RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17657
(652 letters)
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 530 bits (1366), Expect = 0.0
Identities = 231/364 (63%), Positives = 278/364 (76%), Gaps = 10/364 (2%)
Query: 275 ILGVTNPEGKKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLRAI 334
+LG+TNPEG+K ++AAAFPSACGKTNLAM+ P+L WKVECVGDDIAWMKFD +G+LRAI
Sbjct: 8 VLGITNPEGEKKYLAAAFPSACGKTNLAMMNPSLPGWKVECVGDDIAWMKFDAQGHLRAI 67
Query: 335 NPESGFFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVYWEGLEEETNPEATIKDW 394
NPE+GFFGVAPGTS TNP A++TI NT+FTNV TSD GVYWEG++E TI W
Sbjct: 68 NPENGFFGVAPGTSVKTNPNAIKTIQKNTIFTNVAETSDGGVYWEGIDEPLASGVTITSW 127
Query: 395 LGRPWNKNCSTPAAHPNSRFCVPAAECPAMDPDWQSPQGVPISAIIFGGRRPEGVPLVYE 454
+ W+ P AHPNSRFC PA++CP +D W+SP+GVPI IIFGGRRP GVPLVYE
Sbjct: 128 KNKEWSSEDGEPCAHPNSRFCTPASQCPIIDAAWESPEGVPIEGIIFGGRRPAGVPLVYE 187
Query: 455 AFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNV 514
A WQHGVFVGA+MRSEATAAAEHKGK I++DPFAMRPFFGYNFG+YL HWL + + P
Sbjct: 188 ALSWQHGVFVGAAMRSEATAAAEHKGKIIMHDPFAMRPFFGYNFGKYLAHWLSMAQHPAA 247
Query: 515 KLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNV 574
KLPKIFHVNWFRKDK+GKF+WPGFG+N RVL+W+F R++G K + +PIGYIP
Sbjct: 248 KLPKIFHVNWFRKDKEGKFLWPGFGENSRVLEWMFNRIDG-KASTKLTPIGYIPKEDA-- 304
Query: 575 INLTDLYEDDKPNLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLR 634
+NL L + + ELF I K+FW++E+ IEKY DQV +DLP I EI L+
Sbjct: 305 LNLKGLGHIN-------MMELFSISKEFWDKEVEDIEKYLVDQVNADLPCEIEREILALK 357
Query: 635 QRLK 638
QR+
Sbjct: 358 QRIS 361
>d1khba2 c.109.1.1 (A:10-259) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 250
Score = 344 bits (884), Expect = e-115
Identities = 137/237 (57%), Positives = 174/237 (73%), Gaps = 3/237 (1%)
Query: 30 VHGDLSSVSPKLLKFITESANLCKPKDIHICDGTEEENKAILKKMVDTNTVKRVRKHVNC 89
V G L S+ + +F+ +A LC+P IHICDG+EEEN +L +M + ++R++K+ NC
Sbjct: 7 VQGSLDSLPQAVREFLENNAELCQPDHIHICDGSEEENGRLLGQMEEEGILRRLKKYDNC 66
Query: 90 WLASTNPADVARVEDKTFICTVNRSDVVPDHKPGVKSQLGNWISPADYDEAIKTRFPGCM 149
WLA T+P DVAR+E KT I T + D VP K G+ SQLG W+S D+++A RFPGCM
Sbjct: 67 WLALTDPRDVARIESKTVIVTQEQRDTVPIPKTGL-SQLGRWMSEEDFEKAFNARFPGCM 125
Query: 150 KDRTMYVIPFSMGPVGSPLSKVGVEITDSPYVVASMRIMTRMGKAVLDEIAKNDEFVRAL 209
K RTMYVIPFSMGP+GSPLSK+G+E+TDSPYVVASMRIMTRMG VL+ + + EFV+ L
Sbjct: 126 KGRTMYVIPFSMGPLGSPLSKIGIELTDSPYVVASMRIMTRMGTPVLEALG-DGEFVKCL 184
Query: 210 HSVGTP-SSGVHEYPHWPCDPQRTIILHKPDTMEIASYGSGYGGNSLLGKKCFALRI 265
HSVG P +WPC+P+ T+I H PD EI S+GSGYGGNSLLGKKCFALR+
Sbjct: 185 HSVGCPLPLQKPLVNNWPCNPELTLIAHLPDRREIISFGSGYGGNSLLGKKCFALRM 241
>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase)
{Trypanosoma cruzi [TaxId: 5693]}
Length = 323
Score = 32.6 bits (74), Expect = 0.12
Identities = 23/98 (23%), Positives = 31/98 (31%), Gaps = 14/98 (14%)
Query: 282 EGKKMFVAAAF-PSACGKTNLAMLMPTLYDWKVECVGDD-IAWMKFDEEGNLRAINPESG 339
GK+ V F S GKT L+ D +GDD W + G N E G
Sbjct: 10 VGKQGDVTVFFGLSGTGKTTLSA------DPHRNLIGDDEHVW---TDRG---VFNIEGG 57
Query: 340 FFGVAPGTSCNTNPQAMQTIFHNTMFTNVGTTSDDGVY 377
+ A G + T + + N G
Sbjct: 58 CYAKAIGLNPKTEKDIYDAVRFGAVAENCVLDKRTGEI 95
>d1d1ja_ d.110.1.1 (A:) Profilin (actin-binding protein) {Human
(Homo sapiens), isoform II [TaxId: 9606]}
Length = 138
Score = 28.8 bits (64), Expect = 1.1
Identities = 11/54 (20%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 252 GNSLLGKKCFALRINQVKEPNNRILGVTNPEGKKMFVAAAFPSACGKTNLAMLM 305
G +L KKC +R + + + + T +G + + A G+ A+++
Sbjct: 62 GLTLGAKKCSVIRDSLYVDGDCTMDIRTKSQGGE----PTYNVAVGRAGRALVI 111
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 28.3 bits (63), Expect = 2.8
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 287 FVAAAFPSACGKTNLAMLMPTLYDWKVECV---GDDIAWMKFDE 327
A P+ GK+ +A L+ LY + G + +
Sbjct: 42 VTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRY 85
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 27.6 bits (60), Expect = 5.0
Identities = 14/132 (10%), Positives = 25/132 (18%)
Query: 443 GRRPEGVPLVYEAFDWQHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYL 502
G+ F +S T A + + P+ G
Sbjct: 34 GQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNY 93
Query: 503 QHWLDLQKRPNVKLPKIFHVNWFRKDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFS 562
R + + D+ + D F R N V
Sbjct: 94 DQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILPRVDSSEMYDRYFPRANSMLRVNHID 153
Query: 563 PIGYIPDYHHNV 574
+ +
Sbjct: 154 TKWFEDTEWYKF 165
>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 553
Score = 27.5 bits (59), Expect = 5.5
Identities = 17/124 (13%), Positives = 37/124 (29%), Gaps = 15/124 (12%)
Query: 527 KDKDGKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVINLTDLYEDDKP 586
+ D +F++ + + W Q F+P + P + +
Sbjct: 413 QRSDHEFLFHYCNAYLNAVRWHPQNSTSIWKAFFFTP-NFNPVGSNGCFATHVCFCFGSY 471
Query: 587 NLNVNLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYHPLWRD 646
+ + LF I KD E+ L PA + + ++
Sbjct: 472 VTHHDPPLLFDISKDPRERN--------------PLTPASEPRFYEILKVMQEAADRHTQ 517
Query: 647 SIPK 650
++P+
Sbjct: 518 TLPE 521
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter
MsbA, C-terminal domain {Salmonella typhimurium [TaxId:
90371]}
Length = 253
Score = 27.1 bits (60), Expect = 6.8
Identities = 12/49 (24%), Positives = 19/49 (38%)
Query: 284 KKMFVAAAFPSACGKTNLAMLMPTLYDWKVECVGDDIAWMKFDEEGNLR 332
VA S GK+ +A L+ YD + D ++ +LR
Sbjct: 40 AGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLR 88
>d1dlca3 f.1.3.1 (A:61-289) delta-Endotoxin (insectocide),
N-terminal domain {Bacillus thuringiensis tenebrionis,
CRYIIIA (BT13) [TaxId: 1444]}
Length = 229
Score = 26.7 bits (59), Expect = 7.0
Identities = 9/51 (17%), Positives = 21/51 (41%)
Query: 591 NLKELFYIDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYH 641
N + +D W+ + +E + ++ AE+ GL+ ++ Y
Sbjct: 34 NFLNTIWPSEDPWKAFMEQVEALMDQKIADYAKNKALAELQGLQNNVEDYV 84
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 27.1 bits (60), Expect = 7.1
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 284 KKMFVAAAFPSACGKTNLAMLMPTLYDW---KVECVGDDIAWMKFDEEGNLRAINPESGF 340
K VA S GK+ L L+P YD ++ G +I N + +
Sbjct: 43 KGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNI 102
Query: 341 F 341
Sbjct: 103 L 103
>d1i5pa3 f.1.3.1 (A:1-263) delta-Endotoxin (insectocide), N-terminal
domain {Bacillus thuringiensis subsp. kurstaki, CRY2AA
[TaxId: 29339]}
Length = 263
Score = 26.8 bits (59), Expect = 7.3
Identities = 8/43 (18%), Positives = 23/43 (53%)
Query: 599 DKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYH 641
+ + L E++ N ++ +D ++AE+ GL+ ++ ++
Sbjct: 86 STNLMQDILRETEQFLNQRLNTDTLARVNAELIGLQANIREFN 128
>d1ciya3 f.1.3.1 (A:33-255) delta-Endotoxin (insectocide),
N-terminal domain {Bacillus thuringiensis, CRYIA (A)
[TaxId: 1428]}
Length = 223
Score = 26.8 bits (59), Expect = 8.2
Identities = 8/44 (18%), Positives = 15/44 (34%)
Query: 598 IDKDFWEQELNAIEKYFNDQVGSDLPPAIHAEISGLRQRLKSYH 641
W+ L IE+ N ++ + + GL + Y
Sbjct: 36 FGPSQWDAFLVQIEQLINQRIEEFARNQAISRLEGLSNLYQIYA 79
>d2fgea4 d.185.1.1 (A:15-271) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 257
Score = 26.8 bits (58), Expect = 8.6
Identities = 22/193 (11%), Positives = 46/193 (23%), Gaps = 23/193 (11%)
Query: 459 QHGVFVGASMRSEATAAAEHKGKAILNDPFAMRPFFGYNFGQYLQHWLDLQKRPNVKLPK 518
QH V G+ E ++ A + + D +V L
Sbjct: 66 QHSVLCGSRKYPVKEPFVELLKGSLHTFLNAFTYPDRTCYPVASTNTKDFYNLVDVYLDA 125
Query: 519 IFHVNWFRKDKD--GKFMWPGFGDNIRVLDWIFQRVNGNKTVRRFSPIGYIPDYHHNVIN 576
+F + D + + V P + ++
Sbjct: 126 VFFPKCVDDAHTFQQEGWHYELNDPSEDISYK-GVVFNEMKGVYSQPDNILGRIAQQALS 184
Query: 577 LTDLYEDDKPNLNVNLKELFYID-KDFW-------------------EQELNAIEKYFND 616
+ Y D ++ L + + K+F L + +Y +
Sbjct: 185 PENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDM 244
Query: 617 QVGSDLPPAIHAE 629
S P + +
Sbjct: 245 FEASPSPNSSKIK 257
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 26.4 bits (58), Expect = 9.1
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 3/38 (7%)
Query: 293 PSACGKTNLAMLMPTLYDWKVECV---GDDIAWMKFDE 327
S GK+ L L+ Y + V G D+A +
Sbjct: 37 RSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNW 74
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.436
Gapped
Lambda K H
0.267 0.0606 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,681,608
Number of extensions: 132859
Number of successful extensions: 368
Number of sequences better than 10.0: 1
Number of HSP's gapped: 363
Number of HSP's successfully gapped: 22
Length of query: 652
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 561
Effective length of database: 1,158,166
Effective search space: 649731126
Effective search space used: 649731126
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)