Query psy17657
Match_columns 652
No_of_seqs 159 out of 457
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 19:39:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17657.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17657hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3moe_A Phosphoenolpyruvate car 100.0 4E-277 1E-281 2217.9 56.2 603 26-640 14-624 (624)
2 2faf_A Phosphoenolpyruvate car 100.0 2E-267 8E-272 2139.5 55.3 598 31-640 2-608 (608)
3 2zci_A Phosphoenolpyruvate car 100.0 6E-263 2E-267 2108.4 50.2 584 36-641 15-609 (610)
4 1j3b_A ATP-dependent phosphoen 100.0 1.6E-92 5.4E-97 772.4 24.3 463 47-616 5-508 (529)
5 2olr_A Phosphoenolpyruvate car 100.0 3.2E-46 1.1E-50 408.1 35.6 472 46-616 12-519 (540)
6 1ytm_A Phosphoenolpyruvate car 100.0 3.4E-46 1.2E-50 408.1 30.2 459 45-618 6-515 (532)
7 1ii2_A Phosphoenolpyruvate car 100.0 3.9E-46 1.3E-50 407.2 28.5 475 54-627 1-512 (524)
8 2qmh_A HPR kinase/phosphorylas 92.7 0.14 4.6E-06 50.8 5.8 68 263-338 17-84 (205)
9 3tqf_A HPR(Ser) kinase; transf 92.2 0.12 4E-06 50.5 4.5 48 283-338 16-65 (181)
10 1ko7_A HPR kinase/phosphatase; 87.7 0.56 1.9E-05 48.8 5.5 70 260-337 124-193 (314)
11 1knx_A Probable HPR(Ser) kinas 87.3 0.52 1.8E-05 49.0 5.0 93 236-337 101-195 (312)
12 3c8u_A Fructokinase; YP_612366 83.0 0.61 2.1E-05 43.7 2.8 21 281-303 20-40 (208)
13 1zp6_A Hypothetical protein AT 81.7 0.38 1.3E-05 43.7 0.8 37 282-320 8-45 (191)
14 3uie_A Adenylyl-sulfate kinase 81.5 0.5 1.7E-05 43.9 1.6 39 280-320 22-64 (200)
15 4eun_A Thermoresistant glucoki 78.5 0.83 2.8E-05 42.4 2.0 25 279-305 25-49 (200)
16 1kgd_A CASK, peripheral plasma 77.5 0.94 3.2E-05 41.6 2.0 21 282-304 4-24 (180)
17 3tr0_A Guanylate kinase, GMP k 77.2 1 3.5E-05 41.1 2.2 20 282-303 6-25 (205)
18 3asz_A Uridine kinase; cytidin 77.2 0.89 3E-05 42.1 1.8 23 280-304 3-25 (211)
19 4gp7_A Metallophosphoesterase; 77.0 0.93 3.2E-05 41.4 1.9 24 279-304 5-28 (171)
20 1knq_A Gluconate kinase; ALFA/ 75.6 1.2 4E-05 40.0 2.1 22 281-304 6-27 (175)
21 2qor_A Guanylate kinase; phosp 74.9 1 3.5E-05 42.0 1.5 21 282-304 11-31 (204)
22 1s96_A Guanylate kinase, GMP k 73.5 1.4 4.7E-05 42.7 2.1 20 281-302 14-33 (219)
23 3vaa_A Shikimate kinase, SK; s 73.4 1.4 4.7E-05 40.9 2.0 21 282-304 24-44 (199)
24 2vp4_A Deoxynucleoside kinase; 72.9 1.6 5.5E-05 41.7 2.4 20 286-305 21-40 (230)
25 1znw_A Guanylate kinase, GMP k 72.9 1.4 4.9E-05 41.1 2.1 21 281-303 18-38 (207)
26 2j41_A Guanylate kinase; GMP, 72.8 1.6 5.3E-05 39.9 2.2 22 281-304 4-25 (207)
27 3tqc_A Pantothenate kinase; bi 71.6 1.6 5.4E-05 45.2 2.2 22 282-303 89-110 (321)
28 3lw7_A Adenylate kinase relate 71.4 0.62 2.1E-05 40.6 -0.8 31 287-318 3-33 (179)
29 4a74_A DNA repair and recombin 71.3 1.1 3.9E-05 41.3 0.9 21 282-304 24-44 (231)
30 1z6g_A Guanylate kinase; struc 71.2 1.4 4.9E-05 41.9 1.6 24 279-304 19-42 (218)
31 3tau_A Guanylate kinase, GMP k 70.4 1.8 6.3E-05 40.6 2.2 21 281-303 6-26 (208)
32 3lnc_A Guanylate kinase, GMP k 70.1 1.4 4.7E-05 41.8 1.2 22 280-303 24-45 (231)
33 1odf_A YGR205W, hypothetical 3 69.8 1.9 6.6E-05 43.6 2.3 22 283-304 29-50 (290)
34 1lvg_A Guanylate kinase, GMP k 69.2 1.5 5.2E-05 41.0 1.3 21 282-304 3-23 (198)
35 3ec2_A DNA replication protein 68.9 1.4 4.7E-05 39.9 0.9 22 281-304 36-57 (180)
36 2cvh_A DNA repair and recombin 68.6 2 6.9E-05 39.4 2.0 22 281-304 18-39 (220)
37 1kag_A SKI, shikimate kinase I 68.4 1.7 5.9E-05 38.6 1.4 16 290-305 9-24 (173)
38 2bdt_A BH3686; alpha-beta prot 68.1 0.78 2.7E-05 41.8 -0.9 32 288-320 5-37 (189)
39 1uf9_A TT1252 protein; P-loop, 67.9 2 6.7E-05 39.0 1.8 31 280-311 3-33 (203)
40 2ehv_A Hypothetical protein PH 67.8 1.9 6.4E-05 40.3 1.6 22 281-304 28-49 (251)
41 1y63_A LMAJ004144AAA protein; 67.8 2.3 7.9E-05 38.9 2.2 26 278-305 5-30 (184)
42 2v9p_A Replication protein E1; 66.2 2.1 7.3E-05 44.0 1.8 25 279-305 122-146 (305)
43 1qhx_A CPT, protein (chloramph 65.5 2.5 8.5E-05 37.8 1.9 19 284-304 4-22 (178)
44 1n0w_A DNA repair protein RAD5 65.5 2.1 7.2E-05 39.9 1.5 22 281-304 22-43 (243)
45 2x8a_A Nuclear valosin-contain 65.1 1.7 5.9E-05 43.1 0.9 24 277-304 40-63 (274)
46 2w0m_A SSO2452; RECA, SSPF, un 64.9 2.2 7.6E-05 39.1 1.5 21 282-304 22-42 (235)
47 1rj9_A FTSY, signal recognitio 64.4 1.3 4.5E-05 45.1 -0.2 37 282-320 101-140 (304)
48 2kjq_A DNAA-related protein; s 64.3 2.9 9.9E-05 37.9 2.1 21 282-304 35-55 (149)
49 4e22_A Cytidylate kinase; P-lo 64.2 2.9 9.8E-05 40.7 2.2 22 281-304 25-46 (252)
50 2qt1_A Nicotinamide riboside k 63.1 2.9 0.0001 38.6 1.9 18 288-305 24-41 (207)
51 3tif_A Uncharacterized ABC tra 62.8 3.6 0.00012 40.0 2.6 23 278-302 26-48 (235)
52 3kb2_A SPBC2 prophage-derived 61.6 3 0.0001 36.6 1.7 17 288-304 4-20 (173)
53 3a00_A Guanylate kinase, GMP k 61.5 2.7 9.4E-05 38.5 1.4 14 289-302 5-18 (186)
54 2dr3_A UPF0273 protein PH0284; 60.3 2.8 9.7E-05 39.0 1.3 21 281-303 21-41 (247)
55 2jeo_A Uridine-cytidine kinase 59.9 3.6 0.00012 39.5 2.0 17 288-304 28-44 (245)
56 3b9q_A Chloroplast SRP recepto 59.7 2.1 7.3E-05 43.5 0.4 41 278-320 95-138 (302)
57 2cbz_A Multidrug resistance-as 59.5 4.5 0.00015 39.4 2.6 25 278-304 26-50 (237)
58 1htw_A HI0065; nucleotide-bind 59.4 3.8 0.00013 37.8 2.0 20 281-302 31-50 (158)
59 2pez_A Bifunctional 3'-phospho 58.8 3.9 0.00013 36.9 1.9 38 281-320 3-44 (179)
60 3aez_A Pantothenate kinase; tr 58.1 3.8 0.00013 41.9 1.9 19 286-304 91-109 (312)
61 3fvq_A Fe(3+) IONS import ATP- 58.0 4.7 0.00016 42.5 2.6 40 278-320 25-68 (359)
62 1nlf_A Regulatory protein REPA 57.5 3.4 0.00011 40.4 1.3 22 281-304 28-49 (279)
63 1rz3_A Hypothetical protein rb 57.0 4.2 0.00014 37.8 1.9 35 286-320 23-60 (201)
64 1cr0_A DNA primase/helicase; R 56.8 3.8 0.00013 40.2 1.6 22 281-304 33-54 (296)
65 1ly1_A Polynucleotide kinase; 56.7 4.4 0.00015 35.8 1.9 18 287-304 4-21 (181)
66 2pcj_A ABC transporter, lipopr 56.5 4.4 0.00015 39.1 1.9 22 280-303 27-48 (224)
67 1ixz_A ATP-dependent metallopr 56.3 3.1 0.00011 39.7 0.8 24 277-304 45-68 (254)
68 2vli_A Antibiotic resistance p 56.2 4.1 0.00014 36.4 1.6 18 287-304 7-24 (183)
69 1b0u_A Histidine permease; ABC 55.9 5.5 0.00019 39.4 2.6 24 278-303 27-50 (262)
70 2ff7_A Alpha-hemolysin translo 55.8 4.8 0.00016 39.6 2.1 25 278-304 30-54 (247)
71 2zts_A Putative uncharacterize 55.7 4 0.00014 38.0 1.5 21 281-303 28-48 (251)
72 3ney_A 55 kDa erythrocyte memb 55.6 5.1 0.00018 38.7 2.3 20 282-303 18-37 (197)
73 1mv5_A LMRA, multidrug resista 55.5 5.5 0.00019 38.8 2.5 25 278-304 23-47 (243)
74 1nks_A Adenylate kinase; therm 55.3 4.5 0.00016 36.0 1.7 18 287-304 3-20 (194)
75 2yyz_A Sugar ABC transporter, 55.1 5.8 0.0002 41.6 2.7 24 278-303 24-47 (359)
76 3e70_C DPA, signal recognition 55.0 3.2 0.00011 42.9 0.8 38 281-320 127-167 (328)
77 1gvn_B Zeta; postsegregational 54.8 5.2 0.00018 40.0 2.2 19 286-304 34-52 (287)
78 2ghi_A Transport protein; mult 54.8 5.9 0.0002 39.2 2.6 25 278-304 41-65 (260)
79 1sq5_A Pantothenate kinase; P- 54.8 4.9 0.00017 40.4 2.0 18 286-303 81-98 (308)
80 3mcb_B Transcription factor BT 54.7 3 0.0001 33.8 0.4 30 85-114 14-43 (58)
81 2it1_A 362AA long hypothetical 54.6 5.9 0.0002 41.6 2.7 24 278-303 24-47 (362)
82 4b4t_J 26S protease regulatory 54.5 3.6 0.00012 44.2 1.1 26 276-305 177-202 (405)
83 3bos_A Putative DNA replicatio 54.5 5.7 0.00019 36.4 2.3 21 282-304 51-71 (242)
84 4dzz_A Plasmid partitioning pr 54.3 4.2 0.00015 36.9 1.4 35 273-318 1-38 (206)
85 2rhm_A Putative kinase; P-loop 54.2 4.8 0.00017 36.1 1.7 19 286-304 6-24 (193)
86 3rlf_A Maltose/maltodextrin im 53.9 6.1 0.00021 42.0 2.7 40 278-320 24-67 (381)
87 1zuh_A Shikimate kinase; alpha 53.9 4.6 0.00016 36.0 1.5 29 272-312 6-34 (168)
88 2pze_A Cystic fibrosis transme 53.7 5.6 0.00019 38.5 2.2 23 279-303 30-52 (229)
89 3gd7_A Fusion complex of cysti 53.5 6.1 0.00021 41.9 2.6 25 278-304 42-66 (390)
90 1cke_A CK, MSSA, protein (cyti 53.2 4.5 0.00015 37.5 1.4 18 288-305 8-25 (227)
91 1zu4_A FTSY; GTPase, signal re 53.0 3.3 0.00011 42.5 0.4 41 278-320 100-143 (320)
92 1v43_A Sugar-binding transport 53.0 6.5 0.00022 41.5 2.7 24 278-303 32-55 (372)
93 2ixe_A Antigen peptide transpo 52.7 6.7 0.00023 39.1 2.6 25 278-304 40-64 (271)
94 1a7j_A Phosphoribulokinase; tr 52.7 4.2 0.00014 40.9 1.2 17 287-303 7-23 (290)
95 2olj_A Amino acid ABC transpor 52.6 6.7 0.00023 39.1 2.6 24 278-303 45-68 (263)
96 1kht_A Adenylate kinase; phosp 52.3 5.2 0.00018 35.7 1.6 18 287-304 5-22 (192)
97 1z47_A CYSA, putative ABC-tran 52.3 5.9 0.0002 41.6 2.2 23 279-303 37-59 (355)
98 2wwf_A Thymidilate kinase, put 52.2 4 0.00014 37.4 0.8 18 287-304 12-29 (212)
99 3lkx_A Transcription factor BT 52.2 3.3 0.00011 34.4 0.3 30 85-114 14-43 (66)
100 3d31_A Sulfate/molybdate ABC t 52.1 5.5 0.00019 41.6 2.0 24 278-303 21-44 (348)
101 4b4t_M 26S protease regulatory 52.0 3.8 0.00013 44.3 0.8 25 276-304 210-234 (434)
102 2zu0_C Probable ATP-dependent 52.0 6.9 0.00024 38.8 2.6 24 279-304 42-65 (267)
103 4b4t_K 26S protease regulatory 51.8 3.8 0.00013 44.2 0.7 25 276-304 201-225 (428)
104 3gfo_A Cobalt import ATP-bindi 51.8 5.9 0.0002 39.8 2.1 24 278-303 29-52 (275)
105 3twe_A Alpha4H; unknown functi 51.7 8.9 0.0003 26.4 2.2 21 624-644 4-24 (27)
106 1ji0_A ABC transporter; ATP bi 51.6 6.3 0.00022 38.4 2.2 23 280-304 29-51 (240)
107 1uj2_A Uridine-cytidine kinase 51.6 5.5 0.00019 38.4 1.8 19 287-305 24-42 (252)
108 2jaq_A Deoxyguanosine kinase; 51.5 5.4 0.00019 35.9 1.6 18 287-304 2-19 (205)
109 3nh6_A ATP-binding cassette SU 51.5 5.7 0.00019 40.7 1.9 25 278-304 75-99 (306)
110 1oxx_K GLCV, glucose, ABC tran 51.3 5.4 0.00018 41.7 1.7 40 278-320 26-69 (353)
111 2d2e_A SUFC protein; ABC-ATPas 51.1 6.3 0.00021 38.6 2.1 23 280-304 26-48 (250)
112 3t15_A Ribulose bisphosphate c 51.0 3.6 0.00012 41.0 0.4 43 259-305 13-56 (293)
113 4fcw_A Chaperone protein CLPB; 50.9 5.8 0.0002 38.5 1.8 27 278-304 40-66 (311)
114 1g29_1 MALK, maltose transport 50.7 6.4 0.00022 41.4 2.2 39 279-320 25-67 (372)
115 4b4t_L 26S protease subunit RP 50.6 4.1 0.00014 44.1 0.8 25 276-304 210-234 (437)
116 2qz4_A Paraplegin; AAA+, SPG7, 50.4 5.4 0.00019 37.6 1.5 25 276-304 34-58 (262)
117 4g1u_C Hemin import ATP-bindin 50.2 6.5 0.00022 39.1 2.1 21 281-303 35-55 (266)
118 3t61_A Gluconokinase; PSI-biol 49.8 5.5 0.00019 36.6 1.4 17 288-304 21-37 (202)
119 3exa_A TRNA delta(2)-isopenten 49.7 5.9 0.0002 41.5 1.7 19 286-304 4-22 (322)
120 2eyu_A Twitching motility prot 49.5 6.6 0.00022 38.9 2.0 39 281-322 23-66 (261)
121 1lv7_A FTSH; alpha/beta domain 49.4 5.6 0.00019 38.0 1.4 25 276-304 40-64 (257)
122 2yz2_A Putative ABC transporte 49.4 8.1 0.00028 38.2 2.6 24 278-303 28-51 (266)
123 3b85_A Phosphate starvation-in 49.3 6.9 0.00024 37.6 2.0 22 281-304 20-41 (208)
124 1gtv_A TMK, thymidylate kinase 49.3 3.5 0.00012 37.8 -0.1 18 287-304 2-19 (214)
125 1vma_A Cell division protein F 49.2 3.9 0.00013 41.8 0.3 38 281-320 102-142 (306)
126 2og2_A Putative signal recogni 48.5 4.1 0.00014 42.8 0.3 41 278-320 152-195 (359)
127 3trf_A Shikimate kinase, SK; a 48.5 6 0.00021 35.5 1.4 20 284-305 6-25 (185)
128 1ukz_A Uridylate kinase; trans 48.5 7.8 0.00027 35.4 2.2 21 284-304 14-35 (203)
129 1pzn_A RAD51, DNA repair and r 48.4 5 0.00017 41.4 0.9 22 281-304 129-150 (349)
130 1iy2_A ATP-dependent metallopr 48.2 5.1 0.00017 39.0 0.9 24 277-304 69-92 (278)
131 1ye8_A Protein THEP1, hypothet 48.0 6.6 0.00023 36.6 1.6 16 289-304 4-19 (178)
132 3lda_A DNA repair protein RAD5 48.0 5.7 0.0002 42.2 1.3 20 282-303 177-196 (400)
133 2z0h_A DTMP kinase, thymidylat 47.8 6.8 0.00023 35.3 1.6 18 287-304 2-19 (197)
134 1jjv_A Dephospho-COA kinase; P 47.8 6.2 0.00021 36.3 1.4 29 290-320 7-35 (206)
135 2ze6_A Isopentenyl transferase 47.7 6.1 0.00021 38.6 1.4 17 288-304 4-20 (253)
136 2bbs_A Cystic fibrosis transme 47.6 8.5 0.00029 39.0 2.5 24 278-303 59-82 (290)
137 1vpl_A ABC transporter, ATP-bi 47.2 9.5 0.00033 37.8 2.7 25 278-304 36-60 (256)
138 2ihy_A ABC transporter, ATP-bi 47.1 7.7 0.00026 38.9 2.1 22 281-304 45-66 (279)
139 4ag6_A VIRB4 ATPase, type IV s 46.7 3.5 0.00012 42.4 -0.6 12 293-304 43-54 (392)
140 1g6h_A High-affinity branched- 46.6 7.5 0.00026 38.2 1.9 21 281-303 31-51 (257)
141 2if2_A Dephospho-COA kinase; a 46.0 6.5 0.00022 36.0 1.2 14 291-304 7-20 (204)
142 1m7g_A Adenylylsulfate kinase; 46.0 8.3 0.00028 35.9 2.0 22 281-304 23-44 (211)
143 2yvu_A Probable adenylyl-sulfa 45.8 9 0.00031 34.7 2.1 36 283-320 13-52 (186)
144 1vht_A Dephospho-COA kinase; s 45.6 7.9 0.00027 36.0 1.7 20 286-305 5-24 (218)
145 1tev_A UMP-CMP kinase; ploop, 45.6 7.8 0.00027 34.5 1.7 19 286-304 4-22 (196)
146 2grj_A Dephospho-COA kinase; T 45.1 8.3 0.00028 36.5 1.9 14 292-305 19-32 (192)
147 1sgw_A Putative ABC transporte 45.1 7.7 0.00026 37.5 1.7 22 281-304 33-54 (214)
148 1v5w_A DMC1, meiotic recombina 45.1 7.8 0.00027 39.7 1.8 21 281-303 120-140 (343)
149 1via_A Shikimate kinase; struc 45.0 7.3 0.00025 34.9 1.4 18 288-305 7-24 (175)
150 3d3q_A TRNA delta(2)-isopenten 44.9 7 0.00024 41.0 1.4 19 286-304 8-26 (340)
151 2f1r_A Molybdopterin-guanine d 44.9 5 0.00017 37.5 0.3 16 290-305 7-22 (171)
152 2qi9_C Vitamin B12 import ATP- 44.7 9 0.00031 37.8 2.1 22 280-303 23-44 (249)
153 1ls1_A Signal recognition part 44.6 4.9 0.00017 40.5 0.2 37 282-320 97-136 (295)
154 2bbw_A Adenylate kinase 4, AK4 44.4 8 0.00027 36.9 1.6 18 287-304 29-46 (246)
155 3bh0_A DNAB-like replicative h 44.3 8.7 0.0003 38.8 2.0 22 281-304 66-87 (315)
156 2r44_A Uncharacterized protein 44.1 6.6 0.00022 39.0 1.0 12 293-304 54-65 (331)
157 2i3b_A HCR-ntpase, human cance 44.0 7.8 0.00027 36.6 1.4 12 292-303 8-19 (189)
158 1jbk_A CLPB protein; beta barr 44.0 7.1 0.00024 33.9 1.1 13 291-303 49-61 (195)
159 3nwj_A ATSK2; P loop, shikimat 43.9 8 0.00027 38.3 1.6 22 283-306 48-69 (250)
160 2plr_A DTMP kinase, probable t 43.7 9.2 0.00032 34.6 1.9 18 287-304 6-23 (213)
161 3iij_A Coilin-interacting nucl 43.6 8 0.00027 34.8 1.4 17 288-304 14-30 (180)
162 1tf7_A KAIC; homohexamer, hexa 43.1 7 0.00024 42.2 1.1 22 281-304 37-58 (525)
163 2nq2_C Hypothetical ABC transp 43.0 10 0.00035 37.3 2.2 22 281-304 29-50 (253)
164 3cf0_A Transitional endoplasmi 42.7 10 0.00036 37.5 2.2 21 283-305 49-69 (301)
165 1u94_A RECA protein, recombina 42.3 7.8 0.00027 40.4 1.3 22 281-304 61-82 (356)
166 2yhs_A FTSY, cell division pro 42.3 5.9 0.0002 43.8 0.4 41 278-320 288-331 (503)
167 1ex7_A Guanylate kinase; subst 42.0 8.5 0.00029 36.7 1.4 15 288-302 4-18 (186)
168 3cm0_A Adenylate kinase; ATP-b 41.8 12 0.00039 33.6 2.2 17 288-304 7-23 (186)
169 2f6r_A COA synthase, bifunctio 41.8 9.9 0.00034 37.7 1.9 21 284-304 74-94 (281)
170 3kta_A Chromosome segregation 41.7 9.2 0.00031 34.3 1.5 13 291-303 32-44 (182)
171 3h4m_A Proteasome-activating n 41.6 11 0.00039 36.1 2.2 19 285-305 53-71 (285)
172 2qby_A CDC6 homolog 1, cell di 41.5 9.1 0.00031 37.7 1.5 23 280-304 42-64 (386)
173 2z43_A DNA repair and recombin 41.4 8.5 0.00029 38.9 1.3 22 281-304 105-126 (324)
174 4b4t_H 26S protease regulatory 41.3 5.5 0.00019 43.7 -0.1 25 276-304 238-262 (467)
175 2r62_A Cell division protease 40.9 6.6 0.00023 37.5 0.4 24 277-304 40-63 (268)
176 2p65_A Hypothetical protein PF 40.8 7.9 0.00027 33.8 0.9 13 291-303 49-61 (187)
177 1in4_A RUVB, holliday junction 40.6 6.6 0.00023 39.7 0.4 14 292-305 58-71 (334)
178 3ake_A Cytidylate kinase; CMP 40.4 9.5 0.00033 34.6 1.4 19 287-305 4-22 (208)
179 3b9p_A CG5977-PA, isoform A; A 40.4 6.8 0.00023 38.1 0.4 20 283-304 54-73 (297)
180 2pjz_A Hypothetical protein ST 40.3 13 0.00044 37.1 2.4 23 278-303 26-48 (263)
181 1qf9_A UMP/CMP kinase, protein 40.3 11 0.00037 33.5 1.8 19 286-304 7-25 (194)
182 4b4t_I 26S protease regulatory 40.2 6.9 0.00024 42.6 0.5 26 276-305 211-236 (437)
183 1np6_A Molybdopterin-guanine d 40.1 9.5 0.00033 35.8 1.4 16 288-303 9-24 (174)
184 2c95_A Adenylate kinase 1; tra 39.9 8.2 0.00028 34.7 0.9 18 287-304 11-28 (196)
185 3tui_C Methionine import ATP-b 39.9 14 0.00047 39.1 2.7 24 278-303 49-72 (366)
186 2i1q_A DNA repair and recombin 39.8 8.9 0.00031 38.3 1.2 21 281-303 96-116 (322)
187 2w58_A DNAI, primosome compone 39.7 13 0.00043 34.0 2.1 19 284-304 55-73 (202)
188 2px0_A Flagellar biosynthesis 39.4 9 0.00031 38.7 1.2 37 282-320 104-144 (296)
189 1nn5_A Similar to deoxythymidy 39.1 13 0.00044 33.9 2.1 20 283-304 9-28 (215)
190 2yl4_A ATP-binding cassette SU 39.1 14 0.00048 40.6 2.7 25 278-304 365-389 (595)
191 3foz_A TRNA delta(2)-isopenten 39.1 11 0.00039 39.3 1.9 19 286-304 11-29 (316)
192 1lw7_A Transcriptional regulat 38.9 9.8 0.00034 38.9 1.4 36 28-65 5-40 (365)
193 3r20_A Cytidylate kinase; stru 38.8 9.1 0.00031 37.8 1.1 19 287-305 11-29 (233)
194 2bwj_A Adenylate kinase 5; pho 38.8 11 0.00037 34.0 1.5 18 287-304 14-31 (199)
195 4a82_A Cystic fibrosis transme 38.5 15 0.0005 40.3 2.8 26 278-305 362-387 (578)
196 3b60_A Lipid A export ATP-bind 38.5 13 0.00046 40.6 2.5 25 278-304 364-388 (582)
197 3qf4_B Uncharacterized ABC tra 38.5 16 0.00056 40.2 3.1 25 278-304 376-400 (598)
198 1l8q_A Chromosomal replication 38.5 9.5 0.00033 37.8 1.2 19 284-304 38-56 (324)
199 2kwh_A RAla-binding protein 1; 38.4 19 0.00065 29.2 2.6 26 619-644 1-26 (56)
200 1svm_A Large T antigen; AAA+ f 38.3 13 0.00044 39.3 2.2 23 280-304 166-188 (377)
201 2cdn_A Adenylate kinase; phosp 38.2 12 0.0004 34.4 1.6 20 286-305 21-40 (201)
202 2v1u_A Cell division control p 37.8 9.7 0.00033 37.6 1.1 20 283-304 44-63 (387)
203 2p5t_B PEZT; postsegregational 37.5 13 0.00046 35.8 2.0 18 287-304 34-51 (253)
204 2zr9_A Protein RECA, recombina 37.5 11 0.00036 39.2 1.3 22 281-304 59-80 (349)
205 2v54_A DTMP kinase, thymidylat 37.3 11 0.00037 34.2 1.3 29 287-315 6-35 (204)
206 3ld9_A DTMP kinase, thymidylat 37.2 13 0.00045 36.4 1.9 33 272-304 8-40 (223)
207 1e6c_A Shikimate kinase; phosp 36.4 12 0.00041 33.0 1.4 15 290-304 7-21 (173)
208 2onk_A Molybdate/tungstate ABC 36.2 13 0.00043 36.5 1.6 17 288-304 27-43 (240)
209 3b5x_A Lipid A export ATP-bind 36.2 15 0.00051 40.3 2.3 25 278-304 364-388 (582)
210 3eph_A TRNA isopentenyltransfe 36.1 12 0.00041 40.4 1.6 18 287-304 4-21 (409)
211 3syl_A Protein CBBX; photosynt 36.0 15 0.00053 35.5 2.2 17 285-303 69-85 (309)
212 3fb4_A Adenylate kinase; psych 36.0 12 0.00042 34.5 1.4 41 593-633 165-211 (216)
213 2iyv_A Shikimate kinase, SK; t 35.9 12 0.00043 33.5 1.4 17 289-305 6-22 (184)
214 3ecf_A NTF2-like protein; stru 35.7 17 0.00058 33.4 2.2 31 517-548 88-125 (130)
215 3qf4_A ABC transporter, ATP-bi 35.6 16 0.00056 40.2 2.6 26 278-305 364-389 (587)
216 3sop_A Neuronal-specific septi 35.4 12 0.00042 37.1 1.4 15 288-302 5-19 (270)
217 1fnn_A CDC6P, cell division co 35.1 14 0.00047 36.7 1.7 17 285-303 46-62 (389)
218 3cr8_A Sulfate adenylyltranfer 35.0 10 0.00035 42.0 0.9 38 281-320 367-409 (552)
219 2dpy_A FLII, flagellum-specifi 34.9 12 0.00041 40.1 1.3 22 281-304 155-176 (438)
220 3hr8_A Protein RECA; alpha and 34.5 12 0.00041 39.3 1.2 22 281-304 59-80 (356)
221 2ph1_A Nucleotide-binding prot 34.5 13 0.00045 35.8 1.4 35 272-317 17-54 (262)
222 3n70_A Transport activator; si 34.1 9.8 0.00034 33.5 0.4 13 292-304 31-43 (145)
223 1q3t_A Cytidylate kinase; nucl 33.9 18 0.00062 34.3 2.2 17 288-304 19-35 (236)
224 3eie_A Vacuolar protein sortin 33.8 9.9 0.00034 38.0 0.4 17 286-304 54-70 (322)
225 1zd8_A GTP:AMP phosphotransfer 33.7 14 0.00049 34.6 1.5 18 287-304 9-26 (227)
226 3a4m_A L-seryl-tRNA(SEC) kinas 33.7 15 0.00053 35.6 1.7 34 287-320 6-43 (260)
227 3crm_A TRNA delta(2)-isopenten 33.4 14 0.00047 38.5 1.4 19 287-305 7-25 (323)
228 2chg_A Replication factor C sm 33.2 15 0.0005 32.7 1.4 14 291-304 44-57 (226)
229 2pbr_A DTMP kinase, thymidylat 33.0 16 0.00055 32.5 1.6 17 288-304 3-19 (195)
230 1p5z_B DCK, deoxycytidine kina 32.9 16 0.00056 35.2 1.8 27 285-311 24-51 (263)
231 3uk6_A RUVB-like 2; hexameric 32.9 16 0.00055 36.4 1.7 20 283-304 70-89 (368)
232 1j8m_F SRP54, signal recogniti 32.8 13 0.00044 37.7 1.0 36 283-320 98-136 (297)
233 1tl2_A L10, protein (tachylect 32.8 74 0.0025 32.1 6.5 30 314-345 127-162 (236)
234 1qhl_A Protein (cell division 32.7 8.6 0.00029 37.7 -0.2 13 292-304 34-46 (227)
235 1ltq_A Polynucleotide kinase; 32.6 17 0.00058 35.4 1.9 25 287-311 4-29 (301)
236 1xjc_A MOBB protein homolog; s 32.5 15 0.00051 34.7 1.4 27 291-317 10-39 (169)
237 1njg_A DNA polymerase III subu 32.4 15 0.00053 32.8 1.4 13 292-304 52-64 (250)
238 2pt5_A Shikimate kinase, SK; a 32.2 15 0.00053 32.2 1.4 17 288-304 3-19 (168)
239 1sxj_C Activator 1 40 kDa subu 32.2 13 0.00043 37.3 0.9 14 291-304 52-65 (340)
240 1xwi_A SKD1 protein; VPS4B, AA 32.1 11 0.00037 38.1 0.4 18 285-304 47-64 (322)
241 1p9r_A General secretion pathw 32.1 18 0.00061 38.6 2.1 33 288-321 170-206 (418)
242 3dl0_A Adenylate kinase; phosp 32.0 17 0.00057 33.6 1.6 40 594-633 166-211 (216)
243 3ux8_A Excinuclease ABC, A sub 31.9 18 0.00061 40.3 2.1 24 278-303 343-366 (670)
244 3a8t_A Adenylate isopentenyltr 31.5 17 0.00059 38.2 1.8 31 287-320 42-73 (339)
245 3ea0_A ATPase, para family; al 31.5 15 0.00052 34.3 1.2 36 272-318 3-42 (245)
246 2gza_A Type IV secretion syste 31.0 15 0.00052 37.9 1.3 20 282-303 174-193 (361)
247 2ewv_A Twitching motility prot 31.0 19 0.00064 37.5 1.9 40 281-322 134-177 (372)
248 1zak_A Adenylate kinase; ATP:A 30.7 16 0.00055 34.1 1.3 17 288-304 8-24 (222)
249 1w1w_A Structural maintenance 30.4 21 0.00073 37.2 2.3 18 283-302 26-43 (430)
250 1sxj_E Activator 1 40 kDa subu 30.4 14 0.00048 36.6 0.9 13 291-303 42-54 (354)
251 3zvl_A Bifunctional polynucleo 30.3 20 0.00069 37.6 2.1 17 288-304 261-277 (416)
252 3nbx_X ATPase RAVA; AAA+ ATPas 30.2 18 0.00062 39.5 1.7 14 293-306 49-62 (500)
253 3erv_A Putative C39-like pepti 29.9 3.3 0.00011 41.4 -3.7 66 292-360 46-116 (236)
254 3ux8_A Excinuclease ABC, A sub 29.8 21 0.00072 39.7 2.2 22 279-302 40-61 (670)
255 2q6t_A DNAB replication FORK h 29.8 19 0.00066 37.9 1.8 21 282-304 199-219 (444)
256 3co5_A Putative two-component 29.8 11 0.00039 33.1 0.1 15 292-306 34-48 (143)
257 2fn4_A P23, RAS-related protei 29.8 28 0.00097 30.0 2.6 23 280-302 4-26 (181)
258 3k9g_A PF-32 protein; ssgcid, 29.7 18 0.00061 34.7 1.4 37 272-319 26-64 (267)
259 4eaq_A DTMP kinase, thymidylat 29.5 21 0.00071 34.4 1.9 19 286-304 27-45 (229)
260 2ocp_A DGK, deoxyguanosine kin 29.3 19 0.00067 34.1 1.6 19 286-304 3-21 (241)
261 1d2n_A N-ethylmaleimide-sensit 29.3 26 0.0009 33.7 2.5 16 289-304 68-83 (272)
262 2qby_B CDC6 homolog 3, cell di 29.1 20 0.00068 35.6 1.7 19 284-304 46-64 (384)
263 2l4j_A YES-associated protein 29.0 55 0.0019 24.8 3.8 21 309-339 14-34 (46)
264 2hf9_A Probable hydrogenase ni 28.9 12 0.00039 34.6 -0.1 34 287-320 40-75 (226)
265 3jvv_A Twitching mobility prot 28.8 19 0.00064 37.6 1.5 34 287-320 125-162 (356)
266 3pfi_A Holliday junction ATP-d 28.7 14 0.00046 36.6 0.4 14 292-305 62-75 (338)
267 1tue_A Replication protein E1; 28.7 14 0.00048 36.6 0.5 20 285-304 58-77 (212)
268 2ga8_A Hypothetical 39.9 kDa p 28.6 23 0.00079 37.6 2.1 22 282-303 21-42 (359)
269 1oix_A RAS-related protein RAB 28.4 28 0.00095 31.5 2.4 19 285-303 29-47 (191)
270 3cf2_A TER ATPase, transitiona 28.3 17 0.00057 42.4 1.1 32 276-311 233-264 (806)
271 1pui_A ENGB, probable GTP-bind 28.2 24 0.00081 31.9 1.9 22 280-303 23-44 (210)
272 2zej_A Dardarin, leucine-rich 28.2 21 0.00071 31.9 1.5 16 288-303 5-20 (184)
273 2npi_A Protein CLP1; CLP1-PCF1 28.2 19 0.00066 38.8 1.5 22 281-304 136-157 (460)
274 2vhj_A Ntpase P4, P4; non- hyd 27.9 16 0.00055 38.4 0.8 21 282-304 122-142 (331)
275 3q9l_A Septum site-determining 27.8 21 0.00072 33.6 1.5 33 274-317 3-38 (260)
276 2r6a_A DNAB helicase, replicat 27.7 23 0.00078 37.5 2.0 21 282-304 202-222 (454)
277 1g16_A RAS-related protein SEC 27.7 53 0.0018 28.0 4.0 17 286-302 4-20 (170)
278 3hws_A ATP-dependent CLP prote 27.7 20 0.00067 36.3 1.4 16 291-306 57-72 (363)
279 2xb4_A Adenylate kinase; ATP-b 27.7 22 0.00074 33.6 1.6 17 288-304 3-19 (223)
280 3kl4_A SRP54, signal recogniti 27.7 15 0.00051 39.7 0.5 36 285-320 97-135 (433)
281 3t5g_A GTP-binding protein RHE 27.5 26 0.00088 30.7 2.0 22 281-302 2-23 (181)
282 3f9v_A Minichromosome maintena 27.4 19 0.00064 40.0 1.3 18 291-308 333-350 (595)
283 2z4s_A Chromosomal replication 27.3 19 0.00066 38.1 1.3 13 292-304 137-149 (440)
284 1yqt_A RNAse L inhibitor; ATP- 27.3 24 0.00083 38.6 2.1 21 281-303 45-65 (538)
285 2wji_A Ferrous iron transport 27.2 30 0.001 30.3 2.3 18 286-303 4-21 (165)
286 2dhr_A FTSH; AAA+ protein, hex 27.0 18 0.00061 39.6 1.0 24 277-304 60-83 (499)
287 4f4c_A Multidrug resistance pr 26.9 24 0.0008 42.9 2.1 26 278-305 439-464 (1321)
288 3ihw_A Centg3; RAS, centaurin, 26.8 35 0.0012 30.7 2.7 21 282-302 17-37 (184)
289 3ozx_A RNAse L inhibitor; ATP 26.8 22 0.00074 39.1 1.6 21 281-303 292-312 (538)
290 1aky_A Adenylate kinase; ATP:A 26.7 23 0.0008 32.9 1.6 19 287-305 6-24 (220)
291 3llm_A ATP-dependent RNA helic 26.5 25 0.00084 33.3 1.7 15 287-301 78-92 (235)
292 1wms_A RAB-9, RAB9, RAS-relate 26.4 31 0.001 29.9 2.2 21 283-303 5-25 (177)
293 2qp9_X Vacuolar protein sortin 26.2 16 0.00054 37.4 0.4 13 292-304 91-103 (355)
294 1hqc_A RUVB; extended AAA-ATPa 26.1 16 0.00056 35.5 0.5 13 292-304 45-57 (324)
295 2pt7_A CAG-ALFA; ATPase, prote 26.1 21 0.00072 36.5 1.3 20 282-303 170-189 (330)
296 1um8_A ATP-dependent CLP prote 26.0 16 0.00055 37.1 0.4 14 292-305 79-92 (376)
297 2ce2_X GTPase HRAS; signaling 25.9 32 0.0011 29.0 2.2 17 287-303 5-21 (166)
298 3tlx_A Adenylate kinase 2; str 25.8 25 0.00087 33.8 1.7 42 591-632 192-239 (243)
299 1u0l_A Probable GTPase ENGC; p 25.6 28 0.00096 34.8 2.1 19 283-303 169-187 (301)
300 2qgz_A Helicase loader, putati 25.6 27 0.00091 35.2 1.9 20 283-304 152-171 (308)
301 3be4_A Adenylate kinase; malar 25.6 18 0.00062 33.8 0.7 18 287-304 7-24 (217)
302 1wcv_1 SOJ, segregation protei 25.5 17 0.0006 34.8 0.5 37 272-319 5-44 (257)
303 2wjg_A FEOB, ferrous iron tran 25.5 41 0.0014 29.6 2.9 20 284-303 6-25 (188)
304 3fkq_A NTRC-like two-domain pr 25.4 24 0.00084 36.2 1.6 37 272-319 142-181 (373)
305 3pg5_A Uncharacterized protein 25.2 18 0.00062 37.2 0.6 34 273-317 1-37 (361)
306 3d8b_A Fidgetin-like protein 1 25.2 17 0.00058 37.1 0.4 14 292-305 124-137 (357)
307 1ofh_A ATP-dependent HSL prote 25.2 24 0.00081 33.9 1.4 13 292-304 57-69 (310)
308 2ce7_A Cell division protein F 24.9 20 0.00068 39.0 0.8 24 277-304 45-68 (476)
309 1e4v_A Adenylate kinase; trans 24.9 24 0.00081 32.8 1.3 24 593-616 161-184 (214)
310 2qag_B Septin-6, protein NEDD5 24.7 35 0.0012 36.8 2.7 22 281-302 38-59 (427)
311 2c9o_A RUVB-like 1; hexameric 24.7 17 0.0006 38.3 0.4 15 291-305 69-83 (456)
312 4i1u_A Dephospho-COA kinase; s 24.6 25 0.00086 34.3 1.5 27 272-311 8-34 (210)
313 1xp8_A RECA protein, recombina 24.4 24 0.00082 36.9 1.3 22 281-304 72-93 (366)
314 1g8p_A Magnesium-chelatase 38 24.4 18 0.0006 35.7 0.3 13 292-304 52-64 (350)
315 1tf7_A KAIC; homohexamer, hexa 24.3 22 0.00075 38.4 1.0 22 281-304 279-300 (525)
316 3pih_A Uvrabc system protein A 24.2 25 0.00085 41.5 1.6 26 276-303 17-42 (916)
317 2orw_A Thymidine kinase; TMTK, 24.1 29 0.001 32.3 1.8 19 283-303 3-21 (184)
318 2xj4_A MIPZ; replication, cell 24.1 23 0.00079 34.7 1.1 31 275-316 6-39 (286)
319 1ky3_A GTP-binding protein YPT 23.9 37 0.0013 29.3 2.3 21 283-303 6-26 (182)
320 3e05_A Precorrin-6Y C5,15-meth 23.9 1.9E+02 0.0064 26.1 7.1 77 40-116 120-197 (204)
321 1tl2_A L10, protein (tachylect 23.9 74 0.0025 32.2 4.7 79 286-377 14-102 (236)
322 4edh_A DTMP kinase, thymidylat 23.8 31 0.0011 33.1 1.9 19 286-304 7-25 (213)
323 1r6b_X CLPA protein; AAA+, N-t 23.8 28 0.00096 39.0 1.8 30 277-306 480-509 (758)
324 2r8r_A Sensor protein; KDPD, P 23.6 33 0.0011 34.2 2.1 22 282-304 4-25 (228)
325 3m6a_A ATP-dependent protease 23.5 28 0.00095 38.0 1.7 18 288-305 111-128 (543)
326 3u61_B DNA polymerase accessor 23.4 19 0.00067 35.3 0.4 13 292-304 55-67 (324)
327 2ffh_A Protein (FFH); SRP54, s 23.3 20 0.00068 38.5 0.5 37 282-320 97-136 (425)
328 1kao_A RAP2A; GTP-binding prot 23.2 40 0.0014 28.5 2.3 17 286-302 4-20 (167)
329 2h92_A Cytidylate kinase; ross 23.2 28 0.00094 32.1 1.4 18 288-305 6-23 (219)
330 1nij_A Hypothetical protein YJ 22.9 36 0.0012 34.2 2.3 39 285-323 4-43 (318)
331 3ugs_B Undecaprenyl pyrophosph 22.9 1E+02 0.0035 30.8 5.5 48 31-78 99-151 (225)
332 1ak2_A Adenylate kinase isoenz 22.8 28 0.00094 32.9 1.3 20 286-305 17-36 (233)
333 1sxj_D Activator 1 41 kDa subu 22.7 24 0.00081 34.7 0.9 13 292-304 65-77 (353)
334 2oap_1 GSPE-2, type II secreti 22.6 36 0.0012 37.2 2.4 19 282-302 259-277 (511)
335 2f9l_A RAB11B, member RAS onco 22.6 39 0.0013 30.5 2.2 18 286-303 6-23 (199)
336 1yqt_A RNAse L inhibitor; ATP- 22.6 29 0.001 38.0 1.6 22 281-304 310-331 (538)
337 3con_A GTPase NRAS; structural 22.6 39 0.0013 29.8 2.2 20 284-303 20-39 (190)
338 2yv5_A YJEQ protein; hydrolase 22.5 36 0.0012 34.2 2.1 18 283-302 165-182 (302)
339 1z06_A RAS-related protein RAB 22.4 41 0.0014 29.9 2.3 21 283-303 18-38 (189)
340 3ozx_A RNAse L inhibitor; ATP 22.3 40 0.0014 37.0 2.7 25 277-303 18-43 (538)
341 3te6_A Regulatory protein SIR3 22.3 25 0.00087 36.2 1.0 24 278-303 40-63 (318)
342 3io5_A Recombination and repai 22.3 28 0.00094 36.8 1.3 20 281-303 27-46 (333)
343 2ygr_A Uvrabc system protein A 22.2 32 0.0011 41.1 2.0 26 276-303 39-64 (993)
344 3g5u_A MCG1178, multidrug resi 22.2 34 0.0012 41.4 2.2 26 278-305 411-436 (1284)
345 2erx_A GTP-binding protein DI- 22.2 43 0.0015 28.5 2.3 18 285-302 3-20 (172)
346 2o5v_A DNA replication and rep 22.2 40 0.0014 35.2 2.5 19 281-302 25-43 (359)
347 3pvs_A Replication-associated 22.2 21 0.00072 38.2 0.4 14 292-305 57-70 (447)
348 1g3q_A MIND ATPase, cell divis 22.1 32 0.0011 32.0 1.5 23 294-316 12-37 (237)
349 2vf7_A UVRA2, excinuclease ABC 21.9 34 0.0012 40.0 2.1 26 276-303 29-54 (842)
350 4hvk_A Probable cysteine desul 21.8 84 0.0029 30.3 4.6 41 40-81 47-91 (382)
351 2zan_A Vacuolar protein sortin 21.7 22 0.00075 37.7 0.4 13 292-304 174-186 (444)
352 1c1y_A RAS-related protein RAP 21.5 45 0.0015 28.3 2.3 17 286-302 4-20 (167)
353 3pqc_A Probable GTP-binding pr 21.5 30 0.001 30.3 1.3 20 284-303 22-41 (195)
354 1sxj_A Activator 1 95 kDa subu 21.5 38 0.0013 36.4 2.2 15 291-305 83-97 (516)
355 2r6f_A Excinuclease ABC subuni 21.3 35 0.0012 40.7 2.0 26 276-303 37-62 (972)
356 3j16_B RLI1P; ribosome recycli 21.3 38 0.0013 37.9 2.3 20 281-302 101-120 (608)
357 2ged_A SR-beta, signal recogni 21.1 33 0.0011 30.4 1.4 20 284-303 47-66 (193)
358 2bjv_A PSP operon transcriptio 21.1 23 0.00078 33.9 0.4 13 292-304 36-48 (265)
359 3bgw_A DNAB-like replicative h 21.1 35 0.0012 36.5 1.8 21 282-304 196-216 (444)
360 3vfd_A Spastin; ATPase, microt 21.1 23 0.00078 36.3 0.4 19 284-304 149-167 (389)
361 3ml6_A Chimeric complex betwee 21.0 94 0.0032 32.9 5.1 62 37-107 40-105 (385)
362 3tw8_B RAS-related protein RAB 20.8 50 0.0017 28.5 2.5 21 283-303 7-27 (181)
363 4bas_A ADP-ribosylation factor 20.7 46 0.0016 29.4 2.3 23 281-303 13-35 (199)
364 1u8z_A RAS-related protein RAL 20.4 49 0.0017 27.9 2.3 18 286-303 5-22 (168)
365 4f4c_A Multidrug resistance pr 20.4 40 0.0014 40.9 2.3 24 280-305 1102-1125(1321)
366 2lkc_A Translation initiation 20.2 41 0.0014 29.1 1.8 20 284-303 7-26 (178)
367 1z2a_A RAS-related protein RAB 20.2 50 0.0017 28.1 2.3 19 285-303 5-23 (168)
368 3l8a_A METC, putative aminotra 20.2 1.1E+02 0.0036 31.0 5.1 94 52-169 117-212 (421)
369 3ppl_A Aspartate aminotransfer 20.2 2.8E+02 0.0095 27.9 8.2 107 37-169 79-199 (427)
370 2obl_A ESCN; ATPase, hydrolase 20.1 31 0.001 35.8 1.1 21 282-304 70-90 (347)
No 1
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis, lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB: 3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A 2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A* 3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Probab=100.00 E-value=3.6e-277 Score=2217.86 Aligned_cols=603 Identities=61% Similarity=1.144 Sum_probs=587.5
Q ss_pred ccceecCCcCCCCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccc
Q psy17657 26 EFDLVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDK 105 (652)
Q Consensus 26 ~~~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~r 105 (652)
.+||++|||++||++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||+||||||||||||+||||||+|
T Consensus 14 ~~~v~~g~~~~l~~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~ve~G~~~~L~k~pn~~l~~sdP~DvARve~r 93 (624)
T 3moe_A 14 SAKVIQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNCWLALTDPRDVARIESK 93 (624)
T ss_dssp GGGEEESCTTTSCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSCEECTTSBSCEEECCCTTCCSCCGGG
T ss_pred cceeecCChHhcCHHHHHHHHHHHHhcCCCEEEEeCCCHHHHHHHHHHHHHcCCcccccCCCCCEEEeCChhhccccccc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCCCcCCCCCCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhh
Q psy17657 106 TFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASM 185 (652)
Q Consensus 106 TfI~t~~~~da~p~~~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~sm 185 (652)
|||||++++||+|++++| +++++|||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+||||||
T Consensus 94 TfI~t~~~~da~p~~~~g-~~~~nnwm~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~GSp~s~~GVeiTDS~YVv~sm 172 (624)
T 3moe_A 94 TVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGCMKGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASM 172 (624)
T ss_dssp EEEECSSHHHHSCCCSSS-CCSSCCEECHHHHHHHHHTTSTTTTTTSEEEEEEEEESCSSCTTCEEEEEEESCHHHHHHH
T ss_pred eEEecCchhhcCCcccCC-cCcccccCCHHHHHHHHHhhCcccccCCeEEEEeeecCCCCCCccceeEEccCcHHHHHhH
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccHHHHHHhcCCCCeeeeeecccCCCCCCCCCC-CCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhh
Q psy17657 186 RIMTRMGKAVLDEIAKNDEFVRALHSVGTPSSGVHEYP-HWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALR 264 (652)
Q Consensus 186 rIMtR~g~~v~~~lg~~~~Fv~cvHSvG~Pl~~~~~~~-~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALR 264 (652)
|||||||++||++|| +++|||||||||+||++++.++ +|||||+|+||+|||++|+||||||||||||||||||||||
T Consensus 173 rIMtR~g~~vld~lg-~~~Fv~clHSvG~pl~~~~~~v~~Wpcnp~k~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALR 251 (624)
T 3moe_A 173 RIMTRMGTSVLEALG-DGEFIKCLHSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALR 251 (624)
T ss_dssp HHHSEESHHHHHHHT-TCCCEEEEEECSCCSSCSSCCBTTBCCCGGGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTH
T ss_pred HHHhhCCHHHHHhhc-CCCeeeeecccCCCCCCCCccCCCCCCCCCceEEEEecccCeEEEecCCcCcchhhhHHHHHHH
Confidence 999999999999999 5799999999999999996655 89999999999999999999999999999999999999999
Q ss_pred hhhcccc-------ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCC
Q psy17657 265 INQVKEP-------NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPE 337 (652)
Q Consensus 265 iAS~~ar-------HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE 337 (652)
|||+||| ||||||||||+||++||||||||||||||||||.||+||||||||||||||||||+||||||||||
T Consensus 252 iAS~~Ar~EGWLAEHMlIlgit~P~G~~~yiaaAFPSaCGKTnlAMl~p~~~Gwkve~vGDDIAwm~~~~dG~l~AiNPE 331 (624)
T 3moe_A 252 IASRLAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIAWMKFDAQGNLRAINPE 331 (624)
T ss_dssp HHHHHHHHHTCEEESCEEEEEECTTSCEEEEEEECCTTSSHHHHHTCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCC
T ss_pred HHHHHhhhcccHHHhHHHheecCCCCcEEEEEEEcccccccccHhhcCCCCCCceeEEecccEEEEEECCCccEEeecCC
Confidence 9999998 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeecCCCCCCCCHHHHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCccccc
Q psy17657 338 SGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVP 417 (652)
Q Consensus 338 ~GfFGVapGtn~~tnP~am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~p 417 (652)
+||||||||||++||||||++|++|+||||||+|+||+||||||++++|++.+++||+|++|++++++||||||||||+|
T Consensus 332 ~GfFGvapGt~~~tnp~am~~l~~n~IFTNVa~t~dG~v~WeG~~~~~p~~~~~~dw~G~~w~~~~~~p~aHPNsRft~p 411 (624)
T 3moe_A 332 NGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTP 411 (624)
T ss_dssp SEEEEECTTCSTTTCHHHHHHTTBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTSSSCSSCTTCEEEEE
T ss_pred CCeeeecCCCCCccCHHHHHhhcCCceEeeeEECCCCCeecCCCCCCCCCCcceeeCCCCCCCCCCCCcCCCCccccccc
Confidence 99999999999999999999999999999999999999999999999887789999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCceeEEEEecccCCCCCcceEeeCCCcchhhhhccchhhhhhcccccCcceecCCcccCCCCCCC
Q psy17657 418 AAECPAMDPDWQSPQGVPISAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYN 497 (652)
Q Consensus 418 a~qcp~idp~wedP~GVPIsAiiFGGRr~~tvPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~~g~v~~DPmAMlpF~gyn 497 (652)
++|||+|||+||||+|||||||||||||++|||||+|||||+||||+||+|+||+||||+|++|+|||||||||||||||
T Consensus 412 ~~qcp~~~p~we~p~GVpIsaiiFGGRr~~~vPlV~ea~~W~hGV~~gA~m~SE~TAAa~~~~g~vr~DPmAMlPF~gYn 491 (624)
T 3moe_A 412 ASQCPIIDPAWESPEGVPIEGIIFGGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAGAEHKGKVIMHDPFAMRPFFGYN 491 (624)
T ss_dssp GGGCTTBCTTTTCTTCEEEEEEEEECCCSSSCCSEEECSSHHHHHHHHHTCEEECC------CCCEEECGGGCTTTCSSC
T ss_pred HhhCCCCCccccCCCCceEEEEEEcccCCCCCCcEEEecCcchhhhhhhhhhhhHhHHhhcCCCcEEECccccCCCCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccceeeCccccCcCCCCCCCcc
Q psy17657 498 FGQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINL 577 (652)
Q Consensus 498 ~gdY~~hWL~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a~eTPiG~iP~~~~~~ldl 577 (652)
|||||+|||+|+++.+.|+||||||||||||++|||||||||||+|||+||++||+|+ +.|++||||+||+| ++|||
T Consensus 492 ~gdY~~HWL~~g~~~~~k~PkIF~VNwFrkd~~GkFLWPGfgeN~RVL~Wi~~R~~G~-~~a~eTpIG~iP~~--~~ldl 568 (624)
T 3moe_A 492 FGKYLAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGE-DSAKLTPIGYVPKE--DALNL 568 (624)
T ss_dssp HHHHHHHHHHGGGSTTCBCCEEEEECSCCBCTTSCBSSCCGGGGHHHHHHHHHHHTTC-SCEEEETTEEEECT--TTSCC
T ss_pred HHHHHHHHHHhcccCCCCCCcEEEEeeeEECCCCCCcCCCCcchhHHHHHHHHHhcCc-cceeecCCeecCCc--cccCc
Confidence 9999999999999976799999999999999999999999999999999999999999 99999999999999 99999
Q ss_pred CCCCCCCCCChhhhHHHhhccChHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHhh
Q psy17657 578 TDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSY 640 (652)
Q Consensus 578 ~gL~~~~k~~~~~~~~~l~~v~~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl~~~ 640 (652)
+||+ ++|+++||+||+++|++|++++++||++|||++||+||++||++|++||++|
T Consensus 569 ~gL~-------~~d~~~l~~v~~~~W~~E~~~i~~~f~~~~g~~lP~el~~el~~l~~Rl~~~ 624 (624)
T 3moe_A 569 KGLG-------DVNVEELFGISKEFWEKEVEEIDKYLEDQVNADLPYEIERELRALKQRISQM 624 (624)
T ss_dssp TTCT-------TSCHHHHHCCCHHHHHHHHHHHHHHHHHHTGGGCCHHHHHHHHHHHHHHHTC
T ss_pred ccCC-------HHHHHHHcCcCHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHhhC
Confidence 9996 5899999999999999999999999988999999999999999999999875
No 2
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer, lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB: 2fah_A* 2qzy_A*
Probab=100.00 E-value=2.4e-267 Score=2139.50 Aligned_cols=598 Identities=57% Similarity=1.097 Sum_probs=572.0
Q ss_pred cCCcCCCCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEe
Q psy17657 31 HGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICT 110 (652)
Q Consensus 31 ~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t 110 (652)
+-|+++||++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++||.|||||||+||||+||||||+||||||
T Consensus 2 ~~~~~~l~~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~v~~G~~~~L~k~~n~~l~~sdp~DvARve~rTfI~t 81 (608)
T 2faf_A 2 STSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNCWLARTDPRDVARVESKTVLVT 81 (608)
T ss_dssp BSCCTTSCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECTTSBSCEEECCCTTCSSCCGGGEEEEC
T ss_pred ccchhhcCHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhCCCeeecCCCCCceeccCChhhcceeccceEEec
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcCCCC-CCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcc
Q psy17657 111 VNRSDVVPDH-KPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMT 189 (652)
Q Consensus 111 ~~~~da~p~~-~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMt 189 (652)
++++||+|+| ++|++++|+|||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+||||||||||
T Consensus 82 ~~~~dagp~n~~~g~~~~~~nw~~p~e~~~~l~~~f~G~M~GRTMYViPFsMGP~gsp~s~~GVeiTDS~YVv~smriMt 161 (608)
T 2faf_A 82 PEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGCMAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMT 161 (608)
T ss_dssp SSGGGTSCCCCTTCCCCCSCCEECHHHHHHHHHHHSTTTTTTSEEEEEEEEESCTTCTTCEEEEEEESCHHHHHHHHHHS
T ss_pred CchhhcCCCCccccccccccccCCHHHHHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHH
Confidence 9999999999 899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHhcCCCCeeeeeecccCCCCCC-CCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhc
Q psy17657 190 RMGKAVLDEIAKNDEFVRALHSVGTPSSGV-HEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQV 268 (652)
Q Consensus 190 R~g~~v~~~lg~~~~Fv~cvHSvG~Pl~~~-~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~ 268 (652)
|||++||+.||+ +|||||||||+||+.. +.+++|||||+++||+|||++|+|||||||||||||||||||||||||+
T Consensus 162 R~g~~v~~~lg~--~Fv~~vHSvG~pl~~~~~~~~~WPcn~~~~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~ 239 (608)
T 2faf_A 162 RVGPAVLQRLDD--DFVRCLHSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIASR 239 (608)
T ss_dssp EESHHHHTTCCS--CCEEEEEECSCCSSCSSCCSTTCCCCGGGCEEEEEGGGTEEEEESCCSHHHHCTCCCCCTTHHHHH
T ss_pred hcCHHHHHHhhC--ccceeecccCCcCCcccccCCCCccCCCccEEEEECCCCeEEEecCCcCcchhhhhHHHHHHHHHH
Confidence 999999999995 9999999999999655 9999999999999999999999999999999999999999999999999
Q ss_pred ccc-------ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCcee
Q psy17657 269 KEP-------NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFF 341 (652)
Q Consensus 269 ~ar-------HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfF 341 (652)
||| ||||||||||+|+++||||||||||||||||||.|++||||||||||||||||||+||+|||||||+|||
T Consensus 240 ~ar~EGWLAEHMlIlgvt~p~g~~~yiaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dG~l~AiNPE~GfF 319 (608)
T 2faf_A 240 MAQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDIAWMKFDDEGRLRAINPERGFF 319 (608)
T ss_dssp HHHHHTCEEESCEEEEEECTTSCEEEEEEECSSCTTSCCGGGCCCSSTTCEEEEEESSCEEEEECTTSBEEEECCCSEEE
T ss_pred HhhhcChHHHHHHHheecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceeeeEECCCCcEEEecCCCCee
Confidence 997 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCCHHHHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCC
Q psy17657 342 GVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAEC 421 (652)
Q Consensus 342 GVapGtn~~tnP~am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qc 421 (652)
|||||||++||||||++|.+|+||||||+|+||+||||||++++++.++++||+|++|++++++||||||||||+|++||
T Consensus 320 GvapGt~~~tnP~am~tl~~n~IFTNVa~t~dG~v~WeG~~~~~~p~~~~~dw~G~~w~~~~g~paaHpNsRft~p~~qc 399 (608)
T 2faf_A 320 GVAPGTSSRTNPNAMATIARNTIFTNVGLRSDGGVYWDGLDEPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQC 399 (608)
T ss_dssp EECTTCCTTTCHHHHHHTSBSCEEESCEEETTSCEECTTCCCCCCTTCCEECTTSSEECTTCSSCSSCTTCEEEEEGGGC
T ss_pred EecCCCCCCcCHHHHHHhccCceeeeeEEcCCCceecCCCCCCCCCCccccccCCCccCCCCCCcCcCCccceEeEHhhC
Confidence 99999999999999999999999999999999999999999886334589999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCceeEEEEecccCCCCCcceEeeCCCcchhhhhccchhhhhhcccccCcceecCCcccCCCCCCChHHH
Q psy17657 422 PAMDPDWQSPQGVPISAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQY 501 (652)
Q Consensus 422 p~idp~wedP~GVPIsAiiFGGRr~~tvPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~~g~v~~DPmAMlpF~gyn~gdY 501 (652)
|+|||+||||+|||||||||||||++|||||+|||||+||||+||+|+||+||||+|++|++||||||||||||||||||
T Consensus 400 p~id~~we~p~GVpIsaiiFggRR~~~vPlV~ea~~W~hGV~~Gasm~Se~Taaa~g~~~~vr~DPfAmlpF~gyn~gdY 479 (608)
T 2faf_A 400 PIMDPRWDDPEGVPIDAIIFGGRRPRGVPLVVEAFGWRHGVFMGSAMRSEATAAAEHKGGRLMHDPFAMRPFFGYNAGRY 479 (608)
T ss_dssp TTBCTTTTCTTCEEEEEEEEEECCSSSSCSEEECSSHHHHHHHHHTCBC------------CCBCGGGCGGGCSSCHHHH
T ss_pred CccCccccCCCCceEEEEEEcccCCCCCCcEEEccCchhhhhhhchhccccchhhcCCCCcEeeCcccccccccCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccceeeCccccCcCCCCCCCccCCCC
Q psy17657 502 LQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINLTDLY 581 (652)
Q Consensus 502 ~~hWL~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a~eTPiG~iP~~~~~~ldl~gL~ 581 (652)
|+|||+|+++.+.|+||||||||||||+||||||||||||+|||+||++||+|+ +.|++||||+||+| ++|||+||+
T Consensus 480 ~~HWL~~g~~~~~k~PkIF~VNwFrk~~~GkflwPGfgeN~RvL~Wi~~R~~G~-~~a~eTpiG~iP~~--~~L~l~gl~ 556 (608)
T 2faf_A 480 LEHWLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWIFGRIQGR-DTARPTPIGWVPKE--GDLDLGGLP 556 (608)
T ss_dssp HHHHHHHTTSTTCBCCEEEEEESCCBCTTSSBSSCCGGGHHHHHHHHHHHHTTC-SCEEEETTEEEECT--TSSCCTTCT
T ss_pred HHHHhhhccccCCCCCcEEEEeeeeECCCCCCCCCCCccchhHHHHHHHHhcCc-cCceeCCCcccCCc--cccCCCCcC
Confidence 999999999865699999999999999999999999999999999999999999 99999999999999 999999993
Q ss_pred CCCCCChhhhHHHhhccChHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHhh
Q psy17657 582 EDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSY 640 (652)
Q Consensus 582 ~~~k~~~~~~~~~l~~v~~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl~~~ 640 (652)
+++|++||+|++++|++|++++++||++|+|++||+||+++|++|++||++|
T Consensus 557 -------~~~~~~l~~v~~~~w~~e~~~~~~~f~~~~g~~lP~el~~~l~~l~~rl~~~ 608 (608)
T 2faf_A 557 -------GVDYSQLFPMEKGFWEEECRQLREYYGENFGADLPRDVMAELEGLEERVRKM 608 (608)
T ss_dssp -------TCCHHHHSCCCHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHcCcCHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999999999985489999999999999999999753
No 3
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate; GTP-dependent, signaling protein, lyase; 2.30A {Corynebacterium glutamicum}
Probab=100.00 E-value=6.4e-263 Score=2108.37 Aligned_cols=584 Identities=45% Similarity=0.874 Sum_probs=562.8
Q ss_pred CCCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccc--ccccCeEEeccCCCCccccccceEEEecCC
Q psy17657 36 SVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRV--RKHVNCWLASTNPADVARVEDKTFICTVNR 113 (652)
Q Consensus 36 ~l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L--~k~~n~~l~rsdP~DvARve~rTfI~t~~~ 113 (652)
..|++|++||+|+|+|||||+|||||||+||+++|+++|+++|+++|| .|||||||+||||+||||||+||||||+++
T Consensus 15 ~~n~~l~~~V~e~a~L~~Pd~I~icdGS~eE~~~l~~~~v~~G~~~~L~~~k~~n~~l~~sdp~DvARve~rTfI~t~~~ 94 (610)
T 2zci_A 15 TKNKELLNWIADAVELFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRPNSYLARSNPSDVARVESRTFICSEKE 94 (610)
T ss_dssp CCCHHHHHHHHHHHHHHCCSEEEECCCCHHHHHHHHHHHHHTTSEEECCTTTSTTCEEECCCGGGSSCCGGGEEECCSST
T ss_pred CcCHHHHHHHHHHHHhcCCCEEEEcCCCHHHHHHHHHHHHhCCCeeecCCCCCCceeecCCChhhcceeccceEEecCch
Confidence 478899999999999999999999999999999999999999999999 589999999999999999999999999999
Q ss_pred CCcCCCCCCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcccccH
Q psy17657 114 SDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGK 193 (652)
Q Consensus 114 ~da~p~~~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMtR~g~ 193 (652)
+||+|+| |||+|+||+++|+++|+|||+|||||||||||||+|||+|++|||||||+|||||||||||||+
T Consensus 95 ~dagptn---------nw~~p~e~~~~l~~~f~G~M~GRTMYViPfsMGP~gsp~s~~GVeiTDS~YVv~smrIMtR~g~ 165 (610)
T 2zci_A 95 EDAGPTN---------NWAPPQAMKDEMSKHYAGSMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMGI 165 (610)
T ss_dssp TTTCTTS---------CCCCHHHHHHHHHHHHTTTTTTSEEEEEEEEESCTTCSSCEEEEEEESCHHHHHHHHHHSEESH
T ss_pred hhcCCCc---------CccCHHHHHHHHHHhCCcccCCCEEEEEeeecCCCCCCcccceeEeeCCHHHHHHHHHHHhcCH
Confidence 9999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCeeeeeecccCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc--
Q psy17657 194 AVLDEIAKNDEFVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-- 271 (652)
Q Consensus 194 ~v~~~lg~~~~Fv~cvHSvG~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-- 271 (652)
+||+.||++++|||||||||+||..++.+++|||||+ +||+|||++|+|||||||||||||||||||||||||+|||
T Consensus 166 ~v~~~lg~~~~Fv~~vHSvG~pl~~~~~dv~wPc~~~-~~I~h~pe~r~I~S~GSgYGGNaLLGKKcfALRiAs~~ar~E 244 (610)
T 2zci_A 166 EALDKIGANGSFVRCLHSVGAPLEPGQEDVAWPCNDT-KYITQFPETKEIWSYGSGYGGNAILAKKCYALRIASVMAREE 244 (610)
T ss_dssp HHHHHHTTTCCCEEEEEECSCCCCSSCCCCSSCCCSS-CEEEEETTTTEEEEESCCSHHHHCTCCCCCTTHHHHHHHHHH
T ss_pred HHHHHhCCCCCeeeeecccCCcCCCCCcCCCCCCCCc-eEEEEecCcCeEEEecCCcCcchhhhhHHHHHHHHHHHhhhc
Confidence 9999999889999999999999988899999999998 7999999999999999999999999999999999999997
Q ss_pred -----ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCC
Q psy17657 272 -----NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPG 346 (652)
Q Consensus 272 -----HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapG 346 (652)
||||||||||+|+++||||||||||||||||||.|++||||||||||||||||||+|| |||||||+||||||||
T Consensus 245 GWLAEHMlIlgvt~P~g~~~yvaaAfPSacGKTnlAMl~p~~~gwkve~vGDDIawm~~~~dG-l~AiNPE~GfFGvapG 323 (610)
T 2zci_A 245 GWMAEHMLILKLINPEGKAYHIAAAFPSACGKTNLAMITPTIPGWTAQVVGDDIAWLKLREDG-LYAVNPENGFFGVAPG 323 (610)
T ss_dssp TCEEECCEEEEEECSSSCEEEEEEECSSSHHHHHHHTCCCSSTTCEEEEEESSCEEEEECSSS-EEEECCCSEEEEECTT
T ss_pred ChHHHHHHHheecCCCCcEEEEEEecccccchhhHhhcCCCCCCceeEEeecceeeEeeCCCc-eeEecCCCceeEecCC
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred CCCCCCHHHHhhc-cCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCC
Q psy17657 347 TSCNTNPQAMQTI-FHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMD 425 (652)
Q Consensus 347 tn~~tnP~am~~l-~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~id 425 (652)
||++||||||++| .+|+||||||+|+||+||||||++++|. +++||+|++|++++++||||||||||+|++|||+||
T Consensus 324 t~~~tnP~am~~~~~~n~IFtNVa~t~dG~v~WeG~~~~~p~--~~~dw~G~~w~~~~~~paaHpNsRft~p~~qcp~i~ 401 (610)
T 2zci_A 324 TNYASNPIAMKTMEPGNTLFTNVALTDDGDIWWEGMDGDAPA--HLIDWMGNDWTPESDENAAHPNSRYCVAIDQSPAAA 401 (610)
T ss_dssp CCTTTCHHHHHHHTTCCCEEESCEEETTSCEECTTCSSCCCS--CEECTTSCEECTTCSSCSSCTTCEEEEEGGGCTTBC
T ss_pred CCCCcCHHHHHHhccCCceEeeeEEcCCCcccCCCCCCCCCC--cccccCCCccCCCCCCcCcCCccceEeEHhhCCccC
Confidence 9999999999999 9999999999999999999999998774 899999999999999999999999999999999999
Q ss_pred CCCCCCCCceeEEEEecccCCCCCcceEeeCCCcchhhhhccchhhhhhc-ccccCcceecCCcccCCCCCCChHHHHHH
Q psy17657 426 PDWQSPQGVPISAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAA-AEHKGKAILNDPFAMRPFFGYNFGQYLQH 504 (652)
Q Consensus 426 p~wedP~GVPIsAiiFGGRr~~tvPLV~ea~~W~HGVf~gAsm~SE~TAA-a~g~~g~v~~DPmAMlpF~gyn~gdY~~h 504 (652)
|+||||+|||||||||||||++|||||+|||||+||||+||+|+||+||| |+|++|++|||||||||||||||||||+|
T Consensus 402 ~~we~p~GVpIsaiiFggRR~~~vPlV~ea~~W~hGV~~Gasm~Se~taa~a~g~~~~vr~DPfAmlpF~gyn~gdY~~H 481 (610)
T 2zci_A 402 PEFNDWEGVKIDAILFGGRRADTVPLVTQTYDWEHGTMVGALLASGQTAASAEAKVGTLRHDPMAMLPFIGYNAGEYLQN 481 (610)
T ss_dssp GGGGCTTCEECSEEEEECCCSSSSCSEEECSSHHHHHHHHHTCBCCC--------CCCCCBCGGGCTTTCCSCHHHHHHH
T ss_pred ccccCCCCceEEEEEEcccCCCCCCcEEEccCchhhhhhhchhcccccchhhcCCCceEeeCcccccccCcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred HHccccCCCCCCCcEEEeeeeecCCCCCcccCCCCchhHHHHHHHHhhcCCccceeeCccccCcCCCCCCCccCCCCCCC
Q psy17657 505 WLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINLTDLYEDD 584 (652)
Q Consensus 505 WL~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~a~eTPiG~iP~~~~~~ldl~gL~~~~ 584 (652)
||+|+++.+.|+||||||||||||+||||||||||||+|||+||++||+|+ +.|++||||+||+| ++|||+|||++
T Consensus 482 WL~~g~~~~~k~PkIF~VNwFrkd~~GkflwPGfgeN~RvL~Wi~~R~~G~-~~a~eTpiG~iP~~--~~L~l~gld~~- 557 (610)
T 2zci_A 482 WIDMGNKGGDKMPSIFLVNWFRRGEDGRFLWPGFGDNSRVLKWVIDRIEGH-VGADETVVGHTAKA--EDLDLDGLDTP- 557 (610)
T ss_dssp HHHHHHHHGGGSCEEEEECTTCBCTTSCBSSCCGGGHHHHHHHHHHHHHTC-CCCEECSSSEECCG--GGSCCSCCCSC-
T ss_pred HhhhcccCCCCCCcEEEEeeeeECCCCCCCCCCCccchhhHHHHHHHhcCc-cCceeCCCcccCCc--cccCCcCCCCC-
Confidence 999999854699999999999999999999999999999999999999999 99999999999999 99999999854
Q ss_pred CCChhhhHHHhhccChHHHHHHHHHHHHHHhhhhCCCCCHHHHHHHHHHHHHHHhhc
Q psy17657 585 KPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYH 641 (652)
Q Consensus 585 k~~~~~~~~~l~~v~~~~W~~E~~~i~~~~~~~~g~~lP~~i~~~l~~l~~rl~~~~ 641 (652)
+++|++||+|++++|++|++++++||+ ++|++||+||+++|++|++||++|+
T Consensus 558 ----~~~~~~l~~v~~~~w~~e~~~~~~~f~-~~g~~lP~el~~~l~~l~~rl~~~~ 609 (610)
T 2zci_A 558 ----IEDVKEALTAPAEQWANDVEDNAEYLT-FLGPRVPAEVHSQFDALKARISAAH 609 (610)
T ss_dssp ----CTTHHHHHCCCHHHHHHTHHHHHHHHH-HTCTTSCHHHHHHHHHHHHHHC---
T ss_pred ----HHHHHHHcCcCHHHHHHHHHHHHHHHH-HhccCcCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999998 5699999999999999999998765
No 4
>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*
Probab=100.00 E-value=1.6e-92 Score=772.39 Aligned_cols=463 Identities=18% Similarity=0.216 Sum_probs=381.5
Q ss_pred HHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCCCCCccC
Q psy17657 47 ESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKS 126 (652)
Q Consensus 47 e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~~Gv~~ 126 (652)
+.+.||+|++||||+||+++++. +++.|+..+++ +|+++++|+| ++||++++||||++++.+ |++-=|
T Consensus 5 ~~~~l~~~~~v~~n~~~~~l~e~----a~~~g~g~~~~--~g~~~~~tg~-~tgRsp~~~fIv~~~~~~--~~~~w~--- 72 (529)
T 1j3b_A 5 EALGIHPKKRVFWNTVSPVLVEH----TLLRGEGLLAH--HGPLVVDTTP-YTGRSPKDKFVVREPEVE--GEIWWG--- 72 (529)
T ss_dssp GGGTCCCSSCEEESCCHHHHHHH----HHHTTSCEECT--TSCEEECCTT-CCSCCGGGEEEECCTTTT--TTSCBT---
T ss_pred hhccCCCCCeEEECCChHHHHHH----HHHcCCCEECC--CCCEEeCCCC-cccCCCCceEEeCCCCcC--Cccccc---
Confidence 35789999999999999998854 88999998874 7999999999 899999999999998877 554111
Q ss_pred cccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcc-c-c----cHH------
Q psy17657 127 QLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMT-R-M----GKA------ 194 (652)
Q Consensus 127 ~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMt-R-~----g~~------ 194 (652)
-.||+.++++.++|.++|.+||+||+|||+||+|| .++++++.+++||||+|++++|++|+ | + +.+
T Consensus 73 -~~n~~~~~e~f~~l~~~~~~~m~gr~lyV~~~~~G-~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~~p 150 (529)
T 1j3b_A 73 -EVNQPFAPEAFEALYQRVVQYLSERDLYVQDLYAG-ADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVP 150 (529)
T ss_dssp -TTBEEECHHHHHHHHHHHHHHHHTSCEEEEEEEEC-SSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCC
T ss_pred -cccCcCCHHHHHHHHHHHHHHhcCCcEEEEEEeee-CCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccCCC
Confidence 13899999999999999999999999999999999 99999999999999999999999999 9 5 444
Q ss_pred HHHHhcCCCCeeeeeecccCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc---
Q psy17657 195 VLDEIAKNDEFVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP--- 271 (652)
Q Consensus 195 v~~~lg~~~~Fv~cvHSvG~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar--- 271 (652)
+|..++ ..+|++|+||+|+ |++ ++|+|+|++++|||+||+|||| +||++|||++++++
T Consensus 151 d~~i~~-~p~f~~~~~~~G~-------------~s~-~~i~~~~~~~~i~i~Gt~Y~Ge----~KK~~l~i~~~~~~~~G 211 (529)
T 1j3b_A 151 GFTVVH-APYFQAVPERDGT-------------RSE-VFVGISFQRRLVLIVGTKYAGE----IKKSIFTVMNYLMPKRG 211 (529)
T ss_dssp SEEEEE-ETTCCCCHHHHCC-------------SSS-CEEEEETTTTEEEEESCCCTHH----HHHHHHHHHHHHGGGGT
T ss_pred CEEEEe-CCCcccCcccCCC-------------CCc-eEEEEECccCEEEEeCCccCcc----hHHHHHHHHHHHHHHCC
Confidence 455566 3789999999994 554 7999999999999999999999 88999999999996
Q ss_pred ----ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecce-EEEEeCCCccEEEeCCCCceeeecCC
Q psy17657 272 ----NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI-AWMKFDEEGNLRAINPESGFFGVAPG 346 (652)
Q Consensus 272 ----HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDI-AWmr~~~dGrl~AINPE~GfFGVapG 346 (652)
||++ +++|+|++.+|+| |||||||||||+ |. . ++||||+ +|+ +||++ |||.|+||+++|
T Consensus 212 ~L~~H~sa--~~~~~g~~~~ffG--lSGtGKTtLs~~-p~---r--~lIgDD~~~w~---~~Gv~---n~E~G~y~k~~~ 275 (529)
T 1j3b_A 212 VFPMHASA--NVGKEGDVAVFFG--LSGTGKTTLSTD-PE---R--PLIGDDEHGWS---EDGVF---NFEGGCYAKVIR 275 (529)
T ss_dssp CEEEECEE--EECTTCCEEEEEE--CTTSCHHHHTCB-TT---B--CEEESSEEEEC---SSCEE---ESCSEEEEECTT
T ss_pred eEecccee--eeCCCCcEEEEEc--cccCChhhHhhc-cC---c--ceEECchhhhc---cCcee---cccCceEEEecC
Confidence 9997 5799999999987 999999999998 42 2 7999999 999 69986 899999999999
Q ss_pred CCCCCCHHHHhhc-cCCceeeeeeecCCC-cccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCC
Q psy17657 347 TSCNTNPQAMQTI-FHNTMFTNVGTTSDD-GVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAM 424 (652)
Q Consensus 347 tn~~tnP~am~~l-~kntIFTNVa~t~dG-~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~i 424 (652)
+|.++||++|++| +.|+||+||++++|| .|||+|++. |||+|||.|++|||++
T Consensus 276 ls~~~eP~i~~ai~~~~~ileNV~~d~dg~~v~~~~~~~-------------------------t~N~R~~~P~~~~pn~ 330 (529)
T 1j3b_A 276 LSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSK-------------------------TENTRSSYPIAHLENV 330 (529)
T ss_dssp CCTTTCHHHHHHHSSTTCEEESCEECTTTCCEETTCCSS-------------------------CSCCEEEEEGGGCSSB
T ss_pred CCCcchHHHHHHhCcCCceeEEeEECCCCCcccCCCCCC-------------------------CCCccEEEEHHHCCCC
Confidence 9999999999999 889999999999999 799998643 9999999999999999
Q ss_pred CCCCCCCCCceeEEEEecccCCC-CCcceEeeCCCcchhhhhccchhhhhhccccc-CcceecCC----cccCCCCCCCh
Q psy17657 425 DPDWQSPQGVPISAIIFGGRRPE-GVPLVYEAFDWQHGVFVGASMRSEATAAAEHK-GKAILNDP----FAMRPFFGYNF 498 (652)
Q Consensus 425 dp~wedP~GVPIsAiiFGGRr~~-tvPLV~ea~~W~HGVf~gAsm~SE~TAAa~g~-~g~v~~DP----mAMlpF~gyn~ 498 (652)
++. ++.||| ++|||++||+. ++|||. +++|+||+|+ +.|+.||+++|+ .|++++|| |+|.||++|++
T Consensus 331 ~~~--~~~g~P-~~Iifl~~da~gvlPpV~-~l~~~qa~~~---f~sG~Tak~agtE~Gv~ep~ptFs~~f~~PF~~~~~ 403 (529)
T 1j3b_A 331 VES--GVAGHP-RAIFFLSADAYGVLPPIA-RLSPEEAMYY---FLSGYTARVAGTERGVTEPRATFSACFGAPFLPMHP 403 (529)
T ss_dssp CTT--SEECCE-EEEEEEECCTTSCSCSEE-EECHHHHHHH---HHHCEEEEC---------CEEEECGGGCGGGCSSCH
T ss_pred CCC--CcCCCC-CEEEEEEccCCCCCCCee-cCCHHHHHHH---HHccccccccccccCccccCCcccccccCCccCCCH
Confidence 987 999999 99999999998 789999 8999999998 999999998897 89999999 99999999999
Q ss_pred HHHHHHHHccccCCCCCCCcEEEee--eeecCCCCCcccCCCCchhHHHHHHHHh-----hcCCc--cce-eeCcccc-C
Q psy17657 499 GQYLQHWLDLQKRPNVKLPKIFHVN--WFRKDKDGKFMWPGFGDNIRVLDWIFQR-----VNGNK--TVR-RFSPIGY-I 567 (652)
Q Consensus 499 gdY~~hWL~~g~~~~~k~PkIF~VN--wFrkd~~GkfLWPGfgeN~RVL~WI~~R-----~~G~~--~~a-~eTPiG~-i 567 (652)
++|.+|- +++...+.|++|.|| ||+.. +|...|+-.|.-|. .+|.- +.. ..--.|+ |
T Consensus 404 ~~ya~~L---~~~~~~~~~~v~lVNTgw~gg~---------yg~g~r~~~~~tr~~i~ai~~G~l~~~~~~~~~~fg~~v 471 (529)
T 1j3b_A 404 GVYARML---GEKIRKHAPRVYLVNTGWTGGP---------YGVGYRFPLPVTRALLKAALSGALENVPYRRDPVFGFEV 471 (529)
T ss_dssp HHHHHHH---HHHHHHHCCEEEEEECSEESSS---------TTTSEECCHHHHHHHHHHHHHTGGGGSCEEECTTTCCEE
T ss_pred HHHHHHH---HHhhhhcCCeEEEEcCCcccCc---------cCCCccCCHHHHHHHHHHHhcCCccCCceeECCccCccC
Confidence 9999993 333324679999999 99942 22223321111111 34651 233 3344577 8
Q ss_pred cCCCCCCCccCCCCCCCCCChhhhH--HHhhccChHHHHHHHHHHHHHHhh
Q psy17657 568 PDYHHNVINLTDLYEDDKPNLNVNL--KELFYIDKDFWEQELNAIEKYFND 616 (652)
Q Consensus 568 P~~~~~~ldl~gL~~~~k~~~~~~~--~~l~~v~~~~W~~E~~~i~~~~~~ 616 (652)
|+. +.|++ .+-| ...-+ +++.|.+.++.+.+.|.+
T Consensus 472 p~~------~~gv~-------~~~l~P~~~w~-~~~~y~~~a~~L~~~f~~ 508 (529)
T 1j3b_A 472 PLE------APGVP-------QELLNPRETWA-DKEAYDQQARKLARLFQE 508 (529)
T ss_dssp ESC------BTTBC-------GGGGCGGGGSS-CHHHHHHHHHHHHHHHHH
T ss_pred ccc------CCCCC-------hhhcCcccccC-CHHHHHHHHHHHHHHHHH
Confidence 875 34553 1111 11122 888999999988877764
No 5
>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*
Probab=100.00 E-value=3.2e-46 Score=408.09 Aligned_cols=472 Identities=17% Similarity=0.224 Sum_probs=360.5
Q ss_pred HHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcC----cccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCCC
Q psy17657 46 TESANLCKPKDIHICDGTEEENKAILKKMVDTN----TVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHK 121 (652)
Q Consensus 46 ~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G----~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~ 121 (652)
.+...||.|++||+|.+ .+| |++++++.| ++.+|. ..|..+ .....+++|...++||+.++..+ ++.-
T Consensus 12 ~~~~gi~~~~~v~~n~~-~~~---L~e~al~~~~~~~eeg~l~-~~Gal~-~~tg~~tgRsp~dk~Iv~~~~~~--~~i~ 83 (540)
T 2olr_A 12 LEAYGISDVHDIVYNPS-YDL---LYQEELDPSLTGYERGVLT-NLGAVA-VDTGIFTGRSPKDKYIVRDDTTR--DTFW 83 (540)
T ss_dssp HHHTTCCCCCCEEESCC-HHH---HHHHHHCTTCCGGGCEEEC-TTSCEE-ECCCSCSSCCGGGEEEECSTTTT--TTSC
T ss_pred hhhcCCCCCCeEEeCCC-HHH---HHHHHHhcCCCccccceec-CCCCEE-EcCCCcccCCCCceEEeCCCCCc--cccc
Confidence 35678999999999998 554 899999988 456664 367766 57778999999999999877665 2220
Q ss_pred CCc--cCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcc-cccHHHHHH
Q psy17657 122 PGV--KSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMT-RMGKAVLDE 198 (652)
Q Consensus 122 ~Gv--~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMt-R~g~~v~~~ 198 (652)
=|- ++.-.||..+++.-++|.+++.++|+||+|||+++.+| .++++.....+|||++|+.|.|+.|. |...+.++.
T Consensus 84 w~~~~~~~~~N~~~~~e~f~~l~~~~~~~l~~k~lyv~d~~~G-~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~ 162 (540)
T 2olr_A 84 WADKGKGKNDNKPLSPETWQHLKGLVTRQLSGKRLFVVDAFCG-ANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAG 162 (540)
T ss_dssp CTTSSSSCCSCEEECHHHHHHHHHHHHHHHTTSCEEEEEEEES-SSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHT
T ss_pred cccccccccccCCCCHHHHHHHHHHHHHHHcCCCEEEEeeeee-CChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcC
Confidence 000 11124888889999999999999999999999999999 79999999999999999999999999 998776653
Q ss_pred hcCCCCeeeeeecccCCCCCCCCCCCCCCC---CcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc----
Q psy17657 199 IAKNDEFVRALHSVGTPSSGVHEYPHWPCD---PQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP---- 271 (652)
Q Consensus 199 lg~~~~Fv~cvHSvG~Pl~~~~~~~~WPcn---p~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar---- 271 (652)
. ..||+-- ...-+ ....|.++ ++ ++|+++++++++++.|+.|+||- ||. +||++.+++.
T Consensus 163 ~--~pd~~i~-~~~~~------~~p~f~~~G~~s~-~~v~~~~~~~~~~I~Gt~Y~Gem---KK~-~ftl~n~~l~~~G~ 228 (540)
T 2olr_A 163 F--KPDFIVM-NGAKC------TNPQWKEQGLNSE-NFVAFNLTERMQLIGGTWYGGEM---KKG-MFSMMNYLLPLKGI 228 (540)
T ss_dssp C--CCSEEEE-EETTC------CCTTTTTTTCSSS-CEEEEETTTTEEEEESCCCTHHH---HHH-HHHHHHHHTGGGTC
T ss_pred C--CCCEEEE-EeccC------CCCCcccCCccCc-cEEEEEccCCeEEEeCCcCchHh---hhh-HHHHhHHHHHHCCc
Confidence 2 3456321 11000 11236555 55 69999999999999999999993 666 9999998883
Q ss_pred ---ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCC
Q psy17657 272 ---NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTS 348 (652)
Q Consensus 272 ---HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn 348 (652)
||.+. .+++|++.+|.| +||||||+|+|. | + -.+||||+ +++ ++||. .|+|.|.|+.+.+.|
T Consensus 229 L~mH~san--vg~~g~~~lffG--lSGtGKTTLs~d-~---~--r~lIgDDe-~~w-~~~Gv---fn~EgGcyak~i~Ls 293 (540)
T 2olr_A 229 ASMHCSAN--VGEKGDVAVFFG--LSGTGKTTLSTD-P---K--RRLIGDDE-HGW-DDDGV---FNFEGGCYAKTIKLS 293 (540)
T ss_dssp EEECEEEE--ECTTSCEEEEEC--STTSSHHHHHCC-T---T--SEEEESSC-EEE-ETTEE---EESCSEEEEECTTCC
T ss_pred Eeecceee--eCCCCCEEEEEc--cCCCCHHHHhcC-c---C--CcEEecCc-eee-cCCCc---ccccCceEEEeccCC
Confidence 99874 478899888886 999999999986 2 1 27999999 887 47885 399999999999999
Q ss_pred CCCCHHHHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCC
Q psy17657 349 CNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDW 428 (652)
Q Consensus 349 ~~tnP~am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~w 428 (652)
.+..|.++++++.++||.||.+++||.++|++.. .|+|+|++.|++++|++++.+
T Consensus 294 ~e~EP~i~~ai~~~aileNV~~d~~g~~df~d~s-------------------------~t~NtR~~yPi~~i~n~~~~~ 348 (540)
T 2olr_A 294 KEAEPEIYNAIRRDALLENVTVREDGTIDFDDGS-------------------------KTENTRVSYPIYHIDNIVKPV 348 (540)
T ss_dssp TTTSHHHHHTCSTTCEEESCEECTTSCEETTCCS-------------------------SCSCCEEEEEGGGSSSBCCSS
T ss_pred cccChhHHHhcCccceeeeeeEcCCCCeecCCCC-------------------------ccccceEEEEHHHCCCcCCcc
Confidence 9999999999988899999999999988875532 599999999999999999877
Q ss_pred CCCCCceeEEEEecccCC-CCCcceEeeCCCcchhh-hhccchhhhhhcccccCcceecCC-----cccCCCCCCChHHH
Q psy17657 429 QSPQGVPISAIIFGGRRP-EGVPLVYEAFDWQHGVF-VGASMRSEATAAAEHKGKAILNDP-----FAMRPFFGYNFGQY 501 (652)
Q Consensus 429 edP~GVPIsAiiFGGRr~-~tvPLV~ea~~W~HGVf-~gAsm~SE~TAAa~g~~g~v~~DP-----mAMlpF~gyn~gdY 501 (652)
++.|+| ++|||.+||+ .++|+|.+ ++|+|++| ..|.+.|+.+. +| .|+.+.+| || .||+.|+.++|
T Consensus 349 -~~~g~P-~~IifLt~Da~gvlPPVsk-Lt~eqA~y~FlsG~tak~aG-tE--~Gv~ep~~tfs~cFa-~PF~p~~p~~y 421 (540)
T 2olr_A 349 -SKAGHA-TKVIFLTADAFGVLPPVSR-LTADQTQYHFLSGFTAKLAG-TE--RGITEPTPTFSACFG-AAFLSLHPTQY 421 (540)
T ss_dssp -SEESCE-EEEEEEECCTTSCSCSEEE-CCHHHHHHHHHHCEEEEETT-GG--GTCCCEEEEECGGGC-GGGCSSCHHHH
T ss_pred -ccCCCC-CEEEEEecCCcCCCCCcee-CCHHHHHHHHHhcchhhhhc-cc--cCccccCCccccccc-CcccCCCHHHH
Confidence 899999 9999999998 89999999 89999998 78888887554 32 36666666 99 99999999999
Q ss_pred HHHHHccccCCCCCCCcEEEeeeeecCCCCCcccCCCCch-----hH-HHHHHHHhhcCCc--ccee-eCcccc-CcCCC
Q psy17657 502 LQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDN-----IR-VLDWIFQRVNGNK--TVRR-FSPIGY-IPDYH 571 (652)
Q Consensus 502 ~~hWL~~g~~~~~k~PkIF~VNwFrkd~~GkfLWPGfgeN-----~R-VL~WI~~R~~G~~--~~a~-eTPiG~-iP~~~ 571 (652)
.++-.+.-++.+ -+++-|| .+ |-|.|.. .| +|+=| ++|+- +... .--+|+ ||+.
T Consensus 422 a~~l~~~~~~~~---v~vylvN---TG------w~Gggkri~~~~traii~ai---~~g~l~~~~~~~~~~f~~~vP~~- 485 (540)
T 2olr_A 422 AEVLVKRMQAAG---AQAYLVN---TG------WNGTGKRISIKDTRAIIDAI---LNGSLDNAETFTLPMFNLAIPTE- 485 (540)
T ss_dssp HHHHHHHHHHHT---CEEEEEE---CS------BCTTSSBCCHHHHHHHHHHH---HHTHHHHSCEEEETTTTEEEESC-
T ss_pred HHHHHHHHHhcC---CeEEEEe---CC------CcCCCccCCHHHHHHHHHHH---hcCCcCCCCceeCCCcCcccCcc-
Confidence 998666543322 5677777 22 2222322 22 24434 44541 2333 334577 8886
Q ss_pred CCCCccCCCC--CCCCCChhhhHHHhhccChHHHHHHHHHHHHHHhh
Q psy17657 572 HNVINLTDLY--EDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFND 616 (652)
Q Consensus 572 ~~~ldl~gL~--~~~k~~~~~~~~~l~~v~~~~W~~E~~~i~~~~~~ 616 (652)
+.|++ ++ .+...|. |++.|.++++++.+-|.+
T Consensus 486 -----~~gv~~~~l---~p~~~w~-----d~~~y~~~~~~L~~~f~~ 519 (540)
T 2olr_A 486 -----LPGVDTKIL---DPRNTYA-----SPEQWQEKAETLAKLFID 519 (540)
T ss_dssp -----CTTSCGGGG---SGGGGSS-----SHHHHHHHHHHHHHHHHH
T ss_pred -----CCCCChHhc---CHhhhcC-----CHHHHHHHHHHHHHHHHH
Confidence 34553 00 0122232 788999999888766543
No 6
>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A
Probab=100.00 E-value=3.4e-46 Score=408.14 Aligned_cols=459 Identities=17% Similarity=0.204 Sum_probs=349.9
Q ss_pred HHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHh---cC-cccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCC
Q psy17657 45 ITESANLCKPKDIHICDGTEEENKAILKKMVD---TN-TVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDH 120 (652)
Q Consensus 45 V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~---~G-~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~ 120 (652)
-.+...||.|++||+|.++++. ++++++ .| ++-+|. ..|..+ .....+++|...++||+.++..+.
T Consensus 6 ~~~~~g~~~~~~i~~n~~~~~L----~e~a~~~~~~~~~eg~l~-~~Gal~-~~tg~~tgRsp~dk~iv~~~~~~~---- 75 (532)
T 1ytm_A 6 SLAKYGITGATNIVHNPSHEEL----FAAETQASLEGFEKGTVT-EMGAVN-VMTGVYTGRSPKDKFIVKNEASKE---- 75 (532)
T ss_dssp HHHHHTCCCCSEEEESCCHHHH----HHHHTCTTCCGGGCEEEC-TTSSEE-ECCTTCCSBCGGGEEEECSGGGTT----
T ss_pred chHhcCCCCCCeEEECCCHHHH----HHHHHhhccCCcccceec-CCCCEE-EcCCCcccCCCCceEEeCCCCccc----
Confidence 3456789999999999988775 566777 66 445664 356665 466789999999999998776653
Q ss_pred CCCccCccccc----------CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCCcceeeccCchHHHhhhhhcc-
Q psy17657 121 KPGVKSQLGNW----------ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMT- 189 (652)
Q Consensus 121 ~~Gv~~~l~nw----------~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIMt- 189 (652)
.+| ..+++.-++|.+++.+.|+||+|||+|+.+| .++++.....+|||++|+.+.|+.|.
T Consensus 76 --------i~w~~~~~~~~n~~~~~e~f~~l~~~~~~~l~~k~l~v~d~~~G-~d~~~~~~vr~it~~a~~~lf~~nLf~ 146 (532)
T 1ytm_A 76 --------IWWTSDEFKNDNKPVTEEAWAQLKALAGKELSNKPLYVVDLFCG-ANENTRLKIRFVMEVAWQAHFVTNMFI 146 (532)
T ss_dssp --------SCCCCSSSCCSCEEECHHHHHHHHHHHHHHHSSSEEEEEEEEES-SCTTTCEEEEEEESCHHHHHHHHHHSB
T ss_pred --------ccccccccCcccCCCCHHHHHHHHHHHHHHHcCCCEEEEEEEee-CChhhceeEEEEeCHHHHHHHHHHhcc
Confidence 255 4556677778889999999999999999999 78999999999999999999999999
Q ss_pred cccHHHHHHhcCCCC---------eeeeeecccCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccch
Q psy17657 190 RMGKAVLDEIAKNDE---------FVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKC 260 (652)
Q Consensus 190 R~g~~v~~~lg~~~~---------Fv~cvHSvG~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKc 260 (652)
|...+.++.. ..+ |....|+.|. +. +++|+|+++++++++.|+.|+||- ||.
T Consensus 147 rp~~ee~~~f--~pd~~i~~~p~~f~~~~~~~G~-------------~s-~~~v~~n~~~~~~~I~gt~Y~Gem---KK~ 207 (532)
T 1ytm_A 147 RPTEEELKGF--EPDFVVLNASKAKVENFKELGL-------------NS-ETAVVFNLAEKMQIILNTWYGGEM---KKG 207 (532)
T ss_dssp CCCHHHHTTC--CCSEEEEEETTCCCTTTTTTTC-------------SS-SCEEEEETTTTEEEEESCCCTTHH---HHH
T ss_pred CCChHHhccC--CCCEEEEECCccccCCcccCCC-------------CC-ceEEEEECCCCEEEEeCCccCchh---hHh
Confidence 9987655421 223 3333344442 22 479999999999999999999983 766
Q ss_pred hhhhhhhcccc-------ceeEeeeeCCCC-cEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEE
Q psy17657 261 FALRINQVKEP-------NNRILGVTNPEG-KKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLR 332 (652)
Q Consensus 261 fALRiAS~~ar-------HMlIlgvt~P~G-~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~ 332 (652)
.||++.+++. ||.+ .| +++| ++.+|.| +||||||+|+|. | + -.+||||+ +++. +||. +
T Consensus 208 -~ftl~n~~~~~~G~L~~H~sa-nv-~~~g~~~~~ffG--lSGtGKTTLs~d-~---~--r~lIgDDe-~~w~-~~Gv-f 273 (532)
T 1ytm_A 208 -MFSMMNFYLPLQGIAAMHCSA-NT-DLEGKNTAIFFG--LSGTGKTTLSTD-P---K--RLLIGDDE-HGWD-DDGV-F 273 (532)
T ss_dssp -HHHHHHHHTGGGTCEEEEEEE-EE-ETTSCSEEEEEC--CTTSSHHHHHCC-T---T--EEEEESSE-EEEC-SSCE-E
T ss_pred -HHHHHHHHHHHCCcEeecCee-ee-CCCCCeEEEEEe--cCCCCHHHHhhC-c---C--CCEEECCe-eeec-cCCc-e
Confidence 9999998883 9987 66 5678 7777775 999999999986 2 2 27999999 8874 7886 3
Q ss_pred EeCCCCceeeecCCCCCCCCHHHHhhccCCceeeeeeecCCCcccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCC
Q psy17657 333 AINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNS 412 (652)
Q Consensus 333 AINPE~GfFGVapGtn~~tnP~am~~l~kntIFTNVa~t~dG~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNs 412 (652)
|+|.|.|+.+.+.|.+..|.++++|+.++|+.||.+++||.|+|++... |+|+
T Consensus 274 --n~EgGcyak~i~Ls~~~EP~i~~ai~~~ailENV~~d~~g~vd~~d~s~-------------------------t~Nt 326 (532)
T 1ytm_A 274 --NFEGGCYAKVINLSKENEPDIWGAIKRNALLENVTVDANGKVDFADKSV-------------------------TENT 326 (532)
T ss_dssp --ESCSEEEEECTTCCTTTCHHHHHHCSTTCEEESCEECTTCCEETTCCSS-------------------------CSCC
T ss_pred --eccceEEEEeccCCCccChhHHHhcCcCceeeeeEECCCCccccCCCcc-------------------------cccc
Confidence 9999999999999999999999999888999999999999888876432 8999
Q ss_pred cccccCCCCCCCC-CCCCCCCCceeEEEEecccCC-CCCcceEeeCCCcchhh---hhccchhhhhhccccc-CcceecC
Q psy17657 413 RFCVPAAECPAMD-PDWQSPQGVPISAIIFGGRRP-EGVPLVYEAFDWQHGVF---VGASMRSEATAAAEHK-GKAILND 486 (652)
Q Consensus 413 RFt~pa~qcp~id-p~wedP~GVPIsAiiFGGRr~-~tvPLV~ea~~W~HGVf---~gAsm~SE~TAAa~g~-~g~v~~D 486 (652)
|++.|.+++|++. +. ++.|+| ++|||.+||+ .++|+|.+ ++|+|++| .|++ |+ +| |+ .|+.+.+
T Consensus 327 R~~~P~~~i~n~~~~~--~~~g~P-~~IifL~~DafgvlPPvsk-lt~~qa~y~FlsG~t--ak-~a---GtE~Gv~ep~ 396 (532)
T 1ytm_A 327 RVSYPIFHIKNIVKPV--SKAPAA-KRVIFLSADAFGVLPPVSI-LSKEQTKYYFLSGFT--AK-LA---GTERGITEPT 396 (532)
T ss_dssp EEEEEGGGSSSBCCSS--SEESCE-EEEEEEECCTTSCSCSEEE-CCHHHHHHHHHHCEE--EE-CT---TSBTTCCSCE
T ss_pred eEEEEHHHCCCcccCC--CcCCCC-ceEEEEecCCCCCCCCcee-cCHHHHHHHHHcCCc--cc-cc---ccccCccccC
Confidence 9999999999998 54 889999 9999999998 78999999 89999999 7999 55 44 33 5666656
Q ss_pred C-----cccCCCCCCChHHHHHHHHccccCCCCCCCcEEEee--eeecCCCCCcccCCCCchhHHHHHHHHhhcCCccc-
Q psy17657 487 P-----FAMRPFFGYNFGQYLQHWLDLQKRPNVKLPKIFHVN--WFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTV- 558 (652)
Q Consensus 487 P-----mAMlpF~gyn~gdY~~hWL~~g~~~~~k~PkIF~VN--wFrkd~~GkfLWPGfgeN~RVL~WI~~R~~G~~~~- 558 (652)
| || .||+.|+.++|.++-++.-++.+ -+.+-|| |+ + .|+.+ | -+..| +-|..=++|+ ..
T Consensus 397 ~tfs~cF~-~PF~~~~~~~ya~~L~~~i~~~~---~~vylvNTg~~--G-~g~r~-~--~~~Tr--~ii~ai~~G~-l~~ 463 (532)
T 1ytm_A 397 PTFSSCFG-AAFLTLPPTKYAEVLVKRMEASG---AKAYLVNTGWN--G-TGKRI-S--IKDTR--GIIDAILDGS-IDT 463 (532)
T ss_dssp EEECGGGC-GGGCCSCHHHHHHHHHHHHHHHT---CEEEEEECSBC--T-TSSBC-C--HHHHH--HHHHHHHTSG-GGG
T ss_pred Cccccccc-CCccCCCHHHHHHHHHHHHHhcC---CeEEEEeCCcc--c-cCccC-C--HHHHH--HHHHHHhcCC-cCC
Confidence 5 99 99999999999988766543322 5666666 44 1 12222 0 02222 3333334565 22
Q ss_pred ---eeeCcccc-CcCCCCCCCccCCCCCCCCCChhhhHH-HhhccChHHHHHHHHHHHHHHhhhh
Q psy17657 559 ---RRFSPIGY-IPDYHHNVINLTDLYEDDKPNLNVNLK-ELFYIDKDFWEQELNAIEKYFNDQV 618 (652)
Q Consensus 559 ---a~eTPiG~-iP~~~~~~ldl~gL~~~~k~~~~~~~~-~l~~v~~~~W~~E~~~i~~~~~~~~ 618 (652)
....-.|+ ||+. +.|++ .+-+. ...-.+++.|.+.++.+.+.|.+.|
T Consensus 464 ~~~~~~~~fg~~vP~~------~~gv~-------~~~l~p~~~w~d~~~y~~~a~~L~~~F~~nf 515 (532)
T 1ytm_A 464 ANTATIPYFNFTVPTE------LKGVD-------TKILDPRNTYADASEWEVKAKDLAERFQKNF 515 (532)
T ss_dssp SCEEEETTTTEEEESC------CTTSC-------TGGGSGGGGSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCceeCCCCCccCccc------CCCCC-------HHhcCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 23444577 7775 45553 11111 1123488999999999988887544
No 7
>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1
Probab=100.00 E-value=3.9e-46 Score=407.20 Aligned_cols=475 Identities=17% Similarity=0.172 Sum_probs=358.8
Q ss_pred CCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCCcCCCCCCCccCcccccCC
Q psy17657 54 PKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWIS 133 (652)
Q Consensus 54 P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da~p~~~~Gv~~~l~nw~~ 133 (652)
|++||+|.+++|.+ +++++.|+-..|.. .|..+ .....+++|...++||+.++..+ +++ ..--.||..
T Consensus 1 ~~~v~~n~~~~eL~----e~A~~~~eg~~lt~-~Gal~-~~tg~~tgRsp~dk~iv~~~~~~--~~i----~w~~~n~~~ 68 (524)
T 1ii2_A 1 PPTIHRNLLSPELV----QWALKIEKDSRLTA-RGALA-VMSYAKTGRSPLDKRIVDTDDVR--ENV----DWGKVNMKL 68 (524)
T ss_dssp CCEEEESCCHHHHH----HHHHHHCTTCEECT-TSCEE-ECCTTCSSBCGGGEEEECCHHHH--TTS----CBTTTBCEE
T ss_pred CCeeEeCCCHHHHH----HHHHHhCCCcEEcC-CCCEE-EecCcccCCCcCceEEeCCCCCc--ccc----ccCcCcccC
Confidence 78999999887755 66788888767753 66666 56678999999999999776654 221 011127778
Q ss_pred HhhHHHHHHhcCCCccCCCe-eEEEecccCCCCCCCCcceeeccCchHHHhhhhhc-ccccHHHHHHhcCCC-------C
Q psy17657 134 PADYDEAIKTRFPGCMKDRT-MYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIM-TRMGKAVLDEIAKND-------E 204 (652)
Q Consensus 134 p~~~~~~l~~~f~G~M~GRT-MYViPfsmGPigSp~s~~GVqlTDS~YVv~smrIM-tR~g~~v~~~lg~~~-------~ 204 (652)
+++.-++|.+++.+.|+||+ |||+++.+| .++++.....+||+++|+.+.|+.| .|...+.++..|... +
T Consensus 69 ~~e~f~~l~~~~~~~l~~k~~l~v~d~~~G-~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~ 147 (524)
T 1ii2_A 69 SEESFARVRKIAKEFLDTREHLFVVDCFAG-HDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGE 147 (524)
T ss_dssp CHHHHHHHHHHHHHHHHTSSEEEEEEEEEC-SSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETT
T ss_pred CHHHHHHHHHHHHHHHcCCCcEEEEeeeee-cChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCC
Confidence 88888889999999999997 999999999 7899999999999999999999999 699988777765443 4
Q ss_pred eeeeeecccCCCCCCCCCCCCCCCCcceEEEEcCCCCeEEEecCCCccccccccchhhhhhhhcccc-------ceeEee
Q psy17657 205 FVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEP-------NNRILG 277 (652)
Q Consensus 205 Fv~cvHSvG~Pl~~~~~~~~WPcnp~k~~I~h~p~~r~I~S~GSgYGGNaLLGKKcfALRiAS~~ar-------HMlIlg 277 (652)
|....|+.|. +. +++|+++++++++++.|+.|+||- ||. .||++.+++. ||.+.
T Consensus 148 f~~~~~~~G~-------------~s-~~~v~~~~~~~~~~I~Gt~Y~Gem---KK~-~ftl~n~~~~~~g~L~~H~san- 208 (524)
T 1ii2_A 148 CKADPSIPGL-------------TS-TTCVALNFKTREQVILGTEYAGEM---KKG-ILTVMFELMPQMNHLCMHASAN- 208 (524)
T ss_dssp SCCCTTSTTC-------------CS-SCEEEEETTTTEEEEESCCCTHHH---HHH-HHHHHHHHHHHTTCEEESEEEE-
T ss_pred ccCCcccCCc-------------Cc-ccEEEEECCCCeEEEECCcchHHH---HHH-HHHHHHHHHHHCCcEeecceee-
Confidence 5555555553 22 479999999999999999999983 766 9999998873 99864
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHHHh
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQ 357 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~am~ 357 (652)
.+++|++.+|.| +||||||+|+|- | + -.+||||+ +++. +||.. |+|.|.|+.+.+.+.++.|.+++
T Consensus 209 -~g~~g~~~~ffG--lSGtGKTTLs~d-~---~--r~lIgDDe-~~w~-~~Gvf---n~E~G~y~K~idl~~e~eP~I~~ 274 (524)
T 1ii2_A 209 -VGKQGDVTVFFG--LSGTGKTTLSAD-P---H--RNLIGDDE-HVWT-DRGVF---NIEGGCYAKAIGLNPKTEKDIYD 274 (524)
T ss_dssp -ECTTCCEEEEEC--CTTSSHHHHHCC-T---T--SEEEESSC-EEEC-SSCEE---ESCSEEEEECTTCCTTTCHHHHH
T ss_pred -eCCCCCEEEEEc--cCCcchhhhhhc-c---C--CeEEecch-hhcc-CCCcc---ccccceEEEecCCCcccChhHHH
Confidence 367899888886 999999999984 2 2 15899999 7874 78854 99999999999999999999999
Q ss_pred hccCCceeeeeeecCCC-cccccCCCcCCCCCcceeecCCCCCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCcee
Q psy17657 358 TIFHNTMFTNVGTTSDD-GVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPI 436 (652)
Q Consensus 358 ~l~kntIFTNVa~t~dG-~vwWeG~~~~~p~~~~~~~W~G~~w~~~~~~paAHPNsRFt~pa~qcp~idp~wedP~GVPI 436 (652)
+++.++|+.||.+++|| .|+|++.. .|||+|++.|.+++|++.+. ++.|+|
T Consensus 275 ai~~~~ilENV~~d~~g~~vd~~d~s-------------------------~t~NtR~~~P~~~i~n~~~~--~~~g~P- 326 (524)
T 1ii2_A 275 AVRFGAVAENCVLDKRTGEIDFYDES-------------------------ICKNTRVAYPLSHIEGALSK--AIAGHP- 326 (524)
T ss_dssp TCSTTCEEESCCBCTTTCSBCTTCCS-------------------------SCSCCEEEEEGGGSTTCCSS--CEECCE-
T ss_pred hcCcCceEEEEEECCCCCcccCCCCc-------------------------ccCCceEEEEHHHCCCCCCc--ccCCCC-
Confidence 99778999999999986 66775532 59999999999999999865 789999
Q ss_pred EEEEecccCC-CCCcceEeeCCCcchhh---hhccchhhhhhcccc-cC-cceec-CCcccCCCCCCChHHHHHHHHccc
Q psy17657 437 SAIIFGGRRP-EGVPLVYEAFDWQHGVF---VGASMRSEATAAAEH-KG-KAILN-DPFAMRPFFGYNFGQYLQHWLDLQ 509 (652)
Q Consensus 437 sAiiFGGRr~-~tvPLV~ea~~W~HGVf---~gAsm~SE~TAAa~g-~~-g~v~~-DPmAMlpF~gyn~gdY~~hWL~~g 509 (652)
++|||++||+ .++|+|.+ ++|+|++| .|+| |+.|+|..| .. .+..+ .||| .||+.|+.++|.++-++.-
T Consensus 327 ~~Iifl~~Da~gvlPPVsk-Lt~eqa~y~F~sG~T--ak~agtE~G~~~ep~~~fs~~fg-~PF~~~~~~~ya~~L~~~i 402 (524)
T 1ii2_A 327 KNVIFLTNDAFGVMPPVAR-LTSAQAMFWFVMGYT--ANVPGVEAGGTRTARPIFSSCFG-GPFLVRHATFYGEQLAEKM 402 (524)
T ss_dssp EEEEEEECCTTSCSCSEEE-ECHHHHHHHHHHCEE--EECSSSBTTCCSSCEEEECGGGC-GGGCCSCHHHHHHHHHHHH
T ss_pred ceEEEEEcCCcCCCCCcEe-cCHHHHHHHHhcCcc--ccccccccCccccCceeeccccC-CCccCCCHHHHHHHHHHHH
Confidence 9999999998 89999999 79999999 7999 777776656 32 34455 8999 9999999999999876654
Q ss_pred cCCCCCCCcEEEee--eeecC-C-CCCcccCCCCchhHHHHHHHHhhcCCc--cceeeCc-ccc-CcCCCCCCCccCCCC
Q psy17657 510 KRPNVKLPKIFHVN--WFRKD-K-DGKFMWPGFGDNIRVLDWIFQRVNGNK--TVRRFSP-IGY-IPDYHHNVINLTDLY 581 (652)
Q Consensus 510 ~~~~~k~PkIF~VN--wFrkd-~-~GkfLWPGfgeN~RVL~WI~~R~~G~~--~~a~eTP-iG~-iP~~~~~~ldl~gL~ 581 (652)
++.+ -+.+-|| |+-.. . +||.+ | -+.. ++-|-.=.+|+- +.-...| .|+ ||+. +.|++
T Consensus 403 ~~~~---~~vylvNTg~~Gg~yg~~g~r~-~--~~~t--ra~i~ai~~G~l~~~~~~~~~~fg~~vP~~------~~gv~ 468 (524)
T 1ii2_A 403 QKHN---SRVWLLNTGYAGGRADRGAKRM-P--LRVT--RAIIDAIHDGTLDRTEYEEYPGWGLHIPKY------VAKVP 468 (524)
T ss_dssp HHHT---CEEEEEECSEESSCGGGTCEEC-C--HHHH--HHHHHHHHSSSGGGSCEEEETTTTEEEESC------CTTSC
T ss_pred HHhC---CeEEEEeCCccccccCccCccC-C--HHHH--HHHHHHHHcCCccCCceeECCccCccCCcc------CCCCC
Confidence 3322 4666776 44311 0 02222 1 1111 222322235651 2333334 477 7876 46664
Q ss_pred CCCCCChhhhHH-HhhccChHHHHHHHHHHHHHHhhh----hCCCCCHHHH
Q psy17657 582 EDDKPNLNVNLK-ELFYIDKDFWEQELNAIEKYFNDQ----VGSDLPPAIH 627 (652)
Q Consensus 582 ~~~k~~~~~~~~-~l~~v~~~~W~~E~~~i~~~~~~~----~g~~lP~~i~ 627 (652)
.+-+. ...-.+++.|.+.++.+.+.|.+. |-+.+.+++.
T Consensus 469 -------~~~l~p~~~w~d~~~y~~~a~~L~~~F~~nf~~~f~~~~~~~~~ 512 (524)
T 1ii2_A 469 -------EHLLNPRKAWKDVRQFNETSKELVAMFQESFSARFAAKASQEMK 512 (524)
T ss_dssp -------HHHHSHHHHCSCHHHHHHHHHHHHHHHHHHHHHHTGGGCCHHHH
T ss_pred -------hhhcChhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccCCHHHH
Confidence 22221 122348889999999988888643 3334555443
No 8
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=92.68 E-value=0.14 Score=50.76 Aligned_cols=68 Identities=13% Similarity=0.169 Sum_probs=45.9
Q ss_pred hhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCCC
Q psy17657 263 LRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPES 338 (652)
Q Consensus 263 LRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~ 338 (652)
...|-.+.-|...+-+ .|+..- -..|||+|||.||.-.- --|+ ++|.||-..++.+.|++|.+-+|+.
T Consensus 17 ~~~a~~~~lHa~~v~~---~g~~il--I~GpsGsGKStLA~~La-~~g~--~iIsdDs~~v~~~~~~~liGtak~~ 84 (205)
T 2qmh_A 17 SQLAERRSMHGVLVDI---YGLGVL--ITGDSGVGKSETALELV-QRGH--RLIADDRVDVYQQDEQTIVGAAPPI 84 (205)
T ss_dssp ----CCCCEESEEEEE---TTEEEE--EECCCTTTTHHHHHHHH-TTTC--EEEESSEEEEEECSTTCEEEECCSS
T ss_pred HhcCcceeeeEEEEEE---CCEEEE--EECCCCCCHHHHHHHHH-HhCC--eEEecchhheeecCCceEEEECCcc
Confidence 3344444447776654 355444 44899999999987432 1366 9999999999988788888877763
No 9
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.22 E-value=0.12 Score=50.46 Aligned_cols=48 Identities=19% Similarity=0.256 Sum_probs=37.5
Q ss_pred CcEEEEEEEcCCcccchhhcc--cCCCCCCceEEEeecceEEEEeCCCccEEEeCCCC
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM--LMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPES 338 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM--l~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE~ 338 (652)
|+-.-|+ .|||+|||+||. +. .|| ..|+||...++.. +|+|++-.|+.
T Consensus 16 G~gvli~--G~SGaGKStlal~L~~---rG~--~lvaDD~v~i~~~-~~~l~g~~p~~ 65 (181)
T 3tqf_A 16 KMGVLIT--GEANIGKSELSLALID---RGH--QLVCDDVIDLKQE-NNQLIGSCPSV 65 (181)
T ss_dssp TEEEEEE--ESSSSSHHHHHHHHHH---TTC--EEEESSEEEEEES-SSCEEEECCTT
T ss_pred CEEEEEE--cCCCCCHHHHHHHHHH---cCC--eEecCCEEEEEEe-CCEEEEeCchH
Confidence 4444444 799999999885 32 588 8999999999976 55999998874
No 10
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=87.70 E-value=0.56 Score=48.80 Aligned_cols=70 Identities=17% Similarity=0.147 Sum_probs=47.7
Q ss_pred hhhhhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceEEEeecceEEEEeCCCccEEEeCCC
Q psy17657 260 CFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPE 337 (652)
Q Consensus 260 cfALRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGDDIAWmr~~~dGrl~AINPE 337 (652)
++.-++|..+.-|-..+.+ .|+- ++-..|||+|||.||...= --|+ ..|+||...++...+++|.+-.|+
T Consensus 124 ~l~~~~~~~~~~H~~~v~~---~g~~--vl~~G~sG~GKSt~a~~l~-~~g~--~lv~dD~~~i~~~~~~~l~g~~~~ 193 (314)
T 1ko7_A 124 FLEHELARTTSLHGVLVDV---YGVG--VLITGDSGIGKSETALELI-KRGH--RLVADDNVEIREISKDELIGRAPK 193 (314)
T ss_dssp HHHHHTCEEEEEESEEEEE---TTEE--EEEEESTTSSHHHHHHHHH-HTTC--EEEESSEEEEEESSSSCEEEECCG
T ss_pred HHHHhhccceeeeEEEEEE---CCEE--EEEEeCCCCCHHHHHHHHH-hcCC--ceecCCeEEEEEcCCCeEEEcCch
Confidence 3344444444448877666 4644 4444899999998874210 1376 789999999998777789887765
No 11
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=87.33 E-value=0.52 Score=49.01 Aligned_cols=93 Identities=17% Similarity=0.091 Sum_probs=60.4
Q ss_pred EcCCCCeEEEecCCCcccccccc--chhhhhhhhccccceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCceE
Q psy17657 236 HKPDTMEIASYGSGYGGNSLLGK--KCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKV 313 (652)
Q Consensus 236 h~p~~r~I~S~GSgYGGNaLLGK--KcfALRiAS~~arHMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwkv 313 (652)
..-++..|.=|.|-+.-..++++ .++..++|..+.-|.-.+-+ .|+-. .-..|||.|||.||.-. -..||
T Consensus 101 e~A~e~~ipLl~T~~~t~~~~~~L~~~l~~~la~~~~~H~~~v~~---~g~gv--li~G~sG~GKStlal~l-~~~G~-- 172 (312)
T 1knx_A 101 QVNQTYQVPILKTDFFSTELSFTVETYINEQFATVAQIHGVLLEV---FGVGV--LLTGRSGIGKSECALDL-INKNH-- 172 (312)
T ss_dssp HHGGGTCCCEEEESSCGGGGTTTHHHHHHHHTCCCEEEEEEEEEE---TTEEE--EEEESSSSSHHHHHHHH-HTTTC--
T ss_pred HHHHHcCCEEEEeCccHHHHHHHHHHHHHHHhhhcceeEEEEEEE---CCEEE--EEEcCCCCCHHHHHHHH-HHcCC--
Confidence 33445566666676666666554 24444554444448766655 35443 34479999999887531 12688
Q ss_pred EEeecceEEEEeCCCccEEEeCCC
Q psy17657 314 ECVGDDIAWMKFDEEGNLRAINPE 337 (652)
Q Consensus 314 e~VGDDIAWmr~~~dGrl~AINPE 337 (652)
..|+||...++.. +|++++-.|+
T Consensus 173 ~lv~DD~v~i~~~-~~~l~g~~p~ 195 (312)
T 1knx_A 173 LFVGDDAIEIYRL-GNRLFGRAQE 195 (312)
T ss_dssp EEEEEEEEEEEEE-TTEEEEEECT
T ss_pred EEEeCCEEEEEEe-CCeEEEeCch
Confidence 8999999999975 5559988887
No 12
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=83.00 E-value=0.61 Score=43.70 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=15.6
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++|+ .++-..|||||||+|+=
T Consensus 20 ~~g~--~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 20 PGRQ--LVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CSCE--EEEEECCTTSCTHHHHH
T ss_pred CCCe--EEEEECCCCCCHHHHHH
Confidence 4454 45556899999999974
No 13
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=81.68 E-value=0.38 Score=43.67 Aligned_cols=37 Identities=24% Similarity=0.357 Sum_probs=24.8
Q ss_pred CCcEEEEEEEcCCcccchhhcccCCCCCCc-eEEEeecce
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMPTLYDW-KVECVGDDI 320 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p~~pGw-kve~VGDDI 320 (652)
+|+...+. .|||||||+|+-+.-..++. .|.+=|||+
T Consensus 8 ~g~~i~l~--G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 8 GGNILLLS--GHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TTEEEEEE--ECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 47776666 79999999998654333443 355556665
No 14
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=81.50 E-value=0.5 Score=43.91 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=25.3
Q ss_pred CCCCcEEEEEEEcCCcccchhhcccCC-C--CCCceE-EEeecce
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAMLMP-T--LYDWKV-ECVGDDI 320 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl~p-~--~pGwkv-e~VGDDI 320 (652)
.+.|+...+. .|||||||+||-+.- . .+|+.+ .+-||++
T Consensus 22 ~~~g~~i~l~--G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 22 DQKGCVIWVT--GLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp TSCCEEEEEE--CSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCCeEEEEE--CCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 4567776666 899999999975432 1 357653 3445554
No 15
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=78.49 E-value=0.83 Score=42.42 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=17.7
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.+.|+...+. .|||||||+||-+.
T Consensus 25 ~~~~g~~i~l~--G~~GsGKSTl~~~L 49 (200)
T 4eun_A 25 TGEPTRHVVVM--GVSGSGKTTIAHGV 49 (200)
T ss_dssp ---CCCEEEEE--CCTTSCHHHHHHHH
T ss_pred cCCCCcEEEEE--CCCCCCHHHHHHHH
Confidence 45567777776 89999999997643
No 16
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=77.49 E-value=0.94 Score=41.56 Aligned_cols=21 Identities=10% Similarity=0.135 Sum_probs=15.7
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+...++ .|||||||+|+-+
T Consensus 4 ~g~~i~i~--GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLL--GAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEE--CCTTSSHHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 36655555 8999999999754
No 17
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=77.17 E-value=1 Score=41.14 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=15.0
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+..-+. .|||||||+|+-
T Consensus 6 ~g~ii~l~--Gp~GsGKSTl~~ 25 (205)
T 3tr0_A 6 KANLFIIS--APSGAGKTSLVR 25 (205)
T ss_dssp CCCEEEEE--CCTTSCHHHHHH
T ss_pred CCcEEEEE--CcCCCCHHHHHH
Confidence 46654444 899999999864
No 18
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=77.16 E-value=0.89 Score=42.07 Aligned_cols=23 Identities=35% Similarity=0.310 Sum_probs=15.8
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+++|+. ++-..|||||||+|+-+
T Consensus 3 ~~~~~~--i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 3 APKPFV--IGIAGGTASGKTTLAQA 25 (211)
T ss_dssp --CCEE--EEEEESTTSSHHHHHHH
T ss_pred CCCcEE--EEEECCCCCCHHHHHHH
Confidence 455654 55558999999999854
No 19
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=77.03 E-value=0.93 Score=41.41 Aligned_cols=24 Identities=29% Similarity=0.250 Sum_probs=17.9
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=++|+..-+. .|||||||+|+-+
T Consensus 5 ~i~~gei~~l~--G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 5 TIPELSLVVLI--GSSGSGKSTFAKK 28 (171)
T ss_dssp EEESSEEEEEE--CCTTSCHHHHHHH
T ss_pred cCCCCEEEEEE--CCCCCCHHHHHHH
Confidence 34557665555 8999999999765
No 20
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=75.60 E-value=1.2 Score=40.03 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=16.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.+|+...++ .|||||||++|-+
T Consensus 6 ~~g~~i~l~--G~~GsGKSTl~~~ 27 (175)
T 1knq_A 6 HDHHIYVLM--GVSGSGKSAVASE 27 (175)
T ss_dssp TTSEEEEEE--CSTTSCHHHHHHH
T ss_pred CCCcEEEEE--cCCCCCHHHHHHH
Confidence 447665555 8999999999754
No 21
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=74.92 E-value=1 Score=41.98 Aligned_cols=21 Identities=29% Similarity=0.248 Sum_probs=16.2
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+...++ .|||||||+|+=.
T Consensus 11 ~~~~i~l~--G~sGsGKsTl~~~ 31 (204)
T 2qor_A 11 RIPPLVVC--GPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCEEEE--CCTTSCHHHHHHH
T ss_pred cCCEEEEE--CCCCCCHHHHHHH
Confidence 56666665 8999999998753
No 22
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=73.53 E-value=1.4 Score=42.72 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
|.|+...+. .|||||||+|.
T Consensus 14 ~~G~ii~l~--GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVS--APSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEE--CCTTSCHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHH
Confidence 578888777 79999999984
No 23
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=73.36 E-value=1.4 Score=40.89 Aligned_cols=21 Identities=24% Similarity=0.246 Sum_probs=16.5
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+...+. .|||||||++|-.
T Consensus 24 ~~~~i~l~--G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 24 AMVRIFLT--GYMGAGKTTLGKA 44 (199)
T ss_dssp CCCEEEEE--CCTTSCHHHHHHH
T ss_pred CCCEEEEE--cCCCCCHHHHHHH
Confidence 46666665 7999999999864
No 24
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=72.91 E-value=1.6 Score=41.66 Aligned_cols=20 Identities=20% Similarity=0.046 Sum_probs=15.9
Q ss_pred EEEEEEcCCcccchhhcccC
Q psy17657 286 MFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~ 305 (652)
.+|+-..|||||||+|+-+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46777799999999987543
No 25
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=72.88 E-value=1.4 Score=41.10 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=15.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++|+..-+. .|||||||+|+-
T Consensus 18 ~~Gei~~l~--GpnGsGKSTLl~ 38 (207)
T 1znw_A 18 AVGRVVVLS--GPSAVGKSTVVR 38 (207)
T ss_dssp -CCCEEEEE--CSTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 457665554 899999999864
No 26
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=72.78 E-value=1.6 Score=39.86 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=16.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-++ .|||||||+|+-+
T Consensus 4 ~~g~~i~l~--G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLS--GPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEE--CSTTSCHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 356654444 8999999999754
No 27
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=71.60 E-value=1.6 Score=45.22 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=17.4
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.++...|+-+.|||||||+||-
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 3455677788999999999974
No 28
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=71.42 E-value=0.62 Score=40.57 Aligned_cols=31 Identities=23% Similarity=0.215 Sum_probs=22.0
Q ss_pred EEEEEcCCcccchhhcccCCCCCCceEEEeec
Q psy17657 287 FVAAAFPSACGKTNLAMLMPTLYDWKVECVGD 318 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGD 318 (652)
.|+-..|+|||||++|-.. ..-|+.+-.+||
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~ 33 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVMSD 33 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEHhH
Confidence 4555689999999999765 556776554443
No 29
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=71.29 E-value=1.1 Score=41.28 Aligned_cols=21 Identities=29% Similarity=0.032 Sum_probs=15.8
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+.+-+. .|||||||+|+.+
T Consensus 24 ~G~~~~l~--G~nGsGKSTll~~ 44 (231)
T 4a74_A 24 TQAITEVF--GEFGSGKTQLAHT 44 (231)
T ss_dssp SSEEEEEE--ESTTSSHHHHHHH
T ss_pred CCcEEEEE--CCCCCCHHHHHHH
Confidence 46655444 8999999999864
No 30
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=71.23 E-value=1.4 Score=41.94 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=16.6
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=+.|+..-|. .|||||||+|+-+
T Consensus 19 ~i~~G~~~~lv--GpsGsGKSTLl~~ 42 (218)
T 1z6g_A 19 SMNNIYPLVIC--GPSGVGKGTLIKK 42 (218)
T ss_dssp ---CCCCEEEE--CSTTSSHHHHHHH
T ss_pred ecCCCCEEEEE--CCCCCCHHHHHHH
Confidence 33568776665 8999999998643
No 31
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=70.43 E-value=1.8 Score=40.60 Aligned_cols=21 Identities=24% Similarity=0.339 Sum_probs=16.3
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+...+. .|||||||+|+=
T Consensus 6 ~~g~~i~l~--GpsGsGKsTl~~ 26 (208)
T 3tau_A 6 ERGLLIVLS--GPSGVGKGTVRE 26 (208)
T ss_dssp CCCCEEEEE--CCTTSCHHHHHH
T ss_pred CCCcEEEEE--CcCCCCHHHHHH
Confidence 457765555 899999999874
No 32
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=70.06 E-value=1.4 Score=41.76 Aligned_cols=22 Identities=36% Similarity=0.632 Sum_probs=12.4
Q ss_pred CCCCcEEEEEEEcCCcccchhhcc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
-+.|+..-++ .|||||||+|+=
T Consensus 24 v~~G~ii~l~--Gp~GsGKSTl~~ 45 (231)
T 3lnc_A 24 KSVGVILVLS--SPSGCGKTTVAN 45 (231)
T ss_dssp EECCCEEEEE--CSCC----CHHH
T ss_pred cCCCCEEEEE--CCCCCCHHHHHH
Confidence 3457665555 899999999863
No 33
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=69.80 E-value=1.9 Score=43.58 Aligned_cols=22 Identities=18% Similarity=0.259 Sum_probs=18.0
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++...|+-+.|||||||+||-+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 4556788889999999999853
No 34
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=69.21 E-value=1.5 Score=41.05 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=14.4
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+. .|||||||+|+=+
T Consensus 3 ~g~~i~lv--GpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLS--GPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEE--CCTTSSHHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 35555555 8999999998643
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=68.87 E-value=1.4 Score=39.94 Aligned_cols=22 Identities=36% Similarity=0.440 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++|+..++. .|+|||||.||..
T Consensus 36 ~~g~~~~l~--G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 36 EEGKGLTFV--GSPGVGKTHLAVA 57 (180)
T ss_dssp GGCCEEEEC--CSSSSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 347777777 6999999999864
No 36
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=68.64 E-value=2 Score=39.38 Aligned_cols=22 Identities=41% Similarity=0.365 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+..-++ .|||||||+||+.
T Consensus 18 ~~G~~~~i~--G~~GsGKTtl~~~ 39 (220)
T 2cvh_A 18 APGVLTQVY--GPYASGKTTLALQ 39 (220)
T ss_dssp CTTSEEEEE--CSTTSSHHHHHHH
T ss_pred cCCEEEEEE--CCCCCCHHHHHHH
Confidence 457766555 8999999999885
No 37
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=68.40 E-value=1.7 Score=38.61 Aligned_cols=16 Identities=19% Similarity=0.324 Sum_probs=12.6
Q ss_pred EEcCCcccchhhcccC
Q psy17657 290 AAFPSACGKTNLAMLM 305 (652)
Q Consensus 290 aAFPSaCGKTnlAMl~ 305 (652)
--.|||||||++|=+.
T Consensus 9 l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 9 LVGPMGAGKSTIGRQL 24 (173)
T ss_dssp EECCTTSCHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 3479999999998653
No 38
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=68.08 E-value=0.78 Score=41.83 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=20.8
Q ss_pred EEEEcCCcccchhhcccC-CCCCCceEEEeecce
Q psy17657 288 VAAAFPSACGKTNLAMLM-PTLYDWKVECVGDDI 320 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~-p~~pGwkve~VGDDI 320 (652)
++-..|||||||+|+-+. .++ +..+.+-||++
T Consensus 5 i~l~G~~GaGKSTl~~~L~~~~-~g~~~i~~d~~ 37 (189)
T 2bdt_A 5 YIITGPAGVGKSTTCKRLAAQL-DNSAYIEGDII 37 (189)
T ss_dssp EEEECSTTSSHHHHHHHHHHHS-SSEEEEEHHHH
T ss_pred EEEECCCCCcHHHHHHHHhccc-CCeEEEcccch
Confidence 334489999999987543 223 33566667776
No 39
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=67.92 E-value=2 Score=39.04 Aligned_cols=31 Identities=13% Similarity=0.275 Sum_probs=20.9
Q ss_pred CCCCcEEEEEEEcCCcccchhhcccCCCCCCc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAMLMPTLYDW 311 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGw 311 (652)
++.++...|+-..|+|||||++|-+.--. |+
T Consensus 3 ~~~~~~~~I~i~G~~GsGKST~~~~La~~-g~ 33 (203)
T 1uf9_A 3 HEAKHPIIIGITGNIGSGKSTVAALLRSW-GY 33 (203)
T ss_dssp ---CCCEEEEEEECTTSCHHHHHHHHHHT-TC
T ss_pred CcccCceEEEEECCCCCCHHHHHHHHHHC-CC
Confidence 34555666777789999999998764434 65
No 40
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=67.80 E-value=1.9 Score=40.32 Aligned_cols=22 Identities=32% Similarity=0.510 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+..-+. .|||||||+|+.+
T Consensus 28 ~~G~~~~l~--GpnGsGKSTLl~~ 49 (251)
T 2ehv_A 28 PEGTTVLLT--GGTGTGKTTFAAQ 49 (251)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHHH
Confidence 357777665 8999999999863
No 41
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=67.79 E-value=2.3 Score=38.95 Aligned_cols=26 Identities=23% Similarity=0.533 Sum_probs=18.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++.++|....++ .|+|||||++|-+.
T Consensus 5 ~~~~~~~~I~l~--G~~GsGKSTv~~~L 30 (184)
T 1y63_A 5 MEQPKGINILIT--GTPGTGKTSMAEMI 30 (184)
T ss_dssp -CCCSSCEEEEE--CSTTSSHHHHHHHH
T ss_pred cCCCCCCEEEEE--CCCCCCHHHHHHHH
Confidence 345667666666 79999999998643
No 42
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=66.18 E-value=2.1 Score=44.02 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.1
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+=|.|+..-|. .|||||||+|+++.
T Consensus 122 ~i~~Ge~vaIv--GpsGsGKSTLl~lL 146 (305)
T 2v9p_A 122 GIPKKNCLAFI--GPPNTGKSMLCNSL 146 (305)
T ss_dssp TCTTCSEEEEE--CSSSSSHHHHHHHH
T ss_pred EecCCCEEEEE--CCCCCcHHHHHHHH
Confidence 34678877666 89999999999863
No 43
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=65.54 E-value=2.5 Score=37.76 Aligned_cols=19 Identities=16% Similarity=0.259 Sum_probs=14.4
Q ss_pred cEEEEEEEcCCcccchhhccc
Q psy17657 284 KKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl 304 (652)
+..+++ .|||||||++|-.
T Consensus 4 ~~i~l~--G~~GsGKST~a~~ 22 (178)
T 1qhx_A 4 RMIILN--GGSSAGKSGIVRC 22 (178)
T ss_dssp CEEEEE--CCTTSSHHHHHHH
T ss_pred eEEEEE--CCCCCCHHHHHHH
Confidence 444555 7899999999864
No 44
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=65.52 E-value=2.1 Score=39.90 Aligned_cols=22 Identities=18% Similarity=0.046 Sum_probs=17.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-++ .|||||||+|++.
T Consensus 22 ~~G~~~~i~--G~~GsGKTtl~~~ 43 (243)
T 1n0w_A 22 ETGSITEMF--GEFRTGKTQICHT 43 (243)
T ss_dssp ETTSEEEEE--CCTTSSHHHHHHH
T ss_pred cCCeEEEEE--CCCCCcHHHHHHH
Confidence 357777776 6999999999874
No 45
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=65.12 E-value=1.7 Score=43.11 Aligned_cols=24 Identities=50% Similarity=0.755 Sum_probs=18.5
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+++-|.| +.--.|+|||||.||-.
T Consensus 40 ~l~~~~G----vlL~Gp~GtGKTtLaka 63 (274)
T 2x8a_A 40 GLVTPAG----VLLAGPPGCGKTLLAKA 63 (274)
T ss_dssp TCCCCSE----EEEESSTTSCHHHHHHH
T ss_pred CCCCCCe----EEEECCCCCcHHHHHHH
Confidence 5666777 55558999999999764
No 46
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=64.87 E-value=2.2 Score=39.06 Aligned_cols=21 Identities=19% Similarity=0.200 Sum_probs=16.6
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-++ .|||||||+|+..
T Consensus 22 ~G~~~~i~--G~~GsGKTtl~~~ 42 (235)
T 2w0m_A 22 QGFFIALT--GEPGTGKTIFSLH 42 (235)
T ss_dssp TTCEEEEE--CSTTSSHHHHHHH
T ss_pred CCCEEEEE--cCCCCCHHHHHHH
Confidence 57666554 8999999999874
No 47
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=64.38 E-value=1.3 Score=45.13 Aligned_cols=37 Identities=22% Similarity=0.152 Sum_probs=24.3
Q ss_pred CCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
+|+. ++-..|||||||+|+-+.-- ..|-+|.++|-|+
T Consensus 101 ~g~v--i~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRV--VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSE--EEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeE--EEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 3554 44447999999998653211 1366888888776
No 48
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=64.32 E-value=2.9 Score=37.85 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=17.7
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..++. .|+|||||.|+-+
T Consensus 35 ~g~~~~l~--G~~G~GKTtL~~~ 55 (149)
T 2kjq_A 35 HGQFIYVW--GEEGAGKSHLLQA 55 (149)
T ss_dssp CCSEEEEE--SSSTTTTCHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 57788887 8999999999765
No 49
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=64.24 E-value=2.9 Score=40.71 Aligned_cols=22 Identities=27% Similarity=0.243 Sum_probs=16.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|...-|. .|||||||+++-+
T Consensus 25 ~~g~~I~I~--G~~GsGKSTl~k~ 46 (252)
T 4e22_A 25 AIAPVITVD--GPSGAGKGTLCKA 46 (252)
T ss_dssp TTSCEEEEE--CCTTSSHHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHHH
Confidence 456654444 8999999999865
No 50
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=63.11 E-value=2.9 Score=38.62 Aligned_cols=18 Identities=28% Similarity=0.294 Sum_probs=13.7
Q ss_pred EEEEcCCcccchhhcccC
Q psy17657 288 VAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~ 305 (652)
|+-..|||||||++|-+.
T Consensus 24 i~i~G~~GsGKSTl~~~L 41 (207)
T 2qt1_A 24 IGISGVTNSGKTTLAKNL 41 (207)
T ss_dssp EEEEESTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 444489999999998653
No 51
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=62.85 E-value=3.6 Score=40.05 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=18.0
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlA 302 (652)
++=+.|+..-+. .|||||||+|.
T Consensus 26 l~i~~Ge~~~ii--G~nGsGKSTLl 48 (235)
T 3tif_A 26 LNIKEGEFVSIM--GPSGSGKSTML 48 (235)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHH
Confidence 344578877776 79999999985
No 52
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=61.63 E-value=3 Score=36.59 Aligned_cols=17 Identities=24% Similarity=0.342 Sum_probs=12.9
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..|||||||++|=.
T Consensus 4 i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 4 IILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEECSSSSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34457899999999754
No 53
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=61.54 E-value=2.7 Score=38.53 Aligned_cols=14 Identities=36% Similarity=0.468 Sum_probs=11.2
Q ss_pred EEEcCCcccchhhc
Q psy17657 289 AAAFPSACGKTNLA 302 (652)
Q Consensus 289 aaAFPSaCGKTnlA 302 (652)
+-..|||||||+|+
T Consensus 5 ~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 5 VISGPSGTGKSTLL 18 (186)
T ss_dssp EEESSSSSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 33479999999985
No 54
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=60.32 E-value=2.8 Score=38.98 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|+.+-++ .|+|||||.||+
T Consensus 21 ~~G~~~~i~--G~~GsGKTtl~~ 41 (247)
T 2dr3_A 21 PERNVVLLS--GGPGTGKTIFSQ 41 (247)
T ss_dssp ETTCEEEEE--ECTTSSHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHH
Confidence 347776665 789999999987
No 55
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=59.91 E-value=3.6 Score=39.47 Aligned_cols=17 Identities=18% Similarity=0.237 Sum_probs=13.0
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..|||||||+|+=+
T Consensus 28 igI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 28 IGVSGGTASGKSTVCEK 44 (245)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44457899999999854
No 56
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=59.69 E-value=2.1 Score=43.50 Aligned_cols=41 Identities=17% Similarity=0.054 Sum_probs=26.3
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccCC-CC--CCceEEEeecce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLMP-TL--YDWKVECVGDDI 320 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~p-~~--pGwkve~VGDDI 320 (652)
++-++|+..-+. .|||||||+|+-..- -+ .|-+|.+.|-|+
T Consensus 95 ~~~~~g~vi~lv--G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~ 138 (302)
T 3b9q_A 95 LGFRKPAVIMIV--GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 138 (302)
T ss_dssp CCSSSCEEEEEE--CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred cccCCCcEEEEE--cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecc
Confidence 334457666666 699999999864221 11 366788777765
No 57
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=59.51 E-value=4.5 Score=39.43 Aligned_cols=25 Identities=32% Similarity=0.466 Sum_probs=19.0
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|.-+
T Consensus 26 l~i~~Ge~~~i~--G~nGsGKSTLl~~ 50 (237)
T 2cbz_A 26 FSIPEGALVAVV--GQVGCGKSSLLSA 50 (237)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHHH
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHH
Confidence 344578877777 8999999998643
No 58
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=59.36 E-value=3.8 Score=37.79 Aligned_cols=20 Identities=20% Similarity=0.273 Sum_probs=16.1
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+.|+...+. .|+|||||+|.
T Consensus 31 ~~Ge~v~L~--G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLN--GDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEE--CSTTSSHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHH
Confidence 568776666 79999999985
No 59
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=58.77 E-value=3.9 Score=36.90 Aligned_cols=38 Identities=26% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCcEEEEEEEcCCcccchhhcccCCC-C--CCceEEEe-ecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLMPT-L--YDWKVECV-GDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~p~-~--pGwkve~V-GDDI 320 (652)
+.|+...++ .++|||||++|-+.-. + .|+.+-.+ ||++
T Consensus 3 ~~g~~i~l~--G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLT--GLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEE--CCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEE--CCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 346555554 8999999998754321 2 47665433 4443
No 60
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=58.14 E-value=3.8 Score=41.86 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=15.0
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
..++-+.|||||||+|+=+
T Consensus 91 ~ivgI~G~sGsGKSTL~~~ 109 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARV 109 (312)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred EEEEEECCCCchHHHHHHH
Confidence 4566669999999999843
No 61
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=57.99 E-value=4.7 Score=42.51 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=25.4
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc----cCCCCCCceEEEeecce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM----LMPTLYDWKVECVGDDI 320 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM----l~p~~pGwkve~VGDDI 320 (652)
++=++|+..-+. .|||||||+|.- +.++..| +|.+=|.||
T Consensus 25 l~i~~Ge~~~ll--GpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~i 68 (359)
T 3fvq_A 25 LSLDPGEILFII--GASGCGKTTLLRCLAGFEQPDSG-EISLSGKTI 68 (359)
T ss_dssp EEECTTCEEEEE--ESTTSSHHHHHHHHHTSSCCSEE-EEEETTEEE
T ss_pred EEEcCCCEEEEE--CCCCchHHHHHHHHhcCCCCCCc-EEEECCEEC
Confidence 344568766555 899999999854 3344445 355555555
No 62
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=57.49 E-value=3.4 Score=40.41 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=18.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+ .|+|||||+||+.
T Consensus 28 ~~G~i~~i~--G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 28 VAGTVGALV--SPGGAGKSMLALQ 49 (279)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHH
T ss_pred cCCCEEEEE--cCCCCCHHHHHHH
Confidence 468877776 7999999999874
No 63
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=57.01 E-value=4.2 Score=37.84 Aligned_cols=35 Identities=29% Similarity=0.165 Sum_probs=22.7
Q ss_pred EEEEEEcCCcccchhhcccCC-CC--CCceEEEeecce
Q psy17657 286 MFVAAAFPSACGKTNLAMLMP-TL--YDWKVECVGDDI 320 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~p-~~--pGwkve~VGDDI 320 (652)
..++-..|||||||+|+-+.- .+ .|.+|..++-|.
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 345555799999999875332 12 366777777554
No 64
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=56.81 E-value=3.8 Score=40.18 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+.+-|+ .|||||||+|++.
T Consensus 33 ~~G~~~~i~--G~~G~GKTTl~~~ 54 (296)
T 1cr0_A 33 RGGEVIMVT--SGSGMGKSTFVRQ 54 (296)
T ss_dssp CTTCEEEEE--ESTTSSHHHHHHH
T ss_pred CCCeEEEEE--eCCCCCHHHHHHH
Confidence 357766555 8999999999874
No 65
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=56.65 E-value=4.4 Score=35.79 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.5
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|.-..|+|||||++|-.
T Consensus 4 ~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHH
Confidence 455668999999999864
No 66
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=56.55 E-value=4.4 Score=39.11 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.2
Q ss_pred CCCCcEEEEEEEcCCcccchhhcc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
=++|+..-+. .|||||||+|.-
T Consensus 27 i~~Ge~~~ii--G~nGsGKSTLl~ 48 (224)
T 2pcj_A 27 VKKGEFVSII--GASGSGKSTLLY 48 (224)
T ss_dssp EETTCEEEEE--ECTTSCHHHHHH
T ss_pred EcCCCEEEEE--CCCCCCHHHHHH
Confidence 3468877666 799999999854
No 67
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=56.29 E-value=3.1 Score=39.71 Aligned_cols=24 Identities=38% Similarity=0.624 Sum_probs=16.9
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+++-|.| ..+ -.|+|||||.||-.
T Consensus 45 ~~~~~~g--~ll--~G~~G~GKTtl~~~ 68 (254)
T 1ixz_A 45 GARIPKG--VLL--VGPPGVGKTHLARA 68 (254)
T ss_dssp TCCCCSE--EEE--ECCTTSSHHHHHHH
T ss_pred CCCCCCe--EEE--ECCCCCCHHHHHHH
Confidence 3445666 334 48999999999764
No 68
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=56.23 E-value=4.1 Score=36.35 Aligned_cols=18 Identities=28% Similarity=0.215 Sum_probs=9.9
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|.-..++|||||++|-.
T Consensus 7 ~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp EEEEECCC----CHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344458999999999865
No 69
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=55.87 E-value=5.5 Score=39.44 Aligned_cols=24 Identities=17% Similarity=0.236 Sum_probs=18.3
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=+.|+..-+. .|||||||+|.=
T Consensus 27 l~i~~Ge~~~li--G~nGsGKSTLlk 50 (262)
T 1b0u_A 27 LQARAGDVISII--GSSGSGKSTFLR 50 (262)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 334568877676 899999999853
No 70
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=55.77 E-value=4.8 Score=39.56 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=18.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|.-+
T Consensus 30 l~i~~Ge~~~i~--G~nGsGKSTLl~~ 54 (247)
T 2ff7_A 30 LSIKQGEVIGIV--GRSGSGKSTLTKL 54 (247)
T ss_dssp EEEETTCEEEEE--CSTTSSHHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 333568877776 8999999998643
No 71
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=55.69 E-value=4 Score=37.98 Aligned_cols=21 Identities=33% Similarity=0.559 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|..+-|+ .++|||||.|||
T Consensus 28 ~~G~l~~i~--G~pG~GKT~l~l 48 (251)
T 2zts_A 28 PEGTTVLLT--GGTGTGKTTFAA 48 (251)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCeEEEEE--eCCCCCHHHHHH
Confidence 457777776 689999999987
No 72
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=55.60 E-value=5.1 Score=38.70 Aligned_cols=20 Identities=15% Similarity=0.258 Sum_probs=14.8
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+...+ ..|||||||+|+-
T Consensus 18 ~g~~ivl--~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVL--IGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEE--ECCTTSSHHHHHH
T ss_pred CCCEEEE--ECcCCCCHHHHHH
Confidence 4655444 5899999999854
No 73
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=55.45 E-value=5.5 Score=38.81 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=18.6
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|.-+
T Consensus 23 l~i~~Ge~~~i~--G~nGsGKSTLl~~ 47 (243)
T 1mv5_A 23 FEAQPNSIIAFA--GPSGGGKSTIFSL 47 (243)
T ss_dssp EEECTTEEEEEE--CCTTSSHHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 334568876666 8999999998643
No 74
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=55.32 E-value=4.5 Score=36.03 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=13.7
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|+|||||++|-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 355567899999999853
No 75
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=55.07 E-value=5.8 Score=41.64 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=17.9
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=++|+..-+. .|||||||+|.-
T Consensus 24 l~i~~Ge~~~ll--GpnGsGKSTLLr 47 (359)
T 2yyz_A 24 FEVKDGEFVALL--GPSGCGKTTTLL 47 (359)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--cCCCchHHHHHH
Confidence 344568776666 899999999853
No 76
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=55.01 E-value=3.2 Score=42.86 Aligned_cols=38 Identities=13% Similarity=-0.041 Sum_probs=25.1
Q ss_pred CCCcEEEEEEEcCCcccchhhccc-CCC--CCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML-MPT--LYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl-~p~--~pGwkve~VGDDI 320 (652)
+.|+. ++-..|||||||+|+-. ..- ..|.+|..+|-|+
T Consensus 127 ~~g~v--i~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~ 167 (328)
T 3e70_C 127 EKPYV--IMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDT 167 (328)
T ss_dssp CSSEE--EEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeE--EEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecc
Confidence 44554 44448999999998432 211 1466899999886
No 77
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=54.85 E-value=5.2 Score=40.01 Aligned_cols=19 Identities=21% Similarity=0.088 Sum_probs=14.4
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
.-|.-+.|||||||++|-.
T Consensus 34 ~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp EEEEEECCTTSCTHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3444458999999999863
No 78
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=54.77 E-value=5.9 Score=39.17 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=18.8
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|.-+
T Consensus 41 l~i~~Ge~~~i~--G~nGsGKSTLl~~ 65 (260)
T 2ghi_A 41 FFIPSGTTCALV--GHTGSGKSTIAKL 65 (260)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHHH
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHH
Confidence 334578877666 8999999999643
No 79
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=54.76 E-value=4.9 Score=40.40 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=14.1
Q ss_pred EEEEEEcCCcccchhhcc
Q psy17657 286 MFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAM 303 (652)
.-|+-..|||||||+|+-
T Consensus 81 ~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 445666899999999874
No 80
>3mcb_B Transcription factor BTF3; beta-barrel like structure, NAC, heterodimer, chaperone; 1.90A {Homo sapiens}
Probab=54.74 E-value=3 Score=33.84 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=26.6
Q ss_pred cccCeEEeccCCCCccccccceEEEecCCC
Q psy17657 85 KHVNCWLASTNPADVARVEDKTFICTVNRS 114 (652)
Q Consensus 85 k~~n~~l~rsdP~DvARve~rTfI~t~~~~ 114 (652)
|..|..+||.+|+=+|-+.++||++|-..+
T Consensus 14 k~dg~vihF~nPkVqaS~~aNTfvv~G~~e 43 (58)
T 3mcb_B 14 TNQGTVIHFNNPKVQASLAANTFTITGHAE 43 (58)
T ss_dssp ETTSEEEEEESCEEEEETTTTEEEEESCEE
T ss_pred ecCCEEEEecCcceEEeeccceEEEecCCe
Confidence 558899999999999999999999976654
No 81
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=54.60 E-value=5.9 Score=41.62 Aligned_cols=24 Identities=29% Similarity=0.389 Sum_probs=17.8
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=++|+..-+. .|||||||+|.=
T Consensus 24 l~i~~Ge~~~ll--GpnGsGKSTLLr 47 (362)
T 2it1_A 24 LKIKDGEFMALL--GPSGSGKSTLLY 47 (362)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHH
T ss_pred EEECCCCEEEEE--CCCCchHHHHHH
Confidence 344568776665 899999999863
No 82
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.54 E-value=3.6 Score=44.24 Aligned_cols=26 Identities=38% Similarity=0.663 Sum_probs=20.9
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+|+..|.|-..| .|+|||||.||-..
T Consensus 177 ~gi~~prGvLL~----GPPGTGKTllAkAi 202 (405)
T 4b4t_J 177 LGIAQPKGVILY----GPPGTGKTLLARAV 202 (405)
T ss_dssp HTCCCCCCEEEE----SCSSSSHHHHHHHH
T ss_pred CCCCCCCceEEe----CCCCCCHHHHHHHH
Confidence 478889886655 89999999998643
No 83
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=54.47 E-value=5.7 Score=36.39 Aligned_cols=21 Identities=19% Similarity=0.281 Sum_probs=16.0
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.++..++. .|+|||||.||..
T Consensus 51 ~~~~~ll~--G~~G~GKT~la~~ 71 (242)
T 3bos_A 51 GVQAIYLW--GPVKSGRTHLIHA 71 (242)
T ss_dssp SCSEEEEE--CSTTSSHHHHHHH
T ss_pred CCCeEEEE--CCCCCCHHHHHHH
Confidence 45555665 7999999999864
No 84
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=54.34 E-value=4.2 Score=36.90 Aligned_cols=35 Identities=23% Similarity=0.471 Sum_probs=24.4
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeec
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGD 318 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGD 318 (652)
|-|+.|++++| |+|||++|+.... ..|.||-.|-=
T Consensus 1 M~vi~v~s~kg-----------G~GKTt~a~~la~~la~~g~~vlliD~ 38 (206)
T 4dzz_A 1 MKVISFLNPKG-----------GSGKTTAVINIATALSRSGYNIAVVDT 38 (206)
T ss_dssp CEEEEECCSST-----------TSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEEeCCC-----------CccHHHHHHHHHHHHHHCCCeEEEEEC
Confidence 67788888776 8999999874322 25777666543
No 85
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=54.25 E-value=4.8 Score=36.13 Aligned_cols=19 Identities=26% Similarity=0.282 Sum_probs=14.7
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
..|.-..|+|||||++|-.
T Consensus 6 ~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3455568999999999754
No 86
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=53.94 E-value=6.1 Score=41.97 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=24.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc----cCCCCCCceEEEeecce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM----LMPTLYDWKVECVGDDI 320 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM----l~p~~pGwkve~VGDDI 320 (652)
++=++|+..=+. .|||||||+|.- +.++..| +|.+=|.|+
T Consensus 24 l~i~~Ge~~~ll--GpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~~ 67 (381)
T 3rlf_A 24 LDIHEGEFVVFV--GPSGCGKSTLLRMIAGLETITSG-DLFIGEKRM 67 (381)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHHHHTSSCCSEE-EEEETTEEC
T ss_pred EEECCCCEEEEE--cCCCchHHHHHHHHHcCCCCCCe-EEEECCEEC
Confidence 344568766555 899999999854 3344445 344444444
No 87
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=53.94 E-value=4.6 Score=35.96 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=18.8
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCce
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWK 312 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGwk 312 (652)
||-+++|+++ +|||||++|-+.-..-||.
T Consensus 6 ~~~~i~l~G~------------~GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 6 HMQHLVLIGF------------MGSGKSSLAQELGLALKLE 34 (168)
T ss_dssp --CEEEEESC------------TTSSHHHHHHHHHHHHTCC
T ss_pred ccceEEEECC------------CCCCHHHHHHHHHHHhCCC
Confidence 8988888875 6799999987543222553
No 88
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=53.75 E-value=5.6 Score=38.47 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=18.0
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+=+.|+..-+. .|||||||+|.-
T Consensus 30 ~i~~Ge~~~i~--G~nGsGKSTLl~ 52 (229)
T 2pze_A 30 KIERGQLLAVA--GSTGAGKTSLLM 52 (229)
T ss_dssp EEETTCEEEEE--CCTTSSHHHHHH
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHH
Confidence 33568887777 899999999864
No 89
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=53.48 E-value=6.1 Score=41.94 Aligned_cols=25 Identities=16% Similarity=0.195 Sum_probs=18.5
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=++|+..-+. .|||||||+|.-+
T Consensus 42 l~i~~Ge~~~ll--GpsGsGKSTLLr~ 66 (390)
T 3gd7_A 42 FSISPGQRVGLL--GRTGSGKSTLLSA 66 (390)
T ss_dssp EEECTTCEEEEE--ESTTSSHHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCChHHHHHHH
Confidence 334568776666 7999999998643
No 90
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=53.19 E-value=4.5 Score=37.52 Aligned_cols=18 Identities=33% Similarity=0.438 Sum_probs=13.8
Q ss_pred EEEEcCCcccchhhcccC
Q psy17657 288 VAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~ 305 (652)
|+-..|||||||++|=+.
T Consensus 8 i~i~G~~GsGKSTl~~~L 25 (227)
T 1cke_A 8 ITIDGPSGAGKGTLCKAM 25 (227)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 444479999999998654
No 91
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=53.01 E-value=3.3 Score=42.53 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=28.0
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
++...|+..-|+ -|+|||||+|+...-. ..|.||-+++-|+
T Consensus 100 ~~~~~~~vI~iv--G~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 100 FKENRLNIFMLV--GVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp CCTTSCEEEEEE--SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccCCCCeEEEEE--CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 344556666666 4799999987653221 1588999988875
No 92
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=52.97 E-value=6.5 Score=41.46 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=17.8
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=++|+..-+. .|||||||+|.-
T Consensus 32 l~i~~Ge~~~ll--GpnGsGKSTLLr 55 (372)
T 1v43_A 32 LTIKDGEFLVLL--GPSGCGKTTTLR 55 (372)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHH
T ss_pred EEECCCCEEEEE--CCCCChHHHHHH
Confidence 334568766666 899999999863
No 93
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=52.75 E-value=6.7 Score=39.11 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=19.0
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|.-+
T Consensus 40 l~i~~Ge~~~i~--G~nGsGKSTLlk~ 64 (271)
T 2ixe_A 40 FTLYPGKVTALV--GPNGSGKSTVAAL 64 (271)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHHH
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHH
Confidence 344578877666 8999999998653
No 94
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=52.74 E-value=4.2 Score=40.88 Aligned_cols=17 Identities=12% Similarity=0.258 Sum_probs=10.9
Q ss_pred EEEEEcCCcccchhhcc
Q psy17657 287 FVAAAFPSACGKTNLAM 303 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAM 303 (652)
-|+-+.|||||||++|=
T Consensus 7 iIgItG~sGSGKSTva~ 23 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKH 23 (290)
T ss_dssp EEEEESCC---CCTHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 36666799999999984
No 95
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=52.57 E-value=6.7 Score=39.12 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=18.5
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=++|+..-+. .|||||||+|.=
T Consensus 45 l~i~~Gei~~li--G~NGsGKSTLlk 68 (263)
T 2olj_A 45 VHIREGEVVVVI--GPSGSGKSTFLR 68 (263)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--cCCCCcHHHHHH
Confidence 334578887777 899999999964
No 96
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=52.33 E-value=5.2 Score=35.67 Aligned_cols=18 Identities=22% Similarity=0.185 Sum_probs=14.1
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|||||||++|-.
T Consensus 5 ~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455568999999999764
No 97
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=52.29 E-value=5.9 Score=41.60 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=17.3
Q ss_pred eCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+=++|+..-+. .|||||||+|.-
T Consensus 37 ~i~~Ge~~~ll--GpnGsGKSTLLr 59 (355)
T 1z47_A 37 QIREGEMVGLL--GPSGSGKTTILR 59 (355)
T ss_dssp EEETTCEEEEE--CSTTSSHHHHHH
T ss_pred EECCCCEEEEE--CCCCCcHHHHHH
Confidence 33568776666 899999999864
No 98
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=52.24 E-value=4 Score=37.38 Aligned_cols=18 Identities=22% Similarity=0.266 Sum_probs=13.8
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|+|||||++|-+
T Consensus 12 ~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 344458999999999864
No 99
>3lkx_A Transcription factor BTF3; beta-barrel, chaperone; 2.50A {Homo sapiens}
Probab=52.19 E-value=3.3 Score=34.37 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.5
Q ss_pred cccCeEEeccCCCCccccccceEEEecCCC
Q psy17657 85 KHVNCWLASTNPADVARVEDKTFICTVNRS 114 (652)
Q Consensus 85 k~~n~~l~rsdP~DvARve~rTfI~t~~~~ 114 (652)
|..|..+||.+|+=+|-+.++||++|-..+
T Consensus 14 k~dg~vihF~nPkVqaS~~aNT~vv~G~~e 43 (66)
T 3lkx_A 14 TNQGTVIHFNNPKVQASLAANTFTITGHAE 43 (66)
T ss_dssp ETTSEEEEEESCEEEEECC-CEEEEESCEE
T ss_pred ecCCEEEEecCcceEEeeccCeeEecCCCE
Confidence 558899999999999999999999976654
No 100
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=52.11 E-value=5.5 Score=41.58 Aligned_cols=24 Identities=21% Similarity=0.303 Sum_probs=17.8
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=++|+..-+. .|||||||+|.-
T Consensus 21 l~i~~Ge~~~ll--GpnGsGKSTLLr 44 (348)
T 3d31_A 21 LKVESGEYFVIL--GPTGAGKTLFLE 44 (348)
T ss_dssp EEECTTCEEEEE--CCCTHHHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCccHHHHHH
Confidence 334568766665 899999999864
No 101
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.97 E-value=3.8 Score=44.28 Aligned_cols=25 Identities=40% Similarity=0.666 Sum_probs=20.1
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|+.-|.|-..| .|+|||||.||-.
T Consensus 210 ~g~~~prGvLLy----GPPGTGKTllAkA 234 (434)
T 4b4t_M 210 MGIRAPKGALMY----GPPGTGKTLLARA 234 (434)
T ss_dssp HCCCCCCEEEEE----SCTTSSHHHHHHH
T ss_pred CCCCCCCeeEEE----CcCCCCHHHHHHH
Confidence 477788886555 8999999999864
No 102
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=51.96 E-value=6.9 Score=38.83 Aligned_cols=24 Identities=21% Similarity=0.278 Sum_probs=18.3
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+=++|+..-+. .|||||||+|.-+
T Consensus 42 ~i~~Ge~~~l~--G~NGsGKSTLlk~ 65 (267)
T 2zu0_C 42 DVHPGEVHAIM--GPNGSGKSTLSAT 65 (267)
T ss_dssp EECTTCEEEEE--CCTTSSHHHHHHH
T ss_pred EEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 33568877666 8999999998643
No 103
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=51.82 E-value=3.8 Score=44.17 Aligned_cols=25 Identities=32% Similarity=0.596 Sum_probs=19.9
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|+.-|.|-..| .|+|||||.||-.
T Consensus 201 ~g~~~prGiLL~----GPPGtGKT~lakA 225 (428)
T 4b4t_K 201 IGIDPPRGVLLY----GPPGTGKTMLVKA 225 (428)
T ss_dssp HCCCCCCEEEEE----SCTTTTHHHHHHH
T ss_pred CCCCCCceEEEE----CCCCCCHHHHHHH
Confidence 478888885544 8999999999864
No 104
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=51.78 E-value=5.9 Score=39.82 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=18.1
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=++|+..-+. .|||||||+|.=
T Consensus 29 l~i~~Ge~~~ii--GpnGsGKSTLl~ 52 (275)
T 3gfo_A 29 MNIKRGEVTAIL--GGNGVGKSTLFQ 52 (275)
T ss_dssp EEEETTSEEEEE--CCTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHH
Confidence 333568877666 899999999864
No 105
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=51.74 E-value=8.9 Score=26.39 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHhhcccc
Q psy17657 624 PAIHAEISGLRQRLKSYHPLW 644 (652)
Q Consensus 624 ~~i~~~l~~l~~rl~~~~~~~ 644 (652)
.|+.+||++|.+||.+++.|.
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999998887764
No 106
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.65 E-value=6.3 Score=38.35 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=17.8
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
=+.|+..-+. .|||||||+|.-+
T Consensus 29 i~~Ge~~~l~--G~nGsGKSTLl~~ 51 (240)
T 1ji0_A 29 VPRGQIVTLI--GANGAGKTTTLSA 51 (240)
T ss_dssp EETTCEEEEE--CSTTSSHHHHHHH
T ss_pred EcCCCEEEEE--CCCCCCHHHHHHH
Confidence 3568877666 8999999999643
No 107
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=51.62 E-value=5.5 Score=38.36 Aligned_cols=19 Identities=16% Similarity=0.321 Sum_probs=13.9
Q ss_pred EEEEEcCCcccchhhcccC
Q psy17657 287 FVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~ 305 (652)
-|+-..|||||||++|-+.
T Consensus 24 iI~I~G~~GSGKST~a~~L 42 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKI 42 (252)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3445567899999998643
No 108
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=51.49 E-value=5.4 Score=35.94 Aligned_cols=18 Identities=17% Similarity=0.117 Sum_probs=14.0
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|+|||||++|-+
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 355567899999999765
No 109
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=51.46 E-value=5.7 Score=40.72 Aligned_cols=25 Identities=28% Similarity=0.393 Sum_probs=19.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-|. .|||||||+|+-+
T Consensus 75 l~i~~Ge~vaiv--G~sGsGKSTLl~l 99 (306)
T 3nh6_A 75 FTVMPGQTLALV--GPSGAGKSTILRL 99 (306)
T ss_dssp EEECTTCEEEEE--SSSCHHHHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCchHHHHHHH
Confidence 344679887777 8999999999754
No 110
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=51.32 E-value=5.4 Score=41.66 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=25.0
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDI 320 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDI 320 (652)
++=++|+..-+. .|||||||+|.=+ .++..| +|.+=|.|+
T Consensus 26 l~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i 69 (353)
T 1oxx_K 26 INIENGERFGIL--GPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLV 69 (353)
T ss_dssp EEECTTCEEEEE--CSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEE
T ss_pred EEECCCCEEEEE--CCCCCcHHHHHHHHhCCCCCCce-EEEECCEEC
Confidence 344568776666 8999999998632 233345 344445444
No 111
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=51.13 E-value=6.3 Score=38.63 Aligned_cols=23 Identities=26% Similarity=0.467 Sum_probs=18.0
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
=+.|+..-+. .|||||||+|.-+
T Consensus 26 i~~Ge~~~l~--G~nGsGKSTLlk~ 48 (250)
T 2d2e_A 26 VPKGEVHALM--GPNGAGKSTLGKI 48 (250)
T ss_dssp EETTCEEEEE--CSTTSSHHHHHHH
T ss_pred EcCCCEEEEE--CCCCCCHHHHHHH
Confidence 3468877676 8999999999654
No 112
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=50.98 E-value=3.6 Score=40.98 Aligned_cols=43 Identities=12% Similarity=-0.019 Sum_probs=25.6
Q ss_pred chhhhhhhhcccc-ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 259 KCFALRINQVKEP-NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 259 KcfALRiAS~~ar-HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+.|.=+++..+.+ .+...++..|.| ..+. .|+|||||.||-..
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~~--lLl~--GppGtGKT~la~ai 56 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPLI--LGIW--GGKGQGKSFQCELV 56 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCSE--EEEE--ECTTSCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCeE--EEEE--CCCCCCHHHHHHHH
Confidence 3444445555555 444445555544 3343 79999999998743
No 113
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=50.95 E-value=5.8 Score=38.52 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=18.2
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.+|..-..-+.-..|+|||||.||-.
T Consensus 40 ~~~~~~~~~~~ll~G~~GtGKt~la~~ 66 (311)
T 4fcw_A 40 LKDPNRPIGSFLFLGPTGVGKTELAKT 66 (311)
T ss_dssp CSCTTSCSEEEEEESCSSSSHHHHHHH
T ss_pred CCCCCCCceEEEEECCCCcCHHHHHHH
Confidence 345543333455568999999999864
No 114
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=50.72 E-value=6.4 Score=41.42 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=24.3
Q ss_pred eCCCCcEEEEEEEcCCcccchhhccc----CCCCCCceEEEeecce
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLAML----MPTLYDWKVECVGDDI 320 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDI 320 (652)
+=++|+..-+. .|||||||+|.-+ .++..| +|.+=|.|+
T Consensus 25 ~i~~Ge~~~ll--GpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~ 67 (372)
T 1g29_1 25 EVKDGEFMILL--GPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLV 67 (372)
T ss_dssp EEETTCEEEEE--CSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEE
T ss_pred EEcCCCEEEEE--CCCCcHHHHHHHHHHcCCCCCcc-EEEECCEEC
Confidence 33468766555 8999999998642 333445 355545454
No 115
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.59 E-value=4.1 Score=44.05 Aligned_cols=25 Identities=36% Similarity=0.615 Sum_probs=20.1
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|+.-|.|-..| .|+|||||.||-.
T Consensus 210 ~g~~~prGvLL~----GPPGtGKTllAkA 234 (437)
T 4b4t_L 210 VGIKPPKGVLLY----GPPGTGKTLLAKA 234 (437)
T ss_dssp HCCCCCCEEEEE----SCTTSSHHHHHHH
T ss_pred CCCCCCCeEEEE----CCCCCcHHHHHHH
Confidence 477888885555 8999999999864
No 116
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=50.38 E-value=5.4 Score=37.62 Aligned_cols=25 Identities=44% Similarity=0.717 Sum_probs=16.5
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|+..|.| .++. .|+|||||.||-.
T Consensus 34 ~g~~~~~~--vll~--G~~GtGKT~la~~ 58 (262)
T 2qz4_A 34 LGAKVPKG--ALLL--GPPGCGKTLLAKA 58 (262)
T ss_dssp --CCCCCE--EEEE--SCTTSSHHHHHHH
T ss_pred cCCCCCce--EEEE--CCCCCCHHHHHHH
Confidence 45555544 4444 8999999999864
No 117
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=50.16 E-value=6.5 Score=39.14 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.-
T Consensus 35 ~~Ge~~~li--G~nGsGKSTLl~ 55 (266)
T 4g1u_C 35 ASGEMVAII--GPNGAGKSTLLR 55 (266)
T ss_dssp ETTCEEEEE--CCTTSCHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHH
Confidence 468776666 899999999864
No 118
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=49.80 E-value=5.5 Score=36.60 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=12.8
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..|||||||++|-.
T Consensus 21 I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 21 IVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33347899999999853
No 119
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=49.66 E-value=5.9 Score=41.53 Aligned_cols=19 Identities=37% Similarity=0.515 Sum_probs=15.7
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
+-|+-+.|||||||.||.-
T Consensus 4 ~~i~i~GptgsGKt~la~~ 22 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVM 22 (322)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCcCCHHHHHHH
Confidence 3466779999999999874
No 120
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=49.50 E-value=6.6 Score=38.95 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=24.3
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC----CCC-CCceEEEeecceEE
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM----PTL-YDWKVECVGDDIAW 322 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~----p~~-pGwkve~VGDDIAW 322 (652)
+.|+.. +-..|||||||+|.-+. ++. .| +|.+.||+|.+
T Consensus 23 ~~g~~v--~i~Gp~GsGKSTll~~l~g~~~~~~~G-~I~~~g~~i~~ 66 (261)
T 2eyu_A 23 RKMGLI--LVTGPTGSGKSTTIASMIDYINQTKSY-HIITIEDPIEY 66 (261)
T ss_dssp CSSEEE--EEECSTTCSHHHHHHHHHHHHHHHCCC-EEEEEESSCCS
T ss_pred CCCCEE--EEECCCCccHHHHHHHHHHhCCCCCCC-EEEEcCCccee
Confidence 346544 44489999999985322 222 34 67777877643
No 121
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=49.40 E-value=5.6 Score=37.97 Aligned_cols=25 Identities=40% Similarity=0.550 Sum_probs=15.8
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++...|.| ..+ -.|+|||||.||-.
T Consensus 40 ~~~~~~~~--vll--~G~~GtGKT~la~~ 64 (257)
T 1lv7_A 40 LGGKIPKG--VLM--VGPPGTGKTLLAKA 64 (257)
T ss_dssp ---CCCCE--EEE--ECCTTSCHHHHHHH
T ss_pred cCCCCCCe--EEE--ECcCCCCHHHHHHH
Confidence 44555555 334 48999999999854
No 122
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=49.35 E-value=8.1 Score=38.24 Aligned_cols=24 Identities=29% Similarity=0.375 Sum_probs=18.5
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=+.|+..-+. .|||||||+|.=
T Consensus 28 l~i~~Ge~~~li--G~nGsGKSTLl~ 51 (266)
T 2yz2_A 28 LVINEGECLLVA--GNTGSGKSTLLQ 51 (266)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHH
Confidence 344568877777 899999999864
No 123
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=49.33 E-value=6.9 Score=37.56 Aligned_cols=22 Identities=36% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 20 ~~Ge~~~li--G~nGsGKSTLl~~ 41 (208)
T 3b85_A 20 DTNTIVFGL--GPAGSGKTYLAMA 41 (208)
T ss_dssp HHCSEEEEE--CCTTSSTTHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 357776554 8999999998653
No 124
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=49.33 E-value=3.5 Score=37.83 Aligned_cols=18 Identities=22% Similarity=0.211 Sum_probs=14.2
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|||||||++|-+
T Consensus 2 ~I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 456667999999999854
No 125
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=49.20 E-value=3.9 Score=41.85 Aligned_cols=38 Identities=16% Similarity=-0.023 Sum_probs=24.8
Q ss_pred CCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
..|+..-++ -|+|||||+|+...-. ..|-||-.++-|+
T Consensus 102 ~~~~vi~iv--G~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 102 EPPFVIMVV--GVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp SSCEEEEEE--CCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CCCeEEEEE--cCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 345555555 5899999987653211 1478888888764
No 126
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=48.52 E-value=4.1 Score=42.81 Aligned_cols=41 Identities=17% Similarity=0.042 Sum_probs=26.0
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC-CCC--CCceEEEeecce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM-PTL--YDWKVECVGDDI 320 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~-p~~--pGwkve~VGDDI 320 (652)
++-+.|+..-+. .|||||||+|+-.. --+ .|-+|..+|-|+
T Consensus 152 l~~~~g~vi~lv--G~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~ 195 (359)
T 2og2_A 152 LGFRKPAVIMIV--GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDT 195 (359)
T ss_dssp CCSSSSEEEEEE--CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCC
T ss_pred eecCCCeEEEEE--cCCCChHHHHHHHHHhhccccCCEEEEecccc
Confidence 334457666555 69999999986422 111 366777777665
No 127
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=48.48 E-value=6 Score=35.53 Aligned_cols=20 Identities=15% Similarity=0.283 Sum_probs=14.4
Q ss_pred cEEEEEEEcCCcccchhhcccC
Q psy17657 284 KKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+...++ .|||||||++|-..
T Consensus 6 ~~i~l~--G~~GsGKst~a~~L 25 (185)
T 3trf_A 6 TNIYLI--GLMGAGKTSVGSQL 25 (185)
T ss_dssp CEEEEE--CSTTSSHHHHHHHH
T ss_pred CEEEEE--CCCCCCHHHHHHHH
Confidence 344444 78999999998743
No 128
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=48.48 E-value=7.8 Score=35.45 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=15.5
Q ss_pred cEEEEEEEcCCcccchhhc-cc
Q psy17657 284 KKMFVAAAFPSACGKTNLA-ML 304 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlA-Ml 304 (652)
+...|+-..|+|||||++| +|
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 3445556678999999998 44
No 129
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=48.38 E-value=5 Score=41.42 Aligned_cols=22 Identities=27% Similarity=0.024 Sum_probs=18.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+ .|||||||+|++.
T Consensus 129 ~~G~i~~I~--G~~GsGKTTL~~~ 150 (349)
T 1pzn_A 129 ETQAITEVF--GEFGSGKTQLAHT 150 (349)
T ss_dssp ESSEEEEEE--ESTTSSHHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHHH
Confidence 458887777 6999999999875
No 130
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=48.18 E-value=5.1 Score=39.03 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=16.7
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+++-|.| +.--.|+|||||.||-.
T Consensus 69 ~~~~~~g----vll~Gp~GtGKTtl~~~ 92 (278)
T 1iy2_A 69 GARIPKG----VLLVGPPGVGKTHLARA 92 (278)
T ss_dssp TCCCCCE----EEEECCTTSSHHHHHHH
T ss_pred CCCCCCe----EEEECCCcChHHHHHHH
Confidence 3444666 33448999999999754
No 131
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.01 E-value=6.6 Score=36.58 Aligned_cols=16 Identities=25% Similarity=0.160 Sum_probs=12.3
Q ss_pred EEEcCCcccchhhccc
Q psy17657 289 AAAFPSACGKTNLAML 304 (652)
Q Consensus 289 aaAFPSaCGKTnlAMl 304 (652)
+--.|||||||+|+-+
T Consensus 4 ~l~G~nGsGKTTLl~~ 19 (178)
T 1ye8_A 4 IITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEECCTTSSHHHHHHH
T ss_pred EEECCCCCCHHHHHHH
Confidence 3447899999999653
No 132
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=47.97 E-value=5.7 Score=42.18 Aligned_cols=20 Identities=20% Similarity=0.087 Sum_probs=16.9
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+.+-|+ .|||||||+|++
T Consensus 177 ~Gei~~I~--G~sGsGKTTLl~ 196 (400)
T 3lda_A 177 TGSITELF--GEFRTGKSQLCH 196 (400)
T ss_dssp TTSEEEEE--ESTTSSHHHHHH
T ss_pred CCcEEEEE--cCCCCChHHHHH
Confidence 47777776 899999999987
No 133
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=47.83 E-value=6.8 Score=35.26 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=13.6
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
+|+-..|+|||||++|=+
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455567899999998754
No 134
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=47.80 E-value=6.2 Score=36.28 Aligned_cols=29 Identities=21% Similarity=0.164 Sum_probs=17.2
Q ss_pred EEcCCcccchhhcccCCCCCCceEEEeecce
Q psy17657 290 AAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320 (652)
Q Consensus 290 aAFPSaCGKTnlAMl~p~~pGwkve~VGDDI 320 (652)
-..|+|||||+++=+.-. -|+.+ +=+|++
T Consensus 7 l~G~~GsGKST~~~~La~-lg~~~-id~d~~ 35 (206)
T 1jjv_A 7 LTGGIGSGKTTIANLFTD-LGVPL-VDADVV 35 (206)
T ss_dssp EECSTTSCHHHHHHHHHT-TTCCE-EEHHHH
T ss_pred EECCCCCCHHHHHHHHHH-CCCcc-cchHHH
Confidence 345788999998865432 35532 234554
No 135
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=47.70 E-value=6.1 Score=38.58 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=13.5
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
++-..|||||||+||-.
T Consensus 4 i~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 4 HLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCcCHHHHHHH
Confidence 34457999999999874
No 136
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=47.61 E-value=8.5 Score=38.96 Aligned_cols=24 Identities=33% Similarity=0.385 Sum_probs=18.9
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=+.|+..-+. .|||||||+|.-
T Consensus 59 l~i~~Ge~~~i~--G~NGsGKSTLlk 82 (290)
T 2bbs_A 59 FKIERGQLLAVA--GSTGAGKTSLLM 82 (290)
T ss_dssp EEECTTCEEEEE--ESTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHH
Confidence 344578888777 799999999864
No 137
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=47.15 E-value=9.5 Score=37.79 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=18.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=++|+..-+. .|||||||+|.-+
T Consensus 36 l~i~~Gei~~l~--G~NGsGKSTLlk~ 60 (256)
T 1vpl_A 36 FEIEEGEIFGLI--GPNGAGKTTTLRI 60 (256)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHHH
T ss_pred EEEcCCcEEEEE--CCCCCCHHHHHHH
Confidence 333568877666 8999999998643
No 138
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=47.15 E-value=7.7 Score=38.93 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 45 ~~Ge~~~li--G~NGsGKSTLlk~ 66 (279)
T 2ihy_A 45 AKGDKWILY--GLNGAGKTTLLNI 66 (279)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCcHHHHHHH
Confidence 468877666 8999999999643
No 139
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=46.74 E-value=3.5 Score=42.44 Aligned_cols=12 Identities=25% Similarity=0.321 Sum_probs=10.2
Q ss_pred CCcccchhhccc
Q psy17657 293 PSACGKTNLAML 304 (652)
Q Consensus 293 PSaCGKTnlAMl 304 (652)
|||+|||.|+..
T Consensus 43 ~~G~GKs~~~~~ 54 (392)
T 4ag6_A 43 KPGAGKSFTAKM 54 (392)
T ss_dssp CTTSSHHHHHHH
T ss_pred CCCCCHHHHHHH
Confidence 999999998653
No 140
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=46.63 E-value=7.5 Score=38.23 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.-
T Consensus 31 ~~Ge~~~li--G~nGsGKSTLlk 51 (257)
T 1g6h_A 31 NKGDVTLII--GPNGSGKSTLIN 51 (257)
T ss_dssp ETTCEEEEE--CSTTSSHHHHHH
T ss_pred eCCCEEEEE--CCCCCCHHHHHH
Confidence 468776666 899999999964
No 141
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=46.03 E-value=6.5 Score=35.98 Aligned_cols=14 Identities=29% Similarity=0.536 Sum_probs=11.1
Q ss_pred EcCCcccchhhccc
Q psy17657 291 AFPSACGKTNLAML 304 (652)
Q Consensus 291 AFPSaCGKTnlAMl 304 (652)
..|+|||||++|=+
T Consensus 7 ~G~~GsGKSTl~~~ 20 (204)
T 2if2_A 7 TGNIGCGKSTVAQM 20 (204)
T ss_dssp EECTTSSHHHHHHH
T ss_pred ECCCCcCHHHHHHH
Confidence 35789999999854
No 142
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=46.03 E-value=8.3 Score=35.93 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=16.0
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+...+. .|+|||||++|-+
T Consensus 23 ~~~~~i~~~--G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 23 QRGLTIWLT--GLSASGKSTLAVE 44 (211)
T ss_dssp SSCEEEEEE--CSTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 346555554 7899999999864
No 143
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=45.77 E-value=9 Score=34.69 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=22.4
Q ss_pred CcEEEEEEEcCCcccchhhcccCC-C--CCCceEEEe-ecce
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMP-T--LYDWKVECV-GDDI 320 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p-~--~pGwkve~V-GDDI 320 (652)
|....+ ..++|||||++|-..- . ..|++|.++ ||++
T Consensus 13 ~~~i~l--~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 13 GIVVWL--TGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CEEEEE--ECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CcEEEE--EcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 444444 4889999999986432 1 146666655 4444
No 144
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=45.57 E-value=7.9 Score=36.00 Aligned_cols=20 Identities=25% Similarity=0.205 Sum_probs=15.8
Q ss_pred EEEEEEcCCcccchhhcccC
Q psy17657 286 MFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~ 305 (652)
..|+-..|+|||||++|-+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L 24 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAF 24 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 45667789999999988653
No 145
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=45.57 E-value=7.8 Score=34.53 Aligned_cols=19 Identities=16% Similarity=0.050 Sum_probs=14.7
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
..|+-..|+|||||++|-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3556668999999999853
No 146
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=45.14 E-value=8.3 Score=36.53 Aligned_cols=14 Identities=14% Similarity=0.242 Sum_probs=10.7
Q ss_pred cCCcccchhhcccC
Q psy17657 292 FPSACGKTNLAMLM 305 (652)
Q Consensus 292 FPSaCGKTnlAMl~ 305 (652)
.++|||||++|=+.
T Consensus 19 G~~GSGKSTva~~L 32 (192)
T 2grj_A 19 GKIGTGKSTVCEIL 32 (192)
T ss_dssp CSTTSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 35889999988643
No 147
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=45.13 E-value=7.7 Score=37.51 Aligned_cols=22 Identities=27% Similarity=0.302 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++|+..-+. .|||||||+|.-+
T Consensus 33 ~~Ge~~~ii--G~NGsGKSTLlk~ 54 (214)
T 1sgw_A 33 EKGNVVNFH--GPNGIGKTTLLKT 54 (214)
T ss_dssp ETTCCEEEE--CCTTSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 468777666 8999999998643
No 148
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=45.08 E-value=7.8 Score=39.67 Aligned_cols=21 Identities=19% Similarity=-0.089 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|+.+-|+ .|+|||||.||+
T Consensus 120 ~~G~i~~I~--G~~GsGKTtla~ 140 (343)
T 1v5w_A 120 ESMAITEAF--GEFRTGKTQLSH 140 (343)
T ss_dssp CSSEEEEEE--CCTTCTHHHHHH
T ss_pred CCCeEEEEE--CCCCCCHHHHHH
Confidence 457777766 899999999987
No 149
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=45.03 E-value=7.3 Score=34.95 Aligned_cols=18 Identities=22% Similarity=0.158 Sum_probs=13.7
Q ss_pred EEEEcCCcccchhhcccC
Q psy17657 288 VAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~ 305 (652)
|+-..|+|||||++|-..
T Consensus 7 i~i~G~~GsGKsTla~~L 24 (175)
T 1via_A 7 IVFIGFMGSGKSTLARAL 24 (175)
T ss_dssp EEEECCTTSCHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHH
Confidence 344589999999998653
No 150
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=44.89 E-value=7 Score=41.00 Aligned_cols=19 Identities=32% Similarity=0.536 Sum_probs=15.6
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
+-|+-+.|||||||+||..
T Consensus 8 ~lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHH
Confidence 3567779999999999864
No 151
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=44.86 E-value=5 Score=37.51 Aligned_cols=16 Identities=38% Similarity=0.287 Sum_probs=12.2
Q ss_pred EEcCCcccchhhcccC
Q psy17657 290 AAFPSACGKTNLAMLM 305 (652)
Q Consensus 290 aAFPSaCGKTnlAMl~ 305 (652)
-..|||||||+|+-+.
T Consensus 7 IvG~SGsGKSTL~~~L 22 (171)
T 2f1r_A 7 IVGTSDSGKTTLITRM 22 (171)
T ss_dssp EEESCHHHHHHHHHHH
T ss_pred EECCCCCCHHHHHHHH
Confidence 3349999999997643
No 152
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=44.68 E-value=9 Score=37.82 Aligned_cols=22 Identities=23% Similarity=0.386 Sum_probs=17.2
Q ss_pred CCCCcEEEEEEEcCCcccchhhcc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
=+.|+..-+. .|||||||+|.-
T Consensus 23 i~~Ge~~~li--G~NGsGKSTLlk 44 (249)
T 2qi9_C 23 VRAGEILHLV--GPNGAGKSTLLA 44 (249)
T ss_dssp EETTCEEEEE--CCTTSSHHHHHH
T ss_pred EcCCCEEEEE--CCCCCcHHHHHH
Confidence 3468776666 899999999864
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=44.62 E-value=4.9 Score=40.50 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=26.2
Q ss_pred CCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
.|+..-++ .|+|||||+++...-. ..|.+|..++-|+
T Consensus 97 ~~~~i~i~--g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLV--GLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEE--CCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 46666665 5899999998764322 1478888888775
No 154
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=44.37 E-value=8 Score=36.91 Aligned_cols=18 Identities=17% Similarity=0.126 Sum_probs=13.5
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.++-..|||||||+|+=+
T Consensus 29 ~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 444458999999999743
No 155
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=44.35 E-value=8.7 Score=38.75 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=17.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+.+-|+ .++|||||.||+-
T Consensus 66 ~~G~l~li~--G~pG~GKTtl~l~ 87 (315)
T 3bh0_A 66 KRRNFVLIA--ARPSMGKTAFALK 87 (315)
T ss_dssp CTTCEEEEE--CCTTSSHHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHHH
Confidence 458777777 7899999999884
No 156
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=44.11 E-value=6.6 Score=38.96 Aligned_cols=12 Identities=17% Similarity=-0.128 Sum_probs=10.4
Q ss_pred CCcccchhhccc
Q psy17657 293 PSACGKTNLAML 304 (652)
Q Consensus 293 PSaCGKTnlAMl 304 (652)
|+|||||.||-.
T Consensus 54 ~pGtGKT~la~~ 65 (331)
T 2r44_A 54 VPGLAKTLSVNT 65 (331)
T ss_dssp CCCHHHHHHHHH
T ss_pred CCCCcHHHHHHH
Confidence 899999999854
No 157
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=44.00 E-value=7.8 Score=36.65 Aligned_cols=12 Identities=42% Similarity=0.501 Sum_probs=10.3
Q ss_pred cCCcccchhhcc
Q psy17657 292 FPSACGKTNLAM 303 (652)
Q Consensus 292 FPSaCGKTnlAM 303 (652)
.|||||||+|.-
T Consensus 8 G~nG~GKTTll~ 19 (189)
T 2i3b_A 8 GPPGVGKTTLIH 19 (189)
T ss_dssp SCCSSCHHHHHH
T ss_pred CCCCChHHHHHH
Confidence 799999999754
No 158
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=43.97 E-value=7.1 Score=33.91 Aligned_cols=13 Identities=23% Similarity=0.189 Sum_probs=11.1
Q ss_pred EcCCcccchhhcc
Q psy17657 291 AFPSACGKTNLAM 303 (652)
Q Consensus 291 AFPSaCGKTnlAM 303 (652)
..|+|||||.||.
T Consensus 49 ~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 49 IGEPGVGKTAIVE 61 (195)
T ss_dssp ECCTTSCHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3799999999975
No 159
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=43.91 E-value=8 Score=38.35 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=16.5
Q ss_pred CcEEEEEEEcCCcccchhhcccCC
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
|+...+. .|||||||+++-+..
T Consensus 48 g~~i~l~--G~~GsGKSTl~~~La 69 (250)
T 3nwj_A 48 GRSMYLV--GMMGSGKTTVGKIMA 69 (250)
T ss_dssp TCCEEEE--CSTTSCHHHHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHHHHH
Confidence 5665565 789999999976543
No 160
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=43.74 E-value=9.2 Score=34.63 Aligned_cols=18 Identities=28% Similarity=0.277 Sum_probs=14.2
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|+|||||++|-.
T Consensus 6 ~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 455568999999999864
No 161
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=43.60 E-value=8 Score=34.76 Aligned_cols=17 Identities=24% Similarity=0.202 Sum_probs=13.3
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|.-..|||||||++|-.
T Consensus 14 i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 14 ILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHH
Confidence 34458999999999864
No 162
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=43.05 E-value=7 Score=42.21 Aligned_cols=22 Identities=32% Similarity=0.465 Sum_probs=17.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+=+. .|||||||+|+.+
T Consensus 37 ~~Ge~~~l~--G~nGsGKSTL~~~ 58 (525)
T 1tf7_A 37 PIGRSTLVS--GTSGTGKTLFSIQ 58 (525)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHH
T ss_pred CCCeEEEEE--cCCCCCHHHHHHH
Confidence 467776666 7999999999886
No 163
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=43.01 E-value=10 Score=37.34 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|||||||+|.-+
T Consensus 29 ~~Ge~~~l~--G~nGsGKSTLl~~ 50 (253)
T 2nq2_C 29 NKGDILAVL--GQNGCGKSTLLDL 50 (253)
T ss_dssp ETTCEEEEE--CCSSSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 468776666 8999999998643
No 164
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=42.72 E-value=10 Score=37.54 Aligned_cols=21 Identities=38% Similarity=0.547 Sum_probs=15.4
Q ss_pred CcEEEEEEEcCCcccchhhcccC
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++-..+. .|+|||||.||-..
T Consensus 49 ~~~vLL~--Gp~GtGKT~la~al 69 (301)
T 3cf0_A 49 SKGVLFY--GPPGCGKTLLAKAI 69 (301)
T ss_dssp CSEEEEE--CSSSSSHHHHHHHH
T ss_pred CceEEEE--CCCCcCHHHHHHHH
Confidence 3444555 89999999998653
No 165
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=42.29 E-value=7.8 Score=40.43 Aligned_cols=22 Identities=32% Similarity=0.513 Sum_probs=17.8
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+ .|+|||||.||+-
T Consensus 61 ~~G~ii~I~--G~pGsGKTtLal~ 82 (356)
T 1u94_A 61 PMGRIVEIY--GPESSGKTTLTLQ 82 (356)
T ss_dssp ETTSEEEEE--CSTTSSHHHHHHH
T ss_pred cCCeEEEEE--CCCCCCHHHHHHH
Confidence 358877777 4999999999874
No 166
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=42.27 E-value=5.9 Score=43.80 Aligned_cols=41 Identities=15% Similarity=0.029 Sum_probs=25.9
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
++-..|+..-|. .|||||||+|+-+.-- ..|-+|.++|-|+
T Consensus 288 l~i~~GeVI~LV--GpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~ 331 (503)
T 2yhs_A 288 VEGKAPFVILMV--GVNGVGKTTTIGKLARQFEQQGKSVMLAAGDT 331 (503)
T ss_dssp CCSCTTEEEEEE--CCTTSSHHHHHHHHHHHHHHTTCCEEEECCCT
T ss_pred eeccCCeEEEEE--CCCcccHHHHHHHHHHHhhhcCCeEEEecCcc
Confidence 344557666555 7899999998643211 1366777776554
No 167
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=41.96 E-value=8.5 Score=36.66 Aligned_cols=15 Identities=33% Similarity=0.505 Sum_probs=11.5
Q ss_pred EEEEcCCcccchhhc
Q psy17657 288 VAAAFPSACGKTNLA 302 (652)
Q Consensus 288 vaaAFPSaCGKTnlA 302 (652)
|.-..|||+|||+|+
T Consensus 4 IVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 4 IVISGPSGTGKSTLL 18 (186)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 444589999999874
No 168
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=41.80 E-value=12 Score=33.60 Aligned_cols=17 Identities=29% Similarity=0.184 Sum_probs=13.3
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..|+|||||++|-+
T Consensus 7 I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 7 VIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44447999999999865
No 169
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=41.78 E-value=9.9 Score=37.73 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=15.7
Q ss_pred cEEEEEEEcCCcccchhhccc
Q psy17657 284 KKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl 304 (652)
+...|+-..|||||||++|=+
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~ 94 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQR 94 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 345566667899999999854
No 170
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=41.72 E-value=9.2 Score=34.33 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=10.6
Q ss_pred EcCCcccchhhcc
Q psy17657 291 AFPSACGKTNLAM 303 (652)
Q Consensus 291 AFPSaCGKTnlAM 303 (652)
..|||||||||.-
T Consensus 32 ~G~NGsGKStll~ 44 (182)
T 3kta_A 32 VGANGSGKSNIGD 44 (182)
T ss_dssp EECTTSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3699999999843
No 171
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=41.64 E-value=11 Score=36.14 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=14.6
Q ss_pred EEEEEEEcCCcccchhhcccC
Q psy17657 285 KMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl~ 305 (652)
-.++. .|+|||||.||-..
T Consensus 53 ~~ll~--G~~GtGKT~la~~l 71 (285)
T 3h4m_A 53 GILLY--GPPGTGKTLLAKAV 71 (285)
T ss_dssp EEEEE--SSSSSSHHHHHHHH
T ss_pred eEEEE--CCCCCcHHHHHHHH
Confidence 34555 89999999998753
No 172
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=41.46 E-value=9.1 Score=37.68 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=16.1
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+..++..+|. .|+|||||.||-.
T Consensus 42 ~~~~~~vli~--G~~G~GKTtl~~~ 64 (386)
T 2qby_A 42 EEKPNNIFIY--GLTGTGKTAVVKF 64 (386)
T ss_dssp TCCCCCEEEE--ECTTSSHHHHHHH
T ss_pred CCCCCeEEEE--CCCCCCHHHHHHH
Confidence 3345555555 7999999999753
No 173
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=41.45 E-value=8.5 Score=38.86 Aligned_cols=22 Identities=18% Similarity=-0.041 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+ .|+|||||.||+-
T Consensus 105 ~~G~i~~i~--G~~GsGKT~la~~ 126 (324)
T 2z43_A 105 ETRTMTEFF--GEFGSGKTQLCHQ 126 (324)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHH
T ss_pred CCCcEEEEE--CCCCCCHhHHHHH
Confidence 457777776 7899999999873
No 174
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.31 E-value=5.5 Score=43.72 Aligned_cols=25 Identities=36% Similarity=0.561 Sum_probs=20.2
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|+.-|.|-..| .|+|||||.||-.
T Consensus 238 ~Gi~pprGILLy----GPPGTGKTlLAkA 262 (467)
T 4b4t_H 238 LGIDPPKGILLY----GPPGTGKTLCARA 262 (467)
T ss_dssp HTCCCCSEEEEC----SCTTSSHHHHHHH
T ss_pred CCCCCCCceEee----CCCCCcHHHHHHH
Confidence 578888885555 8999999999864
No 175
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=40.92 E-value=6.6 Score=37.55 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=16.0
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++..|.| ..+. .|+|||||.||-.
T Consensus 40 ~~~~~~~--vll~--G~~GtGKT~la~~ 63 (268)
T 2r62_A 40 GAKIPKG--VLLV--GPPGTGKTLLAKA 63 (268)
T ss_dssp SCCCCSC--CCCB--CSSCSSHHHHHHH
T ss_pred CCCCCce--EEEE--CCCCCcHHHHHHH
Confidence 3444555 2233 7999999999864
No 176
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=40.77 E-value=7.9 Score=33.81 Aligned_cols=13 Identities=23% Similarity=0.174 Sum_probs=11.1
Q ss_pred EcCCcccchhhcc
Q psy17657 291 AFPSACGKTNLAM 303 (652)
Q Consensus 291 AFPSaCGKTnlAM 303 (652)
..|+|||||.||-
T Consensus 49 ~G~~G~GKT~la~ 61 (187)
T 2p65_A 49 LGDPGVGKTAIVE 61 (187)
T ss_dssp ESCGGGCHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 3799999999975
No 177
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=40.57 E-value=6.6 Score=39.66 Aligned_cols=14 Identities=43% Similarity=0.596 Sum_probs=12.0
Q ss_pred cCCcccchhhcccC
Q psy17657 292 FPSACGKTNLAMLM 305 (652)
Q Consensus 292 FPSaCGKTnlAMl~ 305 (652)
.|+|||||+||-+.
T Consensus 58 Gp~G~GKTTLa~~i 71 (334)
T 1in4_A 58 GPPGLGKTTLAHII 71 (334)
T ss_dssp SSTTSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHH
Confidence 68999999998764
No 178
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=40.41 E-value=9.5 Score=34.60 Aligned_cols=19 Identities=37% Similarity=0.441 Sum_probs=14.8
Q ss_pred EEEEEcCCcccchhhcccC
Q psy17657 287 FVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~ 305 (652)
-|+-..|+|||||++|-+.
T Consensus 4 ~i~i~G~~GsGKst~~~~l 22 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRV 22 (208)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3556689999999998653
No 179
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=40.35 E-value=6.8 Score=38.06 Aligned_cols=20 Identities=35% Similarity=0.355 Sum_probs=14.7
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++-..+. .|+|||||.||-.
T Consensus 54 ~~~vll~--Gp~GtGKT~la~~ 73 (297)
T 3b9p_A 54 AKGLLLF--GPPGNGKTLLARA 73 (297)
T ss_dssp CSEEEEE--SSSSSCHHHHHHH
T ss_pred CCeEEEE--CcCCCCHHHHHHH
Confidence 3344444 8999999999864
No 180
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=40.35 E-value=13 Score=37.07 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=17.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=+ |+..-+. .|||||||+|.=
T Consensus 26 l~i~-Ge~~~i~--G~NGsGKSTLlk 48 (263)
T 2pjz_A 26 LEVN-GEKVIIL--GPNGSGKTTLLR 48 (263)
T ss_dssp EEEC-SSEEEEE--CCTTSSHHHHHH
T ss_pred EEEC-CEEEEEE--CCCCCCHHHHHH
Confidence 3445 8877666 899999999864
No 181
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=40.28 E-value=11 Score=33.51 Aligned_cols=19 Identities=16% Similarity=-0.059 Sum_probs=14.6
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+-..|+|||||++|-+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3555668899999999754
No 182
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.19 E-value=6.9 Score=42.62 Aligned_cols=26 Identities=31% Similarity=0.531 Sum_probs=20.1
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
+|+.-|.|-..| .|+|||||.||-..
T Consensus 211 ~Gi~~prGvLLy----GPPGTGKTlLAkAi 236 (437)
T 4b4t_I 211 MGIKPPKGVILY----GAPGTGKTLLAKAV 236 (437)
T ss_dssp HTCCCCSEEEEE----SSTTTTHHHHHHHH
T ss_pred CCCCCCCCCceE----CCCCchHHHHHHHH
Confidence 577788885555 89999999998643
No 183
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=40.10 E-value=9.5 Score=35.77 Aligned_cols=16 Identities=44% Similarity=0.281 Sum_probs=11.8
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
++-+.|||||||+|.-
T Consensus 9 i~i~G~sGsGKTTl~~ 24 (174)
T 1np6_A 9 LAFAAWSGTGKTTLLK 24 (174)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEEeCCCCCHHHHHH
Confidence 3444599999999843
No 184
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=39.95 E-value=8.2 Score=34.70 Aligned_cols=18 Identities=11% Similarity=0.006 Sum_probs=13.6
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|+|||||++|-+
T Consensus 11 ~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344457999999999854
No 185
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=39.88 E-value=14 Score=39.12 Aligned_cols=24 Identities=29% Similarity=0.303 Sum_probs=17.9
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=++|+..=+. .|||||||+|.-
T Consensus 49 l~i~~Gei~~Ii--GpnGaGKSTLlr 72 (366)
T 3tui_C 49 LHVPAGQIYGVI--GASGAGKSTLIR 72 (366)
T ss_dssp EEECTTCEEEEE--CCTTSSHHHHHH
T ss_pred EEEcCCCEEEEE--cCCCchHHHHHH
Confidence 334578876666 899999999853
No 186
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=39.82 E-value=8.9 Score=38.26 Aligned_cols=21 Identities=19% Similarity=-0.002 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.|+.+-|+ .|+|||||.||+
T Consensus 96 ~~g~i~~i~--G~~gsGKT~la~ 116 (322)
T 2i1q_A 96 ESQSVTEFA--GVFGSGKTQIMH 116 (322)
T ss_dssp ETTEEEEEE--ESTTSSHHHHHH
T ss_pred cCCeEEEEE--CCCCCCHHHHHH
Confidence 457777776 789999999987
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=39.65 E-value=13 Score=33.99 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=14.8
Q ss_pred cEEEEEEEcCCcccchhhccc
Q psy17657 284 KKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl 304 (652)
+-.++. .|+|||||.||..
T Consensus 55 ~~~~l~--G~~GtGKT~la~~ 73 (202)
T 2w58_A 55 KGLYLH--GSFGVGKTYLLAA 73 (202)
T ss_dssp CEEEEE--CSTTSSHHHHHHH
T ss_pred CeEEEE--CCCCCCHHHHHHH
Confidence 455666 7999999999754
No 188
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=39.43 E-value=9 Score=38.71 Aligned_cols=37 Identities=16% Similarity=0.134 Sum_probs=25.9
Q ss_pred CCcEEEEEEEcCCcccchhhcccCC----CCCCceEEEeecce
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMP----TLYDWKVECVGDDI 320 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p----~~pGwkve~VGDDI 320 (652)
.|+..-++ .|+|+|||+|+-..- .-.|.||-.++-|.
T Consensus 104 ~g~vi~lv--G~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLF--GSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEE--ESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEE--CCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 46655555 579999998865432 12588898888776
No 189
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=39.14 E-value=13 Score=33.91 Aligned_cols=20 Identities=15% Similarity=0.159 Sum_probs=14.7
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|....+ ..|+|||||++|-+
T Consensus 9 ~~~I~l--~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 9 GALIVL--EGVDRAGKSTQSRK 28 (215)
T ss_dssp CCEEEE--EESTTSSHHHHHHH
T ss_pred CcEEEE--ECCCCCCHHHHHHH
Confidence 444444 47999999999864
No 190
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=39.11 E-value=14 Score=40.59 Aligned_cols=25 Identities=28% Similarity=0.434 Sum_probs=19.6
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|.-+
T Consensus 365 l~i~~G~~~~iv--G~sGsGKSTLl~~ 389 (595)
T 2yl4_A 365 LSIPSGSVTALV--GPSGSGKSTVLSL 389 (595)
T ss_dssp EEECTTCEEEEE--CCTTSSSTHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 444679887776 8999999999754
No 191
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=39.09 E-value=11 Score=39.30 Aligned_cols=19 Identities=37% Similarity=0.347 Sum_probs=15.6
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
+-|+-+.|||||||.||.-
T Consensus 11 ~~i~i~GptgsGKt~la~~ 29 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIE 29 (316)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHH
Confidence 3456679999999999984
No 192
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=38.86 E-value=9.8 Score=38.89 Aligned_cols=36 Identities=14% Similarity=0.321 Sum_probs=28.4
Q ss_pred ceecCCcCCCCHHHHHHHHHHHhhcCCCeEEEEcCCHH
Q psy17657 28 DLVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEE 65 (652)
Q Consensus 28 ~~~~g~~~~l~~~v~~~V~e~a~L~~P~~I~icdGS~e 65 (652)
-++-|.|.-++-.=+.-+++++++| |.|+|.=++..
T Consensus 5 ~i~~GtFdP~h~GHl~~~~~a~~~~--d~v~v~~~~~~ 40 (365)
T 1lw7_A 5 GVIFGKFYPVHTGHINMIYEAFSKV--DELHVIVCSDT 40 (365)
T ss_dssp EEEEECCSSCCHHHHHHHHHHHTTC--SEEEEEEEECH
T ss_pred EEEEEeeCCCCHHHHHHHHHHHHHC--CEEEEEECCCC
Confidence 3556888889998889999999998 88777655544
No 193
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=38.85 E-value=9.1 Score=37.82 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.1
Q ss_pred EEEEEcCCcccchhhcccC
Q psy17657 287 FVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~ 305 (652)
.|+-..|||||||++|-+.
T Consensus 11 ~i~i~G~~GsGKsTla~~l 29 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGL 29 (233)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4666689999999998653
No 194
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=38.79 E-value=11 Score=33.98 Aligned_cols=18 Identities=11% Similarity=-0.027 Sum_probs=13.5
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|+|||||++|-.
T Consensus 14 ~I~l~G~~GsGKsT~a~~ 31 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEK 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344457899999999853
No 195
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=38.54 E-value=15 Score=40.34 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=20.3
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|+..-+. .|||||||+|+-+.
T Consensus 362 l~i~~G~~~~iv--G~sGsGKSTll~~l 387 (578)
T 4a82_A 362 LSIEKGETVAFV--GMSGGGKSTLINLI 387 (578)
T ss_dssp EEECTTCEEEEE--CSTTSSHHHHHTTT
T ss_pred EEECCCCEEEEE--CCCCChHHHHHHHH
Confidence 344679888777 79999999997654
No 196
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=38.54 E-value=13 Score=40.61 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=19.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|+-+
T Consensus 364 ~~i~~G~~~~iv--G~sGsGKSTLl~~ 388 (582)
T 3b60_A 364 LKIPAGKTVALV--GRSGSGKSTIASL 388 (582)
T ss_dssp EEECTTCEEEEE--ECTTSSHHHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHH
Confidence 444679887777 7999999999754
No 197
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=38.52 E-value=16 Score=40.23 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=19.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|+-+
T Consensus 376 l~i~~G~~~~iv--G~sGsGKSTll~~ 400 (598)
T 3qf4_B 376 FHIKPGQKVALV--GPTGSGKTTIVNL 400 (598)
T ss_dssp EECCTTCEEEEE--CCTTSSTTHHHHH
T ss_pred EEEcCCCEEEEE--CCCCCcHHHHHHH
Confidence 445678887777 8999999998754
No 198
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=38.48 E-value=9.5 Score=37.76 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=14.2
Q ss_pred cEEEEEEEcCCcccchhhccc
Q psy17657 284 KKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl 304 (652)
.-.++. .|+|||||.||-.
T Consensus 38 ~~lll~--G~~GtGKT~la~~ 56 (324)
T 1l8q_A 38 NPIFIY--GSVGTGKTHLLQA 56 (324)
T ss_dssp SSEEEE--CSSSSSHHHHHHH
T ss_pred CeEEEE--CCCCCcHHHHHHH
Confidence 345555 6999999999864
No 199
>2kwh_A RAla-binding protein 1; GTPase activation, transport protein; NMR {Homo sapiens} PDB: 2kwi_B*
Probab=38.42 E-value=19 Score=29.16 Aligned_cols=26 Identities=31% Similarity=0.299 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcccc
Q psy17657 619 GSDLPPAIHAEISGLRQRLKSYHPLW 644 (652)
Q Consensus 619 g~~lP~~i~~~l~~l~~rl~~~~~~~ 644 (652)
|++-|.+|.+|+..|+..|+++++.-
T Consensus 1 ~p~~~e~I~~El~kQe~lL~~LH~e~ 26 (56)
T 2kwh_A 1 GSETQAGIKEEIRRQEFLLNSLHRDL 26 (56)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999888754
No 200
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=38.32 E-value=13 Score=39.26 Aligned_cols=23 Identities=30% Similarity=0.348 Sum_probs=16.7
Q ss_pred CCCCcEEEEEEEcCCcccchhhccc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
-|.|+..-+ ..|||||||+|+.+
T Consensus 166 i~~~~~i~l--~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 166 IPKKRYWLF--KGPIDSGKTTLAAA 188 (377)
T ss_dssp CTTCCEEEE--ECSTTSSHHHHHHH
T ss_pred cCCCCEEEE--ECCCCCCHHHHHHH
Confidence 345654444 48999999999875
No 201
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=38.22 E-value=12 Score=34.40 Aligned_cols=20 Identities=30% Similarity=0.285 Sum_probs=15.1
Q ss_pred EEEEEEcCCcccchhhcccC
Q psy17657 286 MFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~ 305 (652)
..|+-..|+|||||++|-..
T Consensus 21 ~~I~l~G~~GsGKST~a~~L 40 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKL 40 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34555589999999998653
No 202
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=37.83 E-value=9.7 Score=37.60 Aligned_cols=20 Identities=25% Similarity=0.213 Sum_probs=14.6
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+...+|. .|+|||||.||-.
T Consensus 44 ~~~vll~--G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 44 PSNALLY--GLTGTGKTAVARL 63 (387)
T ss_dssp CCCEEEC--BCTTSSHHHHHHH
T ss_pred CCcEEEE--CCCCCCHHHHHHH
Confidence 4445554 7999999999753
No 203
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=37.54 E-value=13 Score=35.84 Aligned_cols=18 Identities=22% Similarity=0.235 Sum_probs=13.6
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
-|.-..|||||||++|-.
T Consensus 34 ~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 34 AILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp EEEEESCGGGTTHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344447999999999864
No 204
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=37.53 E-value=11 Score=39.17 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=17.7
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+ .|+|||||+||+.
T Consensus 59 ~~G~iv~I~--G~pGsGKTtLal~ 80 (349)
T 2zr9_A 59 PRGRVIEIY--GPESSGKTTVALH 80 (349)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHH
T ss_pred cCCeEEEEE--CCCCCCHHHHHHH
Confidence 358877776 6999999999874
No 205
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=37.29 E-value=11 Score=34.18 Aligned_cols=29 Identities=17% Similarity=0.158 Sum_probs=19.3
Q ss_pred EEEEEcCCcccchhhccc-CCCCCCceEEE
Q psy17657 287 FVAAAFPSACGKTNLAML-MPTLYDWKVEC 315 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl-~p~~pGwkve~ 315 (652)
+|+-..|+|||||++|=+ ..-+.|+++..
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 455558999999999753 33345676543
No 206
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=37.25 E-value=13 Score=36.39 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=17.4
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
||--|--.-...+-.+|+-..++|||||+++-.
T Consensus 8 ~~~~~~~~~~~~~~~~i~~~G~~g~GKst~~~~ 40 (223)
T 3ld9_A 8 HMGTLEAQTQGPGSMFITFEGIDGSGKTTQSHL 40 (223)
T ss_dssp -----------CCCEEEEEECSTTSSHHHHHHH
T ss_pred ccccccccccCCCCeEEEEECCCCCCHHHHHHH
Confidence 664333222223456788889999999998754
No 207
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=36.41 E-value=12 Score=32.97 Aligned_cols=15 Identities=20% Similarity=0.275 Sum_probs=11.9
Q ss_pred EEcCCcccchhhccc
Q psy17657 290 AAFPSACGKTNLAML 304 (652)
Q Consensus 290 aAFPSaCGKTnlAMl 304 (652)
-..|+|||||++|-.
T Consensus 7 l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 7 MVGARGCGMTTVGRE 21 (173)
T ss_dssp EESCTTSSHHHHHHH
T ss_pred EECCCCCCHHHHHHH
Confidence 346899999999864
No 208
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=36.25 E-value=13 Score=36.49 Aligned_cols=17 Identities=24% Similarity=0.286 Sum_probs=12.7
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
++--.|||||||+|.-+
T Consensus 27 ~~liG~nGsGKSTLl~~ 43 (240)
T 2onk_A 27 CVLLGPTGAGKSVFLEL 43 (240)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34448999999998643
No 209
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=36.18 E-value=15 Score=40.26 Aligned_cols=25 Identities=32% Similarity=0.464 Sum_probs=19.3
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++=+.|+..-+. .|||||||+|+-+
T Consensus 364 l~i~~G~~~~iv--G~sGsGKSTll~~ 388 (582)
T 3b5x_A 364 FSIPQGKTVALV--GRSGSGKSTIANL 388 (582)
T ss_pred EEECCCCEEEEE--CCCCCCHHHHHHH
Confidence 334578887777 8999999998754
No 210
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=36.11 E-value=12 Score=40.37 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=14.8
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
-|+-+.|||||||.||..
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 456678999999999874
No 211
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=36.02 E-value=15 Score=35.55 Aligned_cols=17 Identities=29% Similarity=0.333 Sum_probs=13.4
Q ss_pred EEEEEEEcCCcccchhhcc
Q psy17657 285 KMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAM 303 (652)
-..+. .|+|||||.||-
T Consensus 69 ~vll~--G~~GtGKT~la~ 85 (309)
T 3syl_A 69 HMSFT--GNPGTGKTTVAL 85 (309)
T ss_dssp EEEEE--ECTTSSHHHHHH
T ss_pred eEEEE--CCCCCCHHHHHH
Confidence 34555 799999999985
No 212
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=35.99 E-value=12 Score=34.46 Aligned_cols=41 Identities=12% Similarity=0.186 Sum_probs=24.5
Q ss_pred HHhhccChHHHHHHHHHHHHHHhhh------hCCCCCHHHHHHHHHH
Q psy17657 593 KELFYIDKDFWEQELNAIEKYFNDQ------VGSDLPPAIHAEISGL 633 (652)
Q Consensus 593 ~~l~~v~~~~W~~E~~~i~~~~~~~------~g~~lP~~i~~~l~~l 633 (652)
++.+.-+-+.+.++...+.+||.++ -++.-+.++.+++.+.
T Consensus 165 ~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~ 211 (216)
T 3fb4_A 165 PETVKNRLDVNMKQTQPLLDFYSQKGVLKDIDGQQDIKKVFVDINDL 211 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHcCCcEEEEECCCCHHHHHHHHHHH
Confidence 3444444577888888888998742 1334455665555443
No 213
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=35.86 E-value=12 Score=33.50 Aligned_cols=17 Identities=12% Similarity=0.130 Sum_probs=13.0
Q ss_pred EEEcCCcccchhhcccC
Q psy17657 289 AAAFPSACGKTNLAMLM 305 (652)
Q Consensus 289 aaAFPSaCGKTnlAMl~ 305 (652)
+-..|+|||||++|-..
T Consensus 6 ~l~G~~GsGKsT~a~~L 22 (184)
T 2iyv_A 6 VLVGLPGSGKSTIGRRL 22 (184)
T ss_dssp EEECSTTSSHHHHHHHH
T ss_pred EEECCCCCCHHHHHHHH
Confidence 33478999999998643
No 214
>3ecf_A NTF2-like protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Anabaena variabilis atcc 29413} SCOP: d.17.4.21
Probab=35.75 E-value=17 Score=33.43 Aligned_cols=31 Identities=32% Similarity=0.896 Sum_probs=23.4
Q ss_pred CcEEEeeeeecCCCCC-cccCCCCch------hHHHHHH
Q psy17657 517 PKIFHVNWFRKDKDGK-FMWPGFGDN------IRVLDWI 548 (652)
Q Consensus 517 PkIF~VNwFrkd~~Gk-fLWPGfgeN------~RVL~WI 548 (652)
=-+|| |+||-|++|- ++||=|--. -|.+.|+
T Consensus 88 ~~~~~-~~f~~deegi~~iwp~~dpk~~~~d~~~l~q~l 125 (130)
T 3ecf_A 88 LYTLH-NFFRLDEEGIVYVWPMFDPKAVMENPDALIQWL 125 (130)
T ss_dssp EEEEE-EEEEEETTEEEEEECCBCHHHHHHCHHHHHHHH
T ss_pred EEEEe-ehheecccCcEEEEeccCHHHhhcCHHHHHHHh
Confidence 34666 9999999995 899988633 3567776
No 215
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=35.58 E-value=16 Score=40.16 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=20.3
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|+..-+. .|||||||+|+-+.
T Consensus 364 l~i~~Ge~~~iv--G~sGsGKSTll~~l 389 (587)
T 3qf4_A 364 FSVKPGSLVAVL--GETGSGKSTLMNLI 389 (587)
T ss_dssp EEECTTCEEEEE--CSSSSSHHHHHHTT
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 344679887777 89999999997654
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=35.38 E-value=12 Score=37.14 Aligned_cols=15 Identities=27% Similarity=0.319 Sum_probs=12.3
Q ss_pred EEEEcCCcccchhhc
Q psy17657 288 VAAAFPSACGKTNLA 302 (652)
Q Consensus 288 vaaAFPSaCGKTnlA 302 (652)
++-..|||||||+|.
T Consensus 5 v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 5 IMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556689999999984
No 217
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=35.07 E-value=14 Score=36.71 Aligned_cols=17 Identities=18% Similarity=0.014 Sum_probs=13.5
Q ss_pred EEEEEEEcCCcccchhhcc
Q psy17657 285 KMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAM 303 (652)
..+|. .|+|||||.||-
T Consensus 46 ~~li~--G~~G~GKTtl~~ 62 (389)
T 1fnn_A 46 RATLL--GRPGTGKTVTLR 62 (389)
T ss_dssp EEEEE--CCTTSSHHHHHH
T ss_pred eEEEE--CCCCCCHHHHHH
Confidence 45555 799999999975
No 218
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=35.01 E-value=10 Score=41.98 Aligned_cols=38 Identities=26% Similarity=0.295 Sum_probs=25.4
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC----CCCCCceEEEe-ecce
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM----PTLYDWKVECV-GDDI 320 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~----p~~pGwkve~V-GDDI 320 (652)
.+|+...+. .|||||||+|+-+. .+..|+++.++ ||++
T Consensus 367 ~~G~iI~Li--G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 367 RQGFTVFFT--GLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GSCEEEEEE--ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccceEEEEE--CCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 368777777 79999999987533 22346667644 4444
No 219
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=34.93 E-value=12 Score=40.08 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=17.2
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++|++.=+. .|||||||+|..+
T Consensus 155 ~~Gq~~~Iv--G~sGsGKSTLl~~ 176 (438)
T 2dpy_A 155 GRGQRMGLF--AGSGVGKSVLLGM 176 (438)
T ss_dssp BTTCEEEEE--ECTTSSHHHHHHH
T ss_pred cCCCEEEEE--CCCCCCHHHHHHH
Confidence 467777666 6999999999754
No 220
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=34.53 E-value=12 Score=39.26 Aligned_cols=22 Identities=32% Similarity=0.452 Sum_probs=17.4
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|. .|+|||||+||+.
T Consensus 59 ~~G~i~~I~--GppGsGKSTLal~ 80 (356)
T 3hr8_A 59 PRGRIVEIF--GQESSGKTTLALH 80 (356)
T ss_dssp ETTEEEEEE--ESTTSSHHHHHHH
T ss_pred cCCcEEEEE--CCCCCCHHHHHHH
Confidence 357777776 6899999999873
No 221
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=34.51 E-value=13 Score=35.81 Aligned_cols=35 Identities=20% Similarity=0.278 Sum_probs=23.4
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEee
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVG 317 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VG 317 (652)
-|.|+.|++.+| |+|||++|..... .-|.||-.|-
T Consensus 17 ~~~vI~v~s~kG-----------GvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 17 IKSRIAVMSGKG-----------GVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp CSCEEEEECSSS-----------CTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEEcCCC-----------CCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456777777776 8999998874332 1477765543
No 222
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=34.12 E-value=9.8 Score=33.53 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=11.0
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.+|=.
T Consensus 31 G~~GtGKt~lA~~ 43 (145)
T 3n70_A 31 GAPGTGRMTGARY 43 (145)
T ss_dssp SSTTSSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 5899999999864
No 223
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=33.89 E-value=18 Score=34.29 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=12.9
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..|+|||||+++=+
T Consensus 19 i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 19 IAIDGPASSGKSTVAKI 35 (236)
T ss_dssp EEEECSSCSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44458999999998743
No 224
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=33.77 E-value=9.9 Score=38.01 Aligned_cols=17 Identities=29% Similarity=0.405 Sum_probs=13.4
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
..+. .|+|||||.||-.
T Consensus 54 vLl~--GppGtGKT~la~a 70 (322)
T 3eie_A 54 ILLY--GPPGTGKSYLAKA 70 (322)
T ss_dssp EEEE--CSSSSCHHHHHHH
T ss_pred EEEE--CCCCCcHHHHHHH
Confidence 4444 8999999999864
No 225
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=33.69 E-value=14 Score=34.61 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=13.9
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+-..|+|||||++|=.
T Consensus 9 ~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 455558999999999843
No 226
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=33.66 E-value=15 Score=35.62 Aligned_cols=34 Identities=15% Similarity=0.155 Sum_probs=21.6
Q ss_pred EEEEEcCCcccchhhcccCCCC---CCceEEE-eecce
Q psy17657 287 FVAAAFPSACGKTNLAMLMPTL---YDWKVEC-VGDDI 320 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~p~~---pGwkve~-VGDDI 320 (652)
.|.-..++|||||++|-..-.. .||.+-. -+|++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 4555578999999998653322 5776542 24554
No 227
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=33.35 E-value=14 Score=38.53 Aligned_cols=19 Identities=42% Similarity=0.530 Sum_probs=15.0
Q ss_pred EEEEEcCCcccchhhcccC
Q psy17657 287 FVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~ 305 (652)
-|+-..|+|||||+||...
T Consensus 7 ~i~i~GptGsGKTtla~~L 25 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMAL 25 (323)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3555689999999999743
No 228
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=33.25 E-value=15 Score=32.71 Aligned_cols=14 Identities=36% Similarity=0.437 Sum_probs=11.5
Q ss_pred EcCCcccchhhccc
Q psy17657 291 AFPSACGKTNLAML 304 (652)
Q Consensus 291 AFPSaCGKTnlAMl 304 (652)
..|+|||||.||-.
T Consensus 44 ~G~~G~GKT~l~~~ 57 (226)
T 2chg_A 44 SGPPGTGKTATAIA 57 (226)
T ss_dssp ECSTTSSHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 36999999999753
No 229
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=33.03 E-value=16 Score=32.53 Aligned_cols=17 Identities=29% Similarity=0.131 Sum_probs=12.5
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..++|||||++|-+
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEECSTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 34446789999998854
No 230
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=32.89 E-value=16 Score=35.19 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=19.2
Q ss_pred EEEEEEEcCCcccchhhcccC-CCCCCc
Q psy17657 285 KMFVAAAFPSACGKTNLAMLM-PTLYDW 311 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl~-p~~pGw 311 (652)
-.+|+-..++|||||++|-+. ..+.++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~ 51 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCEDW 51 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCTTE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 357777788999999998543 434553
No 231
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=32.86 E-value=16 Score=36.40 Aligned_cols=20 Identities=35% Similarity=0.503 Sum_probs=15.3
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|+-.++. .|+|||||.||-.
T Consensus 70 ~~~vLl~--GppGtGKT~la~~ 89 (368)
T 3uk6_A 70 GRAVLIA--GQPGTGKTAIAMG 89 (368)
T ss_dssp TCEEEEE--ESTTSSHHHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHHHH
Confidence 4455555 7999999999874
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=32.77 E-value=13 Score=37.68 Aligned_cols=36 Identities=25% Similarity=0.230 Sum_probs=24.3
Q ss_pred CcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 283 GKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
++..-++ .|+|||||+++...-. ..|.||-.++-|+
T Consensus 98 ~~vi~i~--G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLV--GVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEE--CSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEE--CCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 4444444 6999999987653221 2488888888775
No 233
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=32.77 E-value=74 Score=32.13 Aligned_cols=30 Identities=27% Similarity=0.524 Sum_probs=25.4
Q ss_pred EEeec----ceEEEEeCCCccEEEeCCCCcee--eecC
Q psy17657 314 ECVGD----DIAWMKFDEEGNLRAINPESGFF--GVAP 345 (652)
Q Consensus 314 e~VGD----DIAWmr~~~dGrl~AINPE~GfF--GVap 345 (652)
++||+ |+.-+-|+.||.||||+ .|-+ +..|
T Consensus 127 ~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P 162 (236)
T 1tl2_A 127 TEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPP 162 (236)
T ss_dssp EEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCC
T ss_pred cEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCC
Confidence 67777 99999999999999999 6765 6667
No 234
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=32.73 E-value=8.6 Score=37.74 Aligned_cols=13 Identities=15% Similarity=0.079 Sum_probs=10.4
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|||||||+|.-+
T Consensus 34 GpnGsGKSTll~~ 46 (227)
T 1qhl_A 34 GGNGAGKSTTMAA 46 (227)
T ss_dssp SCCSHHHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 6889999998543
No 235
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=32.63 E-value=17 Score=35.38 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=17.1
Q ss_pred EEEEEcCCcccchhhcccCC-CCCCc
Q psy17657 287 FVAAAFPSACGKTNLAMLMP-TLYDW 311 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~p-~~pGw 311 (652)
.|.-..|||||||++|-..- .+.||
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~ 29 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGF 29 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCc
Confidence 45556899999999985432 23565
No 236
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=32.50 E-value=15 Score=34.67 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=16.9
Q ss_pred EcCCcccchhhccc-CCCC--CCceEEEee
Q psy17657 291 AFPSACGKTNLAML-MPTL--YDWKVECVG 317 (652)
Q Consensus 291 AFPSaCGKTnlAMl-~p~~--pGwkve~VG 317 (652)
+.|||||||+|+.- .+-+ .|++|-+|=
T Consensus 10 ~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 10 VGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 34899999998642 2322 477765443
No 237
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=32.37 E-value=15 Score=32.81 Aligned_cols=13 Identities=38% Similarity=0.409 Sum_probs=11.0
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||-.
T Consensus 52 G~~G~GKT~l~~~ 64 (250)
T 1njg_A 52 GTRGVGKTSIARL 64 (250)
T ss_dssp CSTTSCHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 7899999999753
No 238
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=32.22 E-value=15 Score=32.19 Aligned_cols=17 Identities=18% Similarity=0.116 Sum_probs=12.8
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..++|||||++|-+
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 3 IYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEESCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33447899999999764
No 239
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=32.18 E-value=13 Score=37.30 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=11.9
Q ss_pred EcCCcccchhhccc
Q psy17657 291 AFPSACGKTNLAML 304 (652)
Q Consensus 291 AFPSaCGKTnlAMl 304 (652)
..|+|||||.||..
T Consensus 52 ~Gp~G~GKTtla~~ 65 (340)
T 1sxj_C 52 YGPPGTGKTSTIVA 65 (340)
T ss_dssp ECSSSSSHHHHHHH
T ss_pred ECCCCCCHHHHHHH
Confidence 36999999999875
No 240
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=32.13 E-value=11 Score=38.07 Aligned_cols=18 Identities=28% Similarity=0.360 Sum_probs=13.7
Q ss_pred EEEEEEEcCCcccchhhccc
Q psy17657 285 KMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl 304 (652)
-..+. .|+|||||.||-.
T Consensus 47 ~iLL~--GppGtGKT~la~a 64 (322)
T 1xwi_A 47 GILLF--GPPGTGKSYLAKA 64 (322)
T ss_dssp EEEEE--SSSSSCHHHHHHH
T ss_pred eEEEE--CCCCccHHHHHHH
Confidence 34444 8999999999854
No 241
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=32.06 E-value=18 Score=38.61 Aligned_cols=33 Identities=18% Similarity=0.291 Sum_probs=22.2
Q ss_pred EEEEcCCcccchhhccc----CCCCCCceEEEeecceE
Q psy17657 288 VAAAFPSACGKTNLAML----MPTLYDWKVECVGDDIA 321 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl----~p~~pGwkve~VGDDIA 321 (652)
++-..|+|||||+|.-+ .++. .-+|.++||+|-
T Consensus 170 i~I~GpnGSGKTTlL~allg~l~~~-~g~I~~~ed~ie 206 (418)
T 1p9r_A 170 ILVTGPTGSGKSTTLYAGLQELNSS-ERNILTVEDPIE 206 (418)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHCCT-TSCEEEEESSCC
T ss_pred EEEECCCCCCHHHHHHHHHhhcCCC-CCEEEEecccch
Confidence 44448999999997421 1222 347999999884
No 242
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=32.04 E-value=17 Score=33.60 Aligned_cols=40 Identities=10% Similarity=0.170 Sum_probs=23.8
Q ss_pred HhhccChHHHHHHHHHHHHHHhhh------hCCCCCHHHHHHHHHH
Q psy17657 594 ELFYIDKDFWEQELNAIEKYFNDQ------VGSDLPPAIHAEISGL 633 (652)
Q Consensus 594 ~l~~v~~~~W~~E~~~i~~~~~~~------~g~~lP~~i~~~l~~l 633 (652)
+.+.-+-+.+.++...+.+||.++ -++.-+.++.+++.+.
T Consensus 166 e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~ 211 (216)
T 3dl0_A 166 ETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVL 211 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHH
Confidence 333344477888888888998742 1334455555555443
No 243
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=31.86 E-value=18 Score=40.30 Aligned_cols=24 Identities=33% Similarity=0.303 Sum_probs=18.0
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++=+.|+..=|. .|||||||+|.-
T Consensus 343 l~I~~Ge~vaIi--GpnGsGKSTLl~ 366 (670)
T 3ux8_A 343 VKIPLGTFVAVT--GVSGSGKSTLVN 366 (670)
T ss_dssp EEEETTSEEEEE--CSTTSSHHHHHT
T ss_pred eEecCCCEEEEE--eeCCCCHHHHHH
Confidence 333568776555 899999999974
No 244
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=31.51 E-value=17 Score=38.18 Aligned_cols=31 Identities=16% Similarity=0.235 Sum_probs=21.0
Q ss_pred EEEEEcCCcccchhhcccC-CCCCCceEEEeecce
Q psy17657 287 FVAAAFPSACGKTNLAMLM-PTLYDWKVECVGDDI 320 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~-p~~pGwkve~VGDDI 320 (652)
-|+-..|+|||||.||... -.++| ++|.=|-
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l~~---eiIs~Ds 73 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHFPL---EVINSDK 73 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTSCE---EEEECCS
T ss_pred eEEEECCCCCCHHHHHHHHHHHCCC---cEEcccc
Confidence 4555689999999999843 33444 6665443
No 245
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=31.50 E-value=15 Score=34.25 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=23.9
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---C-CCceEEEeec
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---L-YDWKVECVGD 318 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~-pGwkve~VGD 318 (652)
.|-|+.|++++| |+|||++|..... . .|.||=.|-=
T Consensus 3 ~~~vI~v~s~kG-----------GvGKTt~a~~LA~~la~~~g~~VlliD~ 42 (245)
T 3ea0_A 3 AKRVFGFVSAKG-----------GDGGSCIAANFAFALSQEPDIHVLAVDI 42 (245)
T ss_dssp CCEEEEEEESST-----------TSSHHHHHHHHHHHHTTSTTCCEEEEEC
T ss_pred CCeEEEEECCCC-----------CcchHHHHHHHHHHHHhCcCCCEEEEEC
Confidence 356677777666 8999998874321 2 3888766643
No 246
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=31.04 E-value=15 Score=37.89 Aligned_cols=20 Identities=30% Similarity=0.283 Sum_probs=14.3
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+..-|+ .|||||||+|+-
T Consensus 174 ~G~~i~iv--G~sGsGKSTll~ 193 (361)
T 2gza_A 174 LERVIVVA--GETGSGKTTLMK 193 (361)
T ss_dssp TTCCEEEE--ESSSSCHHHHHH
T ss_pred cCCEEEEE--CCCCCCHHHHHH
Confidence 46654444 799999999753
No 247
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=31.02 E-value=19 Score=37.52 Aligned_cols=40 Identities=15% Similarity=0.228 Sum_probs=25.5
Q ss_pred CCCcEEEEEEEcCCcccchhhcccC----CCCCCceEEEeecceEE
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAMLM----PTLYDWKVECVGDDIAW 322 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl~----p~~pGwkve~VGDDIAW 322 (652)
+.|+. ++-..|||||||+|.=+. ++...=+|.++||++.|
T Consensus 134 ~~g~~--i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~ 177 (372)
T 2ewv_A 134 RKMGL--ILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY 177 (372)
T ss_dssp SSSEE--EEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS
T ss_pred cCCCE--EEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh
Confidence 34554 445589999999985322 22213467788988765
No 248
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=30.68 E-value=16 Score=34.06 Aligned_cols=17 Identities=29% Similarity=0.219 Sum_probs=13.2
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..|+|||||++|=+
T Consensus 8 I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 8 VMISGAPASGKGTQCEL 24 (222)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44457999999998764
No 249
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=30.37 E-value=21 Score=37.23 Aligned_cols=18 Identities=22% Similarity=0.333 Sum_probs=13.8
Q ss_pred CcEEEEEEEcCCcccchhhc
Q psy17657 283 GKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlA 302 (652)
|+..-|. .|+|||||||.
T Consensus 26 ~~~~~i~--G~nG~GKstll 43 (430)
T 1w1w_A 26 SNFTSII--GPNGSGKSNMM 43 (430)
T ss_dssp CSEEEEE--CSTTSSHHHHH
T ss_pred CCEEEEE--CCCCCCHHHHH
Confidence 5555555 89999999974
No 250
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=30.36 E-value=14 Score=36.58 Aligned_cols=13 Identities=31% Similarity=0.363 Sum_probs=11.3
Q ss_pred EcCCcccchhhcc
Q psy17657 291 AFPSACGKTNLAM 303 (652)
Q Consensus 291 AFPSaCGKTnlAM 303 (652)
..|+|||||+||.
T Consensus 42 ~Gp~G~GKTtl~~ 54 (354)
T 1sxj_E 42 YGPNGTGKKTRCM 54 (354)
T ss_dssp ECSTTSSHHHHHH
T ss_pred ECCCCCCHHHHHH
Confidence 4799999999985
No 251
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=30.34 E-value=20 Score=37.64 Aligned_cols=17 Identities=24% Similarity=0.151 Sum_probs=13.2
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|.-..|||||||++|-.
T Consensus 261 Iil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 261 VVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp EEEESCTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 33448999999999864
No 252
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=30.18 E-value=18 Score=39.53 Aligned_cols=14 Identities=21% Similarity=0.313 Sum_probs=11.3
Q ss_pred CCcccchhhcccCC
Q psy17657 293 PSACGKTNLAMLMP 306 (652)
Q Consensus 293 PSaCGKTnlAMl~p 306 (652)
|+|||||.||-...
T Consensus 49 pPGtGKT~LAraLa 62 (500)
T 3nbx_X 49 PPGIAKSLIARRLK 62 (500)
T ss_dssp CSSSSHHHHHHHGG
T ss_pred CchHHHHHHHHHHH
Confidence 88999999986543
No 253
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=29.90 E-value=3.3 Score=41.45 Aligned_cols=66 Identities=23% Similarity=0.317 Sum_probs=40.5
Q ss_pred cCCcccchhhcccCCCCCCceE--EEeecceEEEEeCCCccEEEeCCCCceeeecCCCC---CCCCHHHHhhcc
Q psy17657 292 FPSACGKTNLAMLMPTLYDWKV--ECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTS---CNTNPQAMQTIF 360 (652)
Q Consensus 292 FPSaCGKTnlAMl~p~~pGwkv--e~VGDDIAWmr~~~dGrl~AINPE~GfFGVapGtn---~~tnP~am~~l~ 360 (652)
+|.+|+=|+|||+.-- -|-+| +.+-|.|--+=+..|| +.-||..||-|=.-+.+ .--.|.+|..+.
T Consensus 46 ~~~gCe~tSlam~L~y-~G~~~~~~~la~~l~~~p~~~~g--~~gnP~~gFvG~p~~~~~~g~giy~~~i~~~a 116 (236)
T 3erv_A 46 LDRGCEVTSLAMMLQY-AGITVDKMKLANEIKKVDFMNDG--VRGNPNEGFVGNIYTFSESGYGVYHGPLFQLA 116 (236)
T ss_dssp CTTCHHHHHHHHHHHH-TTCCCCHHHHHHHSCEECSEETT--EECCTTTSEEBCSSCTTSCBCCCCHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH-cCcCCCHHHHHHHHhhCcccccC--CCCCCccCccCCccccCCCcceeecHHHHHHH
Confidence 5899999999998532 45443 2444555333344566 56799999988642211 223566665553
No 254
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=29.83 E-value=21 Score=39.74 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=17.4
Q ss_pred eCCCCcEEEEEEEcCCcccchhhc
Q psy17657 279 TNPEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 279 t~P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+=++|+.+-+. .|||||||+|.
T Consensus 40 ~i~~Ge~~~li--GpNGaGKSTLl 61 (670)
T 3ux8_A 40 EIPRGKLVVLT--GLSGSGKSSLA 61 (670)
T ss_dssp EEETTSEEEEE--CSTTSSHHHHH
T ss_pred EECCCCEEEEE--CCCCCCHHHHh
Confidence 33568877666 89999999994
No 255
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=29.82 E-value=19 Score=37.95 Aligned_cols=21 Identities=33% Similarity=0.398 Sum_probs=16.6
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+.+-|+ .|+|+|||.||+-
T Consensus 199 ~G~l~ii~--G~pg~GKT~lal~ 219 (444)
T 2q6t_A 199 PGSLNIIA--ARPAMGKTAFALT 219 (444)
T ss_dssp TTCEEEEE--ECTTSCHHHHHHH
T ss_pred CCcEEEEE--eCCCCCHHHHHHH
Confidence 47766665 7899999999883
No 256
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=29.81 E-value=11 Score=33.11 Aligned_cols=15 Identities=7% Similarity=-0.119 Sum_probs=12.2
Q ss_pred cCCcccchhhcccCC
Q psy17657 292 FPSACGKTNLAMLMP 306 (652)
Q Consensus 292 FPSaCGKTnlAMl~p 306 (652)
.|+|||||.+|-...
T Consensus 34 G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 34 GEAGSPFETVARYFH 48 (143)
T ss_dssp EETTCCHHHHHGGGC
T ss_pred CCCCccHHHHHHHHH
Confidence 589999999987544
No 257
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=29.76 E-value=28 Score=30.03 Aligned_cols=23 Identities=17% Similarity=0.221 Sum_probs=17.9
Q ss_pred CCCCcEEEEEEEcCCcccchhhc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlA 302 (652)
.|.-+..-|+-..++++|||+|.
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli 26 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALT 26 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHH
T ss_pred CCCCCceEEEEECCCCCCHHHHH
Confidence 45556666777789999999985
No 258
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=29.66 E-value=18 Score=34.67 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=24.8
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC-C-CCceEEEeecc
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT-L-YDWKVECVGDD 319 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~-~-pGwkve~VGDD 319 (652)
.|-|+.|++++| |+|||++|..... + .|.||-.|-=|
T Consensus 26 ~~~vI~v~s~kG-----------GvGKTT~a~~LA~~la~g~~VlliD~D 64 (267)
T 3k9g_A 26 KPKIITIASIKG-----------GVGKSTSAIILATLLSKNNKVLLIDMD 64 (267)
T ss_dssp CCEEEEECCSSS-----------SSCHHHHHHHHHHHHTTTSCEEEEEEC
T ss_pred CCeEEEEEeCCC-----------CchHHHHHHHHHHHHHCCCCEEEEECC
Confidence 567777777776 8999998763211 1 57777666533
No 259
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=29.51 E-value=21 Score=34.39 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.1
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
.+|+--.|+|||||+++-+
T Consensus 27 ~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp EEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 5666678999999998754
No 260
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=29.32 E-value=19 Score=34.10 Aligned_cols=19 Identities=21% Similarity=0.146 Sum_probs=15.2
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
++|+-..++|||||+++-.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~ 21 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKL 21 (241)
T ss_dssp EEEEEEECTTSSHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4677778999999998754
No 261
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=29.26 E-value=26 Score=33.66 Aligned_cols=16 Identities=38% Similarity=0.320 Sum_probs=12.7
Q ss_pred EEEcCCcccchhhccc
Q psy17657 289 AAAFPSACGKTNLAML 304 (652)
Q Consensus 289 aaAFPSaCGKTnlAMl 304 (652)
.-..|+|||||.||-.
T Consensus 68 Ll~G~~GtGKT~la~~ 83 (272)
T 1d2n_A 68 LLEGPPHSGKTALAAK 83 (272)
T ss_dssp EEECSTTSSHHHHHHH
T ss_pred EEECCCCCcHHHHHHH
Confidence 3347999999999864
No 262
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=29.07 E-value=20 Score=35.65 Aligned_cols=19 Identities=16% Similarity=0.006 Sum_probs=14.0
Q ss_pred cEEEEEEEcCCcccchhhccc
Q psy17657 284 KKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl 304 (652)
+..++. .|+|||||.||-.
T Consensus 46 ~~vll~--G~~G~GKT~la~~ 64 (384)
T 2qby_B 46 FSNLFL--GLTGTGKTFVSKY 64 (384)
T ss_dssp CEEEEE--ECTTSSHHHHHHH
T ss_pred CcEEEE--CCCCCCHHHHHHH
Confidence 344444 7999999999863
No 263
>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}
Probab=29.02 E-value=55 Score=24.80 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=16.2
Q ss_pred CCceEEEeecceEEEEeCCCccEEEeCCCCc
Q psy17657 309 YDWKVECVGDDIAWMKFDEEGNLRAINPESG 339 (652)
Q Consensus 309 pGwkve~VGDDIAWmr~~~dGrl~AINPE~G 339 (652)
+||+. +.+.+|+.|-||-..+
T Consensus 14 ~gWe~----------~~~~~G~~Yyinh~t~ 34 (46)
T 2l4j_A 14 EGWEQ----------AITPEGEIYYINHKNK 34 (46)
T ss_dssp TTCEE----------EECTTSCEEEEETTTT
T ss_pred cCcee----------EECCCCCEEEEECCCC
Confidence 79953 4567999999997665
No 264
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=28.93 E-value=12 Score=34.61 Aligned_cols=34 Identities=21% Similarity=0.252 Sum_probs=21.3
Q ss_pred EEEEEcCCcccchhhcc--cCCCCCCceEEEeecce
Q psy17657 287 FVAAAFPSACGKTNLAM--LMPTLYDWKVECVGDDI 320 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAM--l~p~~pGwkve~VGDDI 320 (652)
-|+-..++++|||+|+. +.-.....++-+|+.|.
T Consensus 40 ~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~ 75 (226)
T 2hf9_A 40 AFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDV 75 (226)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEET
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCC
Confidence 34444569999999964 22222346788888763
No 265
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=28.84 E-value=19 Score=37.56 Aligned_cols=34 Identities=21% Similarity=0.241 Sum_probs=21.1
Q ss_pred EEEEEcCCcccchhhcccC----CCCCCceEEEeecce
Q psy17657 287 FVAAAFPSACGKTNLAMLM----PTLYDWKVECVGDDI 320 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~----p~~pGwkve~VGDDI 320 (652)
.++-..|||||||+|.-+. ++..|-++-+++|.+
T Consensus 125 ~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI 162 (356)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH
Confidence 4455589999999985321 222355666666654
No 266
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=28.69 E-value=14 Score=36.63 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=11.8
Q ss_pred cCCcccchhhcccC
Q psy17657 292 FPSACGKTNLAMLM 305 (652)
Q Consensus 292 FPSaCGKTnlAMl~ 305 (652)
.|+|||||.||-..
T Consensus 62 G~~GtGKT~la~~i 75 (338)
T 3pfi_A 62 GPAGLGKTTLANII 75 (338)
T ss_dssp CSTTSSHHHHHHHH
T ss_pred CcCCCCHHHHHHHH
Confidence 68999999998753
No 267
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=28.68 E-value=14 Score=36.65 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=15.4
Q ss_pred EEEEEEEcCCcccchhhccc
Q psy17657 285 KMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl 304 (652)
+..+.-..|.|||||++||.
T Consensus 58 kn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHH
Confidence 33456668999999999874
No 268
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=28.62 E-value=23 Score=37.57 Aligned_cols=22 Identities=18% Similarity=0.262 Sum_probs=17.4
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+|+..-|+-..|+|||||++|-
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHH
Confidence 4666566667899999999985
No 269
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=28.40 E-value=28 Score=31.54 Aligned_cols=19 Identities=32% Similarity=0.195 Sum_probs=14.9
Q ss_pred EEEEEEEcCCcccchhhcc
Q psy17657 285 KMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAM 303 (652)
..-++--.|++||||+|.-
T Consensus 29 ~~kv~lvG~~g~GKSTLl~ 47 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLS 47 (191)
T ss_dssp EEEEEEEECTTSSHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHH
Confidence 3456777999999999964
No 270
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=28.27 E-value=17 Score=42.40 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=23.1
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDW 311 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGw 311 (652)
+|+.-|.|-..| .|+|||||.||-..-.--|.
T Consensus 233 ~g~~~p~GILL~----GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 233 IGVKPPRGILLY----GPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCCCCCEEEEE----CCTTSCHHHHHHHHHTTTTC
T ss_pred cCCCCCCeEEEE----CCCCCCHHHHHHHHHHHhCC
Confidence 577888775555 89999999998755433343
No 271
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=28.24 E-value=24 Score=31.89 Aligned_cols=22 Identities=32% Similarity=0.238 Sum_probs=15.2
Q ss_pred CCCCcEEEEEEEcCCcccchhhcc
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
-+.|.+ |+-..||+||||+|.-
T Consensus 23 ~~~~~~--v~lvG~~g~GKSTLl~ 44 (210)
T 1pui_A 23 SDTGIE--VAFAGRSNAGKSSALN 44 (210)
T ss_dssp CSCSEE--EEEEECTTSSHHHHHT
T ss_pred CCCCcE--EEEECCCCCCHHHHHH
Confidence 344544 4445799999999854
No 272
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=28.20 E-value=21 Score=31.95 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.1
Q ss_pred EEEEcCCcccchhhcc
Q psy17657 288 VAAAFPSACGKTNLAM 303 (652)
Q Consensus 288 vaaAFPSaCGKTnlAM 303 (652)
|+-..+|+||||+|.-
T Consensus 5 v~ivG~~gvGKStLl~ 20 (184)
T 2zej_A 5 LMIVGNTGSGKTTLLQ 20 (184)
T ss_dssp EEEESCTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 5666899999999864
No 273
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=28.20 E-value=19 Score=38.79 Aligned_cols=22 Identities=32% Similarity=0.356 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-|. .|||||||+|+-+
T Consensus 136 ~~Ge~v~Iv--GpnGsGKSTLlr~ 157 (460)
T 2npi_A 136 FEGPRVVIV--GGSQTGKTSLSRT 157 (460)
T ss_dssp SSCCCEEEE--ESTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 367766665 7999999999754
No 274
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=27.95 E-value=16 Score=38.41 Aligned_cols=21 Identities=24% Similarity=0.191 Sum_probs=15.9
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-+ ..|+|||||.||+-
T Consensus 122 ~gsviLI--~GpPGsGKTtLAlq 142 (331)
T 2vhj_A 122 ASGMVIV--TGKGNSGKTPLVHA 142 (331)
T ss_dssp ESEEEEE--ECSCSSSHHHHHHH
T ss_pred CCcEEEE--EcCCCCCHHHHHHH
Confidence 3555444 58999999999985
No 275
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=27.78 E-value=21 Score=33.57 Aligned_cols=33 Identities=30% Similarity=0.348 Sum_probs=20.9
Q ss_pred eEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEee
Q psy17657 274 RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVG 317 (652)
Q Consensus 274 lIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VG 317 (652)
-|+.|++++| |+|||++|..... .-|.||=.|-
T Consensus 3 ~vi~v~s~kg-----------GvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 3 RIIVVTSGKG-----------GVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EEEEEECSST-----------TSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCC-----------CCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4556666655 8999999874321 1466665554
No 276
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=27.74 E-value=23 Score=37.49 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=16.5
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+..-|+ .|+|+|||.||+.
T Consensus 202 ~G~liiI~--G~pG~GKTtl~l~ 222 (454)
T 2r6a_A 202 RSDLIIVA--ARPSVGKTAFALN 222 (454)
T ss_dssp TTCEEEEE--CCTTSCHHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 47665555 8999999999884
No 277
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=27.74 E-value=53 Score=27.97 Aligned_cols=17 Identities=29% Similarity=0.198 Sum_probs=13.1
Q ss_pred EEEEEEcCCcccchhhc
Q psy17657 286 MFVAAAFPSACGKTNLA 302 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlA 302 (652)
.-|+-..++++|||+|.
T Consensus 4 ~~i~v~G~~~~GKssli 20 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLL 20 (170)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred eEEEEECcCCCCHHHHH
Confidence 34566679999999984
No 278
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=27.73 E-value=20 Score=36.35 Aligned_cols=16 Identities=38% Similarity=0.401 Sum_probs=13.1
Q ss_pred EcCCcccchhhcccCC
Q psy17657 291 AFPSACGKTNLAMLMP 306 (652)
Q Consensus 291 AFPSaCGKTnlAMl~p 306 (652)
..|+|||||.+|-...
T Consensus 57 ~GppGtGKT~la~~ia 72 (363)
T 3hws_A 57 IGPTGSGKTLLAETLA 72 (363)
T ss_dssp ECCTTSSHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHH
Confidence 4899999999987543
No 279
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=27.68 E-value=22 Score=33.59 Aligned_cols=17 Identities=24% Similarity=0.249 Sum_probs=13.2
Q ss_pred EEEEcCCcccchhhccc
Q psy17657 288 VAAAFPSACGKTNLAML 304 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl 304 (652)
|+-..|+|||||++|=+
T Consensus 3 I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 3 ILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEECCTTSCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 44557999999998754
No 280
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=27.66 E-value=15 Score=39.67 Aligned_cols=36 Identities=22% Similarity=0.211 Sum_probs=25.6
Q ss_pred EEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 285 KMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
.+.|+-+.|+|+|||+|+-..-. -.|.||-+|+-|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 45555668999999998652211 1599999999885
No 281
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=27.55 E-value=26 Score=30.67 Aligned_cols=22 Identities=27% Similarity=0.318 Sum_probs=17.3
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
|+.+..-|+-..++++|||+|.
T Consensus 2 ~~~~~~ki~~~G~~~~GKSsli 23 (181)
T 3t5g_A 2 PQSKSRKIAILGYRSVGKSSLT 23 (181)
T ss_dssp CCEEEEEEEEEESTTSSHHHHH
T ss_pred CCCceEEEEEECcCCCCHHHHH
Confidence 3445667888899999999994
No 282
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=27.42 E-value=19 Score=39.98 Aligned_cols=18 Identities=6% Similarity=0.126 Sum_probs=14.1
Q ss_pred EcCCcccchhhcccCCCC
Q psy17657 291 AFPSACGKTNLAMLMPTL 308 (652)
Q Consensus 291 AFPSaCGKTnlAMl~p~~ 308 (652)
-.|+|||||.||-.....
T Consensus 333 ~GppGtGKT~LAr~la~~ 350 (595)
T 3f9v_A 333 IGDPGTAKSQMLQFISRV 350 (595)
T ss_dssp EESSCCTHHHHHHSSSTT
T ss_pred ECCCchHHHHHHHHHHHh
Confidence 359999999999866543
No 283
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=27.34 E-value=19 Score=38.09 Aligned_cols=13 Identities=31% Similarity=0.115 Sum_probs=11.4
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||..
T Consensus 137 Gp~G~GKTtLa~a 149 (440)
T 2z4s_A 137 GGVGLGKTHLLQS 149 (440)
T ss_dssp CSSSSSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 6999999999864
No 284
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=27.33 E-value=24 Score=38.60 Aligned_cols=21 Identities=24% Similarity=0.298 Sum_probs=16.7
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..-+. .|||||||+|.-
T Consensus 45 ~~Ge~~~Lv--G~NGaGKSTLlk 65 (538)
T 1yqt_A 45 KEGMVVGIV--GPNGTGKSTAVK 65 (538)
T ss_dssp CTTSEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 458777666 899999999864
No 285
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=27.17 E-value=30 Score=30.32 Aligned_cols=18 Identities=17% Similarity=0.067 Sum_probs=14.6
Q ss_pred EEEEEEcCCcccchhhcc
Q psy17657 286 MFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAM 303 (652)
.-|+-..++++|||+|.-
T Consensus 4 ~~v~lvG~~gvGKStL~~ 21 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFN 21 (165)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 456777899999999854
No 286
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=26.99 E-value=18 Score=39.60 Aligned_cols=24 Identities=42% Similarity=0.563 Sum_probs=17.1
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++.-|.| +.--.|+|||||.||-.
T Consensus 60 g~~ip~G----vLL~GppGtGKTtLara 83 (499)
T 2dhr_A 60 GARIPKG----VLLVGPPGVGKTHLARA 83 (499)
T ss_dssp SCCCCSE----EEEECSSSSSHHHHHHH
T ss_pred cCCCCce----EEEECCCCCCHHHHHHH
Confidence 4455666 33448999999999754
No 287
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=26.91 E-value=24 Score=42.92 Aligned_cols=26 Identities=23% Similarity=0.469 Sum_probs=21.1
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=|.|++.-|. .|||||||+|+-+.
T Consensus 439 l~i~~G~~vaiv--G~sGsGKSTll~ll 464 (1321)
T 4f4c_A 439 LRVNAGQTVALV--GSSGCGKSTIISLL 464 (1321)
T ss_dssp EEECTTCEEEEE--ECSSSCHHHHHHHH
T ss_pred EeecCCcEEEEE--ecCCCcHHHHHHHh
Confidence 445779988888 79999999998754
No 288
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=26.83 E-value=35 Score=30.72 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.4
Q ss_pred CCcEEEEEEEcCCcccchhhc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlA 302 (652)
.-+..-|+-..+++||||+|.
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~ 37 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALV 37 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHH
T ss_pred CCCeeEEEEECCCCCCHHHHH
Confidence 456677888899999999996
No 289
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=26.75 E-value=22 Score=39.13 Aligned_cols=21 Identities=33% Similarity=0.415 Sum_probs=16.5
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.|+..=+. .|||||||+|+-
T Consensus 292 ~~Gei~~i~--G~nGsGKSTLl~ 312 (538)
T 3ozx_A 292 KEGEIIGIL--GPNGIGKTTFAR 312 (538)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHH
Confidence 468766555 899999999864
No 290
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=26.66 E-value=23 Score=32.88 Aligned_cols=19 Identities=21% Similarity=0.137 Sum_probs=14.2
Q ss_pred EEEEEcCCcccchhhcccC
Q psy17657 287 FVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl~ 305 (652)
.|+-..|+|||||++|-+.
T Consensus 6 ~I~l~G~~GsGKsT~a~~L 24 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNL 24 (220)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3445578999999998643
No 291
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=26.47 E-value=25 Score=33.34 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=11.9
Q ss_pred EEEEEcCCcccchhh
Q psy17657 287 FVAAAFPSACGKTNL 301 (652)
Q Consensus 287 yvaaAFPSaCGKTnl 301 (652)
.+....|+|||||.+
T Consensus 78 ~~~i~g~TGsGKTt~ 92 (235)
T 3llm_A 78 VVIIRGATGCGKTTQ 92 (235)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEeCCCCCcHHh
Confidence 456668999999974
No 292
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=26.36 E-value=31 Score=29.90 Aligned_cols=21 Identities=19% Similarity=0.085 Sum_probs=16.1
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
.+..-|+-..+++||||+|.-
T Consensus 5 ~~~~~i~v~G~~~~GKSsli~ 25 (177)
T 1wms_A 5 SSLFKVILLGDGGVGKSSLMN 25 (177)
T ss_dssp EEEEEEEEECCTTSSHHHHHH
T ss_pred cceeEEEEECCCCCCHHHHHH
Confidence 345567777899999999843
No 293
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=26.16 E-value=16 Score=37.40 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=11.6
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||-.
T Consensus 91 GppGtGKT~la~a 103 (355)
T 2qp9_X 91 GPPGTGKSYLAKA 103 (355)
T ss_dssp CSTTSCHHHHHHH
T ss_pred CCCCCcHHHHHHH
Confidence 8999999999864
No 294
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=26.10 E-value=16 Score=35.54 Aligned_cols=13 Identities=46% Similarity=0.552 Sum_probs=11.4
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||-.
T Consensus 45 G~~GtGKT~la~~ 57 (324)
T 1hqc_A 45 GPPGLGKTTLAHV 57 (324)
T ss_dssp CCTTCCCHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 6899999999864
No 295
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=26.10 E-value=21 Score=36.53 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=13.9
Q ss_pred CCcEEEEEEEcCCcccchhhcc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAM 303 (652)
.|+..-|+ .|||||||+|.=
T Consensus 170 ~g~~v~i~--G~~GsGKTTll~ 189 (330)
T 2pt7_A 170 IGKNVIVC--GGTGSGKTTYIK 189 (330)
T ss_dssp HTCCEEEE--ESTTSCHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHH
Confidence 35544444 799999999753
No 296
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=26.02 E-value=16 Score=37.09 Aligned_cols=14 Identities=36% Similarity=0.465 Sum_probs=11.8
Q ss_pred cCCcccchhhcccC
Q psy17657 292 FPSACGKTNLAMLM 305 (652)
Q Consensus 292 FPSaCGKTnlAMl~ 305 (652)
.|+|||||.||-..
T Consensus 79 Gp~GtGKT~la~~l 92 (376)
T 1um8_A 79 GPTGSGKTLMAQTL 92 (376)
T ss_dssp CCTTSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 69999999998643
No 297
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=25.91 E-value=32 Score=28.97 Aligned_cols=17 Identities=18% Similarity=0.255 Sum_probs=13.0
Q ss_pred EEEEEcCCcccchhhcc
Q psy17657 287 FVAAAFPSACGKTNLAM 303 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAM 303 (652)
-|+-..+++||||+|.-
T Consensus 5 ~i~v~G~~~~GKssl~~ 21 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTI 21 (166)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35566789999999954
No 298
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=25.79 E-value=25 Score=33.78 Aligned_cols=42 Identities=10% Similarity=0.297 Sum_probs=27.2
Q ss_pred hHHHhhccChHHHHHHHHHHHHHHhhh--h----CCCCCHHHHHHHHH
Q psy17657 591 NLKELFYIDKDFWEQELNAIEKYFNDQ--V----GSDLPPAIHAEISG 632 (652)
Q Consensus 591 ~~~~l~~v~~~~W~~E~~~i~~~~~~~--~----g~~lP~~i~~~l~~ 632 (652)
|-++.+.-+-+.+.++...+.+||.++ + ++.-+.++++++.+
T Consensus 192 d~~e~i~~Rl~~~~~~~~~l~~~y~~~~~~~~id~~~~~~~v~~~i~~ 239 (243)
T 3tlx_A 192 DNEDVLKKRLTVFKSETSPLISYYKNKNLLINLDATQPANDLEKKISQ 239 (243)
T ss_dssp GSHHHHHHHHHHHHHHTTHHHHHHHHTTCEEEEETTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCcEEEEECCCCHHHHHHHHHH
Confidence 445666667778888888899999742 1 33445565555443
No 299
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=25.63 E-value=28 Score=34.80 Aligned_cols=19 Identities=37% Similarity=0.284 Sum_probs=13.3
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
|+...+. .|||||||+|.-
T Consensus 169 geiv~l~--G~sG~GKSTll~ 187 (301)
T 1u0l_A 169 GKISTMA--GLSGVGKSSLLN 187 (301)
T ss_dssp SSEEEEE--CSTTSSHHHHHH
T ss_pred CCeEEEE--CCCCCcHHHHHH
Confidence 4544444 699999998753
No 300
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=25.62 E-value=27 Score=35.22 Aligned_cols=20 Identities=20% Similarity=0.194 Sum_probs=15.6
Q ss_pred CcEEEEEEEcCCcccchhhccc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAMl 304 (652)
++-.|+. .|+|||||.||..
T Consensus 152 ~~~lll~--G~~GtGKT~La~a 171 (308)
T 2qgz_A 152 QKGLYLY--GDMGIGKSYLLAA 171 (308)
T ss_dssp CCEEEEE--CSTTSSHHHHHHH
T ss_pred CceEEEE--CCCCCCHHHHHHH
Confidence 4566666 7999999999853
No 301
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=25.62 E-value=18 Score=33.82 Aligned_cols=18 Identities=11% Similarity=0.004 Sum_probs=13.6
Q ss_pred EEEEEcCCcccchhhccc
Q psy17657 287 FVAAAFPSACGKTNLAML 304 (652)
Q Consensus 287 yvaaAFPSaCGKTnlAMl 304 (652)
.|+--.|+|||||++|=+
T Consensus 7 ~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp EEEEEECTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 344457899999998764
No 302
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=25.49 E-value=17 Score=34.78 Aligned_cols=37 Identities=27% Similarity=0.326 Sum_probs=24.0
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecc
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDD 319 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDD 319 (652)
.|.++.|++++| |+|||++|..... ..|.||=.|-=|
T Consensus 5 ~~~vI~v~s~kG-----------GvGKTt~a~~LA~~la~~g~~VlliD~D 44 (257)
T 1wcv_1 5 KVRRIALANQKG-----------GVGKTTTAINLAAYLARLGKRVLLVDLD 44 (257)
T ss_dssp CCCEEEECCSSC-----------CHHHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEEeCCC-----------CchHHHHHHHHHHHHHHCCCCEEEEECC
Confidence 455666666665 8999998875432 247777666433
No 303
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=25.48 E-value=41 Score=29.59 Aligned_cols=20 Identities=20% Similarity=0.115 Sum_probs=15.7
Q ss_pred cEEEEEEEcCCcccchhhcc
Q psy17657 284 KKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAM 303 (652)
+..-|+-..+++||||+|.-
T Consensus 6 ~~~~i~lvG~~gvGKStL~~ 25 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFN 25 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45567777899999999854
No 304
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=25.38 E-value=24 Score=36.20 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=25.8
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC-C--CCceEEEeecc
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT-L--YDWKVECVGDD 319 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~-~--pGwkve~VGDD 319 (652)
.|.++.|++++| |+|||++|..... + -|.||=.|-=|
T Consensus 142 ~~kvIav~s~KG-----------GvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 142 KSSVVIFTSPCG-----------GVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp SCEEEEEECSST-----------TSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred CceEEEEECCCC-----------CChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 677888888777 8999998874332 1 37777666544
No 305
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=25.24 E-value=18 Score=37.16 Aligned_cols=34 Identities=29% Similarity=0.348 Sum_probs=24.8
Q ss_pred eeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEee
Q psy17657 273 NRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVG 317 (652)
Q Consensus 273 MlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VG 317 (652)
|-|+.|+|.+| |+|||++|..... ..|.||=.|=
T Consensus 1 MkvIav~s~KG-----------GvGKTT~a~nLA~~LA~~G~rVLlID 37 (361)
T 3pg5_A 1 MRTISFFNNKG-----------GVGKTTLSTNVAHYFALQGKRVLYVD 37 (361)
T ss_dssp CEEEEBCCSSC-----------CHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEEcCCC-----------CCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 77888888887 8999998874322 2677776664
No 306
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=25.16 E-value=17 Score=37.06 Aligned_cols=14 Identities=29% Similarity=0.358 Sum_probs=11.9
Q ss_pred cCCcccchhhcccC
Q psy17657 292 FPSACGKTNLAMLM 305 (652)
Q Consensus 292 FPSaCGKTnlAMl~ 305 (652)
.|+|||||.||-..
T Consensus 124 GppGtGKT~la~ai 137 (357)
T 3d8b_A 124 GPPGTGKTLIGKCI 137 (357)
T ss_dssp SSTTSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 89999999998643
No 307
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=25.15 E-value=24 Score=33.89 Aligned_cols=13 Identities=38% Similarity=0.485 Sum_probs=11.4
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||-.
T Consensus 57 G~~GtGKT~la~~ 69 (310)
T 1ofh_A 57 GPTGVGKTEIARR 69 (310)
T ss_dssp CCTTSSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 7999999999864
No 308
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=24.88 E-value=20 Score=39.04 Aligned_cols=24 Identities=38% Similarity=0.580 Sum_probs=16.8
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhhccc
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|++-|.| ..+. .|+|||||.||-.
T Consensus 45 g~~~p~g--vLL~--GppGtGKT~Lara 68 (476)
T 2ce7_A 45 GARMPKG--ILLV--GPPGTGKTLLARA 68 (476)
T ss_dssp TCCCCSE--EEEE--CCTTSSHHHHHHH
T ss_pred CCCCCCe--EEEE--CCCCCCHHHHHHH
Confidence 4555666 3333 7999999999853
No 309
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=24.87 E-value=24 Score=32.80 Aligned_cols=24 Identities=13% Similarity=0.109 Sum_probs=15.9
Q ss_pred HHhhccChHHHHHHHHHHHHHHhh
Q psy17657 593 KELFYIDKDFWEQELNAIEKYFND 616 (652)
Q Consensus 593 ~~l~~v~~~~W~~E~~~i~~~~~~ 616 (652)
++.+.-+.+.+.++...+.+||.+
T Consensus 161 ~~~~~~rl~~y~~~~~~l~~~~~~ 184 (214)
T 1e4v_A 161 EETVRKRLVEYHQMTAPLIGYYSK 184 (214)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444456678888888888863
No 310
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=24.71 E-value=35 Score=36.85 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=17.1
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+.|+..-++-..|||||||+|.
T Consensus 38 ~~Gei~~vaLvG~nGaGKSTLl 59 (427)
T 2qag_B 38 SQGFCFNILCVGETGLGKSTLM 59 (427)
T ss_dssp C-CCEEEEEEECSTTSSSHHHH
T ss_pred cCCCeeEEEEECCCCCCHHHHH
Confidence 4687755777799999999985
No 311
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=24.68 E-value=17 Score=38.34 Aligned_cols=15 Identities=47% Similarity=0.616 Sum_probs=12.6
Q ss_pred EcCCcccchhhcccC
Q psy17657 291 AFPSACGKTNLAMLM 305 (652)
Q Consensus 291 AFPSaCGKTnlAMl~ 305 (652)
..|+|||||.||...
T Consensus 69 ~GppGtGKT~la~al 83 (456)
T 2c9o_A 69 AGPPGTGKTALALAI 83 (456)
T ss_dssp ECCTTSSHHHHHHHH
T ss_pred ECCCcCCHHHHHHHH
Confidence 489999999998754
No 312
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=24.62 E-value=25 Score=34.27 Aligned_cols=27 Identities=26% Similarity=0.284 Sum_probs=19.3
Q ss_pred ceeEeeeeCCCCcEEEEEEEcCCcccchhhcccCCCCCCc
Q psy17657 272 NNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDW 311 (652)
Q Consensus 272 HMlIlgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~~pGw 311 (652)
||.-+|+|+. .|||||+.|=+.-. -|+
T Consensus 8 ~~~~iglTGg------------igsGKStv~~~l~~-~g~ 34 (210)
T 4i1u_A 8 HMYAIGLTGG------------IGSGKTTVADLFAA-RGA 34 (210)
T ss_dssp SCCEEEEECC------------TTSCHHHHHHHHHH-TTC
T ss_pred ceeEEEEECC------------CCCCHHHHHHHHHH-CCC
Confidence 8999999984 67999988654332 354
No 313
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=24.39 E-value=24 Score=36.95 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
|.|+.+-|+ -|+|||||.||+-
T Consensus 72 ~~G~li~I~--G~pGsGKTtlal~ 93 (366)
T 1xp8_A 72 PRGRITEIY--GPESGGKTTLALA 93 (366)
T ss_dssp ETTSEEEEE--ESTTSSHHHHHHH
T ss_pred cCCcEEEEE--cCCCCChHHHHHH
Confidence 458887775 5899999999873
No 314
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=24.37 E-value=18 Score=35.65 Aligned_cols=13 Identities=15% Similarity=0.046 Sum_probs=11.1
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||-.
T Consensus 52 G~~GtGKT~la~~ 64 (350)
T 1g8p_A 52 GDRGTGKSTAVRA 64 (350)
T ss_dssp CCGGGCTTHHHHH
T ss_pred CCCCccHHHHHHH
Confidence 6899999999864
No 315
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=24.27 E-value=22 Score=38.39 Aligned_cols=22 Identities=18% Similarity=0.110 Sum_probs=17.6
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+.+-|+ .|||||||+|+..
T Consensus 279 ~~G~i~~i~--G~~GsGKSTLl~~ 300 (525)
T 1tf7_A 279 FKDSIILAT--GATGTGKTLLVSR 300 (525)
T ss_dssp ESSCEEEEE--ECTTSSHHHHHHH
T ss_pred CCCcEEEEE--eCCCCCHHHHHHH
Confidence 457776666 7999999999875
No 316
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=24.19 E-value=25 Score=41.51 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=20.9
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+-|+=|.++.+=|| .+|||||++||+
T Consensus 17 i~~~ip~~~l~v~t--G~SGSGKSsLaf 42 (916)
T 3pih_A 17 ITVRIPKNRLVVIT--GVSGSGKSSLAM 42 (916)
T ss_dssp BCCEEETTSEEEEE--ESTTSSSHHHHT
T ss_pred ceeccCCCcEEEEE--CCCCCcHHHHHH
Confidence 34556878777776 899999999998
No 317
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=24.14 E-value=29 Score=32.27 Aligned_cols=19 Identities=32% Similarity=0.377 Sum_probs=15.2
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
|+...++ .|-+||||++++
T Consensus 3 g~i~vi~--G~~gsGKTT~ll 21 (184)
T 2orw_A 3 GKLTVIT--GPMYSGKTTELL 21 (184)
T ss_dssp CCEEEEE--ESTTSSHHHHHH
T ss_pred cEEEEEE--CCCCCCHHHHHH
Confidence 6667776 688999999974
No 318
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=24.11 E-value=23 Score=34.73 Aligned_cols=31 Identities=29% Similarity=0.425 Sum_probs=21.5
Q ss_pred EeeeeCCCCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEe
Q psy17657 275 ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECV 316 (652)
Q Consensus 275 Ilgvt~P~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~V 316 (652)
|+.|++.+| |+|||++|...-. .-|.||-.|
T Consensus 6 vI~v~s~KG-----------GvGKTT~a~nLA~~La~~G~~Vlli 39 (286)
T 2xj4_A 6 VIVVGNEKG-----------GAGKSTIAVHLVTALLYGGAKVAVI 39 (286)
T ss_dssp EEEECCSSS-----------CTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCC-----------CCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 667777666 8999999875432 257777655
No 319
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=23.91 E-value=37 Score=29.29 Aligned_cols=21 Identities=29% Similarity=0.156 Sum_probs=15.7
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
.+..-|+-..+++||||+|.-
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~ 26 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMH 26 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHH
Confidence 345567777899999999963
No 320
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=23.90 E-value=1.9e+02 Score=26.12 Aligned_cols=77 Identities=13% Similarity=0.051 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEc-CCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCCCCc
Q psy17657 40 KLLKFITESANLCKPKDIHICD-GTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDV 116 (652)
Q Consensus 40 ~v~~~V~e~a~L~~P~~I~icd-GS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~~da 116 (652)
...++++++.++++|..++++. -+.+..+.+.+.+.+.|-...+....-+-.........-+...-.||++-.+.+-
T Consensus 120 ~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~i~~~~~~~~ 197 (204)
T 3e05_A 120 MLEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGYMVEVACVNVAKTKGLTEYKMFESHNPVYIITAWKSDE 197 (204)
T ss_dssp CHHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTCEEEEEEEEEEEEC---CCCBCEECCCEEEEEEECC--
T ss_pred CHHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCCceeEEEEEeecceEccceEEeccCCCeEEEEEEcCCC
Confidence 5779999999999999888877 5667888899999999842222110001111112233444566677777666543
No 321
>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*
Probab=23.87 E-value=74 Score=32.16 Aligned_cols=79 Identities=18% Similarity=0.231 Sum_probs=41.4
Q ss_pred EEEEEEcCCcccchhhcccCCCCCCceEEEeec-------ceEEEEeCCCccEEEeCCCCceeeecCCCCCCCCHHHHhh
Q psy17657 286 MFVAAAFPSACGKTNLAMLMPTLYDWKVECVGD-------DIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQT 358 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~p~~pGwkve~VGD-------DIAWmr~~~dGrl~AINPE~GfFGVapGtn~~tnP~am~~ 358 (652)
+..+|..|+.-.+.=++ +...+|. ||| |++||+|||| .+--++=+-|.++..++=-.-++
T Consensus 14 ~~y~G~~P~~~~~~~~~---------~a~~iG~~gw~~~~~la---f~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t 80 (236)
T 1tl2_A 14 KFYQGTYPQNKNDNWLA---------RATLIGKGGWSNFKFLF---LSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAK 80 (236)
T ss_dssp EEEEESCCCSTTCCHHH---------HSEEEESSSCTTCSEEE---ECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred cEEecCCCCCcccchhh---------hccccCccccccceeEE---ECCCccEEEE-eCCeEEEECCCCCCccccccccc
Confidence 45666777753322111 3355554 666 5679999999 55556666655554444222211
Q ss_pred ccCC---ceeeeeeecCCCccc
Q psy17657 359 IFHN---TMFTNVGTTSDDGVY 377 (652)
Q Consensus 359 l~kn---tIFTNVa~t~dG~vw 377 (652)
.-.+ .-|.=+..+++|.+|
T Consensus 81 ~IG~~Gw~~F~a~~fD~~G~LY 102 (236)
T 1tl2_A 81 KIGNGGWNQFQFLFFDPNGYLY 102 (236)
T ss_dssp EEECSCGGGCSEEEECTTSCEE
T ss_pred EecccccccceEEEECCCCCEE
Confidence 1111 125555555666555
No 322
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=23.81 E-value=31 Score=33.13 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.7
Q ss_pred EEEEEEcCCcccchhhccc
Q psy17657 286 MFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl 304 (652)
.+|+--.|+|||||+++-+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 5777779999999998754
No 323
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=23.76 E-value=28 Score=38.97 Aligned_cols=30 Identities=20% Similarity=0.234 Sum_probs=20.6
Q ss_pred eeeCCCCcEEEEEEEcCCcccchhhcccCC
Q psy17657 277 GVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306 (652)
Q Consensus 277 gvt~P~G~~~yvaaAFPSaCGKTnlAMl~p 306 (652)
|+.+|+.-...+.-..|+|||||.||-...
T Consensus 480 g~~~~~~p~~~~ll~G~~GtGKT~la~~la 509 (758)
T 1r6b_X 480 GLGHEHKPVGSFLFAGPTGVGKTEVTVQLS 509 (758)
T ss_dssp TCSCTTSCSEEEEEECSTTSSHHHHHHHHH
T ss_pred ccCCCCCCceEEEEECCCCCcHHHHHHHHH
Confidence 455665444455556899999999986543
No 324
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=23.63 E-value=33 Score=34.21 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=16.2
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|+.+ |....|.|||||.+|+-
T Consensus 4 ~g~l~-I~~~~kgGvGKTt~a~~ 25 (228)
T 2r8r_A 4 RGRLK-VFLGAAPGVGKTYAMLQ 25 (228)
T ss_dssp CCCEE-EEEESSTTSSHHHHHHH
T ss_pred CceEE-EEEECCCCCcHHHHHHH
Confidence 46543 55669999999999653
No 325
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=23.46 E-value=28 Score=38.04 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=13.7
Q ss_pred EEEEcCCcccchhhcccC
Q psy17657 288 VAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~ 305 (652)
++-..|||||||.||-..
T Consensus 111 vll~Gp~GtGKTtlar~i 128 (543)
T 3m6a_A 111 LCLAGPPGVGKTSLAKSI 128 (543)
T ss_dssp EEEESSSSSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 334489999999998653
No 326
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=23.35 E-value=19 Score=35.35 Aligned_cols=13 Identities=31% Similarity=0.294 Sum_probs=11.0
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
-|+|||||.+|..
T Consensus 55 G~~G~GKT~la~~ 67 (324)
T 3u61_B 55 PSPGTGKTTVAKA 67 (324)
T ss_dssp SSTTSSHHHHHHH
T ss_pred CcCCCCHHHHHHH
Confidence 4799999999875
No 327
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=23.26 E-value=20 Score=38.53 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=25.7
Q ss_pred CCcEEEEEEEcCCcccchhhcccCCC---CCCceEEEeecce
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAMLMPT---LYDWKVECVGDDI 320 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl~p~---~pGwkve~VGDDI 320 (652)
.++..-++ .|+|||||+++...-. ..|.+|-.++-|+
T Consensus 97 ~~~vi~i~--G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLV--GLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEE--CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEE--CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 35555554 6899999988653211 2489999999886
No 328
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=23.24 E-value=40 Score=28.48 Aligned_cols=17 Identities=24% Similarity=0.210 Sum_probs=13.5
Q ss_pred EEEEEEcCCcccchhhc
Q psy17657 286 MFVAAAFPSACGKTNLA 302 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlA 302 (652)
.-|+-..++++|||+|.
T Consensus 4 ~~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 44666789999999994
No 329
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=23.20 E-value=28 Score=32.12 Aligned_cols=18 Identities=33% Similarity=0.471 Sum_probs=13.9
Q ss_pred EEEEcCCcccchhhcccC
Q psy17657 288 VAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 288 vaaAFPSaCGKTnlAMl~ 305 (652)
|+-..|+|||||++|-+.
T Consensus 6 i~i~G~~gsGkst~~~~l 23 (219)
T 2h92_A 6 IALDGPAAAGKSTIAKRV 23 (219)
T ss_dssp EEEECCTTSSHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHH
Confidence 445589999999998543
No 330
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=22.88 E-value=36 Score=34.24 Aligned_cols=39 Identities=13% Similarity=0.144 Sum_probs=22.9
Q ss_pred EEEEEEEcCCcccchhhcc-cCCCCCCceEEEeecceEEE
Q psy17657 285 KMFVAAAFPSACGKTNLAM-LMPTLYDWKVECVGDDIAWM 323 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAM-l~p~~pGwkve~VGDDIAWm 323 (652)
...++-..|||||||+|.= |....+|.|+-+|--|.-.+
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i 43 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEV 43 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCccc
Confidence 3344555799999999852 22223566655555454444
No 331
>3ugs_B Undecaprenyl pyrophosphate synthase; niaid, csgid, structural genomics, center for structural GEN infectious diseases; HET: FFT; 2.46A {Campylobacter jejuni} SCOP: c.101.1.0
Probab=22.87 E-value=1e+02 Score=30.81 Aligned_cols=48 Identities=25% Similarity=0.304 Sum_probs=42.5
Q ss_pred cCCcCCCCHHHHHHHHHHHhhcCCC-----eEEEEcCCHHHHHHHHHHHHhcC
Q psy17657 31 HGDLSSVSPKLLKFITESANLCKPK-----DIHICDGTEEENKAILKKMVDTN 78 (652)
Q Consensus 31 ~g~~~~l~~~v~~~V~e~a~L~~P~-----~I~icdGS~eE~~~l~~~~~~~G 78 (652)
-||++.||+++++-++++.+.++-. .|-++=|+..|.-.-++.++++|
T Consensus 99 iGd~~~Lp~~~~~~i~~ae~~T~~n~~~~lnia~~YggR~EI~~A~~~iv~~g 151 (225)
T 3ugs_B 99 IGDLSRLEDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKK 151 (225)
T ss_dssp ESCGGGSCHHHHHHHHHHHHHHTTCCSEEEEEEEEECHHHHHHHHHHHHHHTT
T ss_pred EeChHhCCHHHHHHHHHHHHHhcCCCCcEEEEeeCCCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999988766 35566799999999999999998
No 332
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=22.81 E-value=28 Score=32.95 Aligned_cols=20 Identities=20% Similarity=0.140 Sum_probs=15.0
Q ss_pred EEEEEEcCCcccchhhcccC
Q psy17657 286 MFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAMl~ 305 (652)
.+|+-..|+|||||++|-+.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~L 36 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKL 36 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 34555678999999998653
No 333
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=22.71 E-value=24 Score=34.66 Aligned_cols=13 Identities=31% Similarity=0.399 Sum_probs=11.0
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||-.
T Consensus 65 G~~G~GKT~la~~ 77 (353)
T 1sxj_D 65 GPPGTGKTSTILA 77 (353)
T ss_dssp CSTTSSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 6888999999864
No 334
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=22.61 E-value=36 Score=37.18 Aligned_cols=19 Identities=21% Similarity=0.076 Sum_probs=13.6
Q ss_pred CCcEEEEEEEcCCcccchhhc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlA 302 (652)
.|+. ++-..|+|||||+|.
T Consensus 259 ~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp TTCC--EEEEESTTSSHHHHH
T ss_pred CCCE--EEEECCCCCCHHHHH
Confidence 3554 445579999999983
No 335
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=22.61 E-value=39 Score=30.53 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=14.1
Q ss_pred EEEEEEcCCcccchhhcc
Q psy17657 286 MFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAM 303 (652)
.-|+--.|++||||+|.-
T Consensus 6 ~kv~lvG~~g~GKSTLl~ 23 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLS 23 (199)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECcCCCCHHHHHH
Confidence 445666899999999954
No 336
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=22.58 E-value=29 Score=37.98 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=16.9
Q ss_pred CCCcEEEEEEEcCCcccchhhccc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+.|+..-+. .|+|||||+|+-+
T Consensus 310 ~~Ge~~~i~--G~NGsGKSTLlk~ 331 (538)
T 1yqt_A 310 KKGEVIGIV--GPNGIGKTTFVKM 331 (538)
T ss_dssp ETTCEEEEE--CCTTSSHHHHHHH
T ss_pred CCCCEEEEE--CCCCCCHHHHHHH
Confidence 468776555 8999999999653
No 337
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=22.57 E-value=39 Score=29.82 Aligned_cols=20 Identities=15% Similarity=0.235 Sum_probs=15.6
Q ss_pred cEEEEEEEcCCcccchhhcc
Q psy17657 284 KKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAM 303 (652)
+..-|+-..+++||||+|..
T Consensus 20 ~~~ki~vvG~~~~GKSsli~ 39 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTI 39 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHH
T ss_pred ceeEEEEECcCCCCHHHHHH
Confidence 34567777899999999965
No 338
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=22.49 E-value=36 Score=34.18 Aligned_cols=18 Identities=33% Similarity=0.453 Sum_probs=12.9
Q ss_pred CcEEEEEEEcCCcccchhhc
Q psy17657 283 GKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlA 302 (652)
|+..-+ ..|||||||+|.
T Consensus 165 G~i~~l--~G~sG~GKSTLl 182 (302)
T 2yv5_A 165 GFICIL--AGPSGVGKSSIL 182 (302)
T ss_dssp TCEEEE--ECSTTSSHHHHH
T ss_pred CcEEEE--ECCCCCCHHHHH
Confidence 554444 479999999974
No 339
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=22.44 E-value=41 Score=29.88 Aligned_cols=21 Identities=24% Similarity=0.189 Sum_probs=16.1
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
.+..-|+-..+++||||+|.-
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~ 38 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTY 38 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHH
Confidence 455667788899999999843
No 340
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=22.29 E-value=40 Score=37.01 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=18.1
Q ss_pred eeeCC-CCcEEEEEEEcCCcccchhhcc
Q psy17657 277 GVTNP-EGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 277 gvt~P-~G~~~yvaaAFPSaCGKTnlAM 303 (652)
++.-| +|+.+=+. .|||||||+|.=
T Consensus 18 ~l~~~~~Gei~gLi--GpNGaGKSTLlk 43 (538)
T 3ozx_A 18 GLPTPKNNTILGVL--GKNGVGKTTVLK 43 (538)
T ss_dssp CCCCCCTTEEEEEE--CCTTSSHHHHHH
T ss_pred CCCCCCCCCEEEEE--CCCCCcHHHHHH
Confidence 44445 48766666 899999999853
No 341
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=22.27 E-value=25 Score=36.24 Aligned_cols=24 Identities=13% Similarity=0.225 Sum_probs=18.5
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+.+..+.-.|+. .|.|||||.++-
T Consensus 40 i~~~~~~~lli~--GpPGTGKT~~v~ 63 (318)
T 3te6_A 40 LMSSQNKLFYIT--NADDSTKFQLVN 63 (318)
T ss_dssp HHTTCCCEEEEE--CCCSHHHHHHHH
T ss_pred hcCCCCCeEEEE--CCCCCCHHHHHH
Confidence 345566777887 899999998865
No 342
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=22.27 E-value=28 Score=36.79 Aligned_cols=20 Identities=30% Similarity=0.424 Sum_probs=15.1
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.| .+=| +.|+|||||+||+
T Consensus 27 ~~G-iteI--~G~pGsGKTtL~L 46 (333)
T 3io5_A 27 QSG-LLIL--AGPSKSFKSNFGL 46 (333)
T ss_dssp CSE-EEEE--EESSSSSHHHHHH
T ss_pred cCC-eEEE--ECCCCCCHHHHHH
Confidence 457 4444 4799999999987
No 343
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=22.25 E-value=32 Score=41.08 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=21.6
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+-|+=|.++.+=|+ .+||+||++||+
T Consensus 39 i~v~iP~~~lvv~t--G~SGSGKSSLaf 64 (993)
T 2ygr_A 39 VDLDLPRDALIVFT--GLSGSGKSSLAF 64 (993)
T ss_dssp EEEEEESSSEEEEE--ESTTSSHHHHHT
T ss_pred eeeeccCCCEEEEE--CCCCCcHHHHHH
Confidence 45667888777777 899999999998
No 344
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=22.17 E-value=34 Score=41.42 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=20.7
Q ss_pred eeCCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 278 VTNPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 278 vt~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
++=+.|++.-+. .|||||||+|+-+.
T Consensus 411 l~i~~G~~~~iv--G~sGsGKSTl~~ll 436 (1284)
T 3g5u_A 411 LKVKSGQTVALV--GNSGCGKSTTVQLM 436 (1284)
T ss_dssp EEECTTCEEEEE--CCSSSSHHHHHHHT
T ss_pred EEEcCCCEEEEE--CCCCCCHHHHHHHH
Confidence 444679888777 89999999997654
No 345
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=22.17 E-value=43 Score=28.52 Aligned_cols=18 Identities=28% Similarity=0.242 Sum_probs=14.3
Q ss_pred EEEEEEEcCCcccchhhc
Q psy17657 285 KMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlA 302 (652)
..-|+-..+++||||+|.
T Consensus 3 ~~~i~v~G~~~~GKssli 20 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 445667789999999985
No 346
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=22.16 E-value=40 Score=35.22 Aligned_cols=19 Identities=42% Similarity=0.462 Sum_probs=13.7
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
+.| ...+. .|+|||||||.
T Consensus 25 ~~g-~~~i~--G~nG~GKttll 43 (359)
T 2o5v_A 25 PEG-VTGIY--GENGAGKTNLL 43 (359)
T ss_dssp CSE-EEEEE--CCTTSSHHHHH
T ss_pred cCC-eEEEE--CCCCCChhHHH
Confidence 345 44444 89999999984
No 347
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.16 E-value=21 Score=38.16 Aligned_cols=14 Identities=43% Similarity=0.579 Sum_probs=11.9
Q ss_pred cCCcccchhhcccC
Q psy17657 292 FPSACGKTNLAMLM 305 (652)
Q Consensus 292 FPSaCGKTnlAMl~ 305 (652)
.|+|||||.||-..
T Consensus 57 GppGtGKTtlAr~i 70 (447)
T 3pvs_A 57 GPPGTGKTTLAEVI 70 (447)
T ss_dssp CSTTSSHHHHHHHH
T ss_pred CCCCCcHHHHHHHH
Confidence 58999999999764
No 348
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=22.06 E-value=32 Score=31.96 Aligned_cols=23 Identities=26% Similarity=0.227 Sum_probs=15.4
Q ss_pred CcccchhhcccCCC---CCCceEEEe
Q psy17657 294 SACGKTNLAMLMPT---LYDWKVECV 316 (652)
Q Consensus 294 SaCGKTnlAMl~p~---~pGwkve~V 316 (652)
.|+|||++|+..-. ..|.||-.|
T Consensus 12 gGvGKTt~a~~LA~~la~~g~~Vlli 37 (237)
T 1g3q_A 12 GGTGKTTVTANLSVALGDRGRKVLAV 37 (237)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 38999999875432 147777665
No 349
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=21.88 E-value=34 Score=39.97 Aligned_cols=26 Identities=27% Similarity=0.367 Sum_probs=21.3
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+-|+=|.|+.+=|+ .+|||||++||+
T Consensus 29 i~v~iP~~~l~viT--GvSGSGKSSLaf 54 (842)
T 2vf7_A 29 ISVKVPRDALVVFT--GVSGSGKSSLAF 54 (842)
T ss_dssp EEEEEESSSEEEEE--SSTTSSHHHHHT
T ss_pred eeEEecCCCEEEEE--CCCCCCHHHHHH
Confidence 45666888777666 899999999998
No 350
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=21.83 E-value=84 Score=30.33 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=30.4
Q ss_pred HHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHH----hcCccc
Q psy17657 40 KLLKFITESANLCKPKDIHICDGTEEENKAILKKMV----DTNTVK 81 (652)
Q Consensus 40 ~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~----~~G~~~ 81 (652)
++++++++... ++|+.|+++.|+.+=++.+.+.+. +.|..+
T Consensus 47 ~~~~~la~~~~-~~~~~i~~~~g~~~a~~~~~~~~~~~~~~~gd~v 91 (382)
T 4hvk_A 47 EAREKVAKLVN-GGGGTVVFTSGATEANNLAIIGYAMRNARKGKHI 91 (382)
T ss_dssp HHHHHHHHHTT-CTTEEEEEESSHHHHHHHHHHHHHHHHGGGCCEE
T ss_pred HHHHHHHHHcC-CCcCeEEEECCchHHHHHHHHHhhhhhcCCCCEE
Confidence 56666666555 368899999999988888888776 666443
No 351
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=21.71 E-value=22 Score=37.66 Aligned_cols=13 Identities=38% Similarity=0.424 Sum_probs=11.5
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||-.
T Consensus 174 GppGtGKT~lA~a 186 (444)
T 2zan_A 174 GPPGTGKSYLAKA 186 (444)
T ss_dssp CSTTSSHHHHHHH
T ss_pred CCCCCCHHHHHHH
Confidence 7999999999864
No 352
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=21.53 E-value=45 Score=28.31 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=13.4
Q ss_pred EEEEEEcCCcccchhhc
Q psy17657 286 MFVAAAFPSACGKTNLA 302 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlA 302 (652)
.-|+-..+++||||+|.
T Consensus 4 ~ki~v~G~~~~GKssli 20 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 44666789999999984
No 353
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=21.53 E-value=30 Score=30.32 Aligned_cols=20 Identities=35% Similarity=0.100 Sum_probs=15.0
Q ss_pred cEEEEEEEcCCcccchhhcc
Q psy17657 284 KKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAM 303 (652)
...-|+-..+++||||+|.-
T Consensus 22 ~~~~i~v~G~~~~GKSsli~ 41 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLN 41 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 34456667899999999953
No 354
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=21.50 E-value=38 Score=36.40 Aligned_cols=15 Identities=40% Similarity=0.408 Sum_probs=12.6
Q ss_pred EcCCcccchhhcccC
Q psy17657 291 AFPSACGKTNLAMLM 305 (652)
Q Consensus 291 AFPSaCGKTnlAMl~ 305 (652)
..|+|||||.||-..
T Consensus 83 ~GppGtGKTtla~~l 97 (516)
T 1sxj_A 83 YGPPGIGKTTAAHLV 97 (516)
T ss_dssp ECSTTSSHHHHHHHH
T ss_pred ECCCCCCHHHHHHHH
Confidence 489999999998653
No 355
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=21.35 E-value=35 Score=40.69 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=21.5
Q ss_pred eeeeCCCCcEEEEEEEcCCcccchhhcc
Q psy17657 276 LGVTNPEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 276 lgvt~P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
+-|+=|.++.+=|+ .+||+||++||+
T Consensus 37 i~v~iP~~~lvv~t--G~SGSGKSSLaf 62 (972)
T 2r6f_A 37 IDVEIPRGKLVVLT--GLSGSGKSSLAF 62 (972)
T ss_dssp EEEEEETTSEEEEE--ESTTSSHHHHHT
T ss_pred eeeeccCCcEEEEE--CCCCCCHHHHHH
Confidence 44666888777777 899999999998
No 356
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=21.26 E-value=38 Score=37.90 Aligned_cols=20 Identities=15% Similarity=0.154 Sum_probs=16.1
Q ss_pred CCCcEEEEEEEcCCcccchhhc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLA 302 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlA 302 (652)
++|+.+=+. .|||||||+|.
T Consensus 101 ~~Gei~~Lv--GpNGaGKSTLL 120 (608)
T 3j16_B 101 RPGQVLGLV--GTNGIGKSTAL 120 (608)
T ss_dssp CTTSEEEEE--CCTTSSHHHHH
T ss_pred CCCCEEEEE--CCCCChHHHHH
Confidence 458877666 89999999985
No 357
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=21.14 E-value=33 Score=30.38 Aligned_cols=20 Identities=30% Similarity=0.266 Sum_probs=15.3
Q ss_pred cEEEEEEEcCCcccchhhcc
Q psy17657 284 KKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAM 303 (652)
+..-|+-..+++||||+|.-
T Consensus 47 ~~~~i~vvG~~g~GKSsll~ 66 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLT 66 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44556777899999999853
No 358
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=21.14 E-value=23 Score=33.87 Aligned_cols=13 Identities=23% Similarity=0.064 Sum_probs=11.0
Q ss_pred cCCcccchhhccc
Q psy17657 292 FPSACGKTNLAML 304 (652)
Q Consensus 292 FPSaCGKTnlAMl 304 (652)
.|+|||||.||-.
T Consensus 36 G~~GtGKt~la~~ 48 (265)
T 2bjv_A 36 GERGTGKELIASR 48 (265)
T ss_dssp CCTTSCHHHHHHH
T ss_pred CCCCCcHHHHHHH
Confidence 6899999999854
No 359
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=21.11 E-value=35 Score=36.45 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=16.5
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
.|..+-|+ .++|+|||.||+-
T Consensus 196 ~G~liiIa--G~pG~GKTtlal~ 216 (444)
T 3bgw_A 196 RRNFVLIA--ARPSMGKTAFALK 216 (444)
T ss_dssp SSCEEEEE--ECSSSSHHHHHHH
T ss_pred CCcEEEEE--eCCCCChHHHHHH
Confidence 47776666 6799999999884
No 360
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=21.07 E-value=23 Score=36.34 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=14.3
Q ss_pred cEEEEEEEcCCcccchhhccc
Q psy17657 284 KKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAMl 304 (652)
+-..+. .|+|||||.||-.
T Consensus 149 ~~vLL~--GppGtGKT~la~a 167 (389)
T 3vfd_A 149 RGLLLF--GPPGNGKTMLAKA 167 (389)
T ss_dssp SEEEEE--SSTTSCHHHHHHH
T ss_pred ceEEEE--CCCCCCHHHHHHH
Confidence 344444 7999999999865
No 361
>3ml6_A Chimeric complex between protein dishevlled2 HOMO and clathrin adaptor AP-2 complex...; dishevelled, frizzled internalization; 3.50A {Mus musculus}
Probab=20.95 E-value=94 Score=32.93 Aligned_cols=62 Identities=5% Similarity=0.138 Sum_probs=44.7
Q ss_pred CCHHHHHHHHHHHhhcCCCeEEEEcCCHHHHHHHHHHHHhcCccccccc----ccCeEEeccCCCCccccccceE
Q psy17657 37 VSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRK----HVNCWLASTNPADVARVEDKTF 107 (652)
Q Consensus 37 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k----~~n~~l~rsdP~DvARve~rTf 107 (652)
+-.++-+|+-+..+.++ |.+|...+.+.|++.|-+..... .++||+.+.|-.-++|-++++.
T Consensus 40 ~G~elVdWL~~~~~~~~---------~R~eA~~~g~~Ll~~G~i~hv~~~~~F~d~~~y~f~~~~~~~~~~s~~~ 105 (385)
T 3ml6_A 40 LGSDVVDWLYHHVEGFP---------ERREARKYASGLLKAGLIRHTVNKITFSEQCYYVFGDLSGGPRPYSPQP 105 (385)
T ss_dssp EHHHHHHHHHHTCCSCS---------SHHHHHHHHHHHHHHSSEEESSSCSSCCSSSEEEECCCCC------CCC
T ss_pred EhHHHHHHHHHccCCCC---------CHHHHHHHHHHHHhCCcEEEcCCcceecCcceEEeeccccccCccCCCC
Confidence 34678888877554332 78999999999999999999852 3889999999888888888875
No 362
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=20.79 E-value=50 Score=28.45 Aligned_cols=21 Identities=19% Similarity=0.169 Sum_probs=16.3
Q ss_pred CcEEEEEEEcCCcccchhhcc
Q psy17657 283 GKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 283 G~~~yvaaAFPSaCGKTnlAM 303 (652)
....-|+-..+++||||+|.-
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~ 27 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLL 27 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHH
T ss_pred CcceEEEEECCCCCCHHHHHH
Confidence 445667778899999999853
No 363
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=20.73 E-value=46 Score=29.41 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=16.2
Q ss_pred CCCcEEEEEEEcCCcccchhhcc
Q psy17657 281 PEGKKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 281 P~G~~~yvaaAFPSaCGKTnlAM 303 (652)
|.....-|+-..+++||||+|.-
T Consensus 13 ~~~~~~ki~v~G~~~~GKSsl~~ 35 (199)
T 4bas_A 13 QSKTKLQVVMCGLDNSGKTTIIN 35 (199)
T ss_dssp ---CEEEEEEECCTTSCHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 33456667778899999999954
No 364
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=20.43 E-value=49 Score=27.91 Aligned_cols=18 Identities=22% Similarity=0.222 Sum_probs=13.8
Q ss_pred EEEEEEcCCcccchhhcc
Q psy17657 286 MFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 286 ~yvaaAFPSaCGKTnlAM 303 (652)
.-|+-..+++||||+|.-
T Consensus 5 ~~i~v~G~~~~GKssl~~ 22 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTL 22 (168)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 446666789999999843
No 365
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=20.39 E-value=40 Score=40.93 Aligned_cols=24 Identities=29% Similarity=0.609 Sum_probs=19.1
Q ss_pred CCCCcEEEEEEEcCCcccchhhcccC
Q psy17657 280 NPEGKKMFVAAAFPSACGKTNLAMLM 305 (652)
Q Consensus 280 ~P~G~~~yvaaAFPSaCGKTnlAMl~ 305 (652)
=+.|++.=|+ .|||||||+|+.+.
T Consensus 1102 I~~Ge~vaIV--G~SGsGKSTL~~lL 1125 (1321)
T 4f4c_A 1102 VEPGQTLALV--GPSGCGKSTVVALL 1125 (1321)
T ss_dssp ECTTCEEEEE--CSTTSSTTSHHHHH
T ss_pred ECCCCEEEEE--CCCCChHHHHHHHH
Confidence 3568887676 79999999998754
No 366
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=20.24 E-value=41 Score=29.10 Aligned_cols=20 Identities=25% Similarity=0.102 Sum_probs=15.4
Q ss_pred cEEEEEEEcCCcccchhhcc
Q psy17657 284 KKMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 284 ~~~yvaaAFPSaCGKTnlAM 303 (652)
+..-|+-..+++||||+|.-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~ 26 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLD 26 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 44556777899999999853
No 367
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=20.20 E-value=50 Score=28.06 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=14.6
Q ss_pred EEEEEEEcCCcccchhhcc
Q psy17657 285 KMFVAAAFPSACGKTNLAM 303 (652)
Q Consensus 285 ~~yvaaAFPSaCGKTnlAM 303 (652)
..-|+-..+++||||+|.-
T Consensus 5 ~~~i~v~G~~~~GKssl~~ 23 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQ 23 (168)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHH
Confidence 4456666899999999854
No 368
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=20.19 E-value=1.1e+02 Score=31.05 Aligned_cols=94 Identities=14% Similarity=0.239 Sum_probs=54.9
Q ss_pred cCCCeEEEEcCCHHHHHHHHHHHHhcCcccccccccCeEEeccCCCCccccccceEEEecCC-CCcCCCCCCCccCcccc
Q psy17657 52 CKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNR-SDVVPDHKPGVKSQLGN 130 (652)
Q Consensus 52 ~~P~~I~icdGS~eE~~~l~~~~~~~G~~~~L~k~~n~~l~rsdP~DvARve~rTfI~t~~~-~da~p~~~~Gv~~~l~n 130 (652)
+.|+.|+++.|+.+=++.+.+.+.+.|..+=+. ..+|..+. +.++.-..+.+-.+-. .+ ++
T Consensus 117 ~~~~~v~~~~g~~ea~~~a~~~~~~~gd~Vi~~--~~~y~~~~---~~~~~~g~~~~~~~~~~~~-------------~~ 178 (421)
T 3l8a_A 117 VVKEDILFIDGVVPAISIALQAFSEKGDAVLIN--SPVYYPFA---RTIRLNDHRLVENSLQIIN-------------GR 178 (421)
T ss_dssp CCGGGEEEESCHHHHHHHHHHHHSCTEEEEEEE--ESCCHHHH---HHHHHTTEEEEEEECEEET-------------TE
T ss_pred CCHHHEEEcCCHHHHHHHHHHHhcCCCCEEEEC--CCCcHHHH---HHHHHCCCEEEeccccccC-------------CC
Confidence 579999999999998888888887766433221 12232221 2343333343332211 10 12
Q ss_pred c-CCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCC
Q psy17657 131 W-ISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLS 169 (652)
Q Consensus 131 w-~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s 169 (652)
| ++++++++.+.+ ..-.+.++.-.-+|.|..++
T Consensus 179 ~~~d~~~le~~i~~------~~~~~vil~~p~nptG~~~~ 212 (421)
T 3l8a_A 179 FEIDFEQLEKDIID------NNVKIYLLCSPHNPGGRVWD 212 (421)
T ss_dssp EECCHHHHHHHHHH------TTEEEEEEESSBTTTTBCCC
T ss_pred eeeCHHHHHHHhhc------cCCeEEEECCCCCCCCCcCC
Confidence 3 688999988874 12235566666788886643
No 369
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=20.15 E-value=2.8e+02 Score=27.91 Aligned_cols=107 Identities=10% Similarity=0.052 Sum_probs=62.2
Q ss_pred CCHHHHHHHHHHHhhcCCCeEEEEcCCHHHH--HHHHHHHHh--c----------CcccccccccCeEEeccCCCCcccc
Q psy17657 37 VSPKLLKFITESANLCKPKDIHICDGTEEEN--KAILKKMVD--T----------NTVKRVRKHVNCWLASTNPADVARV 102 (652)
Q Consensus 37 l~~~v~~~V~e~a~L~~P~~I~icdGS~eE~--~~l~~~~~~--~----------G~~~~L~k~~n~~l~rsdP~DvARv 102 (652)
-.+++++.|++... +.|+.|++..|+.+=. +.+.+.+++ . |..+-+.. | +|.. ..++++.
T Consensus 79 g~~~lr~~ia~~~~-~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~-p-~y~~---~~~~~~~ 152 (427)
T 3ppl_A 79 GIVDIRQIWADLLG-VPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPV-P-GYDR---HFSITER 152 (427)
T ss_dssp CCHHHHHHHHHHHT-SCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEE-S-CCHH---HHHHHHH
T ss_pred CcHHHHHHHHHHhC-CCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcC-C-CcHH---HHHHHHH
Confidence 35788888888875 7999999999999888 567777766 4 33222211 1 1111 1234444
Q ss_pred ccceEEEecCCCCcCCCCCCCccCcccccCCHhhHHHHHHhcCCCccCCCeeEEEecccCCCCCCCC
Q psy17657 103 EDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLS 169 (652)
Q Consensus 103 e~rTfI~t~~~~da~p~~~~Gv~~~l~nw~~p~~~~~~l~~~f~G~M~GRTMYViPfsmGPigSp~s 169 (652)
-.-+.+..+-.++ . ++++++++.++. =+-|-+|++|..--|.|.-++
T Consensus 153 ~g~~~~~v~~~~~--------------g-~d~~~l~~~l~~-----~~~~~v~~~p~~~NPtG~~~~ 199 (427)
T 3ppl_A 153 FGFEMISVPMNED--------------G-PDMDAVEELVKN-----PQVKGMWVVPVFSNPTGFTVT 199 (427)
T ss_dssp TTCEEEEEEEETT--------------E-ECHHHHHHHTTS-----TTEEEEEECCSSCTTTCCCCC
T ss_pred cCCEEEEeCCCCC--------------C-CCHHHHHHHHhc-----CCCeEEEECCCCCCCCCccCC
Confidence 3333333221111 1 577777776631 022456677888888887643
No 370
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=20.09 E-value=31 Score=35.77 Aligned_cols=21 Identities=24% Similarity=0.301 Sum_probs=15.9
Q ss_pred CCcEEEEEEEcCCcccchhhccc
Q psy17657 282 EGKKMFVAAAFPSACGKTNLAML 304 (652)
Q Consensus 282 ~G~~~yvaaAFPSaCGKTnlAMl 304 (652)
+|++.=+. .|||||||+|..+
T Consensus 70 ~Gq~~gIi--G~nGaGKTTLl~~ 90 (347)
T 2obl_A 70 IGQRIGIF--AGSGVGKSTLLGM 90 (347)
T ss_dssp TTCEEEEE--ECTTSSHHHHHHH
T ss_pred CCCEEEEE--CCCCCCHHHHHHH
Confidence 57766555 6999999999653
Done!