Query psy17659
Match_columns 195
No_of_seqs 94 out of 96
Neff 2.3
Searched_HMMs 46136
Date Fri Aug 16 19:41:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17659.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17659hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05902 4_1_CTD: 4.1 protein 100.0 6.6E-36 1.4E-40 234.4 9.9 91 70-193 21-113 (114)
2 KOG3527|consensus 100.0 5.1E-31 1.1E-35 256.5 11.0 153 9-193 769-975 (975)
3 KOG3527|consensus 99.2 7.8E-12 1.7E-16 123.5 1.7 75 87-193 690-764 (975)
4 PF05902 4_1_CTD: 4.1 protein 99.0 6.6E-10 1.4E-14 88.0 4.3 66 83-176 27-92 (114)
5 PF10686 DUF2493: Protein of u 54.2 24 0.00051 25.4 3.9 31 151-182 5-35 (71)
6 PRK11121 nrdG anaerobic ribonu 31.9 74 0.0016 25.2 3.8 33 150-183 67-101 (154)
7 PF04475 DUF555: Protein of un 30.9 1E+02 0.0022 24.8 4.4 35 156-192 14-49 (102)
8 PRK05783 hypothetical protein; 29.3 2.5E+02 0.0055 21.2 6.4 47 141-189 33-82 (84)
9 PRK09837 copper/silver efflux 28.2 25 0.00055 31.0 0.7 23 163-185 60-82 (461)
10 PRK10116 universal stress prot 25.7 1.1E+02 0.0024 22.0 3.6 34 150-184 4-37 (142)
11 PRK09915 putative outer membra 24.8 39 0.00084 30.5 1.3 22 163-184 65-86 (488)
12 PF02700 PurS: Phosphoribosylf 24.1 3E+02 0.0064 20.3 6.4 46 141-188 31-76 (80)
13 PF13394 Fer4_14: 4Fe-4S singl 23.4 51 0.0011 23.6 1.4 31 151-182 50-82 (119)
14 PRK11459 multidrug resistance 23.2 33 0.00072 31.1 0.5 22 163-184 63-84 (478)
15 TIGR03884 sel_bind_Methan sele 20.3 1.4E+02 0.0031 22.6 3.3 27 152-181 19-45 (74)
16 PF02406 MmoB_DmpM: MmoB/DmpM 20.1 1E+02 0.0022 23.3 2.5 18 167-184 13-31 (87)
No 1
>PF05902 4_1_CTD: 4.1 protein C-terminal domain (CTD); InterPro: IPR008379 There is a unique sequence domain at the C terminus of all known 4.1 proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24 kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates [].; GO: 0003779 actin binding, 0005198 structural molecule activity, 0005856 cytoskeleton
Probab=100.00 E-value=6.6e-36 Score=234.38 Aligned_cols=91 Identities=38% Similarity=0.546 Sum_probs=72.5
Q ss_pred ccCCCCCCCCCccccceeeeeceEEEeeeEEEeeEE--EEeeeCceeeeEEEeEEEEecCCCcccceeeeeeecceeeEE
Q psy17659 70 IEGSTEPGVEGTEETNVTTTVGEFISSQTISSKTRT--YKTEKDGVVETRVEQKITIQSDSDSVDHDKYKTEKDGVVETR 147 (195)
Q Consensus 70 ~Es~~~~d~~~~~d~~~~l~ssqtITSeT~ss~TtT--tKTvKgGisETRIEKRIvItgD~d~iDHdqa~t~k~gisEtR 147 (195)
+|+++. +.+++.+++ .|.++++|+|++.+++|+| +||||||||||||||||+||||+|
T Consensus 21 ye~~~~-~~~~~~~~g-~l~s~~titSet~sttttT~itKTVKgGisETRIEKRIvITGD~D------------------ 80 (114)
T PF05902_consen 21 YESSQV-DGGTDEDPG-ELVSSQTITSETRSTTTTTHITKTVKGGISETRIEKRIVITGDAD------------------ 80 (114)
T ss_pred eeeccc-cCCCccCCc-eEEecccccccccccceeEEEEEEEeCCceeEEEEEEEEEecCCC------------------
Confidence 344444 455566665 7999999999999888777 677666666666666666665555
Q ss_pred EEEEEEEecCCCCCchhHHHHHHHHHHHhcCCCCceEEEEEeeecc
Q psy17659 148 VEQKITIQSDSDSVDHDKALSDAIMEATAMNPDLKVEKIEIQQQNQ 193 (195)
Q Consensus 148 vEkRIvI~~D~d~iDhd~ala~ai~ea~~~~Pd~~v~ki~v~qe~~ 193 (195)
||||||||+||+||++|||||+|+|++||||++
T Consensus 81 -------------IDhDqaLa~aI~eAk~q~Pdm~Vtkvvv~~ete 113 (114)
T PF05902_consen 81 -------------IDHDQALAQAIKEAKEQHPDMSVTKVVVHQETE 113 (114)
T ss_pred -------------cchHHHHHHHHHHHHHhCCCceEEEEEEEeccc
Confidence 899999999999999999999999999999986
No 2
>KOG3527|consensus
Probab=99.97 E-value=5.1e-31 Score=256.47 Aligned_cols=153 Identities=31% Similarity=0.359 Sum_probs=126.5
Q ss_pred cchhhhhhccCCCcceEEEeeeee-------------------------------------eeeeeeecccccccceeee
Q psy17659 9 TRNIEEKVEDMRSGEVTVSTQVNK-------------------------------------VEEKTVAHTTTTSGLRQEQ 51 (195)
Q Consensus 9 t~n~ee~v~~~~~g~v~~st~~~k-------------------------------------~eekt~~~t~t~s~~rqeq 51 (195)
-..-|+.+.+++.|+++.+++.++ +|+++|+.+-+-....|-|
T Consensus 769 efepe~~~~~~~~~~~~~ts~~~~~~~~~td~~g~~it~t~~ss~~~~t~q~~~~~~~~~~~dq~~v~~~~~~~~~~q~~ 848 (975)
T KOG3527|consen 769 EFEPESGQPYTTVSTWQETSDLPEQVEVYTDENGRQITRTVKSSQVKHTVQTQSFQNYIVDGDQVPVGVVDVERSREQLT 848 (975)
T ss_pred ccCccccCccccceeeeecccccccccccccCCCceEEEEEeeeeeeeeeecccccceeecccceeeeeeeccCchhhhh
Confidence 344588899999999999999887 5999999999999999999
Q ss_pred eeeeeeeeeeeeeecCCCc-------------c-C---CCCCCCCCccccceeeeeceEEEeeeEEEeeEEEEeeeCcee
Q psy17659 52 RTVTQEVRATSTILADNNI-------------E-G---STEPGVEGTEETNVTTTVGEFISSQTISSKTRTYKTEKDGVV 114 (195)
Q Consensus 52 r~vtqev~~t~t~~~~~~~-------------E-s---~~~~d~~~~~d~~~~l~ssqtITSeT~ss~TtTtKTvKgGis 114 (195)
|+++|++++|++.+.+.+. + + ..++++.+. +.-|.+.|++++|+.+++.+|+||||
T Consensus 849 ~~~~k~~~stss~~~~~e~~~i~~t~~~t~~~~~~~~~~~~~~~~~~-~g~ge~vssksvt~~~rtietitykt------ 921 (975)
T KOG3527|consen 849 PLGQKASSSTSSDVQNGENGGIVETQTRTMTYEAQGGENSAPPGWAE-EGLGEYVSSKSVTQGNRTIETITYKT------ 921 (975)
T ss_pred hhhhhhcccccccccCCccCCeeEeeccccceeccCceecCCCCccc-cCcceeeeeeeeccCceeEEEEEeec------
Confidence 9999999999988877754 1 1 112223222 33347778888888888777777666
Q ss_pred eeEEEeEEEEecCCCcccceeeeeeecceeeEEEEEEEEEecCCCCCchhHHHHHHHHHHHhcCCCCceEEEEEeeecc
Q psy17659 115 ETRVEQKITIQSDSDSVDHDKYKTEKDGVVETRVEQKITIQSDSDSVDHDKALSDAIMEATAMNPDLKVEKIEIQQQNQ 193 (195)
Q Consensus 115 ETRIEKRIvItgD~d~iDHdqa~t~k~gisEtRvEkRIvI~~D~d~iDhd~ala~ai~ea~~~~Pd~~v~ki~v~qe~~ 193 (195)
+|+||+|||||+||+||+|+| ||||++||+||+||++|||||.|+||+|+||++
T Consensus 922 ------------------------ekdgivet~ve~rvti~sdgd-idhd~~lsqai~eat~mnpdm~vekiev~qet~ 975 (975)
T KOG3527|consen 922 ------------------------EKDGIVETHVEHRVTIHSDGD-IDHDAELSQAILEATQMNPDMVVEKIEVRQETT 975 (975)
T ss_pred ------------------------ccCcceeeeeeeeEEeccCCC-ccchHHHHHHHHHHhccCCcceEEEEeeeeccC
Confidence 668888888999999999999 999999999999999999999999999999985
No 3
>KOG3527|consensus
Probab=99.16 E-value=7.8e-12 Score=123.55 Aligned_cols=75 Identities=21% Similarity=0.228 Sum_probs=55.7
Q ss_pred eeeeceEEEeeeEEEeeEEEEeeeCceeeeEEEeEEEEecCCCcccceeeeeeecceeeEEEEEEEEEecCCCCCchhHH
Q psy17659 87 TTTVGEFISSQTISSKTRTYKTEKDGVVETRVEQKITIQSDSDSVDHDKYKTEKDGVVETRVEQKITIQSDSDSVDHDKA 166 (195)
Q Consensus 87 ~l~ssqtITSeT~ss~TtTtKTvKgGisETRIEKRIvItgD~d~iDHdqa~t~k~gisEtRvEkRIvI~~D~d~iDhd~a 166 (195)
.+..+.++++++.+++| +++++|||+|||||||||+|+||.| +|||++
T Consensus 690 t~tts~t~t~s~~st~T-~tdtv~ggmSetrikk~~litgd~d-------------------------------~Dksnk 737 (975)
T KOG3527|consen 690 TLTTSRTQTQSMFSTPT-TTDTVPGGMSETRIKKRILITGDFD-------------------------------RDKSNK 737 (975)
T ss_pred cccccccchhhccCCcc-ccccccCcccccchhceeeeccccc-------------------------------cchhhH
Confidence 46666666665555444 4566666666666665555555544 889999
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeeecc
Q psy17659 167 LSDAIMEATAMNPDLKVEKIEIQQQNQ 193 (195)
Q Consensus 167 la~ai~ea~~~~Pd~~v~ki~v~qe~~ 193 (195)
|+.||++|++++|+|.+++.+++++++
T Consensus 738 laka~rkk~eneps~ets~s~~~ek~E 764 (975)
T KOG3527|consen 738 KDKKKRKKGENETSGETSDSEHDEKRE 764 (975)
T ss_pred HHHHhhhhccCCCCcccccccchhhhh
Confidence 999999999999999999999998764
No 4
>PF05902 4_1_CTD: 4.1 protein C-terminal domain (CTD); InterPro: IPR008379 There is a unique sequence domain at the C terminus of all known 4.1 proteins, known as the C-terminal domain (CTD). Mammalian CTDs are associated with a growing number of protein-protein interactions, although such activities have yet to be associated with invertebrate CTDs. Mammalian CTDs are generally defined by sequence alignment as encoded by exons 18-21. Comparison of known vertebrate 4.1 proteins with invertebrate 4.1 proteins indicates that mammalian 4.1 exon 19 represents a vertebrate adaptation that extends the sequence of the CTD with a Ser/Thr-rich sequence. The CTD was first described as a 22/24 kDa domain by chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is thought to represent an independent folding structure which has gained function since the divergence of vertebrates from invertebrates [].; GO: 0003779 actin binding, 0005198 structural molecule activity, 0005856 cytoskeleton
Probab=98.95 E-value=6.6e-10 Score=88.00 Aligned_cols=66 Identities=39% Similarity=0.530 Sum_probs=56.2
Q ss_pred ccceeeeeceEEEeeeEEEeeEEEEeeeCceeeeEEEeEEEEecCCCcccceeeeeeecceeeEEEEEEEEEecCCCCCc
Q psy17659 83 ETNVTTTVGEFISSQTISSKTRTYKTEKDGVVETRVEQKITIQSDSDSVDHDKYKTEKDGVVETRVEQKITIQSDSDSVD 162 (195)
Q Consensus 83 d~~~~l~ssqtITSeT~ss~TtTtKTvKgGisETRIEKRIvItgD~d~iDHdqa~t~k~gisEtRvEkRIvI~~D~d~iD 162 (195)
+.++...++.+++++++++++.++.| +.|.. |++|||+|||||||||+|+| |
T Consensus 27 ~~~~~~~~g~l~s~~titSet~sttt----------------------tT~it-KTVKgGisETRIEKRIvITG-----D 78 (114)
T PF05902_consen 27 DGGTDEDPGELVSSQTITSETRSTTT----------------------TTHIT-KTVKGGISETRIEKRIVITG-----D 78 (114)
T ss_pred cCCCccCCceEEecccccccccccce----------------------eEEEE-EEEeCCceeEEEEEEEEEec-----C
Confidence 56777889999999999999988667 67774 99999999999999999996 7
Q ss_pred hhHHHHHHHHHHHh
Q psy17659 163 HDKALSDAIMEATA 176 (195)
Q Consensus 163 hd~ala~ai~ea~~ 176 (195)
-|--.=+|+.+|-.
T Consensus 79 ~DIDhDqaLa~aI~ 92 (114)
T PF05902_consen 79 ADIDHDQALAQAIK 92 (114)
T ss_pred CCcchHHHHHHHHH
Confidence 77666778777744
No 5
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=54.20 E-value=24 Score=25.39 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=19.1
Q ss_pred EEEEecCCCCCchhHHHHHHHHHHHhcCCCCc
Q psy17659 151 KITIQSDSDSVDHDKALSDAIMEATAMNPDLK 182 (195)
Q Consensus 151 RIvI~~D~d~iDhd~ala~ai~ea~~~~Pd~~ 182 (195)
||+|.|--+--||.. +-.++..+.+.+|+|.
T Consensus 5 rVli~GgR~~~D~~~-i~~~Ld~~~~~~~~~~ 35 (71)
T PF10686_consen 5 RVLITGGRDWTDHEL-IWAALDKVHARHPDMV 35 (71)
T ss_pred EEEEEECCccccHHH-HHHHHHHHHHhCCCEE
Confidence 666777666334443 5566666667777765
No 6
>PRK11121 nrdG anaerobic ribonucleotide reductase-activating protein; Provisional
Probab=31.88 E-value=74 Score=25.16 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=26.9
Q ss_pred EEEEEecCCCCCchh--HHHHHHHHHHHhcCCCCce
Q psy17659 150 QKITIQSDSDSVDHD--KALSDAIMEATAMNPDLKV 183 (195)
Q Consensus 150 kRIvI~~D~d~iDhd--~ala~ai~ea~~~~Pd~~v 183 (195)
..|+|.|- +|..|. ++|.+.++.+++..|++.|
T Consensus 67 ~gvt~sGG-EPl~~~~~~~l~~l~~~~k~~~~~~~i 101 (154)
T PRK11121 67 QGLSLSGG-DPLHPQNVPDILKLVQRVKAECPGKDI 101 (154)
T ss_pred CcEEEECC-CccchhhHHHHHHHHHHHHHHCCCCCE
Confidence 35889876 689866 8899999999999888765
No 7
>PF04475 DUF555: Protein of unknown function (DUF555); InterPro: IPR007564 This is a family of uncharacterised, hypothetical archaeal proteins.
Probab=30.90 E-value=1e+02 Score=24.75 Aligned_cols=35 Identities=37% Similarity=0.492 Sum_probs=27.9
Q ss_pred cCCCCCchhHHHHHHHHHH-HhcCCCCceEEEEEeeec
Q psy17659 156 SDSDSVDHDKALSDAIMEA-TAMNPDLKVEKIEIQQQN 192 (195)
Q Consensus 156 ~D~d~iDhd~ala~ai~ea-~~~~Pd~~v~ki~v~qe~ 192 (195)
.|.+ +-|.|+.-||.|| +..||+|.--.|++..-.
T Consensus 14 ~dv~--s~dDAI~iAIseaGkrLn~~~~~VeIevG~~~ 49 (102)
T PF04475_consen 14 RDVE--SVDDAIGIAISEAGKRLNPDLDYVEIEVGDTI 49 (102)
T ss_pred ecCC--cHHHHHHHHHHHHHHhhCCCCCeEEEecCccc
Confidence 4554 5678999999999 778999999888886543
No 8
>PRK05783 hypothetical protein; Provisional
Probab=29.33 E-value=2.5e+02 Score=21.21 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=33.7
Q ss_pred cceeeEEEEEEEEEecCCCCCchhHHHHHHHHHHHhc---CCCCceEEEEEe
Q psy17659 141 DGVVETRVEQKITIQSDSDSVDHDKALSDAIMEATAM---NPDLKVEKIEIQ 189 (195)
Q Consensus 141 ~gisEtRvEkRIvI~~D~d~iDhd~ala~ai~ea~~~---~Pd~~v~ki~v~ 189 (195)
+++.+-|+=|.|.+.=|++ |.+.|..++-.-|... ||-+.--.|.+.
T Consensus 33 ~~V~~VRvGK~iel~l~~~--~~e~a~~~v~~mc~~LrLaNpVIe~y~i~~~ 82 (84)
T PRK05783 33 GNIIEVRAGKYLVFKIEAN--SPEEAKELALKIAREGRLYNPIVHKIVVRVR 82 (84)
T ss_pred CCcceEEeeEEEEEEEcCC--CHHHHHHHHHHHHHhcCcCCceeEEEEEEEE
Confidence 5688999999999998876 6677777777777665 665544444443
No 9
>PRK09837 copper/silver efflux system outer membrane protein CusC; Provisional
Probab=28.16 E-value=25 Score=31.05 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHhcCCCCceEE
Q psy17659 163 HDKALSDAIMEATAMNPDLKVEK 185 (195)
Q Consensus 163 hd~ala~ai~ea~~~~Pd~~v~k 185 (195)
+|+.|-++|.+|-+.|||+..-+
T Consensus 60 ~dp~L~~li~~AL~~Np~l~~A~ 82 (461)
T PRK09837 60 VDNQVKTLISEALVNNRDLRMAT 82 (461)
T ss_pred CCHHHHHHHHHHHhcCHHHHHHH
Confidence 68999999999999999987643
No 10
>PRK10116 universal stress protein UspC; Provisional
Probab=25.72 E-value=1.1e+02 Score=22.04 Aligned_cols=34 Identities=15% Similarity=0.218 Sum_probs=26.0
Q ss_pred EEEEEecCCCCCchhHHHHHHHHHHHhcCCCCceE
Q psy17659 150 QKITIQSDSDSVDHDKALSDAIMEATAMNPDLKVE 184 (195)
Q Consensus 150 kRIvI~~D~d~iDhd~ala~ai~ea~~~~Pd~~v~ 184 (195)
++|.+--|.+ -+.+++|..|+..|++++..+.+-
T Consensus 4 ~~ILv~~D~s-~~s~~al~~A~~lA~~~~a~l~ll 37 (142)
T PRK10116 4 SNILVAVAVT-PESQQLLAKAVSIARPVNGKISLI 37 (142)
T ss_pred ceEEEEccCC-cchHHHHHHHHHHHHHhCCEEEEE
Confidence 5777777776 577889999999998877665554
No 11
>PRK09915 putative outer membrane efflux protein MdtP; Provisional
Probab=24.85 E-value=39 Score=30.48 Aligned_cols=22 Identities=18% Similarity=0.152 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHhcCCCCceE
Q psy17659 163 HDKALSDAIMEATAMNPDLKVE 184 (195)
Q Consensus 163 hd~ala~ai~ea~~~~Pd~~v~ 184 (195)
||+.|-++|..|.+.|||+..-
T Consensus 65 ~Dp~L~~li~~Al~~Np~l~~A 86 (488)
T PRK09915 65 NDPQLDALIQRTLSGSHTLAEA 86 (488)
T ss_pred CCHhHHHHHHHHHhcCccHHHH
Confidence 7999999999999999998753
No 12
>PF02700 PurS: Phosphoribosylformylglycinamidine (FGAM) synthase; InterPro: IPR003850 Phosphoribosylformylglycinamidine(FGAM) synthetase, 6.3.5.3 from EC, catalyses the fourth step in the de novo purine biosynthetic pathway []. 5-phosphoribosylformylglycinamide (FGAR) + glutamine + ATP = FGAM + glutamate + ADP + Pi In eukaryotes and many bacterial systems (including Escherichia coli and Salmonella typhimurium), the FGAM synthetase is encoded by the large form of PurL (lgPurL), which contains an N-terminal ATPase domain and a C-terminal glutamine-binding domain. In archaeal and other bacterial systems, however, FGAM synthetase is encoded by separate genes, making it a multisubunit (rather than multidomain) enzyme. The protein is composed of the small form of PurL (smPurL), which is homologus to the ATPase domain of lgPurL, PurQ which is homologous to the glutamine-binding domain of of lgPurL, and PurS, whose function is not known. This entry represents the PurS subunit of the multisubunit FGAM synthetase. Recent studies showed that disruption of the purS gene in Bacillus subtilis resulted in a purine auxotrophic phenotype, due to defective FGAM synthetase activity. Therefore, the PurS protein appears to be required for the function of the PurL and PurQ subunits of the FGAM synthetase, but the molecular mechanism for the functional role of PurS is currently not known. For additional information please see [, ].; GO: 0016879 ligase activity, forming carbon-nitrogen bonds; PDB: 2ZW2_B 3D54_B 1VQ3_B 1GTD_A 2YX5_A 2CUW_A 1TWJ_B 1T4A_B 2DGB_B.
Probab=24.13 E-value=3e+02 Score=20.27 Aligned_cols=46 Identities=26% Similarity=0.378 Sum_probs=31.0
Q ss_pred cceeeEEEEEEEEEecCCCCCchhHHHHHHHHHHHhcCCCCceEEEEE
Q psy17659 141 DGVVETRVEQKITIQSDSDSVDHDKALSDAIMEATAMNPDLKVEKIEI 188 (195)
Q Consensus 141 ~gisEtRvEkRIvI~~D~d~iDhd~ala~ai~ea~~~~Pd~~v~ki~v 188 (195)
.++..-|+=|.+.|..|++ |.+.|..++=.-|...--+.-++.+.|
T Consensus 31 ~~v~~Vr~GK~~~l~~~~~--~~e~a~~~v~~i~~~LLaNpvie~y~i 76 (80)
T PF02700_consen 31 DGVKDVRVGKYIELELEAD--DEEEAEEQVEEICEKLLANPVIEDYEI 76 (80)
T ss_dssp TTEEEEEEEEEEEEEEE-S--SHHHHHHHHHHHHHHTTS-TTTEEEEE
T ss_pred cccCcEEEEEEEEEEEeCC--CHHHHHHHHHHHHHHhcCCCceEEEEE
Confidence 4578999999999999987 777777776666666533334444443
No 13
>PF13394 Fer4_14: 4Fe-4S single cluster domain; PDB: 1TV8_B 1TV7_A 2FB2_A 2FB3_A.
Probab=23.37 E-value=51 Score=23.57 Aligned_cols=31 Identities=13% Similarity=0.262 Sum_probs=16.0
Q ss_pred EEEEecCCCCC--chhHHHHHHHHHHHhcCCCCc
Q psy17659 151 KITIQSDSDSV--DHDKALSDAIMEATAMNPDLK 182 (195)
Q Consensus 151 RIvI~~D~d~i--Dhd~ala~ai~ea~~~~Pd~~ 182 (195)
.|+|+| ++|. =+-+.|...|..+++.+|+..
T Consensus 50 ~v~~~G-GEPll~~~~~~l~~~i~~~~~~~~~~~ 82 (119)
T PF13394_consen 50 TVVFTG-GEPLLYLNPEDLIELIEYLKERGPEIK 82 (119)
T ss_dssp EEEEES-SSGGGSTTHHHHHHHHCTSTT-----E
T ss_pred EEEEEC-CCCccccCHHHHHHHHHHHHhhCCCce
Confidence 467777 6666 234556666666666666533
No 14
>PRK11459 multidrug resistance outer membrane protein MdtQ; Provisional
Probab=23.16 E-value=33 Score=31.08 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHhcCCCCceE
Q psy17659 163 HDKALSDAIMEATAMNPDLKVE 184 (195)
Q Consensus 163 hd~ala~ai~ea~~~~Pd~~v~ 184 (195)
||+.|-++|.+|.+.|||+.+-
T Consensus 63 ~Dp~L~~lI~~Al~~Np~l~~A 84 (478)
T PRK11459 63 HDNQLDSLINNALQNAPDMQVA 84 (478)
T ss_pred CChhHHHHHHHHHhcCHHHHHH
Confidence 7999999999999999998754
No 15
>TIGR03884 sel_bind_Methan selenium-binding protein. This model describes a homopentameric selenium-binding protein with a suggested role in selenium transport and delivery to selenophosphate synthase, the SelD protein. This protein family is closely related to pfam01906, but is shorter because of several deleted regions. It is restricted to the archaeal genus Methanococcus.
Probab=20.33 E-value=1.4e+02 Score=22.60 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=21.9
Q ss_pred EEEecCCCCCchhHHHHHHHHHHHhcCCCC
Q psy17659 152 ITIQSDSDSVDHDKALSDAIMEATAMNPDL 181 (195)
Q Consensus 152 IvI~~D~d~iDhd~ala~ai~ea~~~~Pd~ 181 (195)
||+ +.+| |-|+||...+.+|+++.-|-
T Consensus 19 iv~-~~~~--d~d~Al~eM~e~A~~lGAnA 45 (74)
T TIGR03884 19 IVS-TESD--NVDEIVENLREKVKAKGGMG 45 (74)
T ss_pred EEE-EecC--CHHHHHHHHHHHHHHcCCCE
Confidence 444 6666 89999999999999997764
No 16
>PF02406 MmoB_DmpM: MmoB/DmpM family ; InterPro: IPR003454 This family consists of monooxygenase components such as MmoB methane monooxygenase (1.14.13.25 from EC) regulatory protein B. When MmoB is present at low concentration it converts methane monooxygenase from an oxidase to a hydroxylase and stabilises intermediates required for the activation of dioxygen []. Also found in this family is DmpM or Phenol hydroxylase (1.14.13.7 from EC) protein component P2, this protein lacks redox co-factors and is required for optimal turnover of Phenol hydroxylase []. Phenol hydroxylase catabolises phenol and some of its methylated derivatives in the first step of phenol biodegradation, and is required for growth on phenol. The multicomponent enzyme is made up of P0, P1, P2, P3, P4 and P5 polypeptides.; GO: 0004497 monooxygenase activity, 0006725 cellular aromatic compound metabolic process; PDB: 2INN_L 2INP_L 1CKV_A 3Q3M_H 3GE3_E 1G11_A 2BF2_B 3I5J_E 3Q3O_E 3I63_E ....
Probab=20.10 E-value=1e+02 Score=23.34 Aligned_cols=18 Identities=44% Similarity=0.553 Sum_probs=14.2
Q ss_pred HHHHHHHHHhc-CCCCceE
Q psy17659 167 LSDAIMEATAM-NPDLKVE 184 (195)
Q Consensus 167 la~ai~ea~~~-~Pd~~v~ 184 (195)
.+.||-||-.+ ||+..|+
T Consensus 13 e~~~iveai~~dNP~v~V~ 31 (87)
T PF02406_consen 13 EARAIVEAIEEDNPGVTVE 31 (87)
T ss_dssp HHHHHHHHHHHHSSTEEEE
T ss_pred HHHHHHHHHHhhCCCeEEE
Confidence 48888888777 9997665
Done!