Query psy17659
Match_columns 195
No_of_seqs 94 out of 96
Neff 2.3
Searched_HMMs 29240
Date Fri Aug 16 19:42:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17659.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17659hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1p3q_Q VPS9P, vacuolar protein 33.5 28 0.00095 23.7 2.5 21 163-183 8-28 (54)
2 1vq3_A Phosphoribosylformylgly 16.9 3.1E+02 0.011 19.9 6.1 44 141-188 46-91 (94)
3 1mwp_A Amyloid A4 protein; hep 15.8 1E+02 0.0035 23.1 2.8 21 168-188 40-60 (96)
4 3f6g_B Alpha-isopropylmalate s 14.8 1.8E+02 0.006 21.6 3.9 35 150-189 31-68 (127)
5 2w42_A PIWI, putative uncharac 13.6 3E+02 0.01 24.1 5.6 40 150-191 249-295 (427)
6 4exr_A Putative lipoprotein; Y 11.6 2.4E+02 0.0081 22.0 3.9 25 167-191 34-58 (174)
7 1gtd_A MTH169; synthetase, FGA 10.8 4.2E+02 0.014 18.2 6.8 45 142-188 33-79 (85)
8 2dfa_A Hypothetical UPF0271 pr 10.8 1.4E+02 0.0049 25.5 2.6 21 163-183 120-141 (250)
9 3ktm_A Amyloid beta A4 protein 10.7 1.7E+02 0.0057 24.5 2.9 21 168-188 51-71 (191)
10 1v6t_A Hypothetical UPF0271 pr 10.4 1.5E+02 0.0051 25.5 2.6 22 162-183 119-141 (255)
No 1
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=33.51 E-value=28 Score=23.74 Aligned_cols=21 Identities=19% Similarity=0.336 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHhcCCCCce
Q psy17659 163 HDKALSDAIMEATAMNPDLKV 183 (195)
Q Consensus 163 hd~ala~ai~ea~~~~Pd~~v 183 (195)
+.+...++++.-+.|||+|--
T Consensus 8 ~~~e~~~~~~~L~~MFP~lD~ 28 (54)
T 1p3q_Q 8 EENERKDTLNTLQNMFPDMDP 28 (54)
T ss_dssp HHHHHHHHHHHHHHHSTTSCH
T ss_pred HHHHHHHHHHHHHHHcccCCH
Confidence 345678899999999999853
No 2
>1vq3_A Phosphoribosylformylglycinamidine synthase, PURS; TM1244, PURS SUB 6.3.5.3), structural genomics, joint center for structural JCSG; 1.90A {Thermotoga maritima} SCOP: d.284.1.1 PDB: 3d54_B*
Probab=16.91 E-value=3.1e+02 Score=19.93 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=27.8
Q ss_pred cceeeEEEEEEEEEecCCCCCchhHHHHHHHHHHHhc--CCCCceEEEEE
Q psy17659 141 DGVVETRVEQKITIQSDSDSVDHDKALSDAIMEATAM--NPDLKVEKIEI 188 (195)
Q Consensus 141 ~gisEtRvEkRIvI~~D~d~iDhd~ala~ai~ea~~~--~Pd~~v~ki~v 188 (195)
.|+...|+-|++.+..|++ |-+.|.+++=.-|... ||- ++.+.|
T Consensus 46 ~~V~~VR~GK~~el~~~~~--~~~~a~~~v~~mc~kLLaNpV--IE~y~i 91 (94)
T 1vq3_A 46 LPVKKLRLGKSIHLEVEAE--NKEKAYEIVKKACEELLVNPV--VEEYEV 91 (94)
T ss_dssp CCEEEEEEEEEEEEEEECS--SHHHHHHHHHHHHHHTTSCTT--TEEEEE
T ss_pred CccceeeeeeEEEEEecCC--CHHHHHHHHHHHHHHHcCCCc--ceEEEE
Confidence 4688999999999999876 4444444443444444 664 444443
No 3
>1mwp_A Amyloid A4 protein; heparin binding, sugar binding protein; 1.80A {Homo sapiens} SCOP: d.170.2.1
Probab=15.79 E-value=1e+02 Score=23.11 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCCceEEEEE
Q psy17659 168 SDAIMEATAMNPDLKVEKIEI 188 (195)
Q Consensus 168 a~ai~ea~~~~Pd~~v~ki~v 188 (195)
-+.++-+++++|++.|+.|+=
T Consensus 40 ~eIL~YCrkvYP~l~ItnVve 60 (96)
T 1mwp_A 40 EGILQYCQEVYPELQITNVVE 60 (96)
T ss_dssp HHHHHHHHHHSTTSCEEEEEE
T ss_pred HHHHHHHHHHCCCCccceeEe
Confidence 467788999999999999863
No 4
>3f6g_B Alpha-isopropylmalate synthase; licmsc, allosteric regulation, feedback inhibition, selectivity, specificity, transferase; 2.00A {Leptospira interrogans} PDB: 3f6h_A
Probab=14.77 E-value=1.8e+02 Score=21.60 Aligned_cols=35 Identities=23% Similarity=0.222 Sum_probs=24.3
Q ss_pred EEEEEecCCCCCchhHHHHHHHHHHHhcCC---CCceEEEEEe
Q psy17659 150 QKITIQSDSDSVDHDKALSDAIMEATAMNP---DLKVEKIEIQ 189 (195)
Q Consensus 150 kRIvI~~D~d~iDhd~ala~ai~ea~~~~P---d~~v~ki~v~ 189 (195)
....=.|++ ||| |+..||+.+... | ++.+..+.+|
T Consensus 31 ~~~~a~GnG-PVd---A~~~Al~~~~~~-~~~~~~~L~dY~v~ 68 (127)
T 3f6g_B 31 HKEISEGDG-GYD---AFMNALTKITNR-LGISIPKLIDYEVR 68 (127)
T ss_dssp EEEEEECSS-HHH---HHHHHHHHHHHH-HTCCCCEEEEEEEE
T ss_pred EEEEEEccC-HHH---HHHHHHHHHhCc-cccCceEEEEEEEE
Confidence 344556776 787 888888877654 5 7777777665
No 5
>2w42_A PIWI, putative uncharacterized protein; RNAI, RISC, argonaute, PIWI domain, protein/DNA complex; 1.90A {Archaeoglobus fulgidus} PDB: 1ytu_A 2bgg_A 1w9h_A
Probab=13.57 E-value=3e+02 Score=24.11 Aligned_cols=40 Identities=8% Similarity=0.234 Sum_probs=23.5
Q ss_pred EEEEEecCCCCCchhHHHHHHHHHHHhc-------CCCCceEEEEEeee
Q psy17659 150 QKITIQSDSDSVDHDKALSDAIMEATAM-------NPDLKVEKIEIQQQ 191 (195)
Q Consensus 150 kRIvI~~D~d~iDhd~ala~ai~ea~~~-------~Pd~~v~ki~v~qe 191 (195)
.||+|||.-..+-.+. ..+|++|-.. +.+..++=|+|++.
T Consensus 249 ~rIii~gq~~~v~~~E--i~~i~~a~~~~~~~~~~~~~~~l~~IvV~Kr 295 (427)
T 2w42_A 249 LTLHVSGKRPKMKDGE--TKILKETVEELKKQEMVSRDVKYAILHLNET 295 (427)
T ss_dssp EEEEEESSCCSCHHHH--HHHHHHHHHHHHHTTSSCTTCEEEEEEEEEC
T ss_pred eEEEEEeecccccHHH--HHHHHHHHHHhccccccCCCCCEEEEEEEcc
Confidence 4889999665574443 3345544332 44556666777664
No 6
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=11.56 E-value=2.4e+02 Score=21.97 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCCCceEEEEEeee
Q psy17659 167 LSDAIMEATAMNPDLKVEKIEIQQQ 191 (195)
Q Consensus 167 la~ai~ea~~~~Pd~~v~ki~v~qe 191 (195)
+.+|+.-|.+.+|+-.|.+|+.-.+
T Consensus 34 ~e~A~~~a~~~~pga~I~~iele~~ 58 (174)
T 4exr_A 34 YTDAINIFKDKYKDADIVDLSLERD 58 (174)
T ss_dssp HHHHHHHHHHHSTTCEEEEEEEEEE
T ss_pred HHHHHHHHHHHCCCCEEEEEEEEEe
Confidence 4567777778899988988887654
No 7
>1gtd_A MTH169; synthetase, FGAM synthetase, purine synthesis pathway, PSI, protein structure initiative, NESG; 2.56A {Methanobacterium thermoautotrophicum} SCOP: d.284.1.1
Probab=10.81 E-value=4.2e+02 Score=18.21 Aligned_cols=45 Identities=20% Similarity=0.199 Sum_probs=29.3
Q ss_pred ceeeEEEEEEEEEecCCCCCchhHHHHHHHHHHHh--cCCCCceEEEEE
Q psy17659 142 GVVETRVEQKITIQSDSDSVDHDKALSDAIMEATA--MNPDLKVEKIEI 188 (195)
Q Consensus 142 gisEtRvEkRIvI~~D~d~iDhd~ala~ai~ea~~--~~Pd~~v~ki~v 188 (195)
++.+-|+-|++.+..|++ |.+.|.+++=.-|.. -||-+.--.+++
T Consensus 33 ~v~~VR~gK~~~l~~~~~--~~~~a~~~v~~~~~~LLaNpVie~~~~~~ 79 (85)
T 1gtd_A 33 EVEDTDTTDVITFTMDED--SLEAVEREVEDMCQRLLCNPVIHDYDVSI 79 (85)
T ss_dssp CCEEEEEEEEEEEEECCS--CHHHHHHHHHHHHHHTTCCTTTEEEEEEE
T ss_pred ChheEEEEEEEEEEecCC--CHHHHHHHHHHHHHHhcCCCcceEEEEEE
Confidence 688899999999999865 556554444333433 477655544444
No 8
>2dfa_A Hypothetical UPF0271 protein TTHB195; lactam utilization protein, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} SCOP: c.6.2.5
Probab=10.81 E-value=1.4e+02 Score=25.53 Aligned_cols=21 Identities=33% Similarity=0.509 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHH-HhcCCCCce
Q psy17659 163 HDKALSDAIMEA-TAMNPDLKV 183 (195)
Q Consensus 163 hd~ala~ai~ea-~~~~Pd~~v 183 (195)
+|++||+||.+| +..+|++.+
T Consensus 120 ~d~~~A~av~~av~~~d~~L~l 141 (250)
T 2dfa_A 120 RDRETARAIALAVKAFDPGLPL 141 (250)
T ss_dssp HCHHHHHHHHHHHHHHCTTCCE
T ss_pred hCHHHHHHHHHHHHHhCCCcEE
Confidence 689999999999 456788765
No 9
>3ktm_A Amyloid beta A4 protein; protein structure, alzheimer disease, amyloidosis, apoptosis, cell adhesion, copper, disease mutation, disulfi endocytosis; 2.70A {Homo sapiens} PDB: 1owt_A 2fkl_A
Probab=10.68 E-value=1.7e+02 Score=24.48 Aligned_cols=21 Identities=10% Similarity=0.278 Sum_probs=18.0
Q ss_pred HHHHHHHHhcCCCCceEEEEE
Q psy17659 168 SDAIMEATAMNPDLKVEKIEI 188 (195)
Q Consensus 168 a~ai~ea~~~~Pd~~v~ki~v 188 (195)
-+.++-+++|+|++.|+.|+=
T Consensus 51 ~eIL~YCrkvYPel~ItNVVE 71 (191)
T 3ktm_A 51 EGILQYCQEVYPELQITNVVE 71 (191)
T ss_dssp HHHHHHHHHHCTTSCEEEEEE
T ss_pred HHHHHHHHHHCCCccccCccc
Confidence 467788999999999999863
No 10
>1v6t_A Hypothetical UPF0271 protein PH0986; TIM-barrel, lactam utilization protein, structural genomics; 1.70A {Pyrococcus horikoshii} SCOP: c.6.2.5
Probab=10.45 E-value=1.5e+02 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.428 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHH-HhcCCCCce
Q psy17659 162 DHDKALSDAIMEA-TAMNPDLKV 183 (195)
Q Consensus 162 Dhd~ala~ai~ea-~~~~Pd~~v 183 (195)
-+|++||+||.+| +..+|++.+
T Consensus 119 ~~d~~~A~av~~av~~~d~~L~l 141 (255)
T 1v6t_A 119 VKEEDLARAVIEGILDFDKDLIL 141 (255)
T ss_dssp HHCHHHHHHHHHHHHHHCTTCEE
T ss_pred hhCHHHHHHHHHHHHHhCCCcEE
Confidence 3689999999999 456788765
Done!