RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17657
(652 letters)
>2faf_A Phosphoenolpyruvate carboxykinase; pepck, phosphoryl transfer,
lyase; HET: 20S EPE 1PE; 1.70A {Gallus gallus} PDB:
2fah_A* 2qzy_A*
Length = 608
Score = 703 bits (1816), Expect = 0.0
Identities = 343/618 (55%), Positives = 430/618 (69%), Gaps = 21/618 (3%)
Query: 30 VHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNC 89
+ LS++ F+ E+ LC+P+++ +CDG+EEE K +L+ + D + + K+ NC
Sbjct: 1 LSTSLSALPAAARDFVEEAVRLCRPREVLLCDGSEEEGKELLRGLQDDGVLHPLPKYDNC 60
Query: 90 WLASTNPADVARVEDKTFICTVNRSDVVPDHKP-GVKSQLGNWISPADYDEAIKTRFPGC 148
WLA T+P DVARVE KT + T +SD VP P G QLGNW+SP + A++ RFPGC
Sbjct: 61 WLARTDPRDVARVESKTVLVTPEQSDAVPPPPPSGGPPQLGNWMSPNAFQAAVQERFPGC 120
Query: 149 MKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRA 208
M R +YVIPFSMGP SPL+K+GV++TDSPYVV SMRIMTR+G AVL + +D+FVR
Sbjct: 121 MAGRPLYVIPFSMGPPTSPLAKLGVQVTDSPYVVLSMRIMTRVGPAVLQRL--DDDFVRC 178
Query: 209 LHSVGTP-SSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQ 267
LHSVG P WPCDP R ++ H P I S+GSGYGGNSLLGKKCFALRI
Sbjct: 179 LHSVGRPLPLTEPLVSSWPCDPSRVLVAHIPSERRIVSFGSGYGGNSLLGKKCFALRIAS 238
Query: 268 VKEPNN-------RILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320
ILGVT+P G+K ++AAAFPSACGKTNLAM+ P+L W++ CVGDDI
Sbjct: 239 RMAQQQGWLAEHMLILGVTSPSGEKRYMAAAFPSACGKTNLAMMTPSLPGWRIHCVGDDI 298
Query: 321 AWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEG 380
AWMKFD+EG LRAINPE GFFGVAPGTS TNP AM TI NT+FTNVG SD GVYW+G
Sbjct: 299 AWMKFDDEGRLRAINPERGFFGVAPGTSSRTNPNAMATIARNTIFTNVGLRSDGGVYWDG 358
Query: 381 LEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAII 440
L+E T P T WLG+PW P AHPNSRFC PA +CP MDP W P+GVPI AII
Sbjct: 359 LDEPTEPGVTYTSWLGKPWKHGDPEPCAHPNSRFCAPADQCPIMDPRWDDPEGVPIDAII 418
Query: 441 FGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQ 500
FGGRRP GVPLV EAF W+HGVF+G++MRSEATAAAEHKG +++DPFAMRPFFGYN G+
Sbjct: 419 FGGRRPRGVPLVVEAFGWRHGVFMGSAMRSEATAAAEHKGGRLMHDPFAMRPFFGYNAGR 478
Query: 501 YLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRR 560
YL+HWL R N +LP++FHVNWF +D +G+F+WPGFG N RVL WIF R+ G T R
Sbjct: 479 YLEHWLSTGLRSNARLPRLFHVNWFLRDNEGRFVWPGFGHNARVLAWIFGRIQGRDTARP 538
Query: 561 FSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGS 620
+PIG++P ++L L D +LF ++K FWE+E + +Y+ + G+
Sbjct: 539 -TPIGWVPKEGD--LDLGGLPGVD-------YSQLFPMEKGFWEEECRQLREYYGENFGA 588
Query: 621 DLPPAIHAEISGLRQRLK 638
DLP + AE+ GL +R++
Sbjct: 589 DLPRDVMAELEGLEERVR 606
>3moe_A Phosphoenolpyruvate carboxykinase, cytosolic [GTP; gluconeogenesis,
lyase; HET: GTP SPV 1PE; 1.25A {Rattus norvegicus} PDB:
3mof_A* 3moh_A* 3dtb_A* 2qey_A* 2qf1_A* 2qew_A* 2rk7_A
2rk8_A 2rka_A* 2rkd_A 2rke_A 2qf2_A* 3dt2_A* 3dt7_A*
3dt4_A* 1khb_A* 1khe_A* 1khf_A* 1khg_A 1m51_A* ...
Length = 624
Score = 696 bits (1797), Expect = 0.0
Identities = 367/617 (59%), Positives = 453/617 (73%), Gaps = 20/617 (3%)
Query: 30 VHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNC 89
+ G L S+ ++ KF+ +A LC+P+ IHICDG+EEE +L M + +++++K+ NC
Sbjct: 18 IQGSLDSLPQEVRKFVEGNAQLCQPEYIHICDGSEEEYGRLLAHMQEEGVIRKLKKYDNC 77
Query: 90 WLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCM 149
WLA T+P DVAR+E KT I T + D VP K G +SQLG W+S D+++A RFPGCM
Sbjct: 78 WLALTDPRDVARIESKTVIITQEQRDTVPIPKSG-QSQLGRWMSEEDFEKAFNARFPGCM 136
Query: 150 KDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRAL 209
K RTMYVIPFSMGP+GSPL+K+G+E+TDSPYVVASMRIMTRMG +VL+ + + EF++ L
Sbjct: 137 KGRTMYVIPFSMGPLGSPLAKIGIELTDSPYVVASMRIMTRMGTSVLEALG-DGEFIKCL 195
Query: 210 HSVGTP-SSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQV 268
HSVG P +W C+P+ T+I H PD EI S+GSGYGGNSLLGKKCFALRI
Sbjct: 196 HSVGCPLPLKKPLVNNWACNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRIASR 255
Query: 269 KEPNNR-------ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIA 321
ILG+TNPEGKK ++AAAFPSACGKTNLAM+ PTL WKVECVGDDIA
Sbjct: 256 LAKEEGWLAEHMLILGITNPEGKKKYLAAAFPSACGKTNLAMMNPTLPGWKVECVGDDIA 315
Query: 322 WMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGL 381
WMKFD +GNLRAINPE+GFFGVAPGTS TNP A++TI NT+FTNV TSD GVYWEG+
Sbjct: 316 WMKFDAQGNLRAINPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGI 375
Query: 382 EEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIF 441
+E P TI W + W P AHPNSRFC PA++CP +DP W+SP+GVPI IIF
Sbjct: 376 DEPLAPGVTITSWKNKEWRPQDEEPCAHPNSRFCTPASQCPIIDPAWESPEGVPIEGIIF 435
Query: 442 GGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQY 501
GGRRP GVPLVYEA WQHGVFVGA+MRSEATA AEHKGK I++DPFAMRPFFGYNFG+Y
Sbjct: 436 GGRRPAGVPLVYEALSWQHGVFVGAAMRSEATAGAEHKGKVIMHDPFAMRPFFGYNFGKY 495
Query: 502 LQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRF 561
L HWL + RP KLPKIFHVNWFRKDK+GKF+WPGFG+N RVL+W+F R+ G + +
Sbjct: 496 LAHWLSMAHRPAAKLPKIFHVNWFRKDKNGKFLWPGFGENSRVLEWMFGRIEGEDSAKL- 554
Query: 562 SPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSD 621
+PIGY+P +NL L + + ++ELF I K+FWE+E+ I+KY DQV +D
Sbjct: 555 TPIGYVPKEDA--LNLKGLGDVN-------VEELFGISKEFWEKEVEEIDKYLEDQVNAD 605
Query: 622 LPPAIHAEISGLRQRLK 638
LP I E+ L+QR+
Sbjct: 606 LPYEIERELRALKQRIS 622
>2zci_A Phosphoenolpyruvate carboxykinase [GTP], phosphoenolpyruvate;
GTP-dependent, signaling protein, lyase; 2.30A
{Corynebacterium glutamicum}
Length = 610
Score = 685 bits (1769), Expect = 0.0
Identities = 266/621 (42%), Positives = 371/621 (59%), Gaps = 33/621 (5%)
Query: 30 VHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVR--KHV 87
+ G+ + + +LL +I ++ L +P+ + DG++ E + + +V+ T+ ++ K
Sbjct: 9 LQGEAPTKNKELLNWIADAVELFQPEAVVFVDGSQAEWDRMAEDLVEAGTLIKLNEEKRP 68
Query: 88 NCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPG 147
N +LA +NP+DVARVE +TFIC+ D P NW P + + + G
Sbjct: 69 NSYLARSNPSDVARVESRTFICSEKEEDAGP---------TNNWAPPQAMKDEMSKHYAG 119
Query: 148 CMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVR 207
MK RTMYV+PF MGP+ P K+GV++TDS YVV SMRIMTRMG LD+I N FVR
Sbjct: 120 SMKGRTMYVVPFCMGPISDPDPKLGVQLTDSEYVVMSMRIMTRMGIEALDKIGANGSFVR 179
Query: 208 ALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRINQ 267
LHSVG P E WPC+ + I P+T EI SYGSGYGGN++L KKC+ALRI
Sbjct: 180 CLHSVGAPLEPGQEDVAWPCNDTKYIT-QFPETKEIWSYGSGYGGNAILAKKCYALRIAS 238
Query: 268 VKEPNNR-------ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDI 320
V IL + NPEGK +AAAFPSACGKTNLAM+ PT+ W + VGDDI
Sbjct: 239 VMAREEGWMAEHMLILKLINPEGKAYHIAAAFPSACGKTNLAMITPTIPGWTAQVVGDDI 298
Query: 321 AWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIF-HNTMFTNVGTTSDDGVYWE 379
AW+K E+G L A+NPE+GFFGVAPGT+ +NP AM+T+ NT+FTNV T D ++WE
Sbjct: 299 AWLKLREDG-LYAVNPENGFFGVAPGTNYASNPIAMKTMEPGNTLFTNVALTDDGDIWWE 357
Query: 380 GLEEETNPEATIKDWLGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAI 439
G++ + A + DW+G W AAHPNSR+CV + PA P++ +GV I AI
Sbjct: 358 GMDGD--APAHLIDWMGNDWTPESDENAAHPNSRYCVAIDQSPAAAPEFNDWEGVKIDAI 415
Query: 440 IFGGRRPEGVPLVYEAFDWQHGVFVGASMRSEATAA-AEHKGKAILNDPFAMRPFFGYNF 498
+FGGRR + VPLV + +DW+HG VGA + S TAA AE K + +DP AM PF GYN
Sbjct: 416 LFGGRRADTVPLVTQTYDWEHGTMVGALLASGQTAASAEAKVGTLRHDPMAMLPFIGYNA 475
Query: 499 GQYLQHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTV 558
G+YLQ+W+D+ + K+P IF VNWFR+ +DG+F+WPGFGDN RVL W+ R+ G
Sbjct: 476 GEYLQNWIDMGNKGGDKMPSIFLVNWFRRGEDGRFLWPGFGDNSRVLKWVIDRIEG-HVG 534
Query: 559 RRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQV 618
+ +G+ ++L L ++KE + W ++ +Y +
Sbjct: 535 ADETVVGHTAKAED--LDLDGLDTPI-----EDVKEALTAPAEQWANDVEDNAEYL-TFL 586
Query: 619 GSDLPPAIHAEISGLRQRLKS 639
G +P +H++ L+ R+ +
Sbjct: 587 GPRVPAEVHSQFDALKARISA 607
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.3 bits (184), Expect = 4e-14
Identities = 93/693 (13%), Positives = 181/693 (26%), Gaps = 215/693 (31%)
Query: 17 HTSQSNKIGEFDLVHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKK--- 73
H + GE + D+ SV F+ + C ++ K+IL K
Sbjct: 4 HHHMDFETGEHQYQYKDILSVFED--AFV---------DNFD-CKDVQDMPKSILSKEEI 51
Query: 74 ---MVDTNTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGN 130
++ + V + W + ++ + F+ V R +
Sbjct: 52 DHIIMSKDAVSGTLRLF--WTLLSKQEEMV----QKFVEEVLRINY-------------K 92
Query: 131 WISPADYDEAIKTRFPGCMKDRTMY----------VIPFSMGPVGSP-----LSKVGVEI 175
++ IKT MY F+ V L + +E+
Sbjct: 93 FLM-----SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147
Query: 176 TDSPYVVASMRI--MTRMGKAVL-DEIAKNDEFVRALHSVGTPSSGVHEYPHW----PCD 228
+ V+ I + GK + ++ + + + + W C+
Sbjct: 148 RPAKNVL----IDGVLGSGKTWVALDVCLSYKVQCKM------DFKIF----WLNLKNCN 193
Query: 229 PQRTIILH--------KPDTMEIASYGSGYGGNSLLGKKCFALRINQVKEPNNR---IL- 276
T++ P+ + + S + LR +P +L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKPYENCLLVLL 251
Query: 277 GVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAINP 336
V N + AF +C K L+ T + + V D + ++ +
Sbjct: 252 NVQNAK-----AWNAFNLSC-KI----LLTTRF----KQVTDFL---SAATTTHISLDHH 294
Query: 337 ESGFFGVAPGTSCNTNPQAMQTIFHNTMFTN-VGTTSDDGVYWEGLEEE---TNP----- 387
T + + + D L E TNP
Sbjct: 295 SMTL----------TPDEVKS------LLLKYLDCRPQD------LPREVLTTNPRRLSI 332
Query: 388 -EATIKDWLGRPWN--KNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGR 444
+I+D L W+ K+ + + ++P +S +F
Sbjct: 333 IAESIRDGLAT-WDNWKHVNCDKLTTIIESSLNV-----LEPAEYRKMFDRLS--VF--- 381
Query: 445 RPEGVPL---VYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQY 501
P + + W + HK + P
Sbjct: 382 -PPSAHIPTILLSLI-WFDVIKSD----VMVVVNKLHKYSLVEKQPKEST---------I 426
Query: 502 LQHWLDLQKRPNVKLPKIFH---VNWFRKDKDGKFMWPGFGDNIRVLD-WIFQRVNGNKT 557
+ L+ + ++ H V+ + K F LD + +
Sbjct: 427 SIPSIYLELKVKLENEYALHRSIVDHYNIPK--TFDSDDLIPP--YLDQYFYS------- 475
Query: 558 VRRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQ 617
+I +H I + L + ++D F EQ++
Sbjct: 476 --------HIG-HHLKNIEHPERMT---------LFRMVFLDFRFLEQKIRH-------- 509
Query: 618 VGSDLPPAIHAEISGLRQRLKSYHPLWRDSIPK 650
I Q+LK Y P D+ PK
Sbjct: 510 --DSTAWNASGSILNTLQQLKFYKPYICDNDPK 540
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.4 bits (120), Expect = 2e-06
Identities = 75/418 (17%), Positives = 127/418 (30%), Gaps = 108/418 (25%)
Query: 20 QSNKIGEFD-LVHGDLSSVSPKLLK-FITESANLCKPKDIHICDGTEEENKAILKKMVDT 77
Q N F+ L DL L+ I SA + T + K + + ++
Sbjct: 163 QGNTDDYFEELR--DLYQTYHVLVGDLIKFSAETLSE----LIRTTLDAEK-VFTQGLN- 214
Query: 78 NTVKRVRKHVNCWLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADY 137
+ WL NP++ DK ++ ++ S P GV QL +++ A
Sbjct: 215 ---------ILEWL--ENPSNTP---DKDYLLSIPIS--CPLI--GV-IQLAHYVVTA-- 253
Query: 138 DEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLD 197
+ + P + + + V A I
Sbjct: 254 --------------KLLGFTPGELRSYLKGATGHSQGL-----VTAVA-IAETDSWESFF 293
Query: 198 EIAKNDEFVRALHSVGTPSSGVHE-YPHWPCDPQRTIILHKPDTMEIASYGSGYG----- 251
+ + + L +G +E YP+ P IL D++E + G
Sbjct: 294 VSVR--KAITVLFFIGVRC---YEAYPNTSLPPS---ILE--DSLE-----NNEGVPSPM 338
Query: 252 ----GNSLLGKKCFALRINQVKEPNNRI-LGVTNPEGKKMFVAAAFPSACGKTNLAMLMP 306
+ + + + N ++ + + N G K V + P + L L
Sbjct: 339 LSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVN--GAKNLVVSGPPQS-----LYGLNL 391
Query: 307 TLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGV-APGTSCNTNP---QAMQTIFHN 362
TL K G D + + F E R + + F V +P S A I +
Sbjct: 392 TLRKAKAP-SGLDQSRIPFSE----RKLKFSNRFLPVASPFHS----HLLVPASDLINKD 442
Query: 363 TMFTNVGTTSDD---GVY----WEGL-EEETNPEATIKDWLGR-P--WNKNCSTPAAH 409
+ NV + D VY L + I D + R P W A H
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATH 500
Score = 44.7 bits (105), Expect = 9e-05
Identities = 75/506 (14%), Positives = 132/506 (26%), Gaps = 198/506 (39%)
Query: 193 KAVLDEIAKNDEFVRA--LHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGY 250
L E + ++ +H++ + T ++ + I +Y
Sbjct: 85 NLCLTEF--ENCYLEGNDIHAL------AAKLLQ----ENDTTLVKTKEL--IKNY---I 127
Query: 251 GGNSLLGKKCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYD 310
+ + K+ N+ + ++ A F G+
Sbjct: 128 TARIMAKRP-------FDKKSNSALFRAVGEGNAQLV--AIFG---GQ------------ 163
Query: 311 WKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTIFH---NTMFTN 367
G+ + F+E LR + T + + T+
Sbjct: 164 ------GNTDDY--FEE---LRDLY--------------QTYHVLVGDLIKFSAETLSEL 198
Query: 368 VGTTSD-DGVYWEGLEEETNPEATIKDWLGRPWNKN-----CSTPAAHP----------- 410
+ TT D + V+ +GL I +WL P N S P + P
Sbjct: 199 IRTTLDAEKVFTQGLN--------ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYV 250
Query: 411 -------------NSRFC--------VPAAECPAMDPDWQSPQGVPISAIIFGGRRPEGV 449
S + A A W+S AI
Sbjct: 251 VTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-------- 302
Query: 450 PLVYEAFDWQ----HGVFVGASMRSEATAAAEHKGKAILNDPFAM---RPFFGYNFGQYL 502
F + + + S+ + + + P M Q +
Sbjct: 303 -----LF-FIGVRCYEAYPNTSLPPSILEDSLENNEGV---PSPMLSIS---NLTQEQ-V 349
Query: 503 QHWLDLQKRPNVKLPKIFHV-----N-------------------WFRKDKDGKFMWPGF 538
Q +++ + N LP V N RK K P
Sbjct: 350 QDYVN---KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA-----PSG 401
Query: 539 GDNIRVLDWIF-QRVNGNKTVRRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKELFY 597
D R+ F +R K RF P+ P +H + L + K+L
Sbjct: 402 LDQSRIP---FSER--KLKFSNRFLPVA-SP-FH------SHLLVPASDLI---NKDLVK 445
Query: 598 IDKDFWEQELNAIEKY-FNDQVGSDL 622
+ F +++ I Y D GSDL
Sbjct: 446 NNVSFNAKDI-QIPVYDTFD--GSDL 468
Score = 42.0 bits (98), Expect = 6e-04
Identities = 51/316 (16%), Positives = 84/316 (26%), Gaps = 120/316 (37%)
Query: 381 LEEETNPEATIKDWL----------GRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQS 430
L+E K+ + RP++K NS A
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDK-------KSNSAL-FRAVGEGN------- 153
Query: 431 PQGVPISAIIFGGRRPEGVPLVYEAFD-----WQH-GVFVGASMRSEATAAAEHKGKAIL 484
+ AI FGG +G Y F+ +Q V VG ++ A +E ++
Sbjct: 154 ---AQLVAI-FGG---QGNTDDY--FEELRDLYQTYHVLVGDLIKFSAETLSE-----LI 199
Query: 485 NDPFAMRPFFGYNFGQYLQHWL-DLQKRPN--------VKLPKIF-----HVNWFRKDKD 530
F + WL + P+ + P I H K
Sbjct: 200 RTTLDAEKVFTQGLN--ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG 257
Query: 531 ---GKFM------------------------WPGFGDN----IRVLDWIFQRVNGNKTVR 559
G+ W F + I VL +I G +
Sbjct: 258 FTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFI-----GVRCYE 312
Query: 560 RFSPIGYIPDYHHNVINLTDLYEDDK----PNLNVNLKELFYIDKDFWEQELNAIEKYFN 615
+ P L D E+++ P L++ + ++++ N
Sbjct: 313 AYPNTSLPPS------ILEDSLENNEGVPSPMLSI---------SNLTQEQVQDYVNKTN 357
Query: 616 DQVGSDLPPAIHAEIS 631
LP EIS
Sbjct: 358 SH----LPAGKQVEIS 369
Score = 31.2 bits (70), Expect = 1.6
Identities = 54/296 (18%), Positives = 83/296 (28%), Gaps = 105/296 (35%)
Query: 85 KHVNCWLASTNPADVARVEDKTF-ICTVNRSDVVPD-------HKPGVKSQL--GNWIS- 133
+ V W N AD + F I D+V + H G K + N+ +
Sbjct: 1643 QDV--W----NRADNHFKDTYGFSI-----LDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 134 ----PADYDEAIKTRFPGCMKDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMT 189
D + F + T Y F G LS + T P A +
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYT--FR-SEKGL-LSAT--QFT-QP---A---LTL 1738
Query: 190 RMGKAVLDEIAKN-----DEFVRALHSVGTPSSGVHEYPHWPCDPQRTIILHKPDTMEIA 244
M KA +++ D A HS+G EY + D M I
Sbjct: 1739 -MEKAAFEDLKSKGLIPADATF-AGHSLG-------EY---------AALASLADVMSIE 1780
Query: 245 SYGSGYGGNSLLGKKCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFP-SACGKTNLAM 303
S + + V R G + A P G++N M
Sbjct: 1781 S----------------LVEV--VFY---R--------GM--TMQVAVPRDELGRSNYGM 1809
Query: 304 LMPTLYDWKVECVGDDIAWMKFDEEGNLRAINPESGFFGVAPGTSCNTNPQAMQTI 359
+ + +V A E + +G+ V N N + Q +
Sbjct: 1810 IA--INPGRVAASFSQEALQYVVER-----VGKRTGWL-VEI---VNYNVENQQYV 1854
Score = 30.4 bits (68), Expect = 2.4
Identities = 46/296 (15%), Positives = 77/296 (26%), Gaps = 119/296 (40%)
Query: 303 MLMPTLYD--------WK------VECVGDDIAWMKFDEEGNLRAINPESG--FFGVAPG 346
M M LY W + G I + + NP + FG G
Sbjct: 1631 MGM-DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN--------NPVNLTIHFGGEKG 1681
Query: 347 TSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDW------LGRPWN 400
+ I N T D + E + +E N +T + L
Sbjct: 1682 ----------KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
Query: 401 KNCST-PAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFG---GRRPE--------- 447
T PA + E A D +S +P A G G E
Sbjct: 1732 ----TQPA--------LTLMEK-AAFEDLKSKGLIPADATFAGHSLG---EYAALASLAD 1775
Query: 448 ------GVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFG------ 495
V +V+ G+ + ++ + + + AI +P + F
Sbjct: 1776 VMSIESLVEVVF-----YRGMTMQVAVPRDELGRSNYGMIAI--NPGRVAASFSQEALQY 1828
Query: 496 -----------------YNF--GQY-----------LQHWLDLQKRPNVKLPKIFH 521
YN QY + + L+ K + + ++
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQK 1884
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.9 bits (84), Expect = 0.007
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 3/21 (14%)
Query: 629 EISGLRQRLKSYHPLWRDSIP 649
+ L+ LK Y DS P
Sbjct: 21 ALKKLQASLKLYAD---DSAP 38
Score = 28.4 bits (62), Expect = 4.9
Identities = 4/23 (17%), Positives = 9/23 (39%), Gaps = 5/23 (21%)
Query: 328 EGNLRAINPESGFFGVAPGTSCN 350
+ +L+ +S AP +
Sbjct: 26 QASLKLYADDS-----APALAIK 43
Score = 28.0 bits (61), Expect = 5.7
Identities = 6/13 (46%), Positives = 7/13 (53%), Gaps = 1/13 (7%)
Query: 580 LYEDDK-PNLNVN 591
LY DD P L +
Sbjct: 31 LYADDSAPALAIK 43
>3biy_A Histone acetyltransferase P300; P300 HAT, bisubstrate inhibitor,
protein-inhibitor complex; HET: 01K; 1.70A {Homo
sapiens}
Length = 380
Score = 30.6 bits (68), Expect = 1.5
Identities = 11/44 (25%), Positives = 19/44 (43%)
Query: 574 VINLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQ 617
V + D+++ + + KEL Y + DFW L K +
Sbjct: 194 VHDYKDIFKQATEDRLTSAKELPYFEGDFWPNVLEESIKELEQE 237
>1i5p_A Pesticidial crystal protein CRY2AA; helical bundle, beta prism,
lectin-like beta sandwich, jelly roll, toxin; 2.20A
{Bacillus thuringiensis serovarkurstaki} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 633
Score = 30.3 bits (67), Expect = 2.2
Identities = 9/54 (16%), Positives = 26/54 (48%)
Query: 599 DKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYHPLWRDSIPKTN 652
+ + L E++ N ++ +D ++AE+ GL+ ++ ++ + + T
Sbjct: 86 STNLMQDILRETEQFLNQRLNTDTLARVNAELIGLQANIREFNQQVDNFLNPTQ 139
>2ddx_A Beta-1,3-xylanase; glycoside hydrolase, TIM barrel, hydrola; 0.86A
{Vibrio SP}
Length = 333
Score = 30.2 bits (67), Expect = 2.2
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 21/75 (28%)
Query: 517 PKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRR---------------- 560
+ + D D ++ W + W RV N ++
Sbjct: 260 DIVKGFTYINADWDSQWRWAAPYNEG---YWGDSRVQANALIKSNWQQEIAKGQYINHSE 316
Query: 561 --FSPIGYIPDYHHN 573
F +GY +HH+
Sbjct: 317 TLFETLGYGSTHHHH 331
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase,
isomerase; 2.30A {Abies grandis}
Length = 785
Score = 30.2 bits (67), Expect = 2.4
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 556 KTVRRFSPIGYIPDYHHNVINLTDLYEDDKPNLNVNLKEL----FYIDKDFWEQELNAIE 611
K++ R YI +Y + + L N EL F + + EL +
Sbjct: 427 KSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLR 486
Query: 612 KYFND 616
+++
Sbjct: 487 RWWKS 491
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium;
NMR {Staphylococcus saprophyticus subsp}
Length = 110
Score = 28.5 bits (64), Expect = 2.8
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 498 FGQYLQHWLDLQKRPNVK 515
F Y W ++ K P+V
Sbjct: 4 FADYFYQWYEVNKLPHVS 21
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2,
protein structure initiative; NMR {Clostridium leptum
dsm 753}
Length = 108
Score = 27.8 bits (62), Expect = 3.8
Identities = 4/18 (22%), Positives = 9/18 (50%)
Query: 498 FGQYLQHWLDLQKRPNVK 515
FG + + +L ++ V
Sbjct: 4 FGDWAEKFLKSKEADGVS 21
>2kkp_A Phage integrase; SAM-like domain, alpha-helical bundle, structural
genomics, PSI-2, protein structure initiative; NMR
{Moorella thermoacetica atcc 39073}
Length = 117
Score = 28.1 bits (63), Expect = 4.4
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 498 FGQYLQHWLDLQKRPNVK 515
Q+L WL +P+++
Sbjct: 9 VEQWLNRWLTDYAKPHLR 26
>2qkg_A Insecticidal delta-endotoxin CRY8EA1; 2.30A {Bacillus
thuringiensis} PDB: 3eb7_A
Length = 589
Score = 29.0 bits (64), Expect = 5.5
Identities = 11/55 (20%), Positives = 20/55 (36%)
Query: 592 LKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYHPLWRD 646
+ L+ K WE + +E N ++ AE+ GL + Y +
Sbjct: 37 IDVLWPGGKSQWEIFMEQVEALINQKIAEYARAKALAELEGLGNNYQLYLTALEE 91
>1ciy_A Cryia(A); toxin, ICP; 2.25A {Bacillus thuringiensis} SCOP: b.18.1.3
b.77.2.1 f.1.3.1
Length = 590
Score = 29.0 bits (64), Expect = 5.9
Identities = 9/49 (18%), Positives = 18/49 (36%)
Query: 598 IDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYHPLWRD 646
W+ L IE+ N ++ + + GL + Y +R+
Sbjct: 40 FGPSQWDAFLVQIEQLINQRIEEFARNQAISRLEGLSNLYQIYAESFRE 88
>1ji6_A Pesticidial crystal protein CRY3BB; toxin; 2.40A {Bacillus
thuringiensis} SCOP: b.18.1.3 b.77.2.1 f.1.3.1
Length = 589
Score = 29.1 bits (64), Expect = 6.4
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 599 DKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYHPLWRD 646
D D W+ + +E + ++ AE+ GL+ + Y
Sbjct: 40 DADPWKAFMAQVEVLIDKKIEEYAKSKALAELQGLQNNFEDYVNALNS 87
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain,
structural genomics, PSI-2, protein structure
initiative; 2.80A {Lactococcus lactis}
Length = 112
Score = 27.0 bits (60), Expect = 7.6
Identities = 4/18 (22%), Positives = 10/18 (55%)
Query: 498 FGQYLQHWLDLQKRPNVK 515
+Y + W++L K+ +
Sbjct: 8 ISEYFKDWMELYKKNAID 25
>1w99_A Pesticidial crystal protein CRY4BA; membrane pore, BIO-insecticide,
dipteran specificity, conformational change; 1.75A
{Bacillus thuringiensis serovarisraelensis}
Length = 558
Score = 28.3 bits (62), Expect = 8.7
Identities = 5/42 (11%), Positives = 16/42 (38%)
Query: 600 KDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYH 641
+ W + + V + + +A+++ ++ L Y
Sbjct: 3 ERVWNDFMTNTGNLIDQTVTAYVRTDANAKMTVVKDYLDQYT 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.436
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,736,494
Number of extensions: 678356
Number of successful extensions: 1589
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1558
Number of HSP's successfully gapped: 38
Length of query: 652
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 552
Effective length of database: 3,909,693
Effective search space: 2158150536
Effective search space used: 2158150536
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.1 bits)