RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17657
(652 letters)
>gnl|CDD|216136 pfam00821, PEPCK, Phosphoenolpyruvate carboxykinase. catalyzes the
formation of phosphoenolpyruvate by decarboxylation of
oxaloacetate.
Length = 586
Score = 951 bits (2460), Expect = 0.0
Identities = 346/607 (57%), Positives = 423/607 (69%), Gaps = 30/607 (4%)
Query: 43 KFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVR--KHVNCWLASTNPADVA 100
+++ E A LC+P ++ICDG+EEE + KK V+ + + KH NC+LA ++P+DVA
Sbjct: 1 EWVAEVAELCQPDRVYICDGSEEEYDRLRKKAVEAGELIPLNEEKHPNCYLARSDPSDVA 60
Query: 101 RVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFS 160
RVE +TFICT ++ D P + NW+ P + ++ F GCMK RTMYVIPFS
Sbjct: 61 RVESRTFICTPDKEDAGPTN---------NWMDPEEMKAELRELFKGCMKGRTMYVIPFS 111
Query: 161 MGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRALHSVGTPSSGVH 220
MGPVGSP SK+GV++TDSPYVV SMRIMTRMG VLD + ++ EFVR LHSVG P
Sbjct: 112 MGPVGSPFSKIGVQLTDSPYVVHSMRIMTRMGFEVLDALGEDGEFVRCLHSVGAPLEPGQ 171
Query: 221 EYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEPNNR------ 274
+ +WPC+P + I+H P+ I S+GSGYGGN+LLGKKCFALRI +
Sbjct: 172 KDVNWPCNPDKRYIVHFPEERTIWSFGSGYGGNALLGKKCFALRIASYMARDEGWLAEHM 231
Query: 275 -ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRA 333
ILG+TNPEG+K ++AAAFPSACGKTNLAML PTL WKVECVGDDIAWMKF E+G LRA
Sbjct: 232 LILGITNPEGRKKYIAAAFPSACGKTNLAMLTPTLPGWKVECVGDDIAWMKFGEDGRLRA 291
Query: 334 INPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKD 393
INPE+GFFGVAPGT+ TNP AM T+ NT+FTNV T D V+WEG+EEE P A + D
Sbjct: 292 INPENGFFGVAPGTNEKTNPNAMATLPKNTIFTNVALTDDGDVWWEGMEEE--PPAHLID 349
Query: 394 WLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRPEGVPLVY 453
W G+PW PAAHPNSRF P A+CP +DPDW+ P+GVPISAIIFGGRRP+ VPLVY
Sbjct: 350 WKGKPWTPESGEPAAHPNSRFTAPLAQCPNLDPDWEDPEGVPISAIIFGGRRPDTVPLVY 409
Query: 454 EAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPN 513
EAFDW+HGVF+GASM SE TAAAE K + +DP AM PF GYN G YLQHWL + K+
Sbjct: 410 EAFDWEHGVFIGASMESETTAAAEGKVGVLRHDPMAMLPFCGYNMGDYLQHWLSMGKKGK 469
Query: 514 VKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHN 573
KLPKIFHVNWFRKD+DGKF+WPGFG+N RVL WI +RV G +PIGYIP Y
Sbjct: 470 -KLPKIFHVNWFRKDEDGKFLWPGFGENKRVLKWILRRVEGEVDAVE-TPIGYIPKYE-- 525
Query: 574 VINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGL 633
DL + +ELF IDK+ W QE+ IEKY+ ++ G DLP + E+ L
Sbjct: 526 -----DLNLLGLDLPEEDYEELFSIDKEEWLQEVERIEKYY-EEFGDDLPKELWEELEAL 579
Query: 634 RQRLKSY 640
+RLK
Sbjct: 580 EERLKKA 586
>gnl|CDD|238417 cd00819, PEPCK_GTP, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (GTP) for the
phosphoryl transfer, and has a strict requirement for
divalent metal ions for activity. PEPCK's separate into
two phylogenetic groups based on their nucleotide
substrate specificity, this model describes the
GTP-dependent group.
Length = 579
Score = 906 bits (2344), Expect = 0.0
Identities = 334/596 (56%), Positives = 410/596 (68%), Gaps = 28/596 (4%)
Query: 41 LLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVA 100
LL+++ E+A LC+P ++ICDG+EEE + MV+ R+ K+ N +LA ++P+DVA
Sbjct: 1 LLEWVEEAAELCQPDSVYICDGSEEEYDRLRDLMVEQGEEIRLNKYPNSYLARSDPSDVA 60
Query: 101 RVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFS 160
RVE +TFIC+ + D NW+ P + +K F GCM+ RTMYVIPFS
Sbjct: 61 RVESRTFICSEDEED---------AGPTNNWMDPEEMKAELKELFKGCMRGRTMYVIPFS 111
Query: 161 MGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRALHSVGTPSSGVH 220
MGP+GSP+SK+GVE+TDSPYVV SMRIMTRMGKAVLD + EFV LHSVG P S
Sbjct: 112 MGPLGSPISKIGVELTDSPYVVHSMRIMTRMGKAVLDAL-GEGEFVPCLHSVGAPLS-AG 169
Query: 221 EYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQV--KEPNNR---- 274
+ WPC+P++ I+H P+ EI S+GSGYGGN+LLGKKCFALRI V ++
Sbjct: 170 QKDVWPCNPEKKYIVHFPEEREIWSFGSGYGGNALLGKKCFALRIASVMARDEGWLAEHM 229
Query: 275 -ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRA 333
ILGVTNPEG+K + AAAFPSACGKTNLAML+P L WKVE VGDDIAWMKF E+G L A
Sbjct: 230 LILGVTNPEGEKKYFAAAFPSACGKTNLAMLIPPLPGWKVETVGDDIAWMKFGEDGRLYA 289
Query: 334 INPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKD 393
INPE+GFFGVAPGT+ TNP AM T+ NT+FTNV T D V+WEGL EE T
Sbjct: 290 INPEAGFFGVAPGTNAKTNPNAMATLHKNTIFTNVALTEDGDVWWEGLTEEPPEHLTDWQ 349
Query: 394 WLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRPEGVPLVY 453
LG+ W PAAHPNSRF PA++CP +DP+W++P+GVPI AIIFGGRRP+ VPLVY
Sbjct: 350 GLGKRWTPGDGEPAAHPNSRFTAPASQCPNIDPEWENPEGVPIDAIIFGGRRPDTVPLVY 409
Query: 454 EAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPN 513
EAF+W HGVF+GASM SE TAAAE K + DPFAM PF GYN G Y +HWL ++
Sbjct: 410 EAFNWNHGVFIGASMGSETTAAAEGKVGVVRRDPFAMLPFCGYNMGDYFRHWLSFGRKLG 469
Query: 514 VKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHN 573
KLPKIF VNWFRKD+DGKF+WPGFG+N RVL WIF+RV G K +PIGYIP Y
Sbjct: 470 AKLPKIFGVNWFRKDEDGKFLWPGFGENSRVLKWIFRRVEG-KANAIETPIGYIPKY--G 526
Query: 574 VINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAE 629
++L L K L+ LF +D+D+W QEL IE+Y +DLP + E
Sbjct: 527 DLDLKGL---GKSKLD----FLFSVDEDYWLQELIEIEEYLEKIGRADLPQELFDE 575
>gnl|CDD|235256 PRK04210, PRK04210, phosphoenolpyruvate carboxykinase; Provisional.
Length = 601
Score = 839 bits (2171), Expect = 0.0
Identities = 330/613 (53%), Positives = 413/613 (67%), Gaps = 33/613 (5%)
Query: 39 PKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVR--KHVNCWLASTNP 96
PKLL+++ E A L +P + CDG+EEE + + V+ T ++ K N +LA ++P
Sbjct: 11 PKLLEWVAEVAELTQPDRVVWCDGSEEEYDRLRDQAVEAGTEIKLNPEKRPNSFLARSDP 70
Query: 97 ADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYV 156
+DVARVED+TFIC+ D P NW+ PA+ E +K F GCM+ RTMYV
Sbjct: 71 SDVARVEDRTFICSEKEEDAGP---------TNNWMDPAEMRETLKGLFKGCMRGRTMYV 121
Query: 157 IPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRALHSVGTPS 216
+PFSMGP+GSP +K+GVEITDSPYVV SMRIMTRMGKAVLD + ++ EFV +HSVG P
Sbjct: 122 VPFSMGPLGSPFAKIGVEITDSPYVVHSMRIMTRMGKAVLDVLGEDGEFVPCVHSVGAPL 181
Query: 217 SGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEPNNR-- 274
+ WPC+ + I+H P+T EI SYGSGYGGN+LLGKKCFALRI V +
Sbjct: 182 EPGQKDVPWPCNDTK-YIVHFPETREIWSYGSGYGGNALLGKKCFALRIASVMARDEGWL 240
Query: 275 -----ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEG 329
ILGVT+PEG+K + AAAFPSACGKTNLAML+P + WKVE VGDDIAW++ E+G
Sbjct: 241 AEHMLILGVTSPEGRKTYFAAAFPSACGKTNLAMLIPPIPGWKVETVGDDIAWIRPGEDG 300
Query: 330 NLRAINPESGFFGVAPGTSCNTNPQAMQTIFH-NTMFTNVGTTSDDGVYWEGLEEETNPE 388
L AINPE+GFFGVAPGT+ TNP AM T+ N +FTNV T D V+WEG+ EE P
Sbjct: 301 RLYAINPEAGFFGVAPGTNEKTNPNAMATLKPGNVIFTNVALTDDGDVWWEGMTEEP-PA 359
Query: 389 ATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRPEG 448
I DW G W PAAHPN+RF VPA++CP +DP+W+ P GVPISAIIFGGRR +
Sbjct: 360 HLI-DWQGNDWTPGSGEPAAHPNARFTVPASQCPNLDPEWEDPAGVPISAIIFGGRRSDT 418
Query: 449 VPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDL 508
VPLV EAFDWQHGV++GA+M SE TAAAE K + DP AM PF GYN G Y QHWLD
Sbjct: 419 VPLVTEAFDWQHGVYMGATMGSETTAAAEGKVGVVRRDPMAMLPFCGYNMGDYFQHWLDF 478
Query: 509 QKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIP 568
K+ KLPKIF VNWFRKD+DGKF+WPGFG+N+RVL WI RV G +PIGY+P
Sbjct: 479 GKKLGSKLPKIFGVNWFRKDEDGKFLWPGFGENMRVLKWIVDRVEGEADAVE-TPIGYLP 537
Query: 569 DYHH-NVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIH 627
Y +++ L D E+D ++LF +D D W EL IE+ F ++ G LP +
Sbjct: 538 KYEDLDLLGL-DYSEED-------YEKLFSVDVDEWLAELELIEELF-EKFGDRLPKELF 588
Query: 628 AEISGLRQRLKSY 640
E+ L++RL +
Sbjct: 589 EELEALKKRLLAA 601
>gnl|CDD|224193 COG1274, PckA, Phosphoenolpyruvate carboxykinase (GTP) [Energy
production and conversion].
Length = 608
Score = 732 bits (1891), Expect = 0.0
Identities = 308/623 (49%), Positives = 398/623 (63%), Gaps = 34/623 (5%)
Query: 28 DLVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRV--RK 85
D + + L +I E A L +P D+ +CDG+ EE + KMV+ ++ K
Sbjct: 7 DGLDKLAPINNQGLKSWIEEVAELTEPDDVVVCDGSPEEYDYLCWKMVEAGEEIKLNPEK 66
Query: 86 HVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRF 145
H N +LA +NP+DVARVE++TFIC+ D P NW+ P + + F
Sbjct: 67 HPNSYLARSNPSDVARVEERTFICSPKEEDAGP---------TNNWMDPQEMRSEMNELF 117
Query: 146 PGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEF 205
GCM+ RTMYV+PF MGP+ SP + +GVE+TDSPYVV SMRIMTRMGK VL+++ + F
Sbjct: 118 RGCMRGRTMYVVPFCMGPLNSPFTILGVELTDSPYVVHSMRIMTRMGKEVLEKLGDDGNF 177
Query: 206 VRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRI 265
V+ +HSVG P + WPC+ + I H P+ E+ S+GSGYGGN+LLGKKC ALRI
Sbjct: 178 VKCVHSVGKPLDPGQKDVAWPCNETKYIR-HFPEDREVWSFGSGYGGNALLGKKCLALRI 236
Query: 266 NQVKEPNN-------RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGD 318
V + ILGVTNPEGKK + AAFPSACGKTNLAM+ PT+ WK E +GD
Sbjct: 237 ASVMARDEGWLAEHMLILGVTNPEGKKYYFTAAFPSACGKTNLAMIPPTIPGWKAETIGD 296
Query: 319 DIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFH-NTMFTNVGTTSDDGVY 377
DIAW+KF ++G L A+NPE GFFGVAPGT+ TNP AM T+ NT+FTNV T D V+
Sbjct: 297 DIAWIKFGKDGRLYAVNPEIGFFGVAPGTNEKTNPNAMATLHSGNTIFTNVALTDDGDVW 356
Query: 378 WEGLEEETNPEATIKDWLGRPWN-KNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPI 436
WEGLE E P + DW G W PAAHPNSRF VP ++CP +DP+W P+GVPI
Sbjct: 357 WEGLEGE--PPEELIDWKGNDWRPGETGEPAAHPNSRFTVPLSQCPNLDPEWDDPEGVPI 414
Query: 437 SAIIFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGY 496
AIIFGGRRP VPLV EAFDW+HGVF+GA+M SE TAAAE K + DP AM PF GY
Sbjct: 415 DAIIFGGRRPTTVPLVTEAFDWEHGVFMGATMGSETTAAAEGKVGVLRRDPMAMLPFCGY 474
Query: 497 NFGQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNK 556
N G Y +HWL+ ++ KLPKIF VNWFR+ +DG+F+WPGFG+N RVL WI R+ G+
Sbjct: 475 NMGDYFRHWLEFGRKLRDKLPKIFGVNWFRRGEDGRFLWPGFGENSRVLKWIVDRIEGDA 534
Query: 557 TVRRFSPIGYIPDYHH-NVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFN 615
+PIGYIP Y N+ L D ++D +++LF ID + W E+ I +Y+
Sbjct: 535 NAIE-TPIGYIPKYEDLNLDGL-DYSKED-------VEKLFTIDAEGWLAEIERIWEYY- 584
Query: 616 DQVGSDLPPAIHAEISGLRQRLK 638
G+ +P + E+ L++RL
Sbjct: 585 SFFGNKIPEELLDELEALKERLG 607
>gnl|CDD|238900 cd01919, PEPCK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP or GTP) for
the phosphoryl transfer, and has a strict requirement
for divalent metal ions for activity. PEPCK's separate
into two phylogenetic groups based on their nucleotide
substrate specificity (the ATP-, and GTP-dependent
groups).
Length = 515
Score = 439 bits (1130), Expect = e-148
Identities = 214/588 (36%), Positives = 282/588 (47%), Gaps = 87/588 (14%)
Query: 56 DIHICDGTEEENKAILKKMVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSD 115
IHI D EN +L++M++ +R N LA T+P D R I T ++
Sbjct: 2 HIHIND----ENGRLLQQMLEEY--GILRLTKNGALAVTDPRDTGRSPSDKVIVTQDQRR 55
Query: 116 VVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEI 175
VP K G+ QL W+S D+++A RFPG MK RT++V+ F MGP GSPL + E+
Sbjct: 56 TVPIPKTGLS-QLNRWLSEEDFEKAFNARFPGLMKGRTLFVVDFFMGP-GSPLRLIVREL 113
Query: 176 TDSPYVVASMRIMTRMGKAVLDEIAK-NDEFVRALHSVGTPSSGVHEYPHWPCDPQRTII 234
TDSPYV A MRIMT M +E+A D V+ L+SVG P WP P T++
Sbjct: 114 TDSPYVAAFMRIMTIMPTD--EELAAFGDPDVKCLNSVGCPL----PLQKWPGLPSLTLV 167
Query: 235 LHKPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEPNN------RILGVTNPEGKKMFV 288
H PD E +G+GYGG KK F ++++ TN + +
Sbjct: 168 AHNPDRREQIIFGTGYGG---EMKKGFLRMMSRLAPEEGWLAMHMSANVGTNGD----VL 220
Query: 289 AAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTS 348
S GKT L+M D K E +GDD W K D NPE G + A G S
Sbjct: 221 VFFGLSGTGKTTLSM------DPKRELIGDDEHWWKDDG-----VFNPEGGCYAKAIGLS 269
Query: 349 CNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDWLGRPWNKNCSTPAA 408
T P + I N +F NV TSD G+ +E + A
Sbjct: 270 VKTEPNIYKAIRKNAIFENVAETSDGGIDFEDIS-------------------------A 304
Query: 409 HPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRPEGV-PLVYEAFDWQHGVFVGAS 467
HPN+R C PA+ P +D W+S I +IF R GV P VY WQ GVFV A+
Sbjct: 305 HPNTRVCYPASHIPIIDAAWES--AGHIEGVIFLTRDAFGVVPPVYRLT-WQQGVFVFAA 361
Query: 468 MRSEATAA--AEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNVKLPKIFHVNWF 525
R+ ATA A HKGK + P RPF GY+F +YL+H L + + P PKIF VN
Sbjct: 362 GRTAATAGTEAGHKGKIPMFSPCFGRPFLGYHFTKYLEHLLSMMQHPL---PKIFLVNTG 418
Query: 526 RKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPI--GYIPDYHHNVINLTDLYED 583
RK K+GKF PGFG+ ++D IF + + PI YIP +NL L
Sbjct: 419 RKGKEGKFKRPGFGETRAIIDAIFNGILDKAETKLT-PIFNLYIPKA----LNLVGLGHL 473
Query: 584 DKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEIS 631
+ N+ ELF K+FW++ + EKYF DQV + AI EI
Sbjct: 474 NPR----NMMELFSQSKEFWDKLVEDFEKYFVDQVNA---CAIEREIL 514
>gnl|CDD|238418 cd00820, PEPCK_HprK, Phosphoenolpyruvate carboxykinase (PEPCK), a
critical gluconeogenic enzyme, catalyzes the first
committed step in the diversion of tricarboxylic acid
cycle intermediates toward gluconeogenesis. It catalyzes
the reversible decarboxylation and phosphorylation of
oxaloacetate to yield phosphoenolpyruvate and carbon
dioxide, using a nucleotide molecule (ATP or GTP) for
the phosphoryl transfer, and has a strict requirement
for divalent metal ions for activity. PEPCK's separate
into two phylogenetic groups based on their nucleotide
substrate specificity (the ATP-, and GTP-dependent
groups).HprK/P, the bifunctional histidine-containing
protein kinase/phosphatase, controls the phosphorylation
state of the phosphocarrier protein HPr and regulates
the utilization of carbon sources by gram-positive
bacteria. It catalyzes both the ATP-dependent
phosphorylation of HPr and its dephosphorylation by
phosphorolysis. PEPCK and the C-terminal catalytic
domain of HprK/P are structurally similar with conserved
active site residues suggesting that these two
phosphotransferases have related functions.
Length = 107
Score = 80.8 bits (199), Expect = 2e-18
Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 3/63 (4%)
Query: 284 KKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGV 343
K+ V S GKT LA+ + K VGDD ++ D + L NPE G
Sbjct: 14 GKVGVLITGDSGIGKTELALELI---KRKHRLVGDDNVEIREDSKDELIGRNPELGLEIR 70
Query: 344 APG 346
Sbjct: 71 LRL 73
Score = 48.8 bits (116), Expect = 3e-07
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 511 RPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIF 549
R N+ L VN DK+G WPGF + +++
Sbjct: 72 RLNIFLITKKTVNVRPGDKEG---WPGFRNVAVIIEVAA 107
>gnl|CDD|218615 pfam05504, Spore_GerAC, Spore germination B3/ GerAC like,
C-terminal. The GerAC protein of the Bacillus subtilis
spore is required for the germination response to
L-alanine. Members of this family are thought to be
located in the inner spore membrane. Although the
function of this family is unclear, they are likely to
encode the components of the germination apparatus that
respond directly to this germinant, mediating the
spore's response.
Length = 171
Score = 31.8 bits (73), Expect = 0.56
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 14/79 (17%)
Query: 581 YEDDKPNLNVNLK------ELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIH------- 627
++ KP +N+K E F +EL +EK ++ ++ I
Sbjct: 63 IKNGKPKFKINIKLEGNISEYQSPLDLFNPKELKKLEKALEKEIKKEIEKLIKKLQKEYK 122
Query: 628 AEISGLRQRLKSYHP-LWR 645
+I G + L+ +P LW+
Sbjct: 123 VDIFGFGEYLRRKYPKLWK 141
>gnl|CDD|225100 COG2189, COG2189, Adenine specific DNA methylase Mod [DNA
replication, recombination, and repair].
Length = 590
Score = 31.7 bits (72), Expect = 1.2
Identities = 23/136 (16%), Positives = 39/136 (28%), Gaps = 25/136 (18%)
Query: 483 ILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNVKL-PKIFHVNW-FRKDKDGKFMWPGFGD 540
I+ PF NF +YL L + N P+ + N ++K+K K
Sbjct: 299 IIGKPFNGSGRIWANFKKYLIKGLKADQNYNDNGYPRYYPFNLRYKKEKLDK-------K 351
Query: 541 NIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDK 600
+ + NGN T + +L + + K +
Sbjct: 352 SKNRVIDPI---NGNGTTYGETARRKGY------NDLKYIIKSIKEVKIEKNPKA----- 397
Query: 601 DFWEQELNAIEKYFND 616
+ I YF
Sbjct: 398 --VPYLNDRILDYFAG 411
>gnl|CDD|221018 pfam11186, DUF2972, Protein of unknown function (DUF2972). Some
members in this family of proteins with unknown function
are annotated as sugar transferase proteins, however
this cannot be confirmed.
Length = 197
Score = 30.3 bits (69), Expect = 2.4
Identities = 18/108 (16%), Positives = 36/108 (33%), Gaps = 6/108 (5%)
Query: 515 KLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNV 574
KL K F+ N ++D F FG+ + +L + + +
Sbjct: 18 KLAKKFNFNPPKEDDKEIFEIKIFGEYLGLLPLTLYINSKENNISITKTNRVFIIFLEIK 77
Query: 575 INLTDLYEDDKPNLNVNLKELFYIDKDFWEQ------ELNAIEKYFND 616
N D+ ++ ++ + I K+ +E I+KY
Sbjct: 78 ENYIDITKELFNKNDILDNIIICIKKEDFEILKQDEKLFKKIKKYLKK 125
>gnl|CDD|234784 PRK00507, PRK00507, deoxyribose-phosphate aldolase; Provisional.
Length = 221
Score = 29.4 bits (67), Expect = 5.4
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 23 KIGEFDLVHGDLSSV----SPKLLKFITESANLCKPKDIHICD 61
K G++D V D+ +V +LK I E+ L + + C+
Sbjct: 101 KSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACE 143
>gnl|CDD|219473 pfam07580, Peptidase_M26_C, M26 IgA1-specific Metallo-endopeptidase
C-terminal region. These peptidases, which cleave
mammalian IgA, are found in Gram-positive bacteria.
Often found associated with pfam00746, they may be
attached to the cell wall.
Length = 731
Score = 29.6 bits (67), Expect = 6.0
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 5/51 (9%)
Query: 573 NVINLTDLYEDD-----KPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQV 618
N L DLY ++ K NL+ +K+L + + A EKY ++
Sbjct: 53 NDNKLKDLYLEESFDEVKANLDKLVKKLLENEDHILNGDNEAAEKYLVKKI 103
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 28.7 bits (65), Expect = 7.2
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 281 PEGKKMFVAAAFPSACGKTNLAMLMPTLYD 310
P G+ VA PS GK+ L L+P YD
Sbjct: 26 PAGE--TVALVGPSGSGKSTLVNLIPRFYD 53
>gnl|CDD|224446 COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large
subunit CoxL/CutL homologs [Energy production and
conversion].
Length = 731
Score = 29.2 bits (66), Expect = 7.8
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 5/44 (11%)
Query: 163 PVGSPLSKVGVEITDSPYVVASM-----RIMTRMGKAVLDEIAK 201
+G P V V D+ V R G AV+D AK
Sbjct: 480 ELGIPPDDVEVVHGDTDVPVGGWGSVGSRGTAVAGSAVIDAAAK 523
>gnl|CDD|193454 pfam12981, DUF3865, Domain of Unknown Function with PDB structure
(DUF3865). Family based of PDB:3B5P encoded by
ZP_00108531 from nitrogen-fixing cyanobacterium Nostoc
punctiforme pcc 73102 is a CADD-like protein of unknown
function. Superposition between protein structures
encoded by CT610 from Chlamydia trachomatis (PDB code
1rwc), pyrroloquinolinquinone synthase C (PqqC, PDB code
1otv) and ZP_00108531 revealed that putative active
sites in CT610 and ZP_00108531 are identical. ( REF:
http://www.topsan.org/Proteins/JCSG/3B5P).
Length = 231
Score = 28.4 bits (63), Expect = 9.5
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 13/54 (24%)
Query: 35 SSVSPKLLKFITESANLCKPKDI------------HICDGTEEENKAILKKMVD 76
++ P+L + PKD+ H+ D E E++ L+ V
Sbjct: 144 ATAIPELTLIVELVHEGAIPKDLQYENSIKQFFSKHL-DEWEIEHEDGLRTSVA 196
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.137 0.436
Gapped
Lambda K H
0.267 0.0573 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 34,282,252
Number of extensions: 3385320
Number of successful extensions: 2890
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2841
Number of HSP's successfully gapped: 17
Length of query: 652
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 549
Effective length of database: 6,369,140
Effective search space: 3496657860
Effective search space used: 3496657860
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.0 bits)