RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17659
(195 letters)
>gnl|CDD|147837 pfam05902, 4_1_CTD, 4.1 protein C-terminal domain (CTD). At the
C-terminus of all known 4.1 proteins is a sequence
domain unique to these proteins, known as the C-terminal
domain (CTD). Mammalian CTDs are associated with a
growing number of protein-protein interactions, although
such activities have yet to be associated with
invertebrate CTDs. Mammalian CTDs are generally defined
by sequence alignment as encoded by exons 18-21.
Comparison of known vertebrate 4.1 proteins with
invertebrate 4.1 proteins indicates that mammalian 4.1
exon 19 represents a vertebrate adaptation that extends
the sequence of the CTD with a Ser/Thr-rich sequence.
The CTD was first described as a 22/24-kDa domain by
chymotryptic digestion of erythrocyte 4.1 (4.1R). CTD is
thought to represent an independent folding structure
which has gained function since the divergence of
vertebrates from invertebrates.
Length = 114
Score = 42.6 bits (100), Expect = 9e-06
Identities = 29/68 (42%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 119 EQKITIQSDSDSVDHDKYKTEKDGVVETRVEQKITIQSDSDSVDHDKALSDAIMEATAMN 178
Q IT ++ S + KT K G+ ETR+E++I I D+D +DHD+AL+ AI EA +
Sbjct: 40 AQTITSETVSTTTTTHITKTVKGGISETRIEKRIVITGDAD-IDHDQALAQAIKEAKEQH 98
Query: 179 PDLKVEKI 186
PD+ V K+
Sbjct: 99 PDMSVTKV 106
>gnl|CDD|162204 TIGR01107, Na_K_ATPase_bet, Sodium Potassium ATPase beta subunit.
This model describes the Na+/K+ ATPase beta subunit in
eukaryotes. Na+/K+ ATPase(also called Sodium-Potassium
pump) is intimately associated with the plasma membrane.
It couples the energy released by the hydrolysis of ATP
to extrude 3 Na+ ions, with the concomitant uptake of
2K+ ions, against their ionic gradients [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 289
Score = 30.4 bits (69), Expect = 0.51
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 8/43 (18%)
Query: 114 VETRVEQKITIQSDSDSVDHDKYKTEKDGVVETRVEQKITIQS 156
E R+E KI ++ + S + D++ RV+ KITI+
Sbjct: 255 TEVRIECKIYGENIAYSNEKDRF--------LGRVDFKITIKK 289
>gnl|CDD|236304 PRK08581, PRK08581, N-acetylmuramoyl-L-alanine amidase; Validated.
Length = 619
Score = 28.2 bits (63), Expect = 2.7
Identities = 21/182 (11%), Positives = 64/182 (35%), Gaps = 11/182 (6%)
Query: 25 TVSTQVNKVEEKTVAHTTTTSGLRQEQRTVTQEVRATSTIL-------ADNNIEGSTEPG 77
T+++ ++ T T+ ++ + + TS+ +N + + +
Sbjct: 19 TLTSPTAYADDPQKDSTAKTTSHDSKKSNDDETSKDTSSKDTDKADNNNTSNQDNNDKKF 78
Query: 78 VEGTEETNVTTTVGEFISSQTISSKTRTYKT--EKDGVVETRVEQKITIQSDSDSVDHDK 135
T+ + + +FI + T + D + +SD D+++
Sbjct: 79 STIDSSTSDSNNIIDFIYKNLPQTNINQLLTKNKYDDNYSLTTLIQNLFNLNSDISDYEQ 138
Query: 136 YKTEKDGVVETRVEQKITIQSDSDSVDHDKALSDAIMEATAMN--PDLKVEKIEIQQQNQ 193
+ + ++ +I++D+D+ + +D ++ N P ++ + Q
Sbjct: 139 PRNSEKSTNDSNKNSDSSIKNDTDTQSSKQDKADNQKAPSSNNTKPSTSNKQPNSPKPTQ 198
Query: 194 QS 195
+
Sbjct: 199 PN 200
>gnl|CDD|185612 PTZ00430, PTZ00430, glucose-6-phosphate isomerase; Provisional.
Length = 552
Score = 28.4 bits (64), Expect = 2.8
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 10 RNIEEKVEDMRSGEVTVSTQVNKVEEKTVAHT 41
++EK++DM +GE +N E + V HT
Sbjct: 68 AKLKEKIKDMFNGEK-----INTTENRAVLHT 94
>gnl|CDD|212099 cd10787, LamB_YcsF_like, LamB/YcsF family of lactam utilization
protein. The LamB/YbgL family includes the Aspergillus
nidulans protein LamB, and its homologs from all three
kingdoms of life. The lamb gene locates at the lam locus
of Aspergillus nidulans, consisting of two divergently
transcribed genes, lamA and lamB, needed for the
utilization of lactams such as 2-pyrrolidinone. Both
genes are under the control of the positive regulatory
gene amdR and are subject to carbon and nitrogen
metabolite repression. Although the exact molecular
function of LamB is unknown, it might be required for
conversion of exogenous 2-pyrrolidinone to endogenous
GABA.
Length = 238
Score = 27.0 bits (61), Expect = 5.6
Identities = 8/22 (36%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 163 HDKALSDAIMEA-TAMNPDLKV 183
D+ L+ A+ A A++PDL +
Sbjct: 118 KDEELARAVARAVAAVDPDLIL 139
>gnl|CDD|221303 pfam11902, DUF3422, Protein of unknown function (DUF3422). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria, archaea and
eukaryotes. Proteins in this family are typically
between 426 to 444 amino acids in length.
Length = 419
Score = 26.7 bits (60), Expect = 7.9
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 6/31 (19%)
Query: 166 ALSDAIMEATAMNPDL--KVEKIEIQQQNQQ 194
LS + A+ + L +V+ +E++ QNQ
Sbjct: 315 DLSRRVARASDL---LRTRVD-VELEAQNQD 341
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.301 0.118 0.296
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,720,959
Number of extensions: 750233
Number of successful extensions: 417
Number of sequences better than 10.0: 1
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 28
Length of query: 195
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 103
Effective length of database: 6,857,034
Effective search space: 706274502
Effective search space used: 706274502
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 56 (25.4 bits)