RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17659
         (195 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
           synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 34.3 bits (78), Expect = 0.023
 Identities = 19/117 (16%), Positives = 37/117 (31%), Gaps = 39/117 (33%)

Query: 8   LTRNIEEKVEDMRSGEVTVSTQVNKVEEKTVAHTTTTSGLRQEQRTVTQEV--------- 58
           L    +   +D+    V+ + +  ++    V  T   S LR    ++++ +         
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQI---PVYDTFDGSDLRVLSGSISERIVDCIIRLPV 488

Query: 59  --------RATSTI------------LADNNIEGSTEPGVE----GTEETNVTTTVG 91
                   +AT  +            L   N +G+   GV     GT + N     G
Sbjct: 489 KWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT---GVRVIVAGTLDINPDDDYG 542


>1gyt_A Cytosol aminopeptidase; hydrolase, DNA recombination; 2.5A
           {Escherichia coli} SCOP: c.56.5.3 c.50.1.1
          Length = 503

 Score = 27.3 bits (61), Expect = 3.6
 Identities = 6/49 (12%), Positives = 16/49 (32%)

Query: 130 SVDHDKYKTEKDGVVETRVEQKITIQSDSDSVDHDKALSDAIMEATAMN 178
               D+ KT K        +    + +  +    ++A+   +  A  + 
Sbjct: 137 LYSFDQLKTNKSEPRRPLRKMVFNVPTRRELTSGERAIQHGLAIAAGIK 185


>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding
           protein, transport protein; 1.04A {Streptococcus
           pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A
          Length = 401

 Score = 27.4 bits (61), Expect = 3.7
 Identities = 8/44 (18%), Positives = 19/44 (43%)

Query: 151 KITIQSDSDSVDHDKALSDAIMEATAMNPDLKVEKIEIQQQNQQ 194
            +TI+  +   +  K L +   +    NP +KV+ + +    + 
Sbjct: 18  TVTIEYFNQKKEMTKTLEEITRDFEKENPKIKVKVVNVPNAGEV 61


>1t10_A GPI, glucose-6-phosphate isomerase, PGI, phosphohexose;
           phosphoglucose isomerase, substrate,
           D-fructose-6-phosphate; HET: F6P; 2.35A {Leishmania
           mexicana mexicana} SCOP: c.80.1.2
          Length = 605

 Score = 26.9 bits (60), Expect = 4.8
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 9/56 (16%)

Query: 10  RNIEEKVEDMRSGEVTVSTQVNKVEEKTVAHT----TTTSGLRQEQRTVTQEVRAT 61
           R +    + M  G+     +VN  E + V H      +   +  + + V  +V   
Sbjct: 122 RGVRAFAKAMFDGQ-----RVNSTENRAVLHVALRNRSNRPIIVDGKDVMSDVNNV 172


>2cxn_A Glucose-6-phosphate isomerase; 1.40A {Mus musculus} PDB: 2cvp_A
           2cxo_A* 2cxp_A* 2cxq_A* 2cxr_A* 2cxs_A* 2cxt_A* 2cxu_A
           1u0e_A 1u0f_A* 1u0g_A* 1jiq_A 1iri_A 1nuh_A* 1jlh_A
           1iat_A 1hm5_A 1g98_A 1hox_A* 1xtb_A* ...
          Length = 557

 Score = 26.4 bits (59), Expect = 6.2
 Identities = 12/56 (21%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 10  RNIEEKVEDMRSGEVTVSTQVNKVEEKTVAHT----TTTSGLRQEQRTVTQEVRAT 61
           R +E   ++M SG      ++N  E++ V H      + + ++ + + V  EV   
Sbjct: 75  RGVEAARDNMFSGS-----KINYTEDRAVLHVALRNRSNTPIKVDGKDVMPEVNRV 125


>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1,
           PIL1, BAR domain, plasma membrane, SELF-ASS
           phosphoprotein; 2.90A {Saccharomyces cerevisiae}
          Length = 234

 Score = 26.1 bits (57), Expect = 7.1
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 10  RNIEEKVEDMRSGEVTVSTQVNKVEEKTVAHTTTTSGLRQEQRTVTQEVRATSTILAD 67
           RNIE  V+  R  +  ++ ++  ++ K    +T    L QE      E       L++
Sbjct: 100 RNIEASVQPSRDRKEKITDEIAHLKYKD-PQSTKIPVLEQELVRAEAESLVAEAQLSN 156


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.301    0.118    0.296 

Gapped
Lambda     K      H
   0.267   0.0703    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,481,957
Number of extensions: 132300
Number of successful extensions: 161
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 16
Length of query: 195
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 106
Effective length of database: 4,216,824
Effective search space: 446983344
Effective search space used: 446983344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 17 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.8 bits)
S2: 55 (25.0 bits)