=49.42 E-value=9.4 Score=37.70 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=18.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|..+-|+ .|+|+|||.||+-
T Consensus 21 ~~g~i~~i~--G~~GsGKT~l~~~ 42 (225)
T PRK09361 21 ERGTITQIY--GPPGSGKTNICLQ 42 (225)
T ss_pred CCCeEEEEE--CCCCCCHHHHHHH
Confidence 568888888 5999999999884
No 134
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=49.35 E-value=13 Score=35.48 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=18.9
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|+-+
T Consensus 23 ~~i~~Ge~~~i~--G~nGsGKStLl~~ 47 (178)
T cd03247 23 LELKQGEKIALL--GRSGSGKSTLLQL 47 (178)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 334568776666 8999999999764
No 135
>PRK06762 hypothetical protein; Provisional
Probab=49.27 E-value=10 Score=35.48 Aligned_cols=17 Identities=29% Similarity=0.249 Sum_probs=13.2
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|.-..+||||||++|-.
T Consensus 5 i~i~G~~GsGKST~A~~ 21 (166)
T PRK06762 5 IIIRGNSGSGKTTIAKQ 21 (166)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34458999999999864
No 136
>PRK07429 phosphoribulokinase; Provisional
Probab=49.14 E-value=11 Score=40.85 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=16.8
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
++..-|+-+.|||||||+||=
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~ 26 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLR 26 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 456677778899999999864
No 137
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=49.08 E-value=11 Score=35.85 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~ 46 (166)
T cd03223 25 KPGDRLLIT--GPSGTGKSSLFRA 46 (166)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 358777776 8999999999653
No 138
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=48.85 E-value=9.7 Score=31.50 Aligned_cols=29 Identities=28% Similarity=0.204 Sum_probs=19.5
Q ss_pred EEEcCCcccchhhcc-cCCCCCCceEEEee
Q psy17657 289 AAAFPSACGKTNLAM-LMPTLYDWKVECVG 317 (652)
Q Consensus 289 aaAFPSaCGKTnlAM-l~p~~pGwkve~VG 317 (652)
+-..|||||||.+|= |...+.|+++.++-
T Consensus 3 ~i~G~~gsGKst~~~~l~~~l~~~~~~~i~ 32 (69)
T cd02019 3 AITGGSGSGKSTVAKKLAEQLGGRSVVVLD 32 (69)
T ss_pred EEECCCCCCHHHHHHHHHHHhcCCCEEEEe
Confidence 335899999999875 33334566666663
No 139
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=48.67 E-value=9.1 Score=43.18 Aligned_cols=38 Identities=32% Similarity=0.341 Sum_probs=27.1
Q ss_pred ccccccchhhhhhhhcccc--ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 253 NSLLGKKCFALRINQVKEP--NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 253 NaLLGKKcfALRiAS~~ar--HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
--|||+.. .||=+..-++ ||..- .|.|||||+||.+..
T Consensus 30 ~HLlg~~~-~lrr~v~~~~l~SmIl~---------------GPPG~GKTTlA~liA 69 (436)
T COG2256 30 EHLLGEGK-PLRRAVEAGHLHSMILW---------------GPPGTGKTTLARLIA 69 (436)
T ss_pred HhhhCCCc-hHHHHHhcCCCceeEEE---------------CCCCCCHHHHHHHHH
Confidence 45778766 7777666555 55544 488999999999844
No 140
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=48.66 E-value=13 Score=36.64 Aligned_cols=22 Identities=41% Similarity=0.699 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|+-+
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~ 45 (227)
T cd03260 24 PKGEITALI--GPSGCGKSTLLRL 45 (227)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358777777 8999999999654
No 141
>PLN02796 D-glycerate 3-kinase
Probab=48.47 E-value=10 Score=41.79 Aligned_cols=55 Identities=20% Similarity=0.439 Sum_probs=29.9
Q ss_pred EEEEEEcCCcccchhhcccCCC-C--CCceEEEe-ecceEEEEeCCCccEEEeCCCCcee
Q psy17657 286 MFVAAAFPSACGKTNLAMLMPT-L--YDWKVECV-GDDIAWMKFDEEGNLRAINPESGFF 341 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~p~-~--pGwkve~V-GDDIAWmr~~~dGrl~AINPE~GfF 341 (652)
..|+-+.|||||||+|+...-. + .|.++-.| =||.- +...+--+++.-||++-+|
T Consensus 101 liIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY-Lt~~e~~~L~~q~P~n~Ll 159 (347)
T PLN02796 101 LVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY-LTAADQAKLAEANPGNALL 159 (347)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc-cchhhHHHHHhhCcchhhh
Confidence 4566677899999999764321 2 24444333 35543 2211123455566776655
No 142
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=48.44 E-value=8.9 Score=41.16 Aligned_cols=26 Identities=38% Similarity=0.487 Sum_probs=19.3
Q ss_pred EeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 275 ILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 275 Ilgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
-+|+..|.| +.--.|+|||||.||-.
T Consensus 150 ~~g~~~p~g----vLL~GppGtGKT~laka 175 (364)
T TIGR01242 150 EVGIEPPKG----VLLYGPPGTGKTLLAKA 175 (364)
T ss_pred hcCCCCCce----EEEECCCCCCHHHHHHH
Confidence 356777777 34448999999999864
No 143
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=48.29 E-value=16 Score=37.38 Aligned_cols=21 Identities=24% Similarity=0.232 Sum_probs=16.4
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|+-+
T Consensus 36 ~Ge~~~i~--G~nGsGKSTLl~~ 56 (265)
T PRK10575 36 AGKVTGLI--GHNGSGKSTLLKM 56 (265)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 57666665 8999999999754
No 144
>PRK06620 hypothetical protein; Validated
Probab=48.29 E-value=11 Score=37.89 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=17.9
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|..+..|+. .|+|||||.|+.+
T Consensus 41 ~~~~~~l~l~--Gp~G~GKThLl~a 63 (214)
T PRK06620 41 NPYKFTLLIK--GPSSSGKTYLTKI 63 (214)
T ss_pred CCCcceEEEE--CCCCCCHHHHHHH
Confidence 4433567888 7999999999875
No 145
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=48.21 E-value=11 Score=38.17 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|...-|+ .|+|||||.||+
T Consensus 19 ~~gs~~lI~--G~pGsGKT~la~ 39 (237)
T TIGR03877 19 PERNVVLLS--GGPGTGKSIFSQ 39 (237)
T ss_pred cCCeEEEEE--cCCCCCHHHHHH
Confidence 457676666 699999999997
No 146
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=48.07 E-value=12 Score=36.85 Aligned_cols=24 Identities=29% Similarity=0.427 Sum_probs=18.2
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=+.|+..-+. .|||||||+|..+
T Consensus 25 ~i~~G~~~~i~--G~nGsGKSTLl~~ 48 (229)
T cd03254 25 SIKPGETVAIV--GPTGAGKTTLINL 48 (229)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 33568776555 8999999999764
No 147
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=47.85 E-value=13 Score=33.38 Aligned_cols=21 Identities=24% Similarity=0.385 Sum_probs=16.6
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-|. .|+|||||+|.-
T Consensus 9 ~~g~~~~i~--G~nGsGKStLl~ 29 (137)
T PF00005_consen 9 KPGEIVAIV--GPNGSGKSTLLK 29 (137)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred cCCCEEEEE--ccCCCcccccee
Confidence 457777777 799999999854
No 148
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=47.84 E-value=8.1 Score=38.19 Aligned_cols=28 Identities=29% Similarity=0.428 Sum_probs=20.8
Q ss_pred hhhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 262 ALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 262 ALRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|.+..-++||++|+|-| |+|||||+..
T Consensus 15 ~l~~~~l~~~H~~I~G~T---------------GsGKS~~~~~ 42 (229)
T PF01935_consen 15 YLDLNKLFNRHIAIFGTT---------------GSGKSNTVKV 42 (229)
T ss_pred EeeHHHhccceEEEECCC---------------CCCHHHHHHH
Confidence 455555667899999865 5799999764
No 149
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=47.80 E-value=13 Score=37.04 Aligned_cols=22 Identities=32% Similarity=0.628 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+...+. .|||||||+|+-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (242)
T PRK11124 26 PQGETLVLL--GPSGAGKSSLLRV 47 (242)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358776666 8999999999754
No 150
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=47.61 E-value=14 Score=35.47 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=15.9
Q ss_pred CCCCcEEEEEEEcCCcccchhhc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlA 302 (652)
=.+|+..-+. .|||||||+|.
T Consensus 15 i~~Ge~~~i~--G~nGsGKSTLl 35 (190)
T TIGR01166 15 AERGEVLALL--GANGAGKSTLL 35 (190)
T ss_pred EcCCCEEEEE--CCCCCCHHHHH
Confidence 3457765555 89999999985
No 151
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=47.38 E-value=12 Score=37.17 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=11.2
Q ss_pred EEEcCCcccchhhc
Q psy17657 289 AAAFPSACGKTNLA 302 (652)
Q Consensus 289 aaAFPSaCGKTnlA 302 (652)
+--.|+|||||||.
T Consensus 27 ~i~GpNGsGKStll 40 (243)
T cd03272 27 VVVGRNGSGKSNFF 40 (243)
T ss_pred EEECCCCCCHHHHH
Confidence 34489999999994
No 152
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=47.27 E-value=13 Score=36.28 Aligned_cols=22 Identities=23% Similarity=0.297 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|+.+
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~~ 45 (210)
T cd03269 24 EKGEIFGLL--GPNGAGKTTTIRM 45 (210)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 358776666 8999999999764
No 153
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=47.00 E-value=12 Score=38.28 Aligned_cols=20 Identities=20% Similarity=0.193 Sum_probs=14.8
Q ss_pred EEEEEEEcCCcccchhhccc
Q psy17657 285 KMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl 304 (652)
...+.-..|+|||||++|-+
T Consensus 42 ~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred cceEEEEcCCCCCHHHHHHH
Confidence 34444457999999999954
No 154
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=46.98 E-value=9.7 Score=40.79 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=13.2
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
|+-|.+||||||++|-
T Consensus 2 IgItG~SGSGKTTv~~ 17 (277)
T cd02029 2 IAVTGSSGAGTTTVKR 17 (277)
T ss_pred EEEECCCCCCHHHHHH
Confidence 4556899999999976
No 155
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=46.90 E-value=9.5 Score=42.58 Aligned_cols=54 Identities=26% Similarity=0.367 Sum_probs=37.3
Q ss_pred eEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC-CCCceEEEeecceEEEEeCCCccE
Q psy17657 274 RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT-LYDWKVECVGDDIAWMKFDEEGNL 331 (652)
Q Consensus 274 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~-~pGwkve~VGDDIAWmr~~~dGrl 331 (652)
-=|||..|+|...| .|.|+|||-||=.... ..-==+++||.++...-+|+--||
T Consensus 178 ~~~GI~PPKGVLLY----GPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRl 232 (406)
T COG1222 178 EELGIDPPKGVLLY----GPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARL 232 (406)
T ss_pred HHcCCCCCCceEee----CCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHH
Confidence 44799999999999 8999999988754322 111225778888876655643343
No 156
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=46.90 E-value=14 Score=38.79 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=21.8
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+-|+=|.|+.+=|+ .+||||||+|+.
T Consensus 14 v~~~ip~g~~~~vt--GvSGsGKStL~~ 39 (261)
T cd03271 14 IDVDIPLGVLTCVT--GVSGSGKSSLIN 39 (261)
T ss_pred ceeeccCCcEEEEE--CCCCCchHHHHH
Confidence 44667999988887 899999999986
No 157
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=46.88 E-value=17 Score=39.72 Aligned_cols=24 Identities=17% Similarity=0.225 Sum_probs=18.4
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=+.|+..-+. .|||||||+|.-+
T Consensus 15 ~i~~Gei~~l~--G~sGsGKSTLLr~ 38 (363)
T TIGR01186 15 AIAKGEIFVIM--GLSGSGKSTTVRM 38 (363)
T ss_pred EEcCCCEEEEE--CCCCChHHHHHHH
Confidence 33568777776 8999999998653
No 158
>KOG0730|consensus
Probab=46.87 E-value=8.9 Score=45.41 Aligned_cols=57 Identities=26% Similarity=0.349 Sum_probs=35.9
Q ss_pred CCeEEEecCCCccccccccchhhhhhhhcccc-c---eeEeeeeCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 240 TMEIASYGSGYGGNSLLGKKCFALRINQVKEP-N---NRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 240 ~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-H---MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
.+--| +-|||+-=| |+ -|.-+....- | ..=+|++-|+|...| .|.|||||.+|=...
T Consensus 429 p~v~W---~dIGGlE~l-K~--elq~~V~~p~~~pe~F~r~Gi~ppkGVLly----GPPGC~KT~lAkalA 489 (693)
T KOG0730|consen 429 PNVSW---DDIGGLEEL-KR--ELQQAVEWPLKHPEKFARFGISPPKGVLLY----GPPGCGKTLLAKALA 489 (693)
T ss_pred CCCCh---hhccCHHHH-HH--HHHHHHhhhhhchHHHHHhcCCCCceEEEE----CCCCcchHHHHHHHh
Confidence 34445 567777643 22 3433333322 2 244689999997777 899999999986533
No 159
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=46.69 E-value=11 Score=38.26 Aligned_cols=15 Identities=27% Similarity=0.239 Sum_probs=11.8
Q ss_pred EEEEcCCcccchhhc
Q psy17657 288 VAAAFPSACGKTNLA 302 (652)
Q Consensus 288 vaaAFPSaCGKTnlA 302 (652)
.+--.|||||||||.
T Consensus 28 ~~IvG~NGsGKStll 42 (251)
T cd03273 28 NAITGLNGSGKSNIL 42 (251)
T ss_pred EEEECCCCCCHHHHH
Confidence 344489999999994
No 160
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=46.61 E-value=15 Score=36.66 Aligned_cols=22 Identities=36% Similarity=0.439 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 33 ~~Ge~~~l~--G~nGsGKSTLl~~ 54 (233)
T PRK11629 33 GEGEMMAIV--GSSGSGKSTLLHL 54 (233)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468776666 8999999999753
No 161
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.60 E-value=13 Score=36.50 Aligned_cols=22 Identities=36% Similarity=0.623 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 28 ~~G~~~~i~--G~nGsGKSTLl~~ 49 (220)
T cd03293 28 EEGEFVALV--GPSGCGKSTLLRI 49 (220)
T ss_pred eCCcEEEEE--CCCCCCHHHHHHH
Confidence 458776666 8999999999764
No 162
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=46.57 E-value=14 Score=36.67 Aligned_cols=22 Identities=32% Similarity=0.614 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|. .|||||||+|.-+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~ 52 (225)
T PRK10247 31 RAGEFKLIT--GPSGCGKSTLLKI 52 (225)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777777 8999999998643
No 163
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=46.52 E-value=12 Score=35.65 Aligned_cols=29 Identities=34% Similarity=0.472 Sum_probs=19.6
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
-.+|=|+-. .|....|+ .||++|||.+++
T Consensus 22 ~~li~g~~~-~g~l~~i~--g~~g~GKT~~~~ 50 (193)
T PF13481_consen 22 DWLIDGLLP-RGELTLIA--GPPGSGKTTLAL 50 (193)
T ss_dssp -EEETTEE--TTSEEEEE--ECSTSSHHHHHH
T ss_pred ceeECCccc-CCeEEEEE--eCCCCCHHHHHH
Confidence 444444433 57777777 689999999876
No 164
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=46.44 E-value=15 Score=35.75 Aligned_cols=22 Identities=36% Similarity=0.579 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 25 ~~G~~~~i~--G~nGsGKSTLl~~ 46 (214)
T cd03292 25 SAGEFVFLV--GPSGAGKSTLLKL 46 (214)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999998753
No 165
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=46.34 E-value=13 Score=35.64 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.+|+..-+. .|||||||+|.-+
T Consensus 23 ~~G~~~~l~--G~nGsGKStLl~~ 44 (180)
T cd03214 23 EAGEIVGIL--GPNGAGKSTLLKT 44 (180)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 358777777 8999999998654
No 166
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=46.16 E-value=15 Score=35.94 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 28 ~~G~~~~i~--G~nGsGKSTLl~~ 49 (220)
T cd03245 28 RAGEKVAII--GRVGSGKSTLLKL 49 (220)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777776 8999999999643
No 167
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=46.11 E-value=15 Score=35.75 Aligned_cols=21 Identities=24% Similarity=0.216 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-|. .|||||||+|.-
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~ 44 (208)
T cd03268 24 KKGEIYGFL--GPNGAGKTTTMK 44 (208)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 457777666 899999999964
No 168
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.03 E-value=13 Score=36.50 Aligned_cols=21 Identities=19% Similarity=0.211 Sum_probs=15.6
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|+=
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~ 51 (202)
T cd03233 31 KPGEMVLVL--GRPGSGCSTLLK 51 (202)
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 357655555 899999999863
No 169
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=45.97 E-value=11 Score=36.92 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=18.6
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCce
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWK 312 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwk 312 (652)
+|.++|||+ ++|||||+++-+.-. -|..
T Consensus 1 ~~~~i~ltG------------~~gsGKst~~~~l~~-~g~~ 28 (194)
T PRK00081 1 MMLIIGLTG------------GIGSGKSTVANLFAE-LGAP 28 (194)
T ss_pred CCeEEEEEC------------CCCCCHHHHHHHHHH-cCCE
Confidence 366667765 578999998865443 3553
No 170
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=45.83 E-value=13 Score=36.42 Aligned_cols=21 Identities=29% Similarity=0.490 Sum_probs=16.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++|+..=+. .|||||||+|.=
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~ 46 (207)
T PRK13539 26 AAGEALVLT--GPNGSGKTTLLR 46 (207)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 357766666 899999999864
No 171
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=45.76 E-value=10 Score=37.54 Aligned_cols=36 Identities=22% Similarity=0.366 Sum_probs=25.3
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecc
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDD 319 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDD 319 (652)
|-|+.|.|++| |||||++|+...- ..|.||=.|-=|
T Consensus 1 m~iI~v~s~KG-----------GvGKTt~a~nla~~la~~g~~VlliD~D 39 (246)
T TIGR03371 1 MKVIAIVGVKG-----------GVGKTTLTANLASALKLLGEPVLAIDLD 39 (246)
T ss_pred CcEEEEEeCCC-----------CccHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 56778888777 8999999884332 257777666544
No 172
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=45.59 E-value=11 Score=33.81 Aligned_cols=17 Identities=35% Similarity=0.532 Sum_probs=12.9
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-+-|+|||||++|-.
T Consensus 2 I~i~G~~GsGKst~a~~ 18 (147)
T cd02020 2 IAIDGPAGSGKSTVAKL 18 (147)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 45567889999988874
No 173
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.44 E-value=16 Score=34.97 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=18.1
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=+.|+..-+. .|||||||+|+-
T Consensus 21 ~~i~~G~~~~i~--G~nGsGKSTLl~ 44 (178)
T cd03229 21 LNIEAGEIVALL--GPSGSGKSTLLR 44 (178)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 343568777676 799999999864
No 174
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=45.37 E-value=13 Score=36.49 Aligned_cols=22 Identities=27% Similarity=0.311 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|..+
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~ 50 (228)
T cd03257 29 KKGETLGLV--GESGSGKSTLARA 50 (228)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999999764
No 175
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=45.36 E-value=16 Score=38.66 Aligned_cols=33 Identities=24% Similarity=0.298 Sum_probs=26.6
Q ss_pred CCCCcEEEEEEEcCCcccchhhcccCCCCCCceEE
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVE 314 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve 314 (652)
=..|+.+=+- .|.|+||++||...--.|+|+|+
T Consensus 27 v~~GEvhaiM--GPNGsGKSTLa~~i~G~p~Y~Vt 59 (251)
T COG0396 27 VKEGEVHAIM--GPNGSGKSTLAYTIMGHPKYEVT 59 (251)
T ss_pred EcCCcEEEEE--CCCCCCHHHHHHHHhCCCCceEe
Confidence 3468877766 89999999999987777898664
No 176
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=45.32 E-value=10 Score=40.75 Aligned_cols=37 Identities=19% Similarity=0.054 Sum_probs=26.3
Q ss_pred CCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
+|+..-+. .|+|+|||+++...-. ..|.+|-.++-|+
T Consensus 113 ~~~vi~lv--GpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~ 152 (318)
T PRK10416 113 KPFVILVV--GVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDT 152 (318)
T ss_pred CCeEEEEE--CCCCCcHHHHHHHHHHHHHhcCCeEEEEecCc
Confidence 45555555 5999999987653221 2589999999887
No 177
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=45.23 E-value=14 Score=36.07 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|..+
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~ 50 (218)
T cd03266 29 KPGEVTGLL--GPNGAGKTTTLRM 50 (218)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 457766565 8999999999765
No 178
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=44.98 E-value=13 Score=41.88 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=19.5
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=+.|++.-|. .|||||||+|+.+
T Consensus 362 ~i~~Ge~i~Iv--G~sGsGKSTLlkl 385 (576)
T TIGR02204 362 TVRPGETVALV--GPSGAGKSTLFQL 385 (576)
T ss_pred EecCCCEEEEE--CCCCCCHHHHHHH
Confidence 33568888887 8999999999875
No 179
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=44.89 E-value=16 Score=35.96 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|. .|||||||+|+-+
T Consensus 38 ~~Ge~~~i~--G~nGsGKSTLl~~ 59 (226)
T cd03248 38 HPGEVTALV--GPSGSGKSTVVAL 59 (226)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468887777 8999999998653
No 180
>PRK04328 hypothetical protein; Provisional
Probab=44.71 E-value=13 Score=38.10 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.1
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|..+.|+ .|+|||||.||+
T Consensus 21 p~gs~ili~--G~pGsGKT~l~~ 41 (249)
T PRK04328 21 PERNVVLLS--GGPGTGKSIFSQ 41 (249)
T ss_pred cCCcEEEEE--cCCCCCHHHHHH
Confidence 668888887 599999999987
No 181
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.64 E-value=17 Score=34.69 Aligned_cols=22 Identities=27% Similarity=0.354 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|. .|||||||+|.-+
T Consensus 24 ~~Ge~~~i~--G~nGsGKStLl~~ 45 (173)
T cd03230 24 EKGEIYGLL--GPNGAGKTTLIKI 45 (173)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999998654
No 182
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=44.61 E-value=16 Score=39.64 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=22.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDI 320 (652)
..|+..-+. .|||||||+|.=+ .++..| +|.+=|.||
T Consensus 30 ~~Ge~~~ll--GpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i 70 (351)
T PRK11432 30 KQGTMVTLL--GPSGCGKTTVLRLVAGLEKPTEG-QIFIDGEDV 70 (351)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHHHHCCCCCCce-EEEECCEEC
Confidence 457654444 8999999998532 344456 344444444
No 183
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=44.37 E-value=15 Score=40.21 Aligned_cols=22 Identities=36% Similarity=0.576 Sum_probs=16.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 38 ~~Ge~~~Ll--GpsGsGKSTLLr~ 59 (375)
T PRK09452 38 NNGEFLTLL--GPSGCGKTTVLRL 59 (375)
T ss_pred eCCCEEEEE--CCCCCcHHHHHHH
Confidence 357655555 7999999998543
No 184
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.33 E-value=17 Score=35.59 Aligned_cols=21 Identities=38% Similarity=0.558 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++|+..-+. .|||||||+|+-
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~ 44 (213)
T cd03259 24 EPGEFLALL--GPSGCGKTTLLR 44 (213)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468777666 899999999864
No 185
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=44.26 E-value=17 Score=36.38 Aligned_cols=22 Identities=41% Similarity=0.554 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (239)
T cd03296 26 PSGELVALL--GPSGSGKTTLLRL 47 (239)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777776 8999999998754
No 186
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=44.25 E-value=15 Score=36.07 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|+.+.+.+.-|.|+|||||.++..
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~ 34 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQ 34 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHH
T ss_pred cccCCEEEEEeCCCCCCHHHHHHH
Confidence 556777888889999999999864
No 187
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=44.21 E-value=17 Score=36.01 Aligned_cols=22 Identities=32% Similarity=0.363 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.+|+..-+. .|||||||+|+-+
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~ 45 (230)
T TIGR03410 24 PKGEVTCVL--GRNGVGKTTLLKT 45 (230)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 358777777 8999999999654
No 188
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=44.13 E-value=33 Score=31.32 Aligned_cols=40 Identities=28% Similarity=0.522 Sum_probs=34.6
Q ss_pred cCCcCCCCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc
Q psy17657 31 HGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRV 83 (652)
Q Consensus 31 ~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L 83 (652)
+-+|+--||.|++|++. || ++||.-.|++.|+++|++.+=
T Consensus 27 ~~~~~gy~PtV~D~L~r------------Cd-T~EEAlEii~yleKrGEi~~E 66 (98)
T COG4003 27 KIDFSGYNPTVIDFLRR------------CD-TEEEALEIINYLEKRGEITPE 66 (98)
T ss_pred cCCcCCCCchHHHHHHH------------hC-cHHHHHHHHHHHHHhCCCCHH
Confidence 46788899999999875 55 899999999999999999874
No 189
>PRK06217 hypothetical protein; Validated
Probab=44.09 E-value=12 Score=36.16 Aligned_cols=17 Identities=24% Similarity=0.243 Sum_probs=13.1
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|.-..+||||||++|=.
T Consensus 4 I~i~G~~GsGKSTla~~ 20 (183)
T PRK06217 4 IHITGASGSGTTTLGAA 20 (183)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44457899999999853
No 190
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=44.07 E-value=13 Score=40.67 Aligned_cols=22 Identities=23% Similarity=-0.079 Sum_probs=18.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|..+-|+ .|+|||||.|+|.
T Consensus 124 ~~G~ItEI~--G~~GsGKTql~lq 145 (344)
T PLN03187 124 ETRCITEAF--GEFRSGKTQLAHT 145 (344)
T ss_pred CCCeEEEEe--cCCCCChhHHHHH
Confidence 568888888 7999999999973
No 191
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=44.00 E-value=14 Score=36.35 Aligned_cols=21 Identities=29% Similarity=0.369 Sum_probs=15.9
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++|+..-+. .|||||||+|.=
T Consensus 23 ~~Ge~~~l~--G~nGsGKSTLl~ 43 (177)
T cd03222 23 KEGEVIGIV--GPNGTGKTTAVK 43 (177)
T ss_pred CCCCEEEEE--CCCCChHHHHHH
Confidence 457766555 899999999753
No 192
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=43.89 E-value=17 Score=35.43 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 24 ~~G~~~~l~--G~nGsGKSTLl~~ 45 (213)
T cd03262 24 KKGEVVVII--GPSGSGKSTLLRC 45 (213)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999998654
No 193
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=43.84 E-value=11 Score=37.38 Aligned_cols=28 Identities=36% Similarity=0.365 Sum_probs=17.7
Q ss_pred EEEEEEcCCcccchhhcc-cCCCC--CCceE
Q psy17657 286 MFVAAAFPSACGKTNLAM-LMPTL--YDWKV 313 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAM-l~p~~--pGwkv 313 (652)
.-++-+.||+||||+|+- |.+-+ .|++|
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~~l~~~g~~v 37 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIPALCARGIRP 37 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHhhcCCeE
Confidence 345666799999999743 22333 36654
No 194
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=43.73 E-value=17 Score=35.43 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|+-+
T Consensus 26 ~~G~~~~l~--G~nGsGKSTLl~~ 47 (214)
T TIGR02673 26 RKGEFLFLT--GPSGAGKTTLLKL 47 (214)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 357766666 8999999999764
No 195
>KOG0733|consensus
Probab=43.65 E-value=11 Score=44.73 Aligned_cols=29 Identities=38% Similarity=0.678 Sum_probs=22.1
Q ss_pred eEeeeeCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 274 RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 274 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
.=+||.-|.|-.. ..|.|||||-||=...
T Consensus 538 k~lGi~~PsGvLL----~GPPGCGKTLlAKAVA 566 (802)
T KOG0733|consen 538 KALGIDAPSGVLL----CGPPGCGKTLLAKAVA 566 (802)
T ss_pred HHhCCCCCCceEE----eCCCCccHHHHHHHHh
Confidence 3468999999544 3899999999886533
No 196
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=43.62 E-value=17 Score=36.10 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~ 45 (236)
T cd03219 24 RPGEIHGLI--GPNGAGKTTLFNL 45 (236)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 357765555 8999999999754
No 197
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=43.59 E-value=17 Score=36.09 Aligned_cols=22 Identities=23% Similarity=0.214 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++|+..-+. .|||||||+|.=+
T Consensus 11 ~~Ge~~~l~--G~NGsGKSTLlk~ 32 (213)
T PRK15177 11 GYHEHIGIL--AAPGSGKTTLTRL 32 (213)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 467666666 8999999998643
No 198
>KOG0727|consensus
Probab=43.59 E-value=11 Score=40.59 Aligned_cols=82 Identities=26% Similarity=0.366 Sum_probs=52.5
Q ss_pred ceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-ce---eEeeeeCCCCcEEEEEEEcCCcccchhhcccC-
Q psy17657 231 RTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-NN---RILGVTNPEGKKMFVAAAFPSACGKTNLAMLM- 305 (652)
Q Consensus 231 k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-HM---lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~- 305 (652)
-.+-+.-|+++-=.||+-= ||=-+ .|- -+|=|.-+-- |. --+||-.|.|...| .|.|||||-||=..
T Consensus 139 ssi~ml~~~ekpdvsy~di-ggld~--qkq-eireavelplt~~~ly~qigidpprgvlly----gppg~gktml~kava 210 (408)
T KOG0727|consen 139 SSISMLGPDEKPDVSYADI-GGLDV--QKQ-EIREAVELPLTHADLYKQIGIDPPRGVLLY----GPPGTGKTMLAKAVA 210 (408)
T ss_pred ccccccCCCCCCCcccccc-ccchh--hHH-HHHHHHhccchHHHHHHHhCCCCCcceEEe----CCCCCcHHHHHHHHh
Confidence 3566677888877888653 66554 333 5677665554 43 34789999998888 79999999775422
Q ss_pred -CCCCCceEEEeecceE
Q psy17657 306 -PTLYDWKVECVGDDIA 321 (652)
Q Consensus 306 -p~~pGwkve~VGDDIA 321 (652)
.|..- -+++||.+..
T Consensus 211 ~~t~a~-firvvgsefv 226 (408)
T KOG0727|consen 211 NHTTAA-FIRVVGSEFV 226 (408)
T ss_pred hccchh-eeeeccHHHH
Confidence 22222 2455565543
No 199
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=43.57 E-value=12 Score=33.85 Aligned_cols=14 Identities=43% Similarity=0.420 Sum_probs=11.7
Q ss_pred EcCCcccchhhccc
Q psy17657 291 AFPSACGKTNLAML 304 (652)
Q Consensus 291 AFPSaCGKTnlAMl 304 (652)
-.|+|||||.||-.
T Consensus 5 ~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 5 VGPPGTGKTTLARE 18 (139)
T ss_dssp EESSSSSHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 46999999999863
No 200
>PRK05973 replicative DNA helicase; Provisional
Probab=43.50 E-value=14 Score=38.47 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|..+-|+ .++|+|||.|||-
T Consensus 62 ~~Gsl~LIa--G~PG~GKT~lalq 83 (237)
T PRK05973 62 KPGDLVLLG--ARPGHGKTLLGLE 83 (237)
T ss_pred CCCCEEEEE--eCCCCCHHHHHHH
Confidence 557777666 6899999999984
No 201
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=43.08 E-value=18 Score=36.58 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=16.6
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhh
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNL 301 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnl 301 (652)
..|=-+|+.--+- .||||||++|
T Consensus 22 n~Tia~GeivtlM--GPSGcGKSTL 44 (213)
T COG4136 22 NFTIAKGEIVTLM--GPSGCGKSTL 44 (213)
T ss_pred eEEecCCcEEEEE--CCCCccHHHH
Confidence 3455568765555 8999999886
No 202
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=43.08 E-value=12 Score=43.11 Aligned_cols=60 Identities=15% Similarity=0.376 Sum_probs=34.1
Q ss_pred EEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEE-EeCCCCceeeecCCCCCCCCHHHHhhccCC
Q psy17657 286 MFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLR-AINPESGFFGVAPGTSCNTNPQAMQTIFHN 362 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~-AINPE~GfFGVapGtn~~tnP~am~~l~kn 362 (652)
.-|+-..|||||||++|-+.- ..+.+..++. |.+| ++ .++-...|.+ .++|.+...+.++
T Consensus 285 ~ii~i~G~sgsGKst~a~~la-----------~~l~~~~~d~-g~~YR~~----a~~~l~~~~~-~~~~~~l~~l~~~ 345 (512)
T PRK13477 285 PIIAIDGPAGAGKSTVTRAVA-----------KKLGLLYLDT-GAMYRAV----TWLVLQEGID-PQDEEALAELLSD 345 (512)
T ss_pred cEEEEECCCCCCHHHHHHHHH-----------HHcCCeEecC-CceehHH----HHHHHHcCcC-CcCHHHHHHHHhc
Confidence 457778999999999987543 1112444443 4444 32 2222233434 4677777665544
No 203
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.07 E-value=17 Score=35.98 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~~ 50 (233)
T cd03258 29 PKGEIFGII--GRSGAGKSTLIRC 50 (233)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777777 8999999999754
No 204
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=43.04 E-value=14 Score=37.53 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=21.6
Q ss_pred HHHHHHHHhhcCCccceeeCccccCcCCCCCCCccCCCC
Q psy17657 543 RVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINLTDLY 581 (652)
Q Consensus 543 RVL~WI~~R~~G~~~~a~eTPiG~iP~~~~~~ldl~gL~ 581 (652)
.+++||.+|=.-+ ..-...|.+.-+.+ =-||.+.|.
T Consensus 170 ~~~~~i~~RD~~D-~~R~~~~~~~a~~~--i~Idts~l~ 205 (217)
T TIGR00017 170 ELLAEIKERDDRD-SNREVAPLKKADDA--LYLDTSNLS 205 (217)
T ss_pred HHHHHHHHHHhcc-cccccCcccCCCCe--EEEECCCCC
Confidence 6799999883222 11122676665555 557777775
No 205
>PRK14737 gmk guanylate kinase; Provisional
Probab=43.00 E-value=15 Score=36.24 Aligned_cols=17 Identities=12% Similarity=0.178 Sum_probs=13.0
Q ss_pred EEEEEEcCCcccchhhc
Q psy17657 286 MFVAAAFPSACGKTNLA 302 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlA 302 (652)
+.|.-..|||||||+|+
T Consensus 5 ~~ivl~GpsG~GK~tl~ 21 (186)
T PRK14737 5 KLFIISSVAGGGKSTII 21 (186)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34555589999999985
No 206
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=42.93 E-value=12 Score=39.61 Aligned_cols=56 Identities=16% Similarity=0.189 Sum_probs=38.7
Q ss_pred ccccccccchhhhhh--hhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCC
Q psy17657 251 GGNSLLGKKCFALRI--NQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEE 328 (652)
Q Consensus 251 GGNaLLGKKcfALRi--AS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~d 328 (652)
.+..++|+.+...++ |...++|-|+.| |.|||||.||...- +.+|-+...+.+.+|
T Consensus 22 ~~~~~~g~~~~~~~~l~a~~~~~~vll~G---------------~PG~gKT~la~~lA-------~~l~~~~~~i~~t~~ 79 (329)
T COG0714 22 LEKVVVGDEEVIELALLALLAGGHVLLEG---------------PPGVGKTLLARALA-------RALGLPFVRIQCTPD 79 (329)
T ss_pred cCCeeeccHHHHHHHHHHHHcCCCEEEEC---------------CCCccHHHHHHHHH-------HHhCCCeEEEecCCC
Confidence 334466688876665 555666988774 56799999999766 556656666666544
No 207
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=42.73 E-value=15 Score=41.62 Aligned_cols=26 Identities=35% Similarity=0.528 Sum_probs=20.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|++.-|. .|||||||+|+-+.
T Consensus 371 l~i~~G~~vaIv--G~SGsGKSTL~~lL 396 (588)
T PRK11174 371 FTLPAGQRIALV--GPSGAGKTSLLNAL 396 (588)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 344679888777 89999999998764
No 208
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=42.69 E-value=12 Score=41.59 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=18.1
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|+..|.|- .-..|+|||||.||-.
T Consensus 174 ~Gl~~pkgv----LL~GppGTGKT~LAka 198 (398)
T PTZ00454 174 IGIDPPRGV----LLYGPPGTGKTMLAKA 198 (398)
T ss_pred cCCCCCceE----EEECCCCCCHHHHHHH
Confidence 466677663 2338999999999864
No 209
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.65 E-value=18 Score=36.45 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+.+-|. .|||||||+|+=+
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~~ 51 (253)
T PRK14261 30 PKNRVTALI--GPSGCGKSTLLRC 51 (253)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 468877666 8999999999754
No 210
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=42.50 E-value=13 Score=40.84 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=20.2
Q ss_pred eEeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 274 RILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 274 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.-+|+..|.|-.. -.|+|||||.||-.
T Consensus 158 ~~~g~~~p~gvLL----~GppGtGKT~lAka 184 (389)
T PRK03992 158 EEVGIEPPKGVLL----YGPPGTGKTLLAKA 184 (389)
T ss_pred HhcCCCCCCceEE----ECCCCCChHHHHHH
Confidence 4567888877333 38999999999754
No 211
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=42.49 E-value=16 Score=36.74 Aligned_cols=38 Identities=21% Similarity=0.437 Sum_probs=24.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC----CCCCCceEEEeecceE
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM----PTLYDWKVECVGDDIA 321 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~----p~~pGwkve~VGDDIA 321 (652)
..|+..-+. .|||||||+|.-+. ++..| +|..=|.+|.
T Consensus 24 ~~Ge~~~i~--G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~ 65 (252)
T TIGR03005 24 AAGEKVALI--GPSGSGKSTILRILMTLEPIDEG-QIQVEGEQLY 65 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcc
Confidence 458877776 89999999997543 22334 3444444444
No 212
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=42.42 E-value=14 Score=39.57 Aligned_cols=22 Identities=27% Similarity=0.134 Sum_probs=18.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|..+=|+ .|+|||||.|+|.
T Consensus 94 ~~G~iteI~--G~~GsGKTql~lq 115 (313)
T TIGR02238 94 ESMSITEVF--GEFRCGKTQLSHT 115 (313)
T ss_pred cCCeEEEEE--CCCCCCcCHHHHH
Confidence 568888888 6999999999974
No 213
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=42.32 E-value=11 Score=42.34 Aligned_cols=26 Identities=35% Similarity=0.531 Sum_probs=19.1
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+|+..|.|-.. -.|+|||||.||-..
T Consensus 212 ~gi~~p~gVLL----~GPPGTGKT~LAraI 237 (438)
T PTZ00361 212 IGIKPPKGVIL----YGPPGTGKTLLAKAV 237 (438)
T ss_pred cCCCCCcEEEE----ECCCCCCHHHHHHHH
Confidence 56777777333 389999999998643
No 214
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=42.29 E-value=12 Score=35.10 Aligned_cols=14 Identities=29% Similarity=0.323 Sum_probs=12.1
Q ss_pred EEcCCcccchhhcc
Q psy17657 290 AAFPSACGKTNLAM 303 (652)
Q Consensus 290 aAFPSaCGKTnlAM 303 (652)
-+.|+|||||.||+
T Consensus 4 i~G~~G~GKT~l~~ 17 (187)
T cd01124 4 LSGGPGTGKTTFAL 17 (187)
T ss_pred EEcCCCCCHHHHHH
Confidence 35799999999987
No 215
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=42.02 E-value=19 Score=37.12 Aligned_cols=22 Identities=41% Similarity=0.609 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 36 ~~Ge~~~I~--G~NGsGKSTLlk~ 57 (257)
T PRK11247 36 PAGQFVAVV--GRSGCGKSTLLRL 57 (257)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358777666 8999999999643
No 216
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=41.93 E-value=18 Score=39.26 Aligned_cols=38 Identities=21% Similarity=0.305 Sum_probs=22.4
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecce
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDI 320 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDI 320 (652)
=+.|+.. +--.|||||||+|.-+ .++..| +|.+=|.||
T Consensus 27 i~~Ge~~--~llG~sGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i 68 (356)
T PRK11650 27 VADGEFI--VLVGPSGCGKSTLLRMVAGLERITSG-EIWIGGRVV 68 (356)
T ss_pred EcCCCEE--EEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEEC
Confidence 3457654 4448999999998543 344456 244334333
No 217
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=41.88 E-value=15 Score=39.27 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
..|+..-|. .|||||||+|+.+.
T Consensus 40 ~~Ge~~~iv--G~sGsGKSTL~~~l 62 (330)
T PRK09473 40 RAGETLGIV--GESGSGKSQTAFAL 62 (330)
T ss_pred cCCCEEEEE--CCCCchHHHHHHHH
Confidence 458776666 89999999998643
No 218
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=41.71 E-value=16 Score=41.40 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=18.1
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
=+.|++.=|. .|||||||+|+=+
T Consensus 366 i~~G~~~aIv--G~sGsGKSTLl~l 388 (582)
T PRK11176 366 IPAGKTVALV--GRSGSGKSTIANL 388 (582)
T ss_pred eCCCCEEEEE--CCCCCCHHHHHHH
Confidence 3568886666 8999999999754
No 219
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=41.71 E-value=15 Score=36.69 Aligned_cols=22 Identities=18% Similarity=0.202 Sum_probs=18.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|....|+ .|+|||||.||..
T Consensus 23 ~~g~~~~i~--G~~GsGKt~l~~~ 44 (234)
T PRK06067 23 PFPSLILIE--GDHGTGKSVLSQQ 44 (234)
T ss_pred cCCcEEEEE--CCCCCChHHHHHH
Confidence 678888887 5999999999874
No 220
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=41.68 E-value=19 Score=38.19 Aligned_cols=58 Identities=16% Similarity=0.158 Sum_probs=41.3
Q ss_pred eecCCcccCCCCCCChHHHHHHHHccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHH
Q psy17657 483 ILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQ 550 (652)
Q Consensus 483 v~~DPmAMlpF~gyn~gdY~~hWL~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~ 550 (652)
+.-.-+|.++|---+=|+--.-|+.+.= .+-|+|-- -||==.+| =+...++||+=|.+
T Consensus 126 ~~~~~la~r~~~~LSGGerQrv~iArAL---aQ~~~iLL-----LDEPTs~L--Di~~Q~evl~ll~~ 183 (258)
T COG1120 126 LGLEHLADRPVDELSGGERQRVLIARAL---AQETPILL-----LDEPTSHL--DIAHQIEVLELLRD 183 (258)
T ss_pred hCcHHHhcCcccccChhHHHHHHHHHHH---hcCCCEEE-----eCCCcccc--CHHHHHHHHHHHHH
Confidence 3446788888888888998888888643 24466654 47766788 44888889887744
No 221
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=41.54 E-value=19 Score=36.72 Aligned_cols=22 Identities=45% Similarity=0.674 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~ 46 (255)
T PRK11248 25 ESGELLVVL--GPSGCGKTTLLNL 46 (255)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999998654
No 222
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=41.42 E-value=18 Score=35.69 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=17.2
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|+..-+. .|||||||+|..+
T Consensus 25 ~Ge~~~i~--G~nGsGKSTLl~~ 45 (220)
T cd03265 25 RGEIFGLL--GPNGAGKTTTIKM 45 (220)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 57777676 8999999999765
No 223
>PRK09087 hypothetical protein; Validated
Probab=41.26 E-value=17 Score=36.94 Aligned_cols=20 Identities=35% Similarity=0.456 Sum_probs=15.8
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+...|+. .|||||||.|+.+
T Consensus 44 ~~~l~l~--G~~GsGKThLl~~ 63 (226)
T PRK09087 44 SPVVVLA--GPVGSGKTHLASI 63 (226)
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 3446776 8999999999874
No 224
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=41.25 E-value=23 Score=35.27 Aligned_cols=18 Identities=11% Similarity=0.277 Sum_probs=13.6
Q ss_pred CcEEEEEEEcCCcccchhhc
Q psy17657 283 GKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlA 302 (652)
|+..-++ .|||||||+|.
T Consensus 25 g~~~~lt--GpNg~GKSTll 42 (199)
T cd03283 25 KNGILIT--GSNMSGKSTFL 42 (199)
T ss_pred CcEEEEE--CCCCCChHHHH
Confidence 5555555 89999999984
No 225
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=41.25 E-value=18 Score=33.83 Aligned_cols=21 Identities=19% Similarity=0.265 Sum_probs=16.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|+=
T Consensus 24 ~~Ge~~~i~--G~nGsGKStLl~ 44 (144)
T cd03221 24 NPGDRIGLV--GRNGAGKSTLLK 44 (144)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 357766666 899999999864
No 226
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=41.22 E-value=15 Score=36.62 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=15.7
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
|.|+|||+ ++|||||+++=+.-
T Consensus 1 m~~igitG------------~igsGKst~~~~l~ 22 (200)
T PRK14734 1 MLRIGLTG------------GIGSGKSTVADLLS 22 (200)
T ss_pred CeEEEEEC------------CCCCCHHHHHHHHH
Confidence 56677765 47899999875443
No 227
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=41.06 E-value=20 Score=35.98 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|+-
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (247)
T TIGR00972 25 PKNQVTALI--GPSGCGKSTLLR 45 (247)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 568877776 899999999864
No 228
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=41.04 E-value=17 Score=42.87 Aligned_cols=18 Identities=33% Similarity=0.615 Sum_probs=15.4
Q ss_pred CCcEEEEEEEcCCcccchhh
Q psy17657 282 EGKKMFVAAAFPSACGKTNL 301 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnl 301 (652)
.|+..+|. .|||||||+|
T Consensus 418 ~G~~llI~--G~SG~GKTsL 435 (604)
T COG4178 418 PGERLLIT--GESGAGKTSL 435 (604)
T ss_pred CCCEEEEE--CCCCCCHHHH
Confidence 57777887 7999999998
No 229
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=40.97 E-value=21 Score=35.38 Aligned_cols=22 Identities=36% Similarity=0.600 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (234)
T cd03251 26 PAGETVALV--GPSGSGKSTLVNL 47 (234)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458777777 8999999999753
No 230
>PRK06893 DNA replication initiation factor; Validated
Probab=40.93 E-value=12 Score=37.62 Aligned_cols=18 Identities=17% Similarity=0.189 Sum_probs=15.1
Q ss_pred EEEEEEEcCCcccchhhccc
Q psy17657 285 KMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+. .|||||||-||..
T Consensus 41 ~l~l~--G~~G~GKThL~~a 58 (229)
T PRK06893 41 FFYIW--GGKSSGKSHLLKA 58 (229)
T ss_pred eEEEE--CCCCCCHHHHHHH
Confidence 46777 7999999999875
No 231
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=40.92 E-value=20 Score=38.70 Aligned_cols=37 Identities=19% Similarity=0.117 Sum_probs=23.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDI 320 (652)
+.|+..-+. .|||||||+|.-+ .++..| +|..=|.|+
T Consensus 22 ~~Ge~~~l~--G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~~ 62 (352)
T PRK11144 22 PAQGITAIF--GRSGAGKTSLINAISGLTRPQKG-RIVLNGRVL 62 (352)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEc
Confidence 467765555 8999999998643 244456 344444443
No 232
>PF11927 DUF3445: Protein of unknown function (DUF3445); InterPro: IPR021848 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 264 to 418 amino acids in length. This protein has a conserved RLP sequence motif. This protein has two completely conserved R residues that may be functionally important.
Probab=40.91 E-value=54 Score=34.33 Aligned_cols=71 Identities=21% Similarity=0.129 Sum_probs=50.7
Q ss_pred EEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-ceeEeeeeCCCCcEEEEEEE---cCCc------ccchhhcc
Q psy17657 234 ILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-NNRILGVTNPEGKKMFVAAA---FPSA------CGKTNLAM 303 (652)
Q Consensus 234 I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-HMlIlgvt~P~G~~~yvaaA---FPSa------CGKTnlAM 303 (652)
+.|+--+++.+.+..+. ...|-.|++++.... -++|| ..++++..+|..|+ |||+ -||+-.++
T Consensus 75 ~~~n~~~ge~~~~~~~~------~~~~~pL~~~~~~vqEDl~il-~~~~~~~~~~L~A~~~cfP~~W~l~~K~G~~l~~I 147 (249)
T PF11927_consen 75 WWHNRLTGETFPLDPPD------SLPLDPLEILGRLVQEDLCIL-LRDEEDGEYRLRAGVVCFPAGWSLSEKIGKPLAAI 147 (249)
T ss_pred eEEeccCCCEEecCCCC------CCchhHHHHHHHhChhcEEEE-eecCCCCcEEEeheeeecCCCCCHHHHcCCcHHHh
Confidence 37778888999887775 345668888887776 88877 44544556666665 9998 68886666
Q ss_pred cCCCCCCce
Q psy17657 304 LMPTLYDWK 312 (652)
Q Consensus 304 l~p~~pGwk 312 (652)
- .+.|||+
T Consensus 148 H-~PVP~y~ 155 (249)
T PF11927_consen 148 H-GPVPGYK 155 (249)
T ss_pred c-CCccchh
Confidence 5 4478876
No 233
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=40.80 E-value=20 Score=35.95 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
..|+..-+. .|||||||+|.-+.
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~l 51 (252)
T PRK14239 29 YPNEITALI--GPSGSGKSTLLRSI 51 (252)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHH
Confidence 358776665 89999999997653
No 234
>PRK00698 tmk thymidylate kinase; Validated
Probab=40.69 E-value=16 Score=34.90 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.9
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
++|+--.|+|||||+++-.
T Consensus 4 ~~I~ieG~~gsGKsT~~~~ 22 (205)
T PRK00698 4 MFITIEGIDGAGKSTQIEL 22 (205)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5777789999999999754
No 235
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=40.67 E-value=16 Score=36.14 Aligned_cols=21 Identities=29% Similarity=0.475 Sum_probs=16.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+.+-|+ .|+|+|||.||+
T Consensus 11 ~~G~l~lI~--G~~G~GKT~~~~ 31 (242)
T cd00984 11 QPGDLIIIA--ARPSMGKTAFAL 31 (242)
T ss_pred CCCeEEEEE--eCCCCCHHHHHH
Confidence 457666665 789999999987
No 236
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=40.48 E-value=16 Score=41.25 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=18.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+=|+ .|+|||||.||+-
T Consensus 19 p~g~~~Li~--G~pGsGKT~la~q 40 (484)
T TIGR02655 19 PIGRSTLVS--GTSGTGKTLFSIQ 40 (484)
T ss_pred CCCeEEEEE--cCCCCCHHHHHHH
Confidence 567777666 8999999999984
No 237
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=40.47 E-value=15 Score=41.27 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=19.7
Q ss_pred CCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
=+.|++.-|. .|||||||+|+.+.
T Consensus 355 i~~G~~v~Iv--G~sGsGKSTLl~lL 378 (571)
T TIGR02203 355 IEPGETVALV--GRSGSGKSTLVNLI 378 (571)
T ss_pred ecCCCEEEEE--CCCCCCHHHHHHHH
Confidence 3568888888 89999999998753
No 238
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=40.27 E-value=15 Score=38.23 Aligned_cols=20 Identities=30% Similarity=0.644 Sum_probs=16.3
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|+|+|||+. .|||||+.+=+
T Consensus 1 M~iIGlTGg------------IgSGKStVs~~ 20 (244)
T PTZ00451 1 MILIGLTGG------------IACGKSTVSRI 20 (244)
T ss_pred CeEEEEECC------------CCCCHHHHHHH
Confidence 889999974 68999988743
No 239
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=40.12 E-value=15 Score=36.40 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=13.4
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
+++--.|||||||||.-+
T Consensus 24 ~~~i~G~nGsGKStll~a 41 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDA 41 (197)
T ss_pred cEEEECCCCCCHHHHHHH
Confidence 444558999999999643
No 240
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=40.12 E-value=21 Score=37.19 Aligned_cols=43 Identities=33% Similarity=0.507 Sum_probs=30.4
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc-----cCCCCCCceEEEeecceEEEE
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM-----LMPTLYDWKVECVGDDIAWMK 324 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM-----l~p~~pGwkve~VGDDIAWmr 324 (652)
+.=|+|+-.|++ .|||+|||+|-= ..|| .| ++.+-|-||.=+|
T Consensus 23 ~~i~~Gef~fl~--GpSGAGKSTllkLi~~~e~pt-~G-~i~~~~~dl~~l~ 70 (223)
T COG2884 23 FHIPKGEFVFLT--GPSGAGKSTLLKLIYGEERPT-RG-KILVNGHDLSRLK 70 (223)
T ss_pred EeecCceEEEEE--CCCCCCHHHHHHHHHhhhcCC-Cc-eEEECCeeccccc
Confidence 344689999999 899999999742 2232 34 5677777776665
No 241
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=40.10 E-value=18 Score=34.77 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=13.7
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
+|...++ .|||+|||+|+-
T Consensus 2 ~r~ivl~--Gpsg~GK~~l~~ 20 (183)
T PF00625_consen 2 RRPIVLV--GPSGSGKSTLAK 20 (183)
T ss_dssp SSEEEEE--SSTTSSHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHH
Confidence 3444444 899999999875
No 242
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.02 E-value=19 Score=36.52 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=18.3
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|+..-+. .|||||||+|+-+.
T Consensus 36 ~~Ge~~~l~--G~nGsGKSTLl~~l 58 (259)
T PRK14274 36 PENEVTAII--GPSGCGKSTFIKTL 58 (259)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 468877666 89999999998653
No 243
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=39.98 E-value=18 Score=38.66 Aligned_cols=24 Identities=17% Similarity=0.181 Sum_probs=17.3
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=..|+..=+. .|||||||+|+.+
T Consensus 29 ~i~~Ge~~~lv--G~sGsGKSTL~~~ 52 (326)
T PRK11022 29 SVKQGEVVGIV--GESGSGKSVSSLA 52 (326)
T ss_pred EECCCCEEEEE--CCCCChHHHHHHH
Confidence 33467665444 8999999999764
No 244
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=39.96 E-value=22 Score=35.40 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (237)
T cd03252 26 KPGEVVGIV--GRSGSGKSTLTKL 47 (237)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777776 8999999999754
No 245
>PRK10908 cell division protein FtsE; Provisional
Probab=39.91 E-value=22 Score=35.12 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (222)
T PRK10908 26 RPGEMAFLT--GHSGAGKSTLLKL 47 (222)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458777777 8999999998643
No 246
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=39.83 E-value=20 Score=41.72 Aligned_cols=26 Identities=27% Similarity=0.384 Sum_probs=20.2
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|++.-|. .|||||||+|+-+.
T Consensus 474 l~i~~Ge~vaIv--G~sGsGKSTLlklL 499 (686)
T TIGR03797 474 LQIEPGEFVAIV--GPSGSGKSTLLRLL 499 (686)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHH
Confidence 444578887777 89999999998653
No 247
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=39.80 E-value=13 Score=36.20 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=12.8
Q ss_pred EEEcCCcccchhhccc
Q psy17657 289 AAAFPSACGKTNLAML 304 (652)
Q Consensus 289 aaAFPSaCGKTnlAMl 304 (652)
+-..|||||||+|+.+
T Consensus 29 ~i~G~nGsGKSTLl~~ 44 (211)
T cd03264 29 GLLGPNGAGKTTLMRI 44 (211)
T ss_pred EEECCCCCCHHHHHHH
Confidence 4448999999999754
No 248
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=39.76 E-value=15 Score=32.76 Aligned_cols=14 Identities=43% Similarity=0.539 Sum_probs=11.6
Q ss_pred EcCCcccchhhccc
Q psy17657 291 AFPSACGKTNLAML 304 (652)
Q Consensus 291 AFPSaCGKTnlAMl 304 (652)
..|||||||.||..
T Consensus 5 ~G~~G~GKT~l~~~ 18 (165)
T cd01120 5 FGPTGSGKTTLALQ 18 (165)
T ss_pred eCCCCCCHHHHHHH
Confidence 46899999998864
No 249
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=39.70 E-value=20 Score=39.00 Aligned_cols=22 Identities=36% Similarity=0.625 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++|+..-+. .|||||||+|.-+
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLL~~ 48 (369)
T PRK11000 27 HEGEFVVFV--GPSGCGKSTLLRM 48 (369)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHH
Confidence 457655555 8999999998754
No 250
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.68 E-value=21 Score=36.67 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLl~~ 52 (280)
T PRK13649 31 EDGSYTAFI--GHTGSGKSTIMQL 52 (280)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 458776666 8999999999753
No 251
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=39.64 E-value=19 Score=35.46 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 32 ~~Ge~~~l~--G~nGsGKSTLl~~ 53 (224)
T TIGR02324 32 NAGECVALS--GPSGAGKSTLLKS 53 (224)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 357766666 8999999999764
No 252
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=39.62 E-value=14 Score=34.02 Aligned_cols=21 Identities=14% Similarity=0.064 Sum_probs=16.0
Q ss_pred EcCCcccchhhcccCCCCCCc
Q psy17657 291 AFPSACGKTNLAMLMPTLYDW 311 (652)
Q Consensus 291 AFPSaCGKTnlAMl~p~~pGw 311 (652)
..|+|||||++|.......|+
T Consensus 5 ~G~~GsGKST~a~~l~~~~~~ 25 (150)
T cd02021 5 MGVSGSGKSTVGKALAERLGA 25 (150)
T ss_pred EcCCCCCHHHHHHHHHhhcCC
Confidence 378999999999865544554
No 253
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=39.60 E-value=18 Score=41.25 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=18.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|++.-|. .|||||||+|+-+
T Consensus 359 ~~G~~v~Iv--G~sGsGKSTLl~l 380 (588)
T PRK13657 359 KPGQTVAIV--GPTGAGKSTLINL 380 (588)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 458887776 8999999999765
No 254
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=39.59 E-value=23 Score=33.68 Aligned_cols=22 Identities=18% Similarity=0.233 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~ 45 (163)
T cd03216 24 RRGEVHALL--GENGAGKSTLMKI 45 (163)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 458776666 8999999999764
No 255
>PLN02748 tRNA dimethylallyltransferase
Probab=39.53 E-value=18 Score=41.31 Aligned_cols=30 Identities=27% Similarity=0.365 Sum_probs=21.1
Q ss_pred EEEEcCCcccchhhcccCCC-CCCceEEEeecce
Q psy17657 288 VAAAFPSACGKTNLAMLMPT-LYDWKVECVGDDI 320 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~p~-~pGwkve~VGDDI 320 (652)
|+-+.|+|||||.||+.... +.| ++|.-|-
T Consensus 25 i~i~GptgsGKs~la~~la~~~~~---eii~~Ds 55 (468)
T PLN02748 25 VVVMGPTGSGKSKLAVDLASHFPV---EIINADS 55 (468)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCe---eEEcCch
Confidence 44457999999999985543 343 7776664
No 256
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=39.40 E-value=19 Score=35.60 Aligned_cols=22 Identities=23% Similarity=0.345 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|+-+
T Consensus 34 ~~Ge~~~i~--G~nGsGKSTLl~~ 55 (228)
T PRK10584 34 KRGETIALI--GESGSGKSTLLAI 55 (228)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 357766666 8999999999765
No 257
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=39.38 E-value=22 Score=35.56 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 9 ~~Ge~~~i~--G~nGsGKSTLl~~ 30 (230)
T TIGR01184 9 QQGEFISLI--GHSGCGKSTLLNL 30 (230)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457766666 8999999998653
No 258
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=39.35 E-value=17 Score=37.52 Aligned_cols=19 Identities=32% Similarity=0.548 Sum_probs=16.8
Q ss_pred CCcEEEEEEEcCCcccchhhc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlA 302 (652)
.|+-.+|. .|.|||||+|-
T Consensus 27 ~Ge~~~i~--G~NG~GKTtLL 45 (209)
T COG4133 27 AGEALQIT--GPNGAGKTTLL 45 (209)
T ss_pred CCCEEEEE--CCCCCcHHHHH
Confidence 48999999 79999999984
No 259
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=39.33 E-value=20 Score=34.29 Aligned_cols=20 Identities=25% Similarity=0.252 Sum_probs=14.2
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|....+. .++|||||+|+=
T Consensus 21 ~~~~i~l~--G~lGaGKTtl~~ 40 (133)
T TIGR00150 21 FGTVVLLK--GDLGAGKTTLVQ 40 (133)
T ss_pred CCCEEEEE--cCCCCCHHHHHH
Confidence 35554444 789999999863
No 260
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=39.32 E-value=15 Score=36.24 Aligned_cols=21 Identities=38% Similarity=0.746 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|...-|+ .|+|+|||.||+
T Consensus 17 p~gs~~li~--G~~GsGKT~l~~ 37 (226)
T PF06745_consen 17 PKGSVVLIS--GPPGSGKTTLAL 37 (226)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHH
T ss_pred CCCcEEEEE--eCCCCCcHHHHH
Confidence 557776666 799999999987
No 261
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=39.27 E-value=21 Score=35.30 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~ 45 (232)
T cd03218 24 KQGEIVGLL--GPNGAGKTTTFYM 45 (232)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 357776666 8999999999654
No 262
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=39.18 E-value=22 Score=35.97 Aligned_cols=22 Identities=18% Similarity=0.181 Sum_probs=18.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+...+. .|||||||+|+-+
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLl~~ 48 (254)
T PRK10418 27 QRGRVLALV--GGSGSGKSLTCAA 48 (254)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458887777 8999999999765
No 263
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=39.16 E-value=22 Score=34.83 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 29 ~~G~~~~i~--G~nGsGKSTLl~~ 50 (221)
T TIGR02211 29 GKGEIVAIV--GSSGSGKSTLLHL 50 (221)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 457766565 8999999999754
No 264
>PRK09183 transposase/IS protein; Provisional
Probab=39.03 E-value=17 Score=37.63 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=24.2
Q ss_pred CCcEEEEEEEcCCcccchhhcccCC---CCCCceEEEee
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMP---TLYDWKVECVG 317 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p---~~pGwkve~VG 317 (652)
+|+..++. .|+|||||.||-..- ...|++|.++.
T Consensus 101 ~~~~v~l~--Gp~GtGKThLa~al~~~a~~~G~~v~~~~ 137 (259)
T PRK09183 101 RNENIVLL--GPSGVGKTHLAIALGYEAVRAGIKVRFTT 137 (259)
T ss_pred cCCeEEEE--eCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35556665 599999999987542 13688887765
No 265
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=38.98 E-value=19 Score=36.78 Aligned_cols=21 Identities=24% Similarity=0.331 Sum_probs=16.3
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|.-+
T Consensus 24 ~Ge~~~i~--G~NGsGKSTLlk~ 44 (246)
T cd03237 24 ESEVIGIL--GPNGIGKTTFIKM 44 (246)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 47666666 8999999998654
No 266
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=38.96 E-value=19 Score=35.68 Aligned_cols=21 Identities=33% Similarity=0.317 Sum_probs=15.8
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-++ .|||||||+|+=+
T Consensus 32 ~Ge~~~l~--G~nGsGKSTLlk~ 52 (226)
T cd03234 32 SGQVMAIL--GSSGSGKTTLLDA 52 (226)
T ss_pred CCeEEEEE--CCCCCCHHHHHHH
Confidence 57665555 8999999998653
No 267
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=38.80 E-value=18 Score=44.45 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=21.8
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+-|+=|.++.+=|| .+||||||+|||
T Consensus 15 i~v~iP~~~l~v~T--GvSGSGKSSLaf 40 (924)
T TIGR00630 15 IDVEIPRDKLVVIT--GLSGSGKSSLAF 40 (924)
T ss_pred cccccCCCceEEEe--cCCCCCchhHHH
Confidence 45677888877777 899999999997
No 268
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=38.79 E-value=16 Score=35.52 Aligned_cols=14 Identities=50% Similarity=0.510 Sum_probs=11.3
Q ss_pred EEcCCcccchhhcc
Q psy17657 290 AAFPSACGKTNLAM 303 (652)
Q Consensus 290 aAFPSaCGKTnlAM 303 (652)
-..|++||||+|+=
T Consensus 6 liG~~g~GKTTL~q 19 (143)
T PF10662_consen 6 LIGPSGSGKTTLAQ 19 (143)
T ss_pred EECCCCCCHHHHHH
Confidence 34799999999964
No 269
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=38.71 E-value=24 Score=29.87 Aligned_cols=20 Identities=30% Similarity=0.673 Sum_probs=15.7
Q ss_pred CCCCcEEEEEEEcCCcccchhh
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNL 301 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnl 301 (652)
++.|..+.|+ .|||+|||+|
T Consensus 20 ~~~g~~tli~--G~nGsGKSTl 39 (62)
T PF13555_consen 20 DPRGDVTLIT--GPNGSGKSTL 39 (62)
T ss_pred cCCCcEEEEE--CCCCCCHHHH
Confidence 4456677777 8999999987
No 270
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.67 E-value=21 Score=36.60 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=18.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|+..-+. .|||||||+|..+.
T Consensus 33 ~~Ge~~~I~--G~nGsGKSTLl~~i 55 (269)
T PRK13648 33 PKGQWTSIV--GHNGSGKSTIAKLM 55 (269)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 458777777 89999999997653
No 271
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.61 E-value=24 Score=34.20 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|+|||||+|+=
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~ 44 (195)
T PRK13541 24 LPSAITYIK--GANGCGKSSLLR 44 (195)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 457766666 899999999974
No 272
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.59 E-value=24 Score=33.53 Aligned_cols=20 Identities=35% Similarity=0.537 Sum_probs=16.3
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+.|+..-+. .|+|||||+|.
T Consensus 26 ~~G~~~~l~--G~nGsGKstLl 45 (171)
T cd03228 26 KPGEKVAIV--GPSGSGKSTLL 45 (171)
T ss_pred cCCCEEEEE--CCCCCCHHHHH
Confidence 458777776 89999999984
No 273
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=38.59 E-value=23 Score=36.79 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=18.9
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-|. .|||||||+|.-+
T Consensus 28 l~i~~Ge~~~I~--G~nGaGKSTLl~~ 52 (282)
T PRK13640 28 FSIPRGSWTALI--GHNGSGKSTISKL 52 (282)
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHH
Confidence 333568777776 8999999999754
No 274
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=38.58 E-value=24 Score=33.60 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKStLl~~ 47 (173)
T cd03246 26 EPGESLAII--GPSGSGKSTLARL 47 (173)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 468776666 8999999999654
No 275
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=38.57 E-value=20 Score=35.00 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=16.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++|+..=+. .|||||||+|.-+
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~~ 46 (204)
T PRK13538 25 NAGELVQIE--GPNGAGKTSLLRI 46 (204)
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 357665555 8999999998654
No 276
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=38.56 E-value=18 Score=44.48 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=22.1
Q ss_pred EeeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 275 ILGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 275 Ilgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
=+-|+=|.++.+=|| .+||||||+|||
T Consensus 18 ni~v~iP~~~l~v~T--GvSGSGKSSLaf 44 (943)
T PRK00349 18 NIDLDIPRDKLVVFT--GLSGSGKSSLAF 44 (943)
T ss_pred ccccccCCCceEEEe--cCCCCCchhHHH
Confidence 345667888777777 899999999997
No 277
>PRK14527 adenylate kinase; Provisional
Probab=38.49 E-value=20 Score=34.67 Aligned_cols=40 Identities=15% Similarity=0.352 Sum_probs=26.0
Q ss_pred HHhhccChHHHHHHHHHHHHHHhhh--h----CCCCCHHHHHHHHH
Q psy17657 593 KELFYIDKDFWEQELNAIEKYFNDQ--V----GSDLPPAIHAEISG 632 (652)
Q Consensus 593 ~~l~~v~~~~W~~E~~~i~~~~~~~--~----g~~lP~~i~~~l~~ 632 (652)
++.+.-+.+.+.++.+.+.+||.++ + |+.-+.++++++..
T Consensus 143 ~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~ 188 (191)
T PRK14527 143 EETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILK 188 (191)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHH
Confidence 3445555688889999999999853 1 34455566655543
No 278
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.48 E-value=23 Score=35.58 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (241)
T PRK14250 27 EGGAIYTIV--GPSGAGKSTLIKL 48 (241)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358776666 8999999999754
No 279
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=38.22 E-value=25 Score=32.77 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=19.2
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=++|+...|+ .|+|||||+|.-+
T Consensus 20 ~~i~~g~~~~i~--G~nGsGKStll~~ 44 (157)
T cd00267 20 LTLKAGEIVALV--GPNGSGKSTLLRA 44 (157)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 343568777777 8999999999664
No 280
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.17 E-value=23 Score=35.77 Aligned_cols=21 Identities=24% Similarity=0.365 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.=
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~ 51 (254)
T PRK14273 31 LKNSITALI--GPSGCGKSTFLR 51 (254)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 358877777 899999999863
No 281
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=38.11 E-value=20 Score=33.00 Aligned_cols=23 Identities=13% Similarity=0.030 Sum_probs=17.5
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..+..-++--.|++||||+|...
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~ 33 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQ 33 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHH
Confidence 34455677778999999999664
No 282
>PRK10037 cell division protein; Provisional
Probab=38.09 E-value=16 Score=37.08 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=24.2
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEe
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECV 316 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~V 316 (652)
|.|++|.|-+| |||||++|.-... .-|.||=.|
T Consensus 1 ~~~iav~n~KG-----------GvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQGVRG-----------GVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEecCCC-----------CccHHHHHHHHHHHHHhcCCcEEEE
Confidence 77899999888 8999998774332 257666555
No 283
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=38.03 E-value=18 Score=31.88 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=11.7
Q ss_pred EEEEcCCcccchhhc
Q psy17657 288 VAAAFPSACGKTNLA 302 (652)
Q Consensus 288 vaaAFPSaCGKTnlA 302 (652)
|+-..|++||||+|.
T Consensus 2 i~i~G~~~~GKssl~ 16 (159)
T cd04159 2 ITLVGLQNSGKTTLV 16 (159)
T ss_pred EEEEcCCCCCHHHHH
Confidence 344579999999994
No 284
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=38.00 E-value=21 Score=36.68 Aligned_cols=23 Identities=35% Similarity=0.563 Sum_probs=18.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
..|+..-++ .|||||||+|+.+.
T Consensus 36 ~~Ge~~~i~--G~nGsGKSTLl~~l 58 (268)
T PRK10419 36 KSGETVALL--GRSGCGKSTLARLL 58 (268)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 358777776 89999999998653
No 285
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=37.99 E-value=23 Score=35.97 Aligned_cols=22 Identities=27% Similarity=0.400 Sum_probs=17.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 37 ~~Ge~~~i~--G~nGsGKSTLl~~ 58 (260)
T PRK10744 37 AKNQVTAFI--GPSGCGKSTLLRT 58 (260)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358877777 8999999999765
No 286
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=37.88 E-value=24 Score=38.31 Aligned_cols=37 Identities=30% Similarity=0.391 Sum_probs=21.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDI 320 (652)
+.|+..=+. .|||||||+|.=+ .++..| +|.+=|.|+
T Consensus 28 ~~Ge~~~l~--GpsGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~ 68 (353)
T TIGR03265 28 KKGEFVCLL--GPSGCGKTTLLRIIAGLERQTAG-TIYQGGRDI 68 (353)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHHCCCCCCce-EEEECCEEC
Confidence 456644444 7999999998532 233445 344444443
No 287
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=37.88 E-value=23 Score=35.50 Aligned_cols=22 Identities=32% Similarity=0.368 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (250)
T PRK11264 27 KPGEVVAII--GPSGSGKTTLLRC 48 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 357776666 8999999998753
No 288
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=37.83 E-value=21 Score=35.72 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=16.2
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|.=+
T Consensus 26 ~Ge~~~i~--G~nGsGKSTLl~~ 46 (248)
T PRK09580 26 PGEVHAIM--GPNGSGKSTLSAT 46 (248)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 47766666 8999999998643
No 289
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=37.79 E-value=23 Score=34.91 Aligned_cols=22 Identities=27% Similarity=0.401 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 35 ~~Ge~~~i~--G~nGsGKSTLl~~ 56 (214)
T PRK13543 35 DAGEALLVQ--GDNGAGKTTLLRV 56 (214)
T ss_pred CCCCEEEEE--cCCCCCHHHHHHH
Confidence 357776565 8999999999743
No 290
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.78 E-value=25 Score=35.27 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.=
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (242)
T cd03295 25 AKGEFLVLI--GPSGSGKTTTMK 45 (242)
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 457776666 799999999854
No 291
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=37.78 E-value=19 Score=36.86 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=17.4
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-|. .|||||||+|.-+
T Consensus 32 ~Ge~~~i~--G~nGsGKSTLl~~ 52 (265)
T PRK10253 32 DGHFTAII--GPNGCGKSTLLRT 52 (265)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 58777777 8999999999764
No 292
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=37.75 E-value=24 Score=36.18 Aligned_cols=25 Identities=44% Similarity=0.523 Sum_probs=18.8
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|.-+
T Consensus 28 l~i~~Ge~~~i~--G~nGsGKSTLl~~ 52 (269)
T PRK11831 28 LTVPRGKITAIM--GPSGIGKTTLLRL 52 (269)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 343568777776 8999999999754
No 293
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=37.61 E-value=25 Score=34.33 Aligned_cols=37 Identities=27% Similarity=0.365 Sum_probs=24.0
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC----CCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM----PTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~----p~~pGwkve~VGDDI 320 (652)
..|+...+. .|||||||+|.-+. ++..| +|.+=|.||
T Consensus 22 ~~Ge~~~l~--G~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~ 62 (211)
T cd03298 22 AQGEITAIV--GPSGSGKSTLLNLIAGFETPQSG-RVLINGVDV 62 (211)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEc
Confidence 468877777 89999999987532 33445 344444444
No 294
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=37.58 E-value=20 Score=41.85 Aligned_cols=26 Identities=31% Similarity=0.281 Sum_probs=20.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|++.-|. .|||||||+|+-+.
T Consensus 495 l~i~~G~~vaIv--G~SGsGKSTLlklL 520 (708)
T TIGR01193 495 LTIKMNSKTTIV--GMSGSGKSTLAKLL 520 (708)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHH
Confidence 344678888777 89999999998764
No 295
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=37.32 E-value=25 Score=36.19 Aligned_cols=22 Identities=36% Similarity=0.597 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 37 ~~Ge~~~l~--G~nGsGKSTLl~~ 58 (269)
T PRK14259 37 PRGKVTALI--GPSGCGKSTVLRS 58 (269)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458877777 8999999999754
No 296
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=37.22 E-value=1.9e+02 Score=30.89 Aligned_cols=108 Identities=9% Similarity=0.077 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHh-----hcCCC-eEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEec
Q psy17657 38 SPKLLKFITESAN-----LCKPK-DIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTV 111 (652)
Q Consensus 38 ~~~v~~~V~e~a~-----L~~P~-~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~ 111 (652)
.+++++.|++... -++|+ .|.+..||++-...+...+++.|..+-+.. | +| .....+++.-....+-.+
T Consensus 70 ~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l~~~gd~Vlv~~-P-~y---~~~~~~~~~~g~~~~~v~ 144 (388)
T PRK07366 70 TLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAVLNPGDFALLLD-P-GY---PSHAGGVYLAGGQIYPMP 144 (388)
T ss_pred CHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHhCCCCCEEEEcC-C-CC---cchHHHHHhcCCEEEEEE
Confidence 4678887877663 27898 699999999999999998888886444422 2 22 222345555555544433
Q ss_pred CCCCcCCCCCCCccCccccc-CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCc
Q psy17657 112 NRSDVVPDHKPGVKSQLGNW-ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSK 170 (652)
Q Consensus 112 ~~~da~p~~~~Gv~~~l~nw-~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~ 170 (652)
-..+ +.| .+.+++.+.+.+ +-|-+|+.+ --=|.|.-++.
T Consensus 145 ~~~~-------------~~~~~d~~~l~~~~~~------~~k~i~l~~-p~NPTG~~~s~ 184 (388)
T PRK07366 145 LRAE-------------NDFLPVFADIPTEVLA------QARLMVLSY-PHNPTTAIAPL 184 (388)
T ss_pred CCCc-------------cCCCCCHHHHHHhhcc------cceEEEEeC-CCCCCCccCCH
Confidence 2211 134 344555554432 123344444 44788876653
No 297
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=37.19 E-value=25 Score=35.58 Aligned_cols=25 Identities=16% Similarity=0.207 Sum_probs=18.6
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|+-+
T Consensus 26 ~~i~~Ge~~~l~--G~nGsGKSTLl~~ 50 (257)
T PRK10619 26 LQANAGDVISII--GSSGSGKSTFLRC 50 (257)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 333468777776 8999999999753
No 298
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=37.18 E-value=17 Score=38.04 Aligned_cols=20 Identities=30% Similarity=0.725 Sum_probs=17.9
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|-+|+|.+++| |+|||+++-
T Consensus 1 M~~iai~s~kG-----------GvG~TTltA 20 (243)
T PF06564_consen 1 MKVIAIVSPKG-----------GVGKTTLTA 20 (243)
T ss_pred CcEEEEecCCC-----------CCCHHHHHH
Confidence 88999999999 899998865
No 299
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=37.18 E-value=24 Score=35.45 Aligned_cols=22 Identities=23% Similarity=0.395 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-|+ .|||||||+|+=+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~ 52 (252)
T CHL00131 31 NKGEIHAIM--GPNGSGKSTLSKV 52 (252)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 358777777 8999999998654
No 300
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=37.15 E-value=24 Score=36.12 Aligned_cols=21 Identities=24% Similarity=0.281 Sum_probs=16.3
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-|. .|||||||+|.=
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~ 45 (271)
T PRK13638 25 SLSPVTGLV--GANGCGKSTLFM 45 (271)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 357776666 899999999864
No 301
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=37.11 E-value=24 Score=35.21 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 27 ~~Ge~~~l~--G~nGsGKSTLl~~ 48 (241)
T PRK10895 27 NSGEIVGLL--GPNGAGKTTTFYM 48 (241)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 458777666 8999999999754
No 302
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=37.11 E-value=19 Score=38.68 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-++| |+|||||.||+.
T Consensus 94 ~~g~i~~i~G--~~g~GKT~l~~~ 115 (316)
T TIGR02239 94 ETGSITEIFG--EFRTGKTQLCHT 115 (316)
T ss_pred CCCeEEEEEC--CCCCCcCHHHHH
Confidence 3477776664 999999999973
No 303
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=37.06 E-value=22 Score=35.42 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|+-+
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~~ 46 (240)
T PRK09493 25 DQGEVVVII--GPSGSGKSTLLRC 46 (240)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 358776666 8999999999764
No 304
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=37.05 E-value=20 Score=35.79 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=21.7
Q ss_pred EEEEEEcCCcccchhhcccCC---CCCCceEEEeecce
Q psy17657 286 MFVAAAFPSACGKTNLAMLMP---TLYDWKVECVGDDI 320 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~p---~~pGwkve~VGDDI 320 (652)
+.++-..|+|+|||+++-=.- ...|+||-.|.=|.
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~ 39 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADT 39 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEEST
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCC
Confidence 345666899999998854100 01389998888664
No 305
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=37.01 E-value=24 Score=38.69 Aligned_cols=37 Identities=24% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc----cCCCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM----LMPTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM----l~p~~pGwkve~VGDDI 320 (652)
+.|+. ++-..|||||||+|.- +.++..| +|.+=|.+|
T Consensus 43 ~~Ge~--~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i 83 (377)
T PRK11607 43 YKGEI--FALLGASGCGKSTLLRMLAGFEQPTAG-QIMLDGVDL 83 (377)
T ss_pred cCCCE--EEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 35764 4445899999999843 3344456 344444443
No 306
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.99 E-value=25 Score=36.10 Aligned_cols=20 Identities=20% Similarity=0.343 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
..|+..-+. .|||||||+|.
T Consensus 33 ~~Ge~~~l~--G~nGsGKSTLl 52 (271)
T PRK13632 33 NEGEYVAIL--GHNGSGKSTIS 52 (271)
T ss_pred cCCCEEEEE--CCCCCCHHHHH
Confidence 358877777 89999999984
No 307
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=36.98 E-value=23 Score=39.60 Aligned_cols=25 Identities=36% Similarity=0.586 Sum_probs=19.9
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+=+.|++.-|. .|||||||+|+-+.
T Consensus 344 ~i~~G~~~~iv--G~sGsGKSTL~~ll 368 (529)
T TIGR02857 344 TVPPGERVALV--GPSGAGKSTLLNLL 368 (529)
T ss_pred EECCCCEEEEE--CCCCCCHHHHHHHH
Confidence 33568888887 89999999997654
No 308
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=36.89 E-value=26 Score=34.16 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=15.6
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+..-+. .|||||||+|.=
T Consensus 26 ~Ge~~~l~--G~nGsGKSTLl~ 45 (200)
T PRK13540 26 AGGLLHLK--GSNGAGKTTLLK 45 (200)
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 57666665 899999999854
No 309
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=36.81 E-value=26 Score=34.31 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (220)
T cd03263 26 YKGEIFGLL--GHNGAGKTTTLKM 47 (220)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 357766565 8999999999764
No 310
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=36.77 E-value=26 Score=34.18 Aligned_cols=37 Identities=24% Similarity=0.448 Sum_probs=23.0
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC----CCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM----PTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~----p~~pGwkve~VGDDI 320 (652)
..|+..-+. .|||||||+|.-+. ++..| +|..-|.||
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~~l~G~~~~~~G-~v~~~g~~~ 64 (213)
T cd03301 24 ADGEFVVLL--GPSGCGKTTTLRMIAGLEEPTSG-RIYIGGRDV 64 (213)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 357765555 89999999997543 22334 455445444
No 311
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.75 E-value=24 Score=35.53 Aligned_cols=22 Identities=32% Similarity=0.525 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|+ .|||||||+|+-+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (252)
T PRK14256 28 PENSVTAII--GPSGCGKSTVLRS 49 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458776666 8999999999754
No 312
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=36.72 E-value=2.5e+02 Score=30.17 Aligned_cols=108 Identities=15% Similarity=0.148 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHH----hh---cCCC-eEEEEcCCHHHHHHHHHHHHhcCccc-ccccccCeEEeccCCCCccccccceEE
Q psy17657 38 SPKLLKFITESA----NL---CKPK-DIHICDGTEEENKAILKKMVDTNTVK-RVRKHVNCWLASTNPADVARVEDKTFI 108 (652)
Q Consensus 38 ~~~v~~~V~e~a----~L---~~P~-~I~icdGS~eE~~~l~~~~~~~G~~~-~L~k~~n~~l~rsdP~DvARve~rTfI 108 (652)
.+++++.|++.. .+ ++|+ .|.++.|+++=...+.+.+++.|... -|-..| +| ......++......+
T Consensus 66 ~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l~~~gd~~~vlv~~P-~y---~~~~~~~~~~g~~~~ 141 (393)
T TIGR03538 66 LPELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAVINPGQAPLVVMPNP-FY---QIYEGAALLAGAEPY 141 (393)
T ss_pred CHHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHHcCCCCcceEEecCC-CC---cchHHHHHhcCCeEE
Confidence 467777777765 21 6885 79999999999999999999888531 111112 22 222335555554444
Q ss_pred EecCCCCcCCCCCCCccCccccc-CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCC
Q psy17657 109 CTVNRSDVVPDHKPGVKSQLGNW-ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLS 169 (652)
Q Consensus 109 ~t~~~~da~p~~~~Gv~~~l~nw-~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s 169 (652)
-.+-.++ +.| .+.+++++.+.+ +-.+.+++.---|.|.-++
T Consensus 142 ~v~~~~~-------------~~~~~d~~~l~~~~~~-------~~k~i~l~~p~NPtG~~~s 183 (393)
T TIGR03538 142 FLNCTAE-------------NGFLPDFDAVPESVWR-------RCQLLFVCSPGNPTGAVLS 183 (393)
T ss_pred Eeecccc-------------CCCCCCHHHHHHHHhh-------cceEEEEeCCCCCcCcccC
Confidence 3332211 134 467777776643 2244455555667776655
No 313
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=36.70 E-value=25 Score=34.29 Aligned_cols=22 Identities=23% Similarity=0.363 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|. .|||||||+|.-+
T Consensus 32 ~~G~~~~i~--G~nGsGKSTLl~~ 53 (207)
T cd03369 32 KAGEKIGIV--GRTGAGKSTLILA 53 (207)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 357776666 8999999999754
No 314
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=36.32 E-value=22 Score=41.54 Aligned_cols=26 Identities=27% Similarity=0.383 Sum_probs=20.6
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|++.-|. .|||||||+|+-+.
T Consensus 500 l~i~~Ge~vaIv--G~sGsGKSTLlklL 525 (710)
T TIGR03796 500 LTLQPGQRVALV--GGSGSGKSTIAKLV 525 (710)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 444679887777 89999999998654
No 315
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=36.29 E-value=34 Score=30.79 Aligned_cols=34 Identities=18% Similarity=0.114 Sum_probs=19.2
Q ss_pred EEEEcCCcccchhhcc--cCCCCCCceEEEeecceE
Q psy17657 288 VAAAFPSACGKTNLAM--LMPTLYDWKVECVGDDIA 321 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM--l~p~~pGwkve~VGDDIA 321 (652)
|+-..+++||||+|.. +.-..+.-...++|.|..
T Consensus 3 i~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~ 38 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYG 38 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEE
Confidence 3445799999999964 111111122356676654
No 316
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=36.24 E-value=23 Score=37.83 Aligned_cols=22 Identities=27% Similarity=0.190 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.+|+..=| ..|||||||+|+.+
T Consensus 31 ~~Ge~~~i--vG~sGsGKSTLl~~ 52 (330)
T PRK15093 31 TEGEIRGL--VGESGSGKSLIAKA 52 (330)
T ss_pred CCCCEEEE--ECCCCCCHHHHHHH
Confidence 35766544 48999999999864
No 317
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=36.17 E-value=26 Score=36.16 Aligned_cols=22 Identities=36% Similarity=0.532 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|. .|||||||+|+-+
T Consensus 44 ~~Ge~~~Ii--G~nGsGKSTLl~~ 65 (274)
T PRK14265 44 PAKKIIAFI--GPSGCGKSTLLRC 65 (274)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458887776 8999999999754
No 318
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=36.17 E-value=25 Score=36.52 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=16.9
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|.=+
T Consensus 26 ~Ge~~~l~--G~nGsGKSTLl~~ 46 (272)
T PRK13547 26 PGRVTALL--GRNGAGKSTLLKA 46 (272)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 58777776 8999999998654
No 319
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=36.05 E-value=23 Score=35.24 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=16.3
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|.-+
T Consensus 5 ~Ge~~~l~--G~nGsGKSTLl~~ 25 (223)
T TIGR03771 5 KGELLGLL--GPNGAGKTTLLRA 25 (223)
T ss_pred CCcEEEEE--CCCCCCHHHHHHH
Confidence 47666666 8999999998654
No 320
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=35.99 E-value=20 Score=39.18 Aligned_cols=21 Identities=24% Similarity=0.203 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|..+-|+| |+|||||.||+
T Consensus 121 ~~g~i~~i~G--~~g~GKT~l~~ 141 (342)
T PLN03186 121 ETGSITEIYG--EFRTGKTQLCH 141 (342)
T ss_pred cCceEEEEEC--CCCCCccHHHH
Confidence 4477777774 99999999997
No 321
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.99 E-value=24 Score=35.44 Aligned_cols=22 Identities=32% Similarity=0.380 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-|. .|||||||+|+.+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (250)
T PRK14262 27 FKNQITAII--GPSGCGKTTLLRS 48 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358776666 8999999999764
No 322
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=35.99 E-value=22 Score=40.51 Aligned_cols=22 Identities=27% Similarity=0.433 Sum_probs=18.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|++.-|. .|||||||+|+-+
T Consensus 339 ~~G~~~~iv--G~sGsGKSTLl~l 360 (569)
T PRK10789 339 KPGQMLGIC--GPTGSGKSTLLSL 360 (569)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888777 8999999999865
No 323
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=35.97 E-value=21 Score=40.60 Aligned_cols=26 Identities=31% Similarity=0.606 Sum_probs=21.1
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|+++-+. .|||||||+|+-+.
T Consensus 363 ~~i~~G~~~aiv--G~sGsGKSTl~~ll 388 (555)
T TIGR01194 363 LRIAQGDIVFIV--GENGCGKSTLAKLF 388 (555)
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHHH
Confidence 444679888887 89999999998764
No 324
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=35.96 E-value=19 Score=32.73 Aligned_cols=22 Identities=18% Similarity=0.144 Sum_probs=15.8
Q ss_pred EcCCcccchhhcccCCCCCCce
Q psy17657 291 AFPSACGKTNLAMLMPTLYDWK 312 (652)
Q Consensus 291 AFPSaCGKTnlAMl~p~~pGwk 312 (652)
..|+|||||++|...--.-||.
T Consensus 5 ~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 5 IGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred EcCCCCCHHHHHHHHHHHhCCC
Confidence 3799999999997654333664
No 325
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=35.92 E-value=17 Score=38.99 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=15.1
Q ss_pred EEEEEcCCcccchhhcccC
Q psy17657 287 FVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~ 305 (652)
-|+-+.|+|||||.||...
T Consensus 6 ~i~i~GptgsGKt~la~~l 24 (307)
T PRK00091 6 VIVIVGPTASGKTALAIEL 24 (307)
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 3555689999999999843
No 326
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=35.73 E-value=28 Score=34.65 Aligned_cols=24 Identities=38% Similarity=0.606 Sum_probs=18.1
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=+.|+..-+. .|||||||+|+-+
T Consensus 25 ~i~~Ge~~~l~--G~nGsGKSTLl~~ 48 (238)
T cd03249 25 TIPPGKTVALV--GSSGCGKSTVVSL 48 (238)
T ss_pred EecCCCEEEEE--eCCCCCHHHHHHH
Confidence 33468776666 7999999999754
No 327
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=35.69 E-value=24 Score=36.48 Aligned_cols=21 Identities=24% Similarity=0.366 Sum_probs=16.7
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|.-+
T Consensus 25 ~Ge~~~Iv--G~nGsGKSTLlk~ 45 (255)
T cd03236 25 EGQVLGLV--GPNGIGKSTALKI 45 (255)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 47777776 8999999999643
No 328
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=35.63 E-value=22 Score=40.18 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=19.6
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+=+.|++.-+. .|||||||+|+.+.
T Consensus 340 ~i~~G~~~~iv--G~sGsGKSTL~~ll 364 (544)
T TIGR01842 340 RLQAGEALAII--GPSGSGKSTLARLI 364 (544)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 33568887777 89999999998753
No 329
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=35.59 E-value=22 Score=37.85 Aligned_cols=20 Identities=20% Similarity=0.120 Sum_probs=15.0
Q ss_pred EEEEEcCCcccchhhcccCC
Q psy17657 287 FVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~p 306 (652)
.|.-..+||||||++|....
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~ 27 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALE 27 (288)
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 34444899999999988643
No 330
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=35.59 E-value=23 Score=35.84 Aligned_cols=21 Identities=24% Similarity=0.308 Sum_probs=16.5
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-|. .|||||||+|..+
T Consensus 29 ~Ge~~~i~--G~nGsGKSTLl~~ 49 (258)
T PRK14241 29 PRSVTAFI--GPSGCGKSTVLRT 49 (258)
T ss_pred CCcEEEEE--CCCCCCHHHHHHH
Confidence 47666555 8999999999765
No 331
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=35.58 E-value=24 Score=37.98 Aligned_cols=22 Identities=36% Similarity=0.475 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.+|+..=|. .|||||||+|+.+
T Consensus 45 ~~Ge~~~lv--G~sGsGKSTLlk~ 66 (331)
T PRK15079 45 YEGETLGVV--GESGCGKSTFARA 66 (331)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 467766665 8999999998764
No 332
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=35.55 E-value=26 Score=35.22 Aligned_cols=21 Identities=29% Similarity=0.444 Sum_probs=16.7
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|.-+
T Consensus 29 ~Ge~~~l~--G~nGsGKSTLl~~ 49 (253)
T PRK14267 29 QNGVFALM--GPSGCGKSTLLRT 49 (253)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 57776665 8999999999765
No 333
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=35.53 E-value=27 Score=37.94 Aligned_cols=37 Identities=27% Similarity=0.414 Sum_probs=23.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDI 320 (652)
..|+..-+ ..|||||||+|.-+ .++..| +|.+=|.|+
T Consensus 26 ~~Ge~~~l--lGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i 66 (353)
T PRK10851 26 PSGQMVAL--LGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDV 66 (353)
T ss_pred cCCCEEEE--ECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEC
Confidence 45775544 48999999998643 244456 355555554
No 334
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=35.49 E-value=24 Score=34.23 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=16.0
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|+..-+. .|||||||+|.-+
T Consensus 25 ~Ge~~~i~--G~nGsGKSTLl~~ 45 (198)
T TIGR01189 25 AGEALQVT--GPNGIGKTTLLRI 45 (198)
T ss_pred CCcEEEEE--CCCCCCHHHHHHH
Confidence 47665555 8999999999754
No 335
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=35.44 E-value=22 Score=36.21 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=18.1
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|+..-|. .++|||||.||+
T Consensus 21 p~g~~~lI~--G~pGsGKT~f~~ 41 (260)
T COG0467 21 PRGSVVLIT--GPPGTGKTIFAL 41 (260)
T ss_pred cCCcEEEEE--cCCCCcHHHHHH
Confidence 778777777 789999999988
No 336
>PHA02244 ATPase-like protein
Probab=35.39 E-value=21 Score=39.92 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=17.2
Q ss_pred cCCcccchhhcccCCCCCCceEEEee
Q psy17657 292 FPSACGKTNLAMLMPTLYDWKVECVG 317 (652)
Q Consensus 292 FPSaCGKTnlAMl~p~~pGwkve~VG 317 (652)
.|+|||||.||....-.-|+....|.
T Consensus 126 GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 126 GGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred CCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 39999999999865433454444443
No 337
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=35.38 E-value=19 Score=36.33 Aligned_cols=24 Identities=33% Similarity=0.516 Sum_probs=20.2
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
.|.|+.|.|-+| |+|||++|+...
T Consensus 1 ~~~iI~v~n~KG-----------GvGKTT~a~nLa 24 (259)
T COG1192 1 MMKIIAVANQKG-----------GVGKTTTAVNLA 24 (259)
T ss_pred CCEEEEEEecCC-----------CccHHHHHHHHH
Confidence 378899999888 899999999654
No 338
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=35.03 E-value=21 Score=38.13 Aligned_cols=22 Identities=36% Similarity=0.543 Sum_probs=19.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+=|. .|.+||||++||-
T Consensus 58 ~~g~ItEiy--G~~gsGKT~lal~ 79 (279)
T COG0468 58 PRGRITEIY--GPESSGKTTLALQ 79 (279)
T ss_pred ccceEEEEe--cCCCcchhhHHHH
Confidence 679999888 6888999999995
No 339
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=35.02 E-value=25 Score=36.09 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=18.6
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=+.|+.+-+. .|||||||+|.-+
T Consensus 46 ~i~~Ge~~~l~--G~nGsGKSTLl~~ 69 (269)
T cd03294 46 DVREGEIFVIM--GLSGSGKSTLLRC 69 (269)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 33468777777 8999999999764
No 340
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=34.83 E-value=20 Score=36.87 Aligned_cols=15 Identities=40% Similarity=0.507 Sum_probs=12.6
Q ss_pred EcCCcccchhhcccC
Q psy17657 291 AFPSACGKTNLAMLM 305 (652)
Q Consensus 291 AFPSaCGKTnlAMl~ 305 (652)
..|+|||||.||...
T Consensus 36 ~Gp~G~GKT~la~~i 50 (305)
T TIGR00635 36 YGPPGLGKTTLAHII 50 (305)
T ss_pred ECCCCCCHHHHHHHH
Confidence 479999999999753
No 341
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=34.74 E-value=1.6e+02 Score=32.14 Aligned_cols=107 Identities=17% Similarity=0.269 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHh--hcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCC
Q psy17657 38 SPKLLKFITESAN--LCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSD 115 (652)
Q Consensus 38 ~~~v~~~V~e~a~--L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~d 115 (652)
.+++++.|++... +-.|+.|.++.|+++=...+.+.+++.|..+=+.. | +| .....+++.-....+..+-.++
T Consensus 123 ~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~-P-~y---~~~~~~~~~~g~~~~~v~~~~~ 197 (431)
T PRK15481 123 SPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVED-P-CF---LSSINMLRYAGFSASPVSVDAE 197 (431)
T ss_pred CHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeC-C-Cc---HHHHHHHHHcCCeEEeeccCCC
Confidence 4678888887765 23467999999999999999998888886544422 2 23 2223455555555544432211
Q ss_pred cCCCCCCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCc
Q psy17657 116 VVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSK 170 (652)
Q Consensus 116 a~p~~~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~ 170 (652)
| ++++++++.+++ +=|-+|++|---=|.|.-++.
T Consensus 198 -------g--------~~~~~l~~~~~~------~~k~i~~~p~p~NPTG~~~s~ 231 (431)
T PRK15481 198 -------G--------MQPEKLERALAQ------GARAVILTPRAHNPTGCSLSA 231 (431)
T ss_pred -------C--------CCHHHHHHHHhc------CCCEEEECCCCCCCCCccCCH
Confidence 1 467777777654 236678888888898887663
No 342
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=34.65 E-value=23 Score=34.74 Aligned_cols=36 Identities=31% Similarity=0.322 Sum_probs=25.1
Q ss_pred CCcEEEEEEEcCCcccchhhcccCC-CC--CCceEEEeecc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMP-TL--YDWKVECVGDD 319 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p-~~--pGwkve~VGDD 319 (652)
+|-..+++ ..||+|||+||-..- .| .|++|..+.-|
T Consensus 1 ~g~vIwlt--GlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD 39 (156)
T PF01583_consen 1 KGFVIWLT--GLSGSGKTTLARALERRLFARGIKVYLLDGD 39 (156)
T ss_dssp S-EEEEEE--SSTTSSHHHHHHHHHHHHHHTTS-EEEEEHH
T ss_pred CCEEEEEE--CCCCCCHHHHHHHHHHHHHHcCCcEEEecCc
Confidence 35667777 789999999997543 22 68888888655
No 343
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=34.65 E-value=29 Score=34.95 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+.+-|. .|||||||+|.-+
T Consensus 28 ~~G~~~~i~--G~nGsGKSTLl~~ 49 (251)
T PRK14249 28 PERQITAII--GPSGCGKSTLLRA 49 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358877666 8999999999654
No 344
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=34.62 E-value=27 Score=39.78 Aligned_cols=25 Identities=24% Similarity=0.286 Sum_probs=19.5
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|++.-|. .|||||||+|+=+
T Consensus 362 l~i~~Ge~iaIv--G~SGsGKSTLl~l 386 (592)
T PRK10790 362 LSVPSRGFVALV--GHTGSGKSTLASL 386 (592)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 344568888777 8999999998754
No 345
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=34.61 E-value=27 Score=30.85 Aligned_cols=18 Identities=33% Similarity=0.322 Sum_probs=15.0
Q ss_pred EEEEEEEcCCcccchhhc
Q psy17657 285 KMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlA 302 (652)
+..|+-..++|+|||+|.
T Consensus 3 ~~~i~~~G~~g~GKttl~ 20 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLL 20 (168)
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 456888899999999974
No 346
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=34.58 E-value=15 Score=44.73 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=25.8
Q ss_pred chhhhhhhhcccc-ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 259 KCFALRINQVKEP-NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 259 KcfALRiAS~~ar-HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
.|.|+|.-.++.. .| +...||-..|||||||++|-+..
T Consensus 17 ~~~~~~~~~~~~~~~m----------~~~~i~idG~~gsGKst~~~~la 55 (863)
T PRK12269 17 RCVAVRARTVLQCRPM----------GTVIIALDGPAGSGKSSVCRLLA 55 (863)
T ss_pred eeEEEeeeeeeeeccc----------CceEEEEECCCCCCHHHHHHHHH
Confidence 4777775444432 44 12567777899999999987654
No 347
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=34.55 E-value=26 Score=37.82 Aligned_cols=39 Identities=23% Similarity=0.132 Sum_probs=24.9
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecce
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDI 320 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDI 320 (652)
+=+.|+.+-+. .|||||||+|.-+ .++..| +|..=|.|+
T Consensus 19 ~i~~Gei~~l~--G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~i 61 (354)
T TIGR02142 19 TLPGQGVTAIF--GRSGSGKTTLIRLIAGLTRPDEG-EIVLNGRTL 61 (354)
T ss_pred EECCCCEEEEE--CCCCCCHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 33468766666 8999999999653 344456 344445444
No 348
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=34.52 E-value=28 Score=35.00 Aligned_cols=21 Identities=24% Similarity=0.230 Sum_probs=16.2
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|+-+
T Consensus 30 ~Ge~~~l~--G~nGsGKSTLl~~ 50 (255)
T PRK11300 30 EQEIVSLI--GPNGAGKTTVFNC 50 (255)
T ss_pred CCeEEEEE--CCCCCCHHHHHHH
Confidence 57765555 8999999998654
No 349
>PLN02231 alanine transaminase
Probab=34.52 E-value=1.5e+02 Score=34.19 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=66.6
Q ss_pred CCHHHHHHHHHHHhh-----cCCCeEEEEcCCHHHHHHHHHHHHh-cC--cccccccccCeEEeccCCCCccccccceEE
Q psy17657 37 VSPKLLKFITESANL-----CKPKDIHICDGTEEENKAILKKMVD-TN--TVKRVRKHVNCWLASTNPADVARVEDKTFI 108 (652)
Q Consensus 37 l~~~v~~~V~e~a~L-----~~P~~I~icdGS~eE~~~l~~~~~~-~G--~~~~L~k~~n~~l~rsdP~DvARve~rTfI 108 (652)
-.+++++.|++...- +.|+.|++.+|+.+=...+.+.++. .| .+++-+.|++.. ..++.-..+.+
T Consensus 169 G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~~~~gd~Vli~~P~Y~~y~-------~~~~~~g~~~v 241 (534)
T PLN02231 169 GIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLIRSEKDGILCPIPQYPLYS-------ASIALHGGTLV 241 (534)
T ss_pred CcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhccCCCCEEEEeCCCChhHH-------HHHHHcCCEEE
Confidence 367888888887642 8999999999999999999998874 45 444444444322 23333344433
Q ss_pred EecCCCCcCCCCCCCccCccccc-CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCC
Q psy17657 109 CTVNRSDVVPDHKPGVKSQLGNW-ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLS 169 (652)
Q Consensus 109 ~t~~~~da~p~~~~Gv~~~l~nw-~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s 169 (652)
-.+-.++ ++| ++.+++++.+++.-..-.+=|-+||+ ---=|.|.-++
T Consensus 242 ~~~l~~~-------------~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~-nP~NPTG~vls 289 (534)
T PLN02231 242 PYYLDEA-------------TGWGLEISELKKQLEDARSKGITVRALVVI-NPGNPTGQVLA 289 (534)
T ss_pred EEecCcc-------------cCCCCCHHHHHHHHHHHhhcCCCeEEEEEe-CCCCCCCcCCC
Confidence 3322111 145 57888888876532211112334444 33447777654
No 350
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=34.50 E-value=24 Score=40.07 Aligned_cols=26 Identities=31% Similarity=0.443 Sum_probs=20.5
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
+=+.|++.-+. .|||||||+|+-|..
T Consensus 351 ~i~~Ge~vaiV--G~sGsGKSTl~~LL~ 376 (567)
T COG1132 351 SIEPGEKVAIV--GPSGSGKSTLIKLLL 376 (567)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHHHh
Confidence 34568887766 899999999988654
No 351
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=34.47 E-value=30 Score=33.91 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=16.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (221)
T cd03244 28 KPGEKVGIV--GRTGSGKSSLLLA 49 (221)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 457765555 8999999998653
No 352
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=34.41 E-value=20 Score=38.77 Aligned_cols=17 Identities=18% Similarity=0.239 Sum_probs=14.2
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|..+.|||||||++|-.
T Consensus 95 IlI~G~sgsGKStlA~~ 111 (301)
T PRK04220 95 ILIGGASGVGTSTIAFE 111 (301)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 56668999999999875
No 353
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=34.39 E-value=28 Score=37.41 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 29 ~~Gei~~ii--G~nGsGKSTLlk~ 50 (343)
T PRK11153 29 PAGEIFGVI--GASGAGKSTLIRC 50 (343)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHH
Confidence 468777666 7999999999743
No 354
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=34.37 E-value=26 Score=34.69 Aligned_cols=22 Identities=41% Similarity=0.667 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|+|||||+|..+
T Consensus 25 ~~Ge~~~l~--G~nGsGKSTLl~~ 46 (236)
T cd03253 25 PAGKKVAIV--GPSGSGKSTILRL 46 (236)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999999764
No 355
>PLN02840 tRNA dimethylallyltransferase
Probab=34.29 E-value=24 Score=39.87 Aligned_cols=22 Identities=23% Similarity=0.446 Sum_probs=17.2
Q ss_pred EEEEEEEcCCcccchhhcccCC
Q psy17657 285 KMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl~p 306 (652)
...|+-+.|+|||||.||...-
T Consensus 21 ~~vi~I~GptgsGKTtla~~La 42 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELA 42 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3456777999999999998543
No 356
>COG4549 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.27 E-value=74 Score=32.21 Aligned_cols=50 Identities=18% Similarity=0.349 Sum_probs=31.4
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcc-cchhhcc----------cCC-CCCCceEEEeecceE
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSAC-GKTNLAM----------LMP-TLYDWKVECVGDDIA 321 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaC-GKTnlAM----------l~p-~~pGwkve~VGDDIA 321 (652)
|.-+.-=..+.|-..--+---||+| ||-++.. -+| +.|||++|++--|-.
T Consensus 24 H~s~~~~ea~~gs~~~atlrVPhgcdgkaTtkV~vklPeGvi~~kp~PkpGW~le~~Kg~y~ 85 (178)
T COG4549 24 HVSLETGEAAAGSTYKATLRVPHGCDGKATTKVRVKLPEGVIFAKPQPKPGWTLETIKGDYE 85 (178)
T ss_pred EEEeccccccCCceEEEEEecCCCCCCCcceEEEEeCCCceeeecccCCCCcEEEEeeccee
Confidence 7766655566664333333489999 7655433 223 469999999876654
No 357
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=34.16 E-value=31 Score=33.93 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=15.5
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+.|+..=+. .|||||||+|.
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl 44 (218)
T cd03290 25 PTGQLTMIV--GQVGCGKSSLL 44 (218)
T ss_pred cCCCEEEEE--CCCCCCHHHHH
Confidence 357666666 89999999985
No 358
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=34.05 E-value=21 Score=33.15 Aligned_cols=21 Identities=29% Similarity=0.203 Sum_probs=11.4
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
++.+.+.--.|+|||||.|..
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~ 42 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLR 42 (185)
T ss_dssp -----EEE-B-TTSSHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHH
Confidence 344455555899999999965
No 359
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=34.04 E-value=30 Score=35.37 Aligned_cols=24 Identities=25% Similarity=0.348 Sum_probs=18.6
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=+.|+..-|. .|||||||+|+-+
T Consensus 26 ~i~~Ge~~~I~--G~NGsGKSTLl~~ 49 (251)
T PRK09544 26 ELKPGKILTLL--GPNGAGKSTLVRV 49 (251)
T ss_pred EEcCCcEEEEE--CCCCCCHHHHHHH
Confidence 33468877777 8999999999754
No 360
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=33.95 E-value=30 Score=35.58 Aligned_cols=21 Identities=24% Similarity=0.270 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.-
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLl~ 51 (272)
T PRK15056 31 PGGSIAALV--GVNGSGKSTLFK 51 (272)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 358777666 899999999864
No 361
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=33.94 E-value=29 Score=34.90 Aligned_cols=22 Identities=23% Similarity=0.387 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~~ 51 (253)
T PRK14242 30 EQNQVTALI--GPSGCGKSTFLRC 51 (253)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 357776666 8999999998643
No 362
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=33.78 E-value=14 Score=37.38 Aligned_cols=28 Identities=18% Similarity=0.165 Sum_probs=17.4
Q ss_pred EEEEcCCcccchhhcccCCCCCCceEEE
Q psy17657 288 VAAAFPSACGKTNLAMLMPTLYDWKVEC 315 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~p~~pGwkve~ 315 (652)
|+-+.|+|||||+.|=+..-.-|.+.-.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 5566778888887776554444554433
No 363
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=33.70 E-value=29 Score=35.24 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-|+ .|||||||+|.-+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (262)
T PRK09984 28 HHGEMVALL--GPSGSGKSTLLRH 49 (262)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 358776666 7999999999754
No 364
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=33.66 E-value=28 Score=35.04 Aligned_cols=22 Identities=23% Similarity=0.153 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++|+..-+. .|||||||+|.-+
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~ 48 (253)
T TIGR02323 27 YPGEVLGIV--GESGSGKSTLLGC 48 (253)
T ss_pred eCCcEEEEE--CCCCCCHHHHHHH
Confidence 457666665 8999999998654
No 365
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.48 E-value=26 Score=34.07 Aligned_cols=21 Identities=29% Similarity=0.227 Sum_probs=15.6
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..=+. .|||||||+|.-+
T Consensus 32 ~Ge~~~l~--G~nGsGKSTLl~~ 52 (192)
T cd03232 32 PGTLTALM--GESGAGKTTLLDV 52 (192)
T ss_pred CCcEEEEE--CCCCCCHHHHHHH
Confidence 46555555 8999999998654
No 366
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=33.41 E-value=26 Score=35.82 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|..+
T Consensus 34 ~~Ge~~~i~--G~nGsGKSTLl~~ 55 (264)
T PRK14243 34 PKNQITAFI--GPSGCGKSTILRC 55 (264)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458777666 8999999999865
No 367
>PF09130 DUF1932: Domain of unknown function (DUF1932); InterPro: IPR015814 This domain has been found in a number of eukaryotic and prokaryotic proteins, some of which are predicted to be 6-phosphogluconate dehydrogenase, NAD-binding proteins.; PDB: 3QSG_A 1I36_A 4EZB_A.
Probab=33.33 E-value=59 Score=27.66 Aligned_cols=44 Identities=18% Similarity=0.297 Sum_probs=31.5
Q ss_pred HHHhhccChHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHH
Q psy17657 592 LKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLK 638 (652)
Q Consensus 592 ~~~l~~v~~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl~ 638 (652)
+-.-.......|..|++++.+++.+ .| +|+.+.+...+.-+++.
T Consensus 29 ~v~~~~~hA~Rr~~EM~Eia~tl~~-~g--~~~~m~~a~a~~~~~~a 72 (73)
T PF09130_consen 29 LVPRMAPHAYRRAAEMEEIADTLAE-LG--LPPEMFRAAAEVLRRVA 72 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC-TT-----HHHHHHHHHHHHCH
T ss_pred HcccchhhHHHHHHHHHHHHHHHHH-cC--CCHHHHHHHHHHHHHhh
Confidence 3444556678899999999999984 55 89998888877777653
No 368
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=33.06 E-value=32 Score=35.28 Aligned_cols=21 Identities=29% Similarity=0.418 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.-
T Consensus 37 ~~Ge~~~i~--G~NGsGKSTLl~ 57 (267)
T PRK15112 37 REGQTLAII--GENGSGKSTLAK 57 (267)
T ss_pred cCCCEEEEE--cCCCCCHHHHHH
Confidence 457776666 899999999854
No 369
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=33.04 E-value=28 Score=39.42 Aligned_cols=24 Identities=33% Similarity=0.521 Sum_probs=19.2
Q ss_pred CCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
=+.|++.-+. .|||||||+|+-+.
T Consensus 346 i~~G~~~aiv--G~sGsGKSTL~~ll 369 (547)
T PRK10522 346 IKRGELLFLI--GGNGSGKSTLAMLL 369 (547)
T ss_pred EcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 3568887777 89999999998753
No 370
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=33.03 E-value=29 Score=35.00 Aligned_cols=22 Identities=23% Similarity=0.360 Sum_probs=17.3
Q ss_pred CCcEEEEEEEcCCcccchhhcccC
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
.|+..-|. .|||||||+|+-+.
T Consensus 30 ~Ge~~~I~--G~nGsGKSTLl~~i 51 (251)
T PRK14244 30 KREVTAFI--GPSGCGKSTFLRCF 51 (251)
T ss_pred CCCEEEEE--CCCCCCHHHHHHHH
Confidence 47776666 89999999998653
No 371
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=32.94 E-value=22 Score=37.30 Aligned_cols=35 Identities=14% Similarity=0.005 Sum_probs=24.1
Q ss_pred EEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 286 MFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
+.++-..|+|||||+++.-.-. -.|+||-.|.-|.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 3444447999999986542211 2689999998886
No 372
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=32.91 E-value=30 Score=35.88 Aligned_cols=22 Identities=23% Similarity=0.267 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..=+. .|||||||+|.-+
T Consensus 35 ~~Ge~~~l~--G~nGsGKSTLl~~ 56 (289)
T PRK13645 35 KKNKVTCVI--GTTGSGKSTMIQL 56 (289)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 357665555 8999999999764
No 373
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.88 E-value=32 Score=35.64 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|. .|||||||+|+-+
T Consensus 45 ~~Ge~~~I~--G~nGsGKSTLl~~ 66 (276)
T PRK14271 45 PARAVTSLM--GPTGSGKTTFLRT 66 (276)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468877777 8999999999754
No 374
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=32.85 E-value=31 Score=34.99 Aligned_cols=22 Identities=27% Similarity=0.193 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-|. .|||||||+|+-+
T Consensus 30 ~~Ge~~~i~--G~nGsGKSTLl~~ 51 (258)
T PRK11701 30 YPGEVLGIV--GESGSGKTTLLNA 51 (258)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 357776666 8999999999764
No 375
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=32.81 E-value=30 Score=38.83 Aligned_cols=21 Identities=29% Similarity=0.270 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
..|+..-+. .|||||||+|.-
T Consensus 24 ~~Ge~~~ii--G~nGsGKSTLl~ 44 (520)
T TIGR03269 24 EEGEVLGIL--GRSGAGKSVLMH 44 (520)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 468777666 899999999864
No 376
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=32.78 E-value=32 Score=37.60 Aligned_cols=20 Identities=40% Similarity=0.524 Sum_probs=14.4
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+.|+. ++-..|||||||+|.
T Consensus 29 ~~Ge~--~~llGpsGsGKSTLL 48 (362)
T TIGR03258 29 EAGEL--LALIGKSGCGKTTLL 48 (362)
T ss_pred CCCCE--EEEECCCCCCHHHHH
Confidence 34654 445589999999974
No 377
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=32.77 E-value=26 Score=40.78 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=20.5
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|++.-|. .|||||||+|+-+.
T Consensus 486 l~i~~G~~iaIv--G~sGsGKSTLlklL 511 (694)
T TIGR03375 486 LTIRPGEKVAII--GRIGSGKSTLLKLL 511 (694)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHH
Confidence 444679887777 89999999998653
No 378
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.69 E-value=33 Score=34.60 Aligned_cols=22 Identities=32% Similarity=0.396 Sum_probs=18.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||+|||+|+-+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (251)
T PRK14270 28 YENKITALI--GPSGCGKSTFLRC 49 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468887777 8999999999754
No 379
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=32.63 E-value=29 Score=40.87 Aligned_cols=25 Identities=32% Similarity=0.398 Sum_probs=19.8
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|++.=|. .|||||||+|+=+
T Consensus 502 l~i~~Ge~vaIv--G~SGsGKSTLl~l 526 (711)
T TIGR00958 502 FTLHPGEVVALV--GPSGSGKSTVAAL 526 (711)
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 344569888777 8999999998754
No 380
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=32.50 E-value=30 Score=34.53 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=23.2
Q ss_pred EEEEEcCCcccchhhcc-cCCCC-CCceEEEeecceEE
Q psy17657 287 FVAAAFPSACGKTNLAM-LMPTL-YDWKVECVGDDIAW 322 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAM-l~p~~-pGwkve~VGDDIAW 322 (652)
.++-..|+|||||+|.- +...+ +..++-++..|+..
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~~~~~~~d~~~ 40 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQLAVITNDIYT 40 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCcEEEEeCCcCC
Confidence 45666889999999863 11221 34567777777764
No 381
>KOG1970|consensus
Probab=32.48 E-value=19 Score=42.27 Aligned_cols=29 Identities=17% Similarity=0.504 Sum_probs=22.5
Q ss_pred CcEEEEEEEcCCcccchhhcccCCCCCCceE
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMPTLYDWKV 313 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkv 313 (652)
++.-+++ .|||||||++.=+....=|+++
T Consensus 110 ~~iLLlt--GPsGcGKSTtvkvLskelg~~~ 138 (634)
T KOG1970|consen 110 SRILLLT--GPSGCGKSTTVKVLSKELGYQL 138 (634)
T ss_pred ceEEEEe--CCCCCCchhHHHHHHHhhCcee
Confidence 6788888 7999999988655555667665
No 382
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=32.46 E-value=33 Score=32.95 Aligned_cols=22 Identities=27% Similarity=0.178 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 24 ~~G~~~~i~--G~nGsGKSTLl~~ 45 (182)
T cd03215 24 RAGEIVGIA--GLVGNGQTELAEA 45 (182)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999999754
No 383
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=32.44 E-value=33 Score=34.32 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+.+-|. .|||||||+|.-+
T Consensus 23 ~~Ge~~~i~--G~nG~GKStLl~~ 44 (235)
T cd03299 23 ERGDYFVIL--GPTGSGKSVLLET 44 (235)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 358777777 8999999999764
No 384
>PRK08068 transaminase; Reviewed
Probab=32.38 E-value=2.1e+02 Score=30.64 Aligned_cols=108 Identities=13% Similarity=0.188 Sum_probs=62.1
Q ss_pred CHHHHHHHHHHHh----h-cCCC-eEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEec
Q psy17657 38 SPKLLKFITESAN----L-CKPK-DIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTV 111 (652)
Q Consensus 38 ~~~v~~~V~e~a~----L-~~P~-~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~ 111 (652)
.+++++.|++... + ++|+ .|.+..|+.+....+...+++.|..+=+.. | +| ......++.-.-+++-.+
T Consensus 72 ~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~~~~gd~vlv~~-P-~y---~~~~~~~~~~g~~~~~i~ 146 (389)
T PRK08068 72 YPFLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCLMNPGDTILVPD-P-GY---PDYLSGVALARAQFETMP 146 (389)
T ss_pred CHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHhCCCCCEEEEcC-C-CC---cchHHHHHhcCCEEEEee
Confidence 4677777777652 2 7898 799999999999988888888775443321 2 22 122334444443333222
Q ss_pred CCCCcCCCCCCCccCccccc-CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCc
Q psy17657 112 NRSDVVPDHKPGVKSQLGNW-ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSK 170 (652)
Q Consensus 112 ~~~da~p~~~~Gv~~~l~nw-~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~ 170 (652)
-..+ .+| ++.+++.+.+.+. =|-+|+. .---|.|.-+++
T Consensus 147 ~~~~-------------~~~~~d~~~l~~~~~~~------~~~v~l~-~P~NPTG~~~s~ 186 (389)
T PRK08068 147 LIAE-------------NNFLPDYTKIPEEVAEK------AKLMYLN-YPNNPTGAVATK 186 (389)
T ss_pred cccc-------------cCCCCCHHHHHHhcccc------ceEEEEE-CCCCCCCCcCCH
Confidence 1111 023 4666776666431 2456665 224677776664
No 385
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=32.28 E-value=28 Score=34.13 Aligned_cols=25 Identities=28% Similarity=0.444 Sum_probs=18.9
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+=..|+..-+. .|||||||+|+.+.
T Consensus 20 ~i~~Ge~~~i~--G~nGsGKSTLl~~l 44 (213)
T TIGR01277 20 NVADGEIVAIM--GPSGAGKSTLLNLI 44 (213)
T ss_pred EEeCCcEEEEE--CCCCCCHHHHHHHH
Confidence 33458777776 89999999998753
No 386
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=32.26 E-value=26 Score=34.71 Aligned_cols=21 Identities=33% Similarity=0.524 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|...-|+ .|+|+|||.||+
T Consensus 14 ~~g~~~li~--G~~G~GKt~~~~ 34 (224)
T TIGR03880 14 PEGHVIVVI--GEYGTGKTTFSL 34 (224)
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 457676666 489999999987
No 387
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=32.10 E-value=34 Score=35.24 Aligned_cols=22 Identities=27% Similarity=0.406 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 48 ~~Ge~~~I~--G~nGsGKSTLl~~ 69 (271)
T PRK14238 48 HENEVTAII--GPSGCGKSTYIKT 69 (271)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468877777 8999999999754
No 388
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=32.05 E-value=15 Score=44.34 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=31.4
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeC
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFD 326 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~ 326 (652)
.|+.+|+-=.--|--+.|||+|||-||=-.. -..-||+.|-+|||
T Consensus 512 aGL~dp~rPigsFlF~GPTGVGKTELAkaLA------~~Lfg~e~aliR~D 556 (786)
T COG0542 512 AGLGDPNRPIGSFLFLGPTGVGKTELAKALA------EALFGDEQALIRID 556 (786)
T ss_pred cCCCCCCCCceEEEeeCCCcccHHHHHHHHH------HHhcCCCccceeec
Confidence 4777776322233445899999999986332 15668999999997
No 389
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=31.87 E-value=21 Score=36.50 Aligned_cols=33 Identities=21% Similarity=0.191 Sum_probs=24.5
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEe
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECV 316 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~V 316 (652)
|.|+.|.|.+| |+|||++|+..-. .-|.+|-+|
T Consensus 1 M~iI~v~n~KG-----------GvGKTT~a~nLA~~la~~G~~Vlli 36 (231)
T PRK13849 1 MKLLTFCSFKG-----------GAGKTTALMGLCAALASDGKRVALF 36 (231)
T ss_pred CeEEEEECCCC-----------CccHHHHHHHHHHHHHhCCCcEEEE
Confidence 77889999998 8999999886432 256666444
No 390
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.84 E-value=27 Score=34.22 Aligned_cols=19 Identities=21% Similarity=0.093 Sum_probs=14.2
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
..++-..|||||||+|+-+
T Consensus 24 e~~~i~G~nGsGKSTLl~~ 42 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRC 42 (214)
T ss_pred eeEEEECCCCCCHHHHHHH
Confidence 4445558999999998754
No 391
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=31.76 E-value=33 Score=34.44 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
..|+..-+. .|||||||+|.-+.
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~i 49 (250)
T PRK14240 27 EENQVTALI--GPSGCGKSTFLRTL 49 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 357776666 89999999997543
No 392
>PRK13975 thymidylate kinase; Provisional
Probab=31.68 E-value=28 Score=33.35 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.3
Q ss_pred EEEEEEcCCcccchhhcccC
Q psy17657 286 MFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~ 305 (652)
.+|+--.|.|||||++|-+.
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L 22 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLL 22 (196)
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46777789999999998753
No 393
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=31.58 E-value=35 Score=34.02 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=16.5
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-++ .|||||||+|.-+
T Consensus 30 ~Ge~~~i~--G~nGsGKSTLl~~ 50 (237)
T PRK11614 30 QGEIVTLI--GANGAGKTTLLGT 50 (237)
T ss_pred CCcEEEEE--CCCCCCHHHHHHH
Confidence 58776666 8999999998643
No 394
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=31.53 E-value=34 Score=34.61 Aligned_cols=22 Identities=36% Similarity=0.611 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 26 ~~Ge~~~l~--G~nGsGKSTLl~~ 47 (255)
T PRK11231 26 PTGKITALI--GPNGCGKSTLLKC 47 (255)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 358777676 8999999999764
No 395
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=31.52 E-value=36 Score=33.86 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 23 ~~Ge~~~l~--G~nGsGKSTLl~~ 44 (232)
T PRK10771 23 ERGERVAIL--GPSGAGKSTLLNL 44 (232)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 357776666 8999999999653
No 396
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=31.48 E-value=31 Score=34.11 Aligned_cols=20 Identities=10% Similarity=0.218 Sum_probs=15.4
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++-.++. .|+|||||.||-.
T Consensus 42 ~~~~~l~--G~~G~GKT~La~a 61 (227)
T PRK08903 42 DRFFYLW--GEAGSGRSHLLQA 61 (227)
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 4455666 7999999999865
No 397
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=31.45 E-value=19 Score=34.37 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=25.9
Q ss_pred cCCcccchhhcc-cCCCCCCceEEEeecceEEEEeCCCccEE
Q psy17657 292 FPSACGKTNLAM-LMPTLYDWKVECVGDDIAWMKFDEEGNLR 332 (652)
Q Consensus 292 FPSaCGKTnlAM-l~p~~pGwkve~VGDDIAWmr~~~dGrl~ 332 (652)
.++|||||+|.- +....+|+++-++-+|...+.+ |+.+.
T Consensus 7 G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~--d~~~~ 46 (158)
T cd03112 7 GFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGI--DNQLV 46 (158)
T ss_pred ECCCCCHHHHHHHHHhcccCCcEEEEecCCCccch--hHHHH
Confidence 688999999754 2233468888777777766644 44433
No 398
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=31.28 E-value=22 Score=39.34 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=26.1
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEe
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECV 316 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~V 316 (652)
+|.|+.|.|.+| |+|||++|+.... .-|.||=+|
T Consensus 120 ~~~vIav~n~KG-----------GvGKTTta~nLA~~LA~~G~rVLlI 156 (405)
T PRK13869 120 HLQVIAVTNFKG-----------GSGKTTTSAHLAQYLALQGYRVLAV 156 (405)
T ss_pred CceEEEEEcCCC-----------CCCHHHHHHHHHHHHHhcCCceEEE
Confidence 888888998887 8999998774332 368887655
No 399
>PHA02518 ParA-like protein; Provisional
Probab=31.28 E-value=25 Score=33.77 Aligned_cols=34 Identities=35% Similarity=0.409 Sum_probs=24.4
Q ss_pred EeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecc
Q psy17657 275 ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDD 319 (652)
Q Consensus 275 Ilgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDD 319 (652)
|+.|.|++| |+|||++|..... ..|+||-+|=-|
T Consensus 2 ii~v~~~KG-----------GvGKTT~a~~la~~la~~g~~vlliD~D 38 (211)
T PHA02518 2 IIAVLNQKG-----------GAGKTTVATNLASWLHADGHKVLLVDLD 38 (211)
T ss_pred EEEEEcCCC-----------CCCHHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 567788887 8999998875432 268888766544
No 400
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=31.23 E-value=29 Score=38.65 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+...+. .|||||||+|.-+
T Consensus 284 ~~Ge~~~i~--G~NGsGKSTLl~~ 305 (490)
T PRK10938 284 NPGEHWQIV--GPNGAGKSTLLSL 305 (490)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468887777 8999999999643
No 401
>PRK04040 adenylate kinase; Provisional
Probab=31.17 E-value=28 Score=34.41 Aligned_cols=16 Identities=25% Similarity=0.196 Sum_probs=10.9
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
|+-..++|||||+++-
T Consensus 5 i~v~G~pG~GKtt~~~ 20 (188)
T PRK04040 5 VVVTGVPGVGKTTVLN 20 (188)
T ss_pred EEEEeCCCCCHHHHHH
Confidence 3444677888888765
No 402
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=31.15 E-value=40 Score=33.88 Aligned_cols=21 Identities=19% Similarity=0.305 Sum_probs=16.1
Q ss_pred eCCCCcEEEEEEEcCCcccchhh
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNL 301 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnl 301 (652)
+..+|+..-++ .||+||||+|
T Consensus 25 ~~~~~~~~~l~--G~n~~GKstl 45 (204)
T cd03282 25 TRGSSRFHIIT--GPNMSGKSTY 45 (204)
T ss_pred eeCCCcEEEEE--CCCCCCHHHH
Confidence 44456777776 8999999996
No 403
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=31.07 E-value=31 Score=34.60 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=16.4
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|.-+
T Consensus 29 ~Ge~~~i~--G~nGsGKSTLl~~ 49 (252)
T PRK14272 29 RGTVNALI--GPSGCGKTTFLRA 49 (252)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 47776555 8999999999754
No 404
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=31.02 E-value=36 Score=35.19 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=16.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.=+
T Consensus 29 ~~Ge~~~i~--G~nGsGKSTLl~~ 50 (274)
T PRK13647 29 PEGSKTALL--GPNGAGKSTLLLH 50 (274)
T ss_pred cCCCEEEEE--CCCCCcHHHHHHH
Confidence 357666555 8999999998643
No 405
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=31.02 E-value=16 Score=34.51 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=18.4
Q ss_pred cCCcccchhhcccCCC-C--CCceEEEee
Q psy17657 292 FPSACGKTNLAMLMPT-L--YDWKVECVG 317 (652)
Q Consensus 292 FPSaCGKTnlAMl~p~-~--pGwkve~VG 317 (652)
.+||||||+||...-. + +|+++..+.
T Consensus 6 G~~GsGKSTla~~L~~~l~~~g~~~~~i~ 34 (149)
T cd02027 6 GLSGSGKSTIARALEEKLFQRGRPVYVLD 34 (149)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 7899999999875432 3 587765543
No 406
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=31.01 E-value=36 Score=34.53 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=18.2
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=+.|+..-+. .|||||||+|.-+
T Consensus 18 ~i~~Gei~~l~--G~nGsGKSTLl~~ 41 (248)
T PRK03695 18 EVRAGEILHLV--GPNGAGKSTLLAR 41 (248)
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 33468777666 8999999998654
No 407
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=30.99 E-value=39 Score=33.91 Aligned_cols=21 Identities=33% Similarity=0.479 Sum_probs=16.6
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
..|+..-++ .|||||||+|.-
T Consensus 24 ~~Ge~~~l~--G~nGsGKSTLl~ 44 (237)
T TIGR00968 24 PTGSLVALL--GPSGSGKSTLLR 44 (237)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 358777776 899999999853
No 408
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=30.96 E-value=35 Score=35.75 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 17 ~~Ge~~~l~--G~NGaGKSTLl~~ 38 (302)
T TIGR01188 17 REGEVFGFL--GPNGAGKTTTIRM 38 (302)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 468776666 7999999998643
No 409
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=30.92 E-value=33 Score=38.42 Aligned_cols=21 Identities=24% Similarity=0.145 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.=
T Consensus 287 ~~Ge~~~l~--G~NGsGKSTLlk 307 (510)
T PRK09700 287 CRGEILGFA--GLVGSGRTELMN 307 (510)
T ss_pred cCCcEEEEE--CCCCCCHHHHHH
Confidence 468877776 899999999864
No 410
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=30.90 E-value=37 Score=34.93 Aligned_cols=21 Identities=29% Similarity=0.430 Sum_probs=17.4
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-|. .|||||||+|+-+
T Consensus 50 ~Ge~~~I~--G~nGsGKSTLl~~ 70 (272)
T PRK14236 50 KNRVTAFI--GPSGCGKSTLLRC 70 (272)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 58777777 8999999999754
No 411
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=30.83 E-value=34 Score=38.04 Aligned_cols=39 Identities=28% Similarity=0.296 Sum_probs=25.2
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecceE
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDIA 321 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDIA 321 (652)
=+.|+..-+. .|||||||+|.-+ .++..| +|.+=|.||.
T Consensus 51 i~~Gei~~Lv--G~NGsGKSTLLr~I~Gl~~p~sG-~I~i~G~~i~ 93 (400)
T PRK10070 51 IEEGEIFVIM--GLSGSGKSTMVRLLNRLIEPTRG-QVLIDGVDIA 93 (400)
T ss_pred EcCCCEEEEE--CCCCchHHHHHHHHHcCCCCCCC-EEEECCEECC
Confidence 3568777666 8999999998643 244456 3444454543
No 412
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=30.78 E-value=35 Score=34.80 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 26 ~~Ge~~~i~--G~nGsGKSTLl~~ 47 (258)
T PRK13548 26 RPGEVVAIL--GPNGAGKSTLLRA 47 (258)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 357776666 8999999998743
No 413
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=30.76 E-value=36 Score=34.47 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|+-+
T Consensus 25 ~~Ge~~~i~--G~nGsGKSTLl~~ 46 (256)
T TIGR03873 25 PPGSLTGLL--GPNGSGKSTLLRL 46 (256)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 358777776 8999999999754
No 414
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=30.76 E-value=33 Score=32.89 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=20.5
Q ss_pred CcEEEEEEEcCCcccchhhcccCCC---CCCceEEE-eecce
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVEC-VGDDI 320 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~-VGDDI 320 (652)
|....++ .+||||||++|=.... .+|+.+-. =||+|
T Consensus 18 ~~~i~i~--G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~ 57 (184)
T TIGR00455 18 GVVIWLT--GLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57 (184)
T ss_pred CeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCcEEEECChHH
Confidence 4444444 7899999998754322 24655333 34443
No 415
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=30.72 E-value=33 Score=33.60 Aligned_cols=20 Identities=30% Similarity=0.426 Sum_probs=15.3
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+..-+. .|||||||+|.=
T Consensus 25 ~Ge~~~i~--G~nGsGKStLl~ 44 (200)
T cd03217 25 KGEVHALM--GPNGSGKSTLAK 44 (200)
T ss_pred CCcEEEEE--CCCCCCHHHHHH
Confidence 47666555 899999998754
No 416
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=30.72 E-value=18 Score=36.52 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=22.2
Q ss_pred EcCCcccchhhcccCC-CC--CCceEEEeecce
Q psy17657 291 AFPSACGKTNLAMLMP-TL--YDWKVECVGDDI 320 (652)
Q Consensus 291 AFPSaCGKTnlAMl~p-~~--pGwkve~VGDDI 320 (652)
..++|||||++|...- .+ .|++|..+++|.
T Consensus 5 ~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~ 37 (249)
T TIGR03574 5 TGLPGVGKSTFSKELAKKLSEKNIDVIILGTDL 37 (249)
T ss_pred EcCCCCCHHHHHHHHHHHHHHcCCceEEEccHH
Confidence 4688999999997432 22 478888888774
No 417
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=30.68 E-value=31 Score=33.34 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=12.2
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
|.-..|||+||++++-
T Consensus 5 ivl~Gpsg~GK~tl~~ 20 (184)
T smart00072 5 IVLSGPSGVGKGTLLA 20 (184)
T ss_pred EEEECCCCCCHHHHHH
Confidence 3444899999999864
No 418
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=30.61 E-value=37 Score=34.12 Aligned_cols=20 Identities=25% Similarity=0.280 Sum_probs=15.9
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+.|+..-+. .|||||||+|+
T Consensus 45 ~~Ge~~~i~--G~NGsGKSTLl 64 (236)
T cd03267 45 EKGEIVGFI--GPNGAGKTTTL 64 (236)
T ss_pred cCCCEEEEE--CCCCCCHHHHH
Confidence 357776666 89999999985
No 419
>PLN02772 guanylate kinase
Probab=30.50 E-value=31 Score=38.82 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=14.0
Q ss_pred cEEEEEEEcCCcccchhhc
Q psy17657 284 KKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlA 302 (652)
+.+-+.-+.||||||++|.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~ 152 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLI 152 (398)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3344555699999999975
No 420
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=30.35 E-value=33 Score=39.17 Aligned_cols=26 Identities=27% Similarity=0.476 Sum_probs=19.6
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|++.=+. .|||||||+|+-+.
T Consensus 361 ~~i~~G~~~aiv--G~sGsGKSTL~~ll 386 (574)
T PRK11160 361 LQIKAGEKVALL--GRTGCGKSTLLQLL 386 (574)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHHH
Confidence 334568887777 89999999987653
No 421
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=30.32 E-value=26 Score=33.91 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=17.1
Q ss_pred EEEEcCCcccchhhcccCCCCCCc
Q psy17657 288 VAAAFPSACGKTNLAMLMPTLYDW 311 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~p~~pGw 311 (652)
|.--.|+|||||++|-+..-.-|+
T Consensus 7 I~liG~~GaGKStl~~~La~~l~~ 30 (172)
T PRK05057 7 IFLVGPMGAGKSTIGRQLAQQLNM 30 (172)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCC
Confidence 444589999999998765533444
No 422
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=30.29 E-value=34 Score=40.02 Aligned_cols=22 Identities=23% Similarity=0.188 Sum_probs=17.0
Q ss_pred CCCCcEEEEEEEcCCcccchhhcc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
=+.|+++=+. .|||||||+|.=
T Consensus 344 ~~~g~~talv--G~SGaGKSTLl~ 365 (559)
T COG4988 344 IKAGQLTALV--GASGAGKSTLLN 365 (559)
T ss_pred ecCCcEEEEE--CCCCCCHHHHHH
Confidence 3568877666 799999999854
No 423
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=30.26 E-value=34 Score=33.37 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=15.4
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++-.++. .|+|||||.||..
T Consensus 38 ~~~lll~--G~~G~GKT~la~~ 57 (226)
T TIGR03420 38 DRFLYLW--GESGSGKSHLLQA 57 (226)
T ss_pred CCeEEEE--CCCCCCHHHHHHH
Confidence 4455666 5999999999874
No 424
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.23 E-value=37 Score=34.47 Aligned_cols=22 Identities=27% Similarity=0.387 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.=+
T Consensus 31 ~~Ge~~~l~--G~nGsGKSTLlk~ 52 (259)
T PRK14260 31 YRNKVTAII--GPSGCGKSTFIKT 52 (259)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358777776 8999999998643
No 425
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=30.17 E-value=26 Score=38.67 Aligned_cols=35 Identities=26% Similarity=0.263 Sum_probs=26.7
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEee
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVG 317 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VG 317 (652)
++.|+.|.|.+| |+|||++|..... .-|+||=+|=
T Consensus 105 ~~~vIav~n~KG-----------GVGKTTta~nLA~~LA~~G~rVLlID 142 (387)
T PHA02519 105 NPVVLAVMSHKG-----------GVYKTSSAVHTAQWLALQGHRVLLIE 142 (387)
T ss_pred CceEEEEecCCC-----------CCcHHHHHHHHHHHHHhCCCcEEEEe
Confidence 688888888888 8999998774332 4799986664
No 426
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=30.01 E-value=23 Score=37.02 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=16.7
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
|-++.+-+++| |+|||+++|+.
T Consensus 1 M~vItf~s~KG-----------GaGKTT~~~~L 22 (231)
T PF07015_consen 1 MPVITFASSKG-----------GAGKTTAAMAL 22 (231)
T ss_pred CCeEEEecCCC-----------CCcHHHHHHHH
Confidence 55566666666 89999999973
No 427
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.90 E-value=39 Score=34.45 Aligned_cols=22 Identities=27% Similarity=0.384 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-|. .|||||||+|.-+
T Consensus 40 ~~Ge~~~i~--G~nGsGKSTLl~~ 61 (265)
T PRK14252 40 HEKQVTALI--GPSGCGKSTFLRC 61 (265)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 358877777 8999999999654
No 428
>CHL00195 ycf46 Ycf46; Provisional
Probab=29.88 E-value=25 Score=40.27 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=28.4
Q ss_pred CCccccccccchhhhhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 249 GYGGNSLLGKKCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 249 gYGGNaLLGKKcfALRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.-||.--+ |+-+.-|. .....+..-.|+..|+|-..| .|+|||||.+|=.
T Consensus 229 dvgGl~~l-K~~l~~~~-~~~~~~~~~~gl~~pkGILL~----GPpGTGKTllAka 278 (489)
T CHL00195 229 DIGGLDNL-KDWLKKRS-TSFSKQASNYGLPTPRGLLLV----GIQGTGKSLTAKA 278 (489)
T ss_pred HhcCHHHH-HHHHHHHH-HHhhHHHHhcCCCCCceEEEE----CCCCCcHHHHHHH
Confidence 45676543 33222222 122223334577788774443 8999999988754
No 429
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.83 E-value=40 Score=33.87 Aligned_cols=23 Identities=26% Similarity=0.509 Sum_probs=18.0
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|+..-+. .|||||||+|+-+.
T Consensus 27 ~~Ge~~~i~--G~nGsGKSTLl~~l 49 (250)
T PRK14266 27 PKNSVTALI--GPSGCGKSTFIRTL 49 (250)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 458777666 89999999997543
No 430
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=29.68 E-value=28 Score=34.57 Aligned_cols=42 Identities=21% Similarity=0.479 Sum_probs=24.0
Q ss_pred CcEEEEEEEcCCcccchhhccc-CCCCCCceEEEeecceEEEEeCCCccEEEeCC
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML-MPTLYDWKVECVGDDIAWMKFDEEGNLRAINP 336 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl-~p~~pGwkve~VGDDIAWmr~~~dGrl~AINP 336 (652)
|+..++- .||.+|||++|-. +..+++ -|+.+.-|.-..++-|
T Consensus 1 g~iI~LN--G~sSSGKSsia~~Lq~~~~~----------p~~~l~~D~f~~~~~~ 43 (174)
T PF07931_consen 1 GQIIILN--GPSSSGKSSIARALQERLPE----------PWLHLSVDTFVDMMPP 43 (174)
T ss_dssp --EEEEE--E-TTSSHHHHHHHHHHHSSS-----------EEEEEHHHHHHHS-G
T ss_pred CeEEEEe--CCCCCCHHHHHHHHHHhCcC----------CeEEEecChHHhhcCc
Confidence 4555666 6899999999973 332332 5777776665554443
No 431
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=29.65 E-value=35 Score=37.35 Aligned_cols=20 Identities=30% Similarity=0.316 Sum_probs=14.6
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+|+..=+. .=||||||.||+
T Consensus 30 ~GE~lgiV--GESGsGKS~~~~ 49 (316)
T COG0444 30 KGEILGIV--GESGSGKSVLAK 49 (316)
T ss_pred CCcEEEEE--cCCCCCHHHHHH
Confidence 45554444 679999999987
No 432
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=29.51 E-value=41 Score=33.51 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=16.1
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+..-+. .|||||||+|.-
T Consensus 27 ~Ge~~~l~--G~nGsGKSTLl~ 46 (242)
T TIGR03411 27 PGELRVII--GPNGAGKTTMMD 46 (242)
T ss_pred CCcEEEEE--CCCCCCHHHHHH
Confidence 57776666 899999999864
No 433
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=29.46 E-value=28 Score=33.81 Aligned_cols=19 Identities=26% Similarity=0.359 Sum_probs=13.2
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
|+..-| +.|+|||||+|+-
T Consensus 25 g~~i~I--~G~tGSGKTTll~ 43 (186)
T cd01130 25 RKNILI--SGGTGSGKTTLLN 43 (186)
T ss_pred CCEEEE--ECCCCCCHHHHHH
Confidence 544433 4699999999743
No 434
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=29.46 E-value=32 Score=39.93 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|+..-+. .|||||||+|+.+.
T Consensus 40 ~~Ge~~~lv--G~nGsGKSTLl~~l 62 (623)
T PRK10261 40 QRGETLAIV--GESGSGKSVTALAL 62 (623)
T ss_pred CCCCEEEEE--CCCCChHHHHHHHH
Confidence 458776555 89999999998744
No 435
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.45 E-value=38 Score=34.08 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~~ 50 (252)
T PRK14255 29 NQNEITALI--GPSGCGKSTYLRT 50 (252)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 358776666 8999999999765
No 436
>PRK14530 adenylate kinase; Provisional
Probab=29.43 E-value=22 Score=35.25 Aligned_cols=43 Identities=23% Similarity=0.387 Sum_probs=30.5
Q ss_pred hhHHHhhccChHHHHHHHHHHHHHHhhh-----h-CCCCCHHHHHHHHH
Q psy17657 590 VNLKELFYIDKDFWEQELNAIEKYFNDQ-----V-GSDLPPAIHAEISG 632 (652)
Q Consensus 590 ~~~~~l~~v~~~~W~~E~~~i~~~~~~~-----~-g~~lP~~i~~~l~~ 632 (652)
.|-++.+.-+-..|.++.+.+.+||.++ + |..-|.++++.+.+
T Consensus 161 dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~ 209 (215)
T PRK14530 161 DDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQD 209 (215)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHH
Confidence 4567788888889999999999999753 1 44455555555443
No 437
>PRK07550 hypothetical protein; Provisional
Probab=29.41 E-value=3.4e+02 Score=29.00 Aligned_cols=108 Identities=13% Similarity=0.130 Sum_probs=64.8
Q ss_pred CCHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEec
Q psy17657 37 VSPKLLKFITESAN-----LCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTV 111 (652)
Q Consensus 37 l~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~ 111 (652)
-.+++++.+++... -+.|+.|++..|+.+=...+.+.+++.|..+=+.. | +| ......++...-+++-.+
T Consensus 68 G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~-p-~y---~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 68 GLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTLAGAGDEVILPL-P-WY---FNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhcCCCCEEEEcC-C-CC---cchHHHHHhcCCEEEEEe
Confidence 36778877777654 27899999999998888888888877776544432 2 22 222335555555555544
Q ss_pred CCCCcCCCCCCCccCccccc-CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCC
Q psy17657 112 NRSDVVPDHKPGVKSQLGNW-ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLS 169 (652)
Q Consensus 112 ~~~da~p~~~~Gv~~~l~nw-~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s 169 (652)
-.++ .+| .+++++++.+++ +-|-.|++.-+ -|.|.-++
T Consensus 143 ~~~~-------------~~~~~~~~~l~~~~~~------~~~~v~~~~P~-NPtG~~~~ 181 (386)
T PRK07550 143 CDEG-------------PGLLPDPAAAEALITP------RTRAIALVTPN-NPTGVVYP 181 (386)
T ss_pred cCCC-------------cCCCCCHHHHHHHhcc------cCcEEEEeCCC-CCCCcccC
Confidence 3211 134 467777777754 23444555433 46555443
No 438
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=29.39 E-value=22 Score=38.29 Aligned_cols=30 Identities=30% Similarity=0.326 Sum_probs=20.0
Q ss_pred EEEEcCCcccchhhcccCCCCCCceEEEeecce
Q psy17657 288 VAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDI 320 (652)
|+-..|.|||||.||.-..--.| |+|+-|-
T Consensus 7 i~I~GpTasGKS~LAl~LA~~~~---eIIsaDS 36 (300)
T PRK14729 7 VFIFGPTAVGKSNILFHFPKGKA---EIINVDS 36 (300)
T ss_pred EEEECCCccCHHHHHHHHHHhCC---cEEeccH
Confidence 44458999999999984332233 6666554
No 439
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=29.38 E-value=33 Score=35.09 Aligned_cols=22 Identities=41% Similarity=0.555 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|. .|||||||+|.-+
T Consensus 35 ~~Ge~~~i~--G~nGsGKSTLl~~ 56 (265)
T TIGR02769 35 EEGETVGLL--GRSGCGKSTLARL 56 (265)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457776666 8999999999754
No 440
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=29.31 E-value=28 Score=32.66 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=19.3
Q ss_pred EEEEEcCCcccchhhcccCC-CC--CCceEEEee
Q psy17657 287 FVAAAFPSACGKTNLAMLMP-TL--YDWKVECVG 317 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~p-~~--pGwkve~VG 317 (652)
+|+--.|.|||||++|-+.- -+ .|++|.+++
T Consensus 2 ~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 2 FIVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 34555789999999987532 11 355554444
No 441
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=29.30 E-value=33 Score=39.32 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=18.9
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|++.-|. .|||||||+|+-+.
T Consensus 359 ~~G~~~~iv--G~sGsGKSTL~~ll 381 (585)
T TIGR01192 359 KAGQTVAIV--GPTGAGKTTLINLL 381 (585)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 468888777 89999999998654
No 442
>PTZ00377 alanine aminotransferase; Provisional
Probab=29.29 E-value=1.8e+02 Score=32.59 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=66.3
Q ss_pred CCHHHHHHHHHHHhh-----cCCCeEEEEcCCHHHHHHHHHHHH-hcCcccccccccCeEEeccCCCCccccccceEEEe
Q psy17657 37 VSPKLLKFITESANL-----CKPKDIHICDGTEEENKAILKKMV-DTNTVKRVRKHVNCWLASTNPADVARVEDKTFICT 110 (652)
Q Consensus 37 l~~~v~~~V~e~a~L-----~~P~~I~icdGS~eE~~~l~~~~~-~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t 110 (652)
-.+++++.|++...- ++|+.|++..|+.+=...+.+.++ +.|..+=+.. | +|. .....++.-..+.+..
T Consensus 116 G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~Vlv~~-P-~y~---~y~~~~~~~g~~~v~v 190 (481)
T PTZ00377 116 GYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDGVMIPI-P-QYP---LYSAAITLLGGKQVPY 190 (481)
T ss_pred CCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCEEEECC-C-Cch---hHHHHHHHcCCEEEEE
Confidence 356788888887653 799999999999999999999888 5775443321 1 221 1123444444444443
Q ss_pred cCCCCcCCCCCCCccCccccc-CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCC
Q psy17657 111 VNRSDVVPDHKPGVKSQLGNW-ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLS 169 (652)
Q Consensus 111 ~~~~da~p~~~~Gv~~~l~nw-~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s 169 (652)
+-.++ ++| ++++++++.+.+.-..-=+-|-+|++-. -=|.|.-++
T Consensus 191 ~~~~~-------------~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P-~NPTG~~~s 236 (481)
T PTZ00377 191 YLDEE-------------KGWSLDQEELEEAYEQAVRNGITPRALVVINP-GNPTGQVLT 236 (481)
T ss_pred Eeccc-------------cCCCCCHHHHHHHHHHHHhcCCCeeEEEEECC-CCCCCcCCC
Confidence 32221 134 5788888877542110001234566633 247777665
No 443
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=29.21 E-value=32 Score=35.30 Aligned_cols=35 Identities=17% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEee
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVG 317 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VG 317 (652)
-+|.+.+++ ..||+|||++|...-. .-|..+...=
T Consensus 21 ~~~~viW~T--GLSGsGKSTiA~ale~~L~~~G~~~y~LD 58 (197)
T COG0529 21 QKGAVIWFT--GLSGSGKSTIANALEEKLFAKGYHVYLLD 58 (197)
T ss_pred CCCeEEEee--cCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 357889999 7999999999986543 2788887763
No 444
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=29.03 E-value=40 Score=35.08 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
..|+..-+. .|||||||+|.=
T Consensus 63 ~~Ge~~~l~--G~nGsGKSTLl~ 83 (286)
T PRK14275 63 LSKYVTAII--GPSGCGKSTFLR 83 (286)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 358777777 899999999863
No 445
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=28.87 E-value=39 Score=36.75 Aligned_cols=38 Identities=26% Similarity=0.252 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecceE
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDIA 321 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDIA 321 (652)
+.|+..=|. .|||||||+|.-+ .++..| +|.+-|-||.
T Consensus 29 ~~Gei~gIi--G~sGaGKSTLlr~I~gl~~p~~G-~I~i~G~~i~ 70 (343)
T TIGR02314 29 PAGQIYGVI--GASGAGKSTLIRCVNLLERPTSG-SVIVDGQDLT 70 (343)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHHhcCCCCCce-EEEECCEECC
Confidence 457665455 8999999998643 344455 3455455554
No 446
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=28.79 E-value=20 Score=36.94 Aligned_cols=15 Identities=47% Similarity=0.600 Sum_probs=12.6
Q ss_pred cCCcccchhhcccCC
Q psy17657 292 FPSACGKTNLAMLMP 306 (652)
Q Consensus 292 FPSaCGKTnlAMl~p 306 (652)
.|+|||||.||....
T Consensus 28 G~~GtGKT~lA~~la 42 (262)
T TIGR02640 28 GPAGTGKTTLAMHVA 42 (262)
T ss_pred cCCCCCHHHHHHHHH
Confidence 489999999998644
No 447
>PRK04182 cytidylate kinase; Provisional
Probab=28.76 E-value=30 Score=32.28 Aligned_cols=19 Identities=32% Similarity=0.524 Sum_probs=14.6
Q ss_pred EEEEcCCcccchhhcccCC
Q psy17657 288 VAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~p 306 (652)
|+-..++|||||++|-..-
T Consensus 3 I~i~G~~GsGKstia~~la 21 (180)
T PRK04182 3 ITISGPPGSGKTTVARLLA 21 (180)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 4455789999999987654
No 448
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.71 E-value=41 Score=35.06 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=16.9
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-|. .|||||||+|.-+
T Consensus 64 ~Ge~~~I~--G~nGsGKSTLl~~ 84 (285)
T PRK14254 64 ENQVTAMI--GPSGCGKSTFLRC 84 (285)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 58777777 8999999999643
No 449
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=28.70 E-value=42 Score=33.50 Aligned_cols=21 Identities=48% Similarity=0.676 Sum_probs=17.0
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-++ .|||||||+|.-+
T Consensus 25 ~Ge~~~i~--G~nGsGKSTLl~~ 45 (232)
T cd03300 25 EGEFFTLL--GPSGCGKTTLLRL 45 (232)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 48887777 8999999998643
No 450
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=28.70 E-value=30 Score=38.94 Aligned_cols=45 Identities=27% Similarity=0.415 Sum_probs=25.3
Q ss_pred cccccchhhhhhhhccccceeEeeeeCC--CCcEEEEEEEcCCcccchhhcccCC
Q psy17657 254 SLLGKKCFALRINQVKEPNNRILGVTNP--EGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 254 aLLGKKcfALRiAS~~arHMlIlgvt~P--~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
-|.|.+. |=|.|-.+.. | |..- .||-.-++ .|+|||||-|||-..
T Consensus 25 GlVGQ~~-AReAagiiv~-m----Ik~~K~aGr~iLia--GppGtGKTAlA~~ia 71 (398)
T PF06068_consen 25 GLVGQEK-AREAAGIIVD-M----IKEGKIAGRAILIA--GPPGTGKTALAMAIA 71 (398)
T ss_dssp TEES-HH-HHHHHHHHHH-H----HHTT--TT-EEEEE--E-TTSSHHHHHHHHH
T ss_pred cccChHH-HHHHHHHHHH-H----HhcccccCcEEEEe--CCCCCCchHHHHHHH
Confidence 4778766 5554444333 1 1111 26665555 799999999999543
No 451
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=28.69 E-value=31 Score=36.19 Aligned_cols=35 Identities=23% Similarity=0.228 Sum_probs=22.6
Q ss_pred EEEEEEcCCcccchhhcccCCC-C--C-C-ceEEEeecce
Q psy17657 286 MFVAAAFPSACGKTNLAMLMPT-L--Y-D-WKVECVGDDI 320 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~p~-~--p-G-wkve~VGDDI 320 (652)
..|+-..|+|+|||+|+.-.-. + - | ++|-+|--|-
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3444458999999998764322 2 2 4 7887776553
No 452
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=28.65 E-value=42 Score=33.43 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+.+-+. .|||||||+|.-+
T Consensus 10 ~~Ge~~~i~--G~nGsGKSTLl~~ 31 (230)
T TIGR02770 10 KRGEVLALV--GESGSGKSLTCLA 31 (230)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 357777676 8999999999754
No 453
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=28.64 E-value=39 Score=39.31 Aligned_cols=24 Identities=17% Similarity=0.110 Sum_probs=18.4
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=++|+..-+. .|||||||+|+-
T Consensus 345 ~~i~~Ge~~~lv--G~nGsGKSTLlk 368 (623)
T PRK10261 345 FDLWPGETLSLV--GESGSGKSTTGR 368 (623)
T ss_pred eEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 333568877777 899999999864
No 454
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=28.62 E-value=40 Score=35.32 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 28 ~~Ge~~~l~--G~NGaGKSTLl~~ 49 (303)
T TIGR01288 28 ARGECFGLL--GPNGAGKSTIARM 49 (303)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 457766665 8999999998654
No 455
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=28.54 E-value=43 Score=33.05 Aligned_cols=21 Identities=33% Similarity=0.469 Sum_probs=16.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-|. .|||||||+|.=
T Consensus 29 ~~G~~~~I~--G~nGsGKStLl~ 49 (220)
T TIGR02982 29 NPGEIVILT--GPSGSGKTTLLT 49 (220)
T ss_pred cCCCEEEEE--CCCCCCHHHHHH
Confidence 457766666 899999999853
No 456
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=28.45 E-value=41 Score=35.34 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 61 ~~Ge~~~li--G~NGsGKSTLl~~ 82 (282)
T cd03291 61 EKGEMLAIT--GSTGSGKTSLLML 82 (282)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777776 8999999999764
No 457
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.41 E-value=42 Score=34.31 Aligned_cols=20 Identities=25% Similarity=0.389 Sum_probs=16.0
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+..-+. .|||||||+|.-
T Consensus 46 ~Ge~~~i~--G~nGsGKSTLl~ 65 (268)
T PRK14248 46 KHAVTALI--GPSGCGKSTFLR 65 (268)
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 57776666 899999999864
No 458
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.36 E-value=41 Score=34.99 Aligned_cols=22 Identities=23% Similarity=0.264 Sum_probs=16.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-|. .|||||||+|.=+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~ 52 (286)
T PRK13646 31 EQGKYYAIV--GQTGSGKSTLIQN 52 (286)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457766665 8999999998643
No 459
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=28.36 E-value=38 Score=38.21 Aligned_cols=18 Identities=22% Similarity=0.283 Sum_probs=14.9
Q ss_pred CCcEEEEEEEcCCcccchhh
Q psy17657 282 EGKKMFVAAAFPSACGKTNL 301 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnl 301 (652)
.|+.+-|. .|||||||+|
T Consensus 34 ~Ge~~~ii--G~nGsGKSTL 51 (529)
T PRK15134 34 AGETLALV--GESGSGKSVT 51 (529)
T ss_pred CCCEEEEE--CCCCCcHHHH
Confidence 58776666 8999999998
No 460
>PRK06761 hypothetical protein; Provisional
Probab=28.34 E-value=30 Score=36.95 Aligned_cols=18 Identities=17% Similarity=0.194 Sum_probs=14.0
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|.-..|+|||||++|-.
T Consensus 5 lIvI~G~~GsGKTTla~~ 22 (282)
T PRK06761 5 LIIIEGLPGFGKSTTAKM 22 (282)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455668999999998753
No 461
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=28.33 E-value=40 Score=37.81 Aligned_cols=37 Identities=11% Similarity=0.045 Sum_probs=23.6
Q ss_pred CCCcEEEEEEEcCCcccchhhcc----cCCCCCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM----LMPTLYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM----l~p~~pGwkve~VGDDI 320 (652)
++|+.+-+. .|||||||+|.= +.++..| +|.+=|.+|
T Consensus 29 ~~Ge~~~li--G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i 69 (510)
T PRK09700 29 YPGEIHALL--GENGAGKSTLMKVLSGIHEPTKG-TITINNINY 69 (510)
T ss_pred cCCcEEEEE--CCCCCCHHHHHHHHcCCcCCCcc-EEEECCEEC
Confidence 468777666 899999999853 2244456 244444444
No 462
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.32 E-value=41 Score=34.87 Aligned_cols=22 Identities=18% Similarity=0.241 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|.-+
T Consensus 31 ~~Ge~~~i~--G~nGsGKSTLl~~ 52 (279)
T PRK13650 31 KQGEWLSII--GHNGSGKSTTVRL 52 (279)
T ss_pred eCCCEEEEE--CCCCCCHHHHHHH
Confidence 357776666 8999999999654
No 463
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.32 E-value=37 Score=34.10 Aligned_cols=22 Identities=27% Similarity=0.421 Sum_probs=17.4
Q ss_pred CCcEEEEEEEcCCcccchhhcccC
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
.|+..-+. .|||||||+|+-+.
T Consensus 28 ~Ge~~~i~--G~nGsGKSTLl~~l 49 (249)
T PRK14253 28 ARQVTALI--GPSGCGKSTLLRCL 49 (249)
T ss_pred CCCEEEEE--CCCCCCHHHHHHHH
Confidence 47776666 89999999998653
No 464
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=28.30 E-value=32 Score=37.56 Aligned_cols=21 Identities=38% Similarity=0.719 Sum_probs=18.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|+.+-|++ |++||||+||+
T Consensus 51 p~G~ivEi~G--~~ssGKttLaL 71 (322)
T PF00154_consen 51 PRGRIVEIYG--PESSGKTTLAL 71 (322)
T ss_dssp ETTSEEEEEE--STTSSHHHHHH
T ss_pred ccCceEEEeC--CCCCchhhhHH
Confidence 6799998885 78999999987
No 465
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.20 E-value=43 Score=35.30 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=18.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+...|. .|||||||+|.-+
T Consensus 69 ~~Ge~~~Iv--G~nGsGKSTLl~~ 90 (305)
T PRK14264 69 PEKSVTALI--GPSGCGKSTFLRC 90 (305)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468888887 8999999999754
No 466
>PRK07324 transaminase; Validated
Probab=28.17 E-value=1.9e+02 Score=31.08 Aligned_cols=108 Identities=13% Similarity=0.191 Sum_probs=66.1
Q ss_pred CCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCCc
Q psy17657 37 VSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDV 116 (652)
Q Consensus 37 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da 116 (652)
-.+++++-|++...-+.|++|.++.|+.+=+..+...+++.|..+=+. .| +|. .-.++++...-..+..+-..+
T Consensus 63 G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l~~~gd~Vl~~-~P-~y~---~~~~~~~~~g~~v~~v~~~~~- 136 (373)
T PRK07324 63 GSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYALVEPGDHVISV-YP-TYQ---QLYDIPESLGAEVDYWQLKEE- 136 (373)
T ss_pred CCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEc-CC-Cch---hHHHHHHHcCCEEEEEecccc-
Confidence 467888888887666889999999999998888888888777654432 23 231 122355444444433332211
Q ss_pred CCCCCCCccCccccc-CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCC
Q psy17657 117 VPDHKPGVKSQLGNW-ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLS 169 (652)
Q Consensus 117 ~p~~~~Gv~~~l~nw-~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s 169 (652)
++| .+.+++.+.+.+ +-| +.+++..-=|.|.-++
T Consensus 137 ------------~~~~~d~~~l~~~~~~------~~k-li~i~~p~NPtG~~~~ 171 (373)
T PRK07324 137 ------------NGWLPDLDELRRLVRP------NTK-LICINNANNPTGALMD 171 (373)
T ss_pred ------------cCCCCCHHHHHHhCCC------CCc-EEEEeCCCCCCCCCCC
Confidence 145 367777665543 223 6677766667776543
No 467
>PRK08960 hypothetical protein; Provisional
Probab=28.15 E-value=3.3e+02 Score=29.12 Aligned_cols=46 Identities=17% Similarity=0.094 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHh-----hcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc
Q psy17657 38 SPKLLKFITESAN-----LCKPKDIHICDGTEEENKAILKKMVDTNTVKRV 83 (652)
Q Consensus 38 ~~~v~~~V~e~a~-----L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L 83 (652)
.+++++.|++... -+.|+.|.+..|+.+=...+.+.+.+.|..+=+
T Consensus 71 ~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv 121 (387)
T PRK08960 71 LPALREAIAGFYAQRYGVDVDPERILVTPGGSGALLLASSLLVDPGKHWLL 121 (387)
T ss_pred CHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHHHHHHHHHhcCCCCEEEE
Confidence 4678887777753 289999999999999999999888887764444
No 468
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=28.13 E-value=41 Score=35.05 Aligned_cols=20 Identities=20% Similarity=0.250 Sum_probs=15.6
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
..|+..=+. .|||||||+|.
T Consensus 31 ~~Ge~~~i~--G~nGaGKSTLl 50 (287)
T PRK13637 31 EDGEFVGLI--GHTGSGKSTLI 50 (287)
T ss_pred cCCCEEEEE--CCCCCcHHHHH
Confidence 457766555 89999999985
No 469
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=27.95 E-value=36 Score=33.40 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=19.7
Q ss_pred CcEEEEEEEcCCcccchhhcccCCC---CCCceEEEee
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVG 317 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VG 317 (652)
++-.|+. .|+|+|||-||...-. -.|.+|.++-
T Consensus 47 ~~~l~l~--G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 47 GENLILY--GPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp --EEEEE--ESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEE--hhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 4556666 4899999999875421 1577665553
No 470
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.95 E-value=45 Score=33.90 Aligned_cols=22 Identities=27% Similarity=0.487 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 36 ~~Ge~~~i~--G~nGsGKSTLl~~ 57 (258)
T PRK14268 36 PKNSVTALI--GPSGCGKSTFIRC 57 (258)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457765555 8999999999754
No 471
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=27.95 E-value=34 Score=34.75 Aligned_cols=16 Identities=38% Similarity=0.588 Sum_probs=12.8
Q ss_pred EEEEEcCCcccchhhc
Q psy17657 287 FVAAAFPSACGKTNLA 302 (652)
Q Consensus 287 yvaaAFPSaCGKTnlA 302 (652)
+.+-..|+|||||||.
T Consensus 24 ~~~i~G~NGsGKStll 39 (247)
T cd03275 24 FTCIIGPNGSGKSNLM 39 (247)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4555589999999993
No 472
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=27.94 E-value=45 Score=33.31 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=17.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
..|+..-+. .|||||||+|+-+
T Consensus 46 ~~Ge~~~i~--G~nGsGKSTLl~~ 67 (224)
T cd03220 46 PRGERIGLI--GRNGAGKSTLLRL 67 (224)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 457775555 8999999999764
No 473
>PRK03839 putative kinase; Provisional
Probab=27.87 E-value=31 Score=32.89 Aligned_cols=29 Identities=17% Similarity=0.198 Sum_probs=18.5
Q ss_pred EEEcCCcccchhhcccCCCCCCceEEEee
Q psy17657 289 AAAFPSACGKTNLAMLMPTLYDWKVECVG 317 (652)
Q Consensus 289 aaAFPSaCGKTnlAMl~p~~pGwkve~VG 317 (652)
.-..|+|||||++|=..-..-|+..--++
T Consensus 4 ~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 4 AITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 33478999999998654433466543333
No 474
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=27.83 E-value=67 Score=32.03 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=29.7
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcc--cCCCCCCceEEEeecceEEEEeCCC
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAM--LMPTLYDWKVECVGDDIAWMKFDEE 328 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAM--l~p~~pGwkve~VGDDIAWmr~~~d 328 (652)
..++....-|+--..++||||+|.. +.-..+.=...++|.|+-...+..+
T Consensus 7 ~~~~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~ 58 (219)
T PLN03071 7 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN 58 (219)
T ss_pred CCcCCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEEC
Confidence 3445445556667899999999965 2222222223567777765555433
No 475
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=27.71 E-value=32 Score=34.14 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=13.1
Q ss_pred EEEEEcCCcccchhhcc
Q psy17657 287 FVAAAFPSACGKTNLAM 303 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAM 303 (652)
-++--.|||||||||.-
T Consensus 24 ~~~i~G~NGsGKTTLl~ 40 (204)
T cd03240 24 LTLIVGQNGAGKTTIIE 40 (204)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 44555899999999954
No 476
>PHA00729 NTP-binding motif containing protein
Probab=27.70 E-value=39 Score=35.16 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHH
Q psy17657 600 KDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRL 637 (652)
Q Consensus 600 ~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl 637 (652)
+..|...++. ++++ .|--+||.++.+|..+.+++.
T Consensus 170 ~~~~~~~~~~--~~~~-~~~~~~p~~~y~ey~~~r~~~ 204 (226)
T PHA00729 170 KGEIVTQVKK--KALD-LFKVQIPNDIYKEYMQRRKET 204 (226)
T ss_pred cchhHHHHHH--HHHH-HhHhhCcHHHHHHHHHHHHHH
Confidence 4566665555 5554 566788888888877766654
No 477
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=27.69 E-value=30 Score=39.95 Aligned_cols=26 Identities=31% Similarity=0.572 Sum_probs=19.1
Q ss_pred EeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 275 ILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 275 Ilgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
-+|+..|.|-..| .|+|||||.+|-.
T Consensus 210 ~~gl~~p~GILLy----GPPGTGKT~LAKA 235 (512)
T TIGR03689 210 EYDLKPPKGVLLY----GPPGCGKTLIAKA 235 (512)
T ss_pred hccCCCCcceEEE----CCCCCcHHHHHHH
Confidence 3567778773333 8999999998854
No 478
>PRK02496 adk adenylate kinase; Provisional
Probab=27.66 E-value=21 Score=34.10 Aligned_cols=31 Identities=19% Similarity=0.201 Sum_probs=20.4
Q ss_pred EEcCCcccchhhcccCCCCCCceEEEeecce
Q psy17657 290 AAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320 (652)
Q Consensus 290 aAFPSaCGKTnlAMl~p~~pGwkve~VGDDI 320 (652)
--.|+|||||++|-..-..-|...-++||=+
T Consensus 6 i~G~pGsGKst~a~~la~~~~~~~i~~~~~~ 36 (184)
T PRK02496 6 FLGPPGAGKGTQAVVLAEHLHIPHISTGDIL 36 (184)
T ss_pred EECCCCCCHHHHHHHHHHHhCCcEEEhHHHH
Confidence 3478999999998765433455555555543
No 479
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.51 E-value=44 Score=35.76 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|+..-|. .|||||||+|.-+.
T Consensus 50 ~~Ge~~~I~--G~nGsGKSTLl~~L 72 (320)
T PRK13631 50 EKNKIYFII--GNSGSGKSTLVTHF 72 (320)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHHH
Confidence 457776666 89999999997643
No 480
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=27.48 E-value=36 Score=29.51 Aligned_cols=12 Identities=42% Similarity=0.335 Sum_probs=9.8
Q ss_pred EcCCcccchhhc
Q psy17657 291 AFPSACGKTNLA 302 (652)
Q Consensus 291 AFPSaCGKTnlA 302 (652)
..+++||||+|.
T Consensus 5 ~G~~g~GKTsLi 16 (119)
T PF08477_consen 5 LGDSGVGKTSLI 16 (119)
T ss_dssp ECSTTSSHHHHH
T ss_pred ECcCCCCHHHHH
Confidence 368999999983
No 481
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=27.47 E-value=68 Score=28.90 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=23.0
Q ss_pred EcCCcccchhhcc--cCCCCCCceEEEeecceEEEEeCCCccE
Q psy17657 291 AFPSACGKTNLAM--LMPTLYDWKVECVGDDIAWMKFDEEGNL 331 (652)
Q Consensus 291 AFPSaCGKTnlAM--l~p~~pGwkve~VGDDIAWmr~~~dGrl 331 (652)
-.+++||||+|.. +....+.=...++|.|..-..+..+|+-
T Consensus 6 ~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (164)
T smart00175 6 IGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKR 48 (164)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEE
Confidence 3589999999854 2122211112566777665555555543
No 482
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=27.37 E-value=26 Score=38.09 Aligned_cols=33 Identities=33% Similarity=0.366 Sum_probs=23.7
Q ss_pred EEEEcCCcccchhhcccC-CCCCCceEEEeecceEEE
Q psy17657 288 VAAAFPSACGKTNLAMLM-PTLYDWKVECVGDDIAWM 323 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~-p~~pGwkve~VGDDIAWm 323 (652)
+.-+.|.|+|||.||.-. ..++| |+|.=|-..+
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~~~---eIIs~DSmQv 39 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRLGG---EIISLDSMQV 39 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHcCC---cEEecchhhh
Confidence 344589999999999843 33555 8888776544
No 483
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=27.35 E-value=38 Score=33.55 Aligned_cols=17 Identities=18% Similarity=0.251 Sum_probs=12.5
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
++--.|+|||||||.=+
T Consensus 31 ~~i~G~NGsGKSTll~~ 47 (213)
T cd03279 31 FLICGPTGAGKSTILDA 47 (213)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33448999999999543
No 484
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=27.34 E-value=33 Score=40.04 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.8
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|++.-|. .|||||||+|+-+.
T Consensus 481 ~~G~~vaiv--G~sGsGKSTL~~ll 503 (694)
T TIGR01846 481 KPGEFIGIV--GPSGSGKSTLTKLL 503 (694)
T ss_pred CCCCEEEEE--CCCCCCHHHHHHHH
Confidence 468887777 89999999998654
No 485
>KOG0064|consensus
Probab=27.29 E-value=29 Score=40.87 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=9.8
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|.||||++|-=+
T Consensus 515 GPNGCGKSSLfRI 527 (728)
T KOG0064|consen 515 GPNGCGKSSLFRI 527 (728)
T ss_pred CCCCccHHHHHHH
Confidence 3778999998543
No 486
>PRK08356 hypothetical protein; Provisional
Probab=27.16 E-value=37 Score=33.12 Aligned_cols=18 Identities=33% Similarity=0.335 Sum_probs=13.5
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|+|||||++|-.
T Consensus 7 ~i~~~G~~gsGK~t~a~~ 24 (195)
T PRK08356 7 IVGVVGKIAAGKTTVAKF 24 (195)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455568899999988754
No 487
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.15 E-value=47 Score=33.39 Aligned_cols=22 Identities=27% Similarity=0.383 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|+-+
T Consensus 28 ~~Ge~~~i~--G~nGsGKSTLl~~ 49 (251)
T PRK14251 28 EEKELTALI--GPSGCGKSTFLRC 49 (251)
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 458776666 8999999998764
No 488
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=27.14 E-value=46 Score=34.58 Aligned_cols=20 Identities=30% Similarity=0.346 Sum_probs=15.8
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
..|+..-|. .|||||||+|.
T Consensus 31 ~~Ge~~~i~--G~nGaGKSTLl 50 (279)
T PRK13635 31 YEGEWVAIV--GHNGSGKSTLA 50 (279)
T ss_pred cCCCEEEEE--CCCCCcHHHHH
Confidence 358776665 89999999985
No 489
>PRK12338 hypothetical protein; Provisional
Probab=26.96 E-value=24 Score=38.39 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=22.3
Q ss_pred EEEEEcCCcccchhhcccCCCCCCceEEEeecce
Q psy17657 287 FVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDI 320 (652)
-|.-+.+||||||++|-.....-|++. ++.+|.
T Consensus 6 ii~i~G~sGsGKST~a~~la~~l~~~~-~~~tD~ 38 (319)
T PRK12338 6 VILIGSASGIGKSTIASELARTLNIKH-LIETDF 38 (319)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCeE-EccChH
Confidence 345558999999999986655557643 335554
No 490
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=26.91 E-value=24 Score=37.65 Aligned_cols=12 Identities=58% Similarity=0.847 Sum_probs=10.3
Q ss_pred cCCcccchhhcc
Q psy17657 292 FPSACGKTNLAM 303 (652)
Q Consensus 292 FPSaCGKTnlAM 303 (652)
.|||||||+|.-
T Consensus 3 G~nGsGKSTLl~ 14 (325)
T TIGR01187 3 GPSGCGKTTLLR 14 (325)
T ss_pred CCCCCCHHHHHH
Confidence 599999999864
No 491
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=26.87 E-value=24 Score=33.34 Aligned_cols=34 Identities=24% Similarity=0.451 Sum_probs=22.9
Q ss_pred EeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecc
Q psy17657 275 ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDD 319 (652)
Q Consensus 275 Ilgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDD 319 (652)
|+.+++++| |+|||++|...-. -.|.||-.|-=|
T Consensus 1 vi~v~s~kg-----------G~GKTt~a~~LA~~la~~g~~vllvD~D 37 (169)
T cd02037 1 VIAVMSGKG-----------GVGKSTVAVNLALALAKLGYKVGLLDAD 37 (169)
T ss_pred CEEEecCCC-----------cCChhHHHHHHHHHHHHcCCcEEEEeCC
Confidence 355666665 8999998764332 269999887433
No 492
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=26.83 E-value=33 Score=29.01 Aligned_cols=16 Identities=44% Similarity=0.515 Sum_probs=12.4
Q ss_pred EEEcCCcccchhhccc
Q psy17657 289 AAAFPSACGKTNLAML 304 (652)
Q Consensus 289 aaAFPSaCGKTnlAMl 304 (652)
...-|.|+|||.+++.
T Consensus 4 ~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 4 LLAAPTGSGKTLAALL 19 (144)
T ss_pred EEECCCCCchhHHHHH
Confidence 4457999999988664
No 493
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=26.81 E-value=42 Score=31.25 Aligned_cols=17 Identities=29% Similarity=0.182 Sum_probs=13.7
Q ss_pred EEEEEcCCcccchhhcc
Q psy17657 287 FVAAAFPSACGKTNLAM 303 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAM 303 (652)
-|+-..|++||||+|..
T Consensus 4 ki~vvG~~~vGKTsli~ 20 (170)
T cd04115 4 KIIVIGDSNVGKTCLTY 20 (170)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35666899999999965
No 494
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=26.43 E-value=32 Score=36.87 Aligned_cols=18 Identities=33% Similarity=0.514 Sum_probs=14.4
Q ss_pred EEEEcCCcccchhhcccC
Q psy17657 288 VAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~ 305 (652)
|+-+.|+|||||.||.-.
T Consensus 2 i~i~G~t~~GKs~la~~l 19 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQL 19 (287)
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 345689999999999843
No 495
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=26.43 E-value=33 Score=40.67 Aligned_cols=26 Identities=38% Similarity=0.520 Sum_probs=18.3
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
|+..|.| +.--.|+|||||.||-...
T Consensus 483 g~~~~~g----iLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 483 GIRPPKG----VLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred CCCCCce----EEEECCCCCCHHHHHHHHH
Confidence 5556655 3334899999999987644
No 496
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=26.41 E-value=29 Score=32.57 Aligned_cols=16 Identities=25% Similarity=0.146 Sum_probs=9.7
Q ss_pred EEEcCCcccchhhccc
Q psy17657 289 AAAFPSACGKTNLAML 304 (652)
Q Consensus 289 aaAFPSaCGKTnlAMl 304 (652)
+-..+.+||||+|+-.
T Consensus 3 ~i~G~~stGKTTL~~~ 18 (163)
T PF13521_consen 3 VITGGPSTGKTTLIEA 18 (163)
T ss_dssp EEE--TTSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3446778888888753
No 497
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=26.40 E-value=31 Score=37.75 Aligned_cols=14 Identities=43% Similarity=0.726 Sum_probs=12.1
Q ss_pred CCcccchhhcccCC
Q psy17657 293 PSACGKTNLAMLMP 306 (652)
Q Consensus 293 PSaCGKTnlAMl~p 306 (652)
|+|-|||+||++..
T Consensus 60 PPGlGKTTLA~IIA 73 (332)
T COG2255 60 PPGLGKTTLAHIIA 73 (332)
T ss_pred CCCCcHHHHHHHHH
Confidence 78899999999843
No 498
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.37 E-value=49 Score=33.29 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=16.3
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-++ .|||||||+|.=+
T Consensus 27 ~Ge~~~i~--G~nGsGKSTLl~~ 47 (246)
T PRK14269 27 QNKITALI--GASGCGKSTFLRC 47 (246)
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 57776666 8999999998643
No 499
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=26.22 E-value=43 Score=37.30 Aligned_cols=20 Identities=25% Similarity=0.288 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
.+|+.+-+. .|||||||+|.
T Consensus 27 ~~Ge~~~li--G~nGsGKSTLl 46 (490)
T PRK10938 27 NAGDSWAFV--GANGSGKSALA 46 (490)
T ss_pred cCCCEEEEE--CCCCCCHHHHH
Confidence 468887777 89999999986
No 500
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=26.13 E-value=69 Score=29.19 Aligned_cols=15 Identities=40% Similarity=0.310 Sum_probs=11.9
Q ss_pred EEEEcCCcccchhhc
Q psy17657 288 VAAAFPSACGKTNLA 302 (652)
Q Consensus 288 vaaAFPSaCGKTnlA 302 (652)
|+-..+++||||+|+
T Consensus 3 i~viG~~~~GKSsl~ 17 (172)
T cd01862 3 VIILGDSGVGKTSLM 17 (172)
T ss_pred EEEECCCCCCHHHHH
Confidence 445578999999985
Done!